Multiple sequence alignment - TraesCS2D01G116100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G116100 chr2D 100.000 6644 0 0 1 6644 64602888 64596245 0.000000e+00 12270.0
1 TraesCS2D01G116100 chr2D 95.489 2217 81 10 1982 4185 555391569 555389359 0.000000e+00 3522.0
2 TraesCS2D01G116100 chr2D 95.432 2211 84 8 1984 4183 532150411 532152615 0.000000e+00 3507.0
3 TraesCS2D01G116100 chr2D 94.502 2237 87 18 1980 4183 538954843 538957076 0.000000e+00 3417.0
4 TraesCS2D01G116100 chr2D 84.098 937 95 33 916 1841 68858767 68857874 0.000000e+00 856.0
5 TraesCS2D01G116100 chr2D 91.829 257 18 3 4332 4587 580967968 580967714 8.190000e-94 355.0
6 TraesCS2D01G116100 chr2D 92.537 201 12 2 718 918 68858994 68858797 1.090000e-72 285.0
7 TraesCS2D01G116100 chr2D 90.052 191 15 3 5289 5477 68857329 68857141 1.850000e-60 244.0
8 TraesCS2D01G116100 chr2D 82.239 259 19 7 5696 5928 471067309 471067566 1.460000e-46 198.0
9 TraesCS2D01G116100 chr2D 88.732 142 16 0 4960 5101 68857671 68857530 2.460000e-39 174.0
10 TraesCS2D01G116100 chr2D 80.169 237 20 9 5694 5903 119823761 119823997 1.150000e-32 152.0
11 TraesCS2D01G116100 chr2D 80.676 207 24 8 5945 6151 68856730 68856540 5.370000e-31 147.0
12 TraesCS2D01G116100 chr2D 85.870 92 13 0 6314 6405 87407434 87407525 1.520000e-16 99.0
13 TraesCS2D01G116100 chr2D 85.333 75 11 0 6210 6284 63691662 63691736 1.990000e-10 78.7
14 TraesCS2D01G116100 chr2D 83.784 74 10 2 6213 6284 392104494 392104567 1.200000e-07 69.4
15 TraesCS2D01G116100 chr1D 95.547 2201 87 6 1985 4183 352191129 352188938 0.000000e+00 3511.0
16 TraesCS2D01G116100 chr1D 89.604 404 16 4 4575 4953 254468565 254468967 2.150000e-134 490.0
17 TraesCS2D01G116100 chr1D 89.848 394 13 4 4587 4953 180377086 180376693 1.300000e-131 481.0
18 TraesCS2D01G116100 chr1D 83.077 260 18 11 5695 5928 351265308 351265567 5.220000e-51 213.0
19 TraesCS2D01G116100 chr1D 82.510 263 20 11 5695 5931 217261911 217261649 2.430000e-49 207.0
20 TraesCS2D01G116100 chr1D 81.784 269 21 10 5696 5937 473119043 473119310 4.060000e-47 200.0
21 TraesCS2D01G116100 chr1D 81.154 260 22 13 5696 5928 244246753 244247012 4.090000e-42 183.0
22 TraesCS2D01G116100 chr1D 90.977 133 8 2 5797 5928 475200005 475199876 6.850000e-40 176.0
23 TraesCS2D01G116100 chr1D 79.323 266 23 18 5695 5931 26449452 26449190 2.480000e-34 158.0
24 TraesCS2D01G116100 chr1D 83.871 93 11 3 6316 6405 474360663 474360572 1.190000e-12 86.1
25 TraesCS2D01G116100 chr1D 82.178 101 14 3 6314 6411 130133636 130133735 4.270000e-12 84.2
26 TraesCS2D01G116100 chr1D 87.500 72 7 1 476 547 138347291 138347222 1.540000e-11 82.4
27 TraesCS2D01G116100 chr1D 85.135 74 9 2 6213 6284 365537300 365537227 2.570000e-09 75.0
28 TraesCS2D01G116100 chr1D 80.851 94 16 2 6314 6405 409539836 409539929 9.240000e-09 73.1
29 TraesCS2D01G116100 chr1A 95.389 2212 90 7 1982 4185 265642140 265644347 0.000000e+00 3509.0
30 TraesCS2D01G116100 chr1A 83.333 270 17 13 5692 5933 448115742 448115473 2.410000e-54 224.0
31 TraesCS2D01G116100 chr1A 82.239 259 20 12 5696 5928 316213277 316213019 4.060000e-47 200.0
32 TraesCS2D01G116100 chr1A 82.239 259 20 12 5696 5928 501614305 501614563 4.060000e-47 200.0
33 TraesCS2D01G116100 chr1A 81.923 260 20 2 5696 5928 31856680 31856421 1.890000e-45 195.0
34 TraesCS2D01G116100 chr1A 87.500 72 7 1 476 547 154576865 154576796 1.540000e-11 82.4
35 TraesCS2D01G116100 chr1A 83.333 72 12 0 6213 6284 489243926 489243997 4.300000e-07 67.6
36 TraesCS2D01G116100 chr1A 84.507 71 7 3 6216 6284 494894222 494894154 4.300000e-07 67.6
37 TraesCS2D01G116100 chr1B 94.853 2215 96 11 1984 4183 218418227 218420438 0.000000e+00 3443.0
38 TraesCS2D01G116100 chr1B 93.729 303 16 3 4587 4888 217977539 217977839 1.020000e-122 451.0
39 TraesCS2D01G116100 chr1B 96.970 66 2 0 4888 4953 440827320 440827385 1.960000e-20 111.0
40 TraesCS2D01G116100 chr1B 85.714 77 9 1 476 552 212748889 212748963 5.520000e-11 80.5
41 TraesCS2D01G116100 chr7D 94.789 2226 82 12 1980 4181 136692668 136690453 0.000000e+00 3437.0
42 TraesCS2D01G116100 chr7D 93.953 2216 106 16 1985 4183 159665657 159663453 0.000000e+00 3325.0
43 TraesCS2D01G116100 chr7D 82.500 280 18 17 5681 5931 326788291 326788568 4.030000e-52 217.0
44 TraesCS2D01G116100 chr7D 83.404 235 30 6 5695 5928 157101049 157101275 6.750000e-50 209.0
45 TraesCS2D01G116100 chr7D 85.106 94 14 0 6315 6408 252055391 252055484 5.480000e-16 97.1
46 TraesCS2D01G116100 chr7D 86.047 86 12 0 6320 6405 588838608 588838523 7.090000e-15 93.5
47 TraesCS2D01G116100 chr2B 94.259 2212 108 10 1984 4183 457675079 457677283 0.000000e+00 3363.0
48 TraesCS2D01G116100 chr2B 91.152 972 64 12 5687 6644 100848036 100847073 0.000000e+00 1299.0
49 TraesCS2D01G116100 chr2B 86.975 714 41 23 4957 5657 100913497 100912823 0.000000e+00 756.0
50 TraesCS2D01G116100 chr2B 82.825 885 110 27 972 1846 100849722 100848870 0.000000e+00 754.0
51 TraesCS2D01G116100 chr2B 84.783 736 76 24 4968 5688 100848802 100848088 0.000000e+00 706.0
52 TraesCS2D01G116100 chr2B 92.208 462 26 6 848 1309 100914357 100913906 0.000000e+00 645.0
53 TraesCS2D01G116100 chr2B 88.912 478 44 7 1 471 100917066 100916591 1.240000e-161 580.0
54 TraesCS2D01G116100 chr2B 88.378 413 32 6 1575 1977 100913907 100913501 3.600000e-132 483.0
55 TraesCS2D01G116100 chr2B 94.352 301 17 0 171 471 101436793 101436493 4.690000e-126 462.0
56 TraesCS2D01G116100 chr2B 94.020 301 18 0 171 471 101426072 101425772 2.180000e-124 457.0
57 TraesCS2D01G116100 chr2B 95.050 202 9 1 468 668 100915676 100915475 3.870000e-82 316.0
58 TraesCS2D01G116100 chr2B 93.506 154 6 2 467 616 101434501 101434348 6.700000e-55 226.0
59 TraesCS2D01G116100 chr2B 92.025 163 7 2 467 623 101424070 101423908 2.410000e-54 224.0
60 TraesCS2D01G116100 chr2B 92.000 125 6 2 722 846 100915010 100914890 8.860000e-39 172.0
61 TraesCS2D01G116100 chr2B 85.484 124 17 1 1984 2106 619938600 619938723 1.940000e-25 128.0
62 TraesCS2D01G116100 chr2B 88.298 94 10 1 6313 6405 652415560 652415467 1.960000e-20 111.0
63 TraesCS2D01G116100 chr2B 84.615 104 16 0 4971 5074 100919156 100919053 3.280000e-18 104.0
64 TraesCS2D01G116100 chr2B 100.000 30 0 0 668 697 180567581 180567552 1.000000e-03 56.5
65 TraesCS2D01G116100 chr4A 94.057 2221 106 12 1987 4191 610759007 610761217 0.000000e+00 3347.0
66 TraesCS2D01G116100 chr4A 88.500 400 23 3 4575 4953 205020240 205019843 4.690000e-126 462.0
67 TraesCS2D01G116100 chr4A 83.824 136 10 10 1983 2106 82840868 82841003 1.170000e-22 119.0
68 TraesCS2D01G116100 chr4A 81.818 110 20 0 4971 5080 162129499 162129390 7.090000e-15 93.5
69 TraesCS2D01G116100 chr4A 100.000 31 0 0 161 191 563047117 563047147 2.590000e-04 58.4
70 TraesCS2D01G116100 chr4A 100.000 30 0 0 668 697 3868228 3868257 1.000000e-03 56.5
71 TraesCS2D01G116100 chr6D 93.057 2247 86 25 1983 4183 107938743 107936521 0.000000e+00 3221.0
72 TraesCS2D01G116100 chr6D 92.218 257 17 3 4332 4587 431064312 431064566 1.760000e-95 361.0
73 TraesCS2D01G116100 chr6D 92.188 256 17 3 4332 4586 33250824 33250571 6.330000e-95 359.0
74 TraesCS2D01G116100 chr6D 91.473 258 18 4 4332 4588 53715620 53715366 1.060000e-92 351.0
75 TraesCS2D01G116100 chr6D 89.051 274 28 2 4323 4595 6322295 6322023 8.250000e-89 339.0
76 TraesCS2D01G116100 chr6D 83.456 272 18 13 5682 5928 160794041 160793772 1.860000e-55 228.0
77 TraesCS2D01G116100 chr6D 83.588 262 17 12 5693 5928 388990619 388990880 8.670000e-54 222.0
78 TraesCS2D01G116100 chr6D 82.692 260 19 12 5695 5928 26354240 26353981 2.430000e-49 207.0
79 TraesCS2D01G116100 chr6D 82.759 261 17 14 5696 5928 454127288 454127028 2.430000e-49 207.0
80 TraesCS2D01G116100 chr6D 78.927 261 28 10 5694 5928 219437377 219437636 1.150000e-32 152.0
81 TraesCS2D01G116100 chr6D 88.043 92 11 0 6314 6405 454993223 454993314 7.040000e-20 110.0
82 TraesCS2D01G116100 chr6D 87.654 81 10 0 6314 6394 20298230 20298310 1.970000e-15 95.3
83 TraesCS2D01G116100 chr6D 81.905 105 18 1 6312 6415 73815409 73815305 3.300000e-13 87.9
84 TraesCS2D01G116100 chr6D 86.667 75 7 3 590 662 390732737 390732664 5.520000e-11 80.5
85 TraesCS2D01G116100 chr6D 87.879 66 6 2 591 654 442160199 442160134 7.140000e-10 76.8
86 TraesCS2D01G116100 chr6D 85.135 74 9 2 6213 6284 341737762 341737689 2.570000e-09 75.0
87 TraesCS2D01G116100 chr6D 93.182 44 3 0 6209 6252 292306095 292306052 1.550000e-06 65.8
88 TraesCS2D01G116100 chr6D 95.000 40 2 0 6213 6252 118086293 118086254 5.560000e-06 63.9
89 TraesCS2D01G116100 chr6D 82.667 75 10 2 6213 6284 226780045 226779971 5.560000e-06 63.9
90 TraesCS2D01G116100 chr5D 94.995 1938 68 13 1978 3898 560286123 560288048 0.000000e+00 3014.0
91 TraesCS2D01G116100 chr5D 90.299 402 15 3 4575 4953 503322653 503323053 7.690000e-139 505.0
92 TraesCS2D01G116100 chr5D 90.025 401 17 8 4575 4953 6244131 6243732 1.290000e-136 497.0
93 TraesCS2D01G116100 chr5D 89.776 401 18 8 4575 4953 523036476 523036077 5.990000e-135 492.0
94 TraesCS2D01G116100 chr5D 89.552 402 17 4 4575 4953 432324905 432324506 2.790000e-133 486.0
95 TraesCS2D01G116100 chr5D 92.188 256 17 3 4332 4586 21677056 21676803 6.330000e-95 359.0
96 TraesCS2D01G116100 chr5D 95.862 145 4 2 4184 4327 6244256 6244113 4.010000e-57 233.0
97 TraesCS2D01G116100 chr5D 95.172 145 5 2 4184 4327 503322528 503322671 1.860000e-55 228.0
98 TraesCS2D01G116100 chr5D 82.692 260 19 10 5695 5928 39043517 39043258 2.430000e-49 207.0
99 TraesCS2D01G116100 chr5D 82.759 261 17 12 5695 5928 529825360 529825619 2.430000e-49 207.0
100 TraesCS2D01G116100 chr5D 81.609 261 21 8 5695 5928 51685039 51685299 2.450000e-44 191.0
101 TraesCS2D01G116100 chr5D 86.022 93 11 2 6314 6405 416069561 416069470 1.520000e-16 99.0
102 TraesCS2D01G116100 chr5D 83.696 92 15 0 6314 6405 483625052 483625143 3.300000e-13 87.9
103 TraesCS2D01G116100 chr5D 83.784 74 10 1 6213 6284 295188476 295188403 1.200000e-07 69.4
104 TraesCS2D01G116100 chr2A 95.535 1075 41 4 668 1741 65686108 65685040 0.000000e+00 1712.0
105 TraesCS2D01G116100 chr2A 90.250 1118 64 20 4573 5657 65683846 65682741 0.000000e+00 1419.0
106 TraesCS2D01G116100 chr2A 84.063 822 94 22 916 1733 65680662 65679874 0.000000e+00 758.0
107 TraesCS2D01G116100 chr2A 90.299 536 27 5 149 683 65686645 65686134 0.000000e+00 678.0
108 TraesCS2D01G116100 chr2A 80.220 728 82 40 4968 5658 65679776 65679074 2.150000e-134 490.0
109 TraesCS2D01G116100 chr2A 92.488 213 16 0 1775 1987 65684182 65683970 8.370000e-79 305.0
110 TraesCS2D01G116100 chr2A 95.270 148 6 1 4181 4327 65683972 65683825 4.010000e-57 233.0
111 TraesCS2D01G116100 chr2A 81.749 263 20 15 5693 5928 768271199 768271460 1.890000e-45 195.0
112 TraesCS2D01G116100 chr2A 85.870 92 13 0 6314 6405 465367841 465367750 1.520000e-16 99.0
113 TraesCS2D01G116100 chr2A 93.750 48 3 0 668 715 659185137 659185090 9.240000e-09 73.1
114 TraesCS2D01G116100 chrUn 90.769 390 13 2 4587 4953 359775774 359776163 3.580000e-137 499.0
115 TraesCS2D01G116100 chrUn 89.604 404 16 3 4575 4953 357609432 357609030 2.150000e-134 490.0
116 TraesCS2D01G116100 chrUn 95.172 145 5 2 4184 4327 357609557 357609414 1.860000e-55 228.0
117 TraesCS2D01G116100 chrUn 94.483 145 6 2 4184 4327 298934906 298934763 8.670000e-54 222.0
118 TraesCS2D01G116100 chrUn 81.579 266 21 8 5690 5928 68758073 68758337 1.890000e-45 195.0
119 TraesCS2D01G116100 chrUn 79.537 259 24 9 5696 5926 82167942 82167685 2.480000e-34 158.0
120 TraesCS2D01G116100 chrUn 92.593 108 8 0 5696 5803 336901334 336901227 8.920000e-34 156.0
121 TraesCS2D01G116100 chrUn 87.500 88 9 2 6314 6400 300167492 300167406 4.240000e-17 100.0
122 TraesCS2D01G116100 chrUn 87.879 66 5 3 6314 6377 317080573 317080637 2.570000e-09 75.0
123 TraesCS2D01G116100 chrUn 93.023 43 3 0 6210 6252 60492498 60492540 5.560000e-06 63.9
124 TraesCS2D01G116100 chrUn 95.000 40 2 0 6213 6252 318520650 318520611 5.560000e-06 63.9
125 TraesCS2D01G116100 chr7B 90.769 390 13 2 4587 4953 662745870 662745481 3.580000e-137 499.0
126 TraesCS2D01G116100 chr7B 93.985 133 7 1 5797 5928 615378072 615378204 4.060000e-47 200.0
127 TraesCS2D01G116100 chr7B 80.000 265 26 16 5691 5928 538205176 538204912 3.190000e-38 171.0
128 TraesCS2D01G116100 chr3D 90.074 403 15 3 4575 4953 24156278 24156679 3.580000e-137 499.0
129 TraesCS2D01G116100 chr3D 90.323 279 22 5 4309 4586 437673645 437673371 1.760000e-95 361.0
130 TraesCS2D01G116100 chr3D 91.571 261 19 3 4332 4591 17649655 17649913 2.280000e-94 357.0
131 TraesCS2D01G116100 chr3D 95.172 145 5 2 4184 4327 24156153 24156296 1.860000e-55 228.0
132 TraesCS2D01G116100 chr3D 95.172 145 5 2 4184 4327 83716895 83717038 1.860000e-55 228.0
133 TraesCS2D01G116100 chr3D 83.019 265 18 13 5695 5933 359861280 359861543 1.450000e-51 215.0
134 TraesCS2D01G116100 chr3D 85.870 92 13 0 6314 6405 459077360 459077269 1.520000e-16 99.0
135 TraesCS2D01G116100 chr3D 83.505 97 13 3 6313 6408 167775300 167775206 3.300000e-13 87.9
136 TraesCS2D01G116100 chr3D 85.135 74 9 2 6213 6284 310710293 310710366 2.570000e-09 75.0
137 TraesCS2D01G116100 chr4D 94.620 316 14 2 4575 4888 19909834 19910148 2.790000e-133 486.0
138 TraesCS2D01G116100 chr4D 95.172 145 5 2 4184 4327 19909709 19909852 1.860000e-55 228.0
139 TraesCS2D01G116100 chr4D 82.707 266 19 14 5689 5928 349816053 349816317 1.880000e-50 211.0
140 TraesCS2D01G116100 chr4D 82.759 261 18 13 5695 5928 6767917 6767657 2.430000e-49 207.0
141 TraesCS2D01G116100 chr4D 82.946 258 17 12 5695 5925 333774657 333774914 2.430000e-49 207.0
142 TraesCS2D01G116100 chr4D 82.375 261 18 11 5695 5928 339451485 339451226 1.130000e-47 202.0
143 TraesCS2D01G116100 chr4D 82.422 256 21 14 5696 5928 377831276 377831022 1.130000e-47 202.0
144 TraesCS2D01G116100 chr4D 82.239 259 20 11 5696 5928 495898762 495898504 4.060000e-47 200.0
145 TraesCS2D01G116100 chr4D 81.992 261 21 12 5694 5928 117210800 117211060 1.460000e-46 198.0
146 TraesCS2D01G116100 chr4D 81.923 260 20 9 5696 5928 37936758 37936499 1.890000e-45 195.0
147 TraesCS2D01G116100 chr4D 80.224 268 24 9 5693 5931 105123156 105122889 2.460000e-39 174.0
148 TraesCS2D01G116100 chr4D 91.743 109 9 0 5695 5803 128446499 128446391 1.150000e-32 152.0
149 TraesCS2D01G116100 chr4D 78.544 261 27 18 5695 5928 168061535 168061793 1.930000e-30 145.0
150 TraesCS2D01G116100 chr4D 76.952 269 34 15 5694 5934 3381089 3381357 1.940000e-25 128.0
151 TraesCS2D01G116100 chr4D 81.905 105 17 2 4971 5074 314396836 314396939 3.300000e-13 87.9
152 TraesCS2D01G116100 chr4D 87.143 70 8 1 6216 6284 50072501 50072570 1.990000e-10 78.7
153 TraesCS2D01G116100 chr4D 81.188 101 15 2 6314 6411 297589744 297589843 1.990000e-10 78.7
154 TraesCS2D01G116100 chr4D 92.453 53 3 1 6213 6265 281207180 281207129 2.570000e-09 75.0
155 TraesCS2D01G116100 chr4D 81.250 96 14 3 6313 6405 350508900 350508806 2.570000e-09 75.0
156 TraesCS2D01G116100 chr4D 88.333 60 7 0 6225 6284 413945630 413945571 9.240000e-09 73.1
157 TraesCS2D01G116100 chr4D 79.787 94 17 2 6314 6405 96984771 96984678 4.300000e-07 67.6
158 TraesCS2D01G116100 chr4D 80.000 95 15 4 6313 6405 314400371 314400463 4.300000e-07 67.6
159 TraesCS2D01G116100 chr4D 84.848 66 8 2 6314 6377 271321943 271321878 1.550000e-06 65.8
160 TraesCS2D01G116100 chr4D 85.294 68 5 3 6314 6377 292827447 292827513 1.550000e-06 65.8
161 TraesCS2D01G116100 chr4D 78.218 101 18 2 6314 6411 251402271 251402370 2.000000e-05 62.1
162 TraesCS2D01G116100 chr4D 78.723 94 18 2 6314 6405 407017522 407017615 2.000000e-05 62.1
163 TraesCS2D01G116100 chr4D 92.500 40 3 0 6213 6252 207966140 207966101 2.590000e-04 58.4
164 TraesCS2D01G116100 chr4D 92.683 41 1 2 6213 6252 243723583 243723622 2.590000e-04 58.4
165 TraesCS2D01G116100 chr4D 100.000 28 0 0 6225 6252 138222971 138222944 1.200000e-02 52.8
166 TraesCS2D01G116100 chr4D 90.244 41 2 2 6213 6252 202837144 202837183 1.200000e-02 52.8
167 TraesCS2D01G116100 chr5A 91.698 265 19 3 4324 4587 5293689 5293951 1.360000e-96 364.0
168 TraesCS2D01G116100 chr5A 81.618 272 21 13 5692 5934 581134185 581133914 1.460000e-46 198.0
169 TraesCS2D01G116100 chr5A 89.130 92 10 0 6314 6405 426896811 426896902 1.510000e-21 115.0
170 TraesCS2D01G116100 chr5A 91.935 62 3 1 491 552 156175122 156175181 1.190000e-12 86.1
171 TraesCS2D01G116100 chr5B 85.897 234 24 5 5695 5920 285605484 285605716 2.390000e-59 241.0
172 TraesCS2D01G116100 chr5B 84.109 258 16 8 5696 5928 606309092 606309349 6.700000e-55 226.0
173 TraesCS2D01G116100 chr5B 83.588 262 17 12 5696 5931 296438331 296438070 8.670000e-54 222.0
174 TraesCS2D01G116100 chr5B 81.609 261 21 12 5695 5928 317310306 317310046 2.450000e-44 191.0
175 TraesCS2D01G116100 chr5B 81.439 264 22 13 5695 5931 550391010 550390747 2.450000e-44 191.0
176 TraesCS2D01G116100 chr5B 80.534 262 23 10 5695 5928 659093899 659094160 6.850000e-40 176.0
177 TraesCS2D01G116100 chr5B 84.314 102 9 5 6314 6409 281236586 281236686 7.090000e-15 93.5
178 TraesCS2D01G116100 chr5B 97.143 35 1 0 668 702 446568219 446568253 7.200000e-05 60.2
179 TraesCS2D01G116100 chr5B 100.000 28 0 0 668 695 518998817 518998790 1.200000e-02 52.8
180 TraesCS2D01G116100 chr7A 95.862 145 4 2 4184 4327 537842386 537842529 4.010000e-57 233.0
181 TraesCS2D01G116100 chr7A 82.239 259 19 13 5696 5928 243208974 243209231 1.460000e-46 198.0
182 TraesCS2D01G116100 chr7A 81.679 262 21 14 5690 5924 63409487 63409748 6.800000e-45 193.0
183 TraesCS2D01G116100 chr7A 81.439 264 21 3 5692 5928 44885985 44885723 2.450000e-44 191.0
184 TraesCS2D01G116100 chr7A 79.167 264 28 14 5692 5928 45069045 45068782 2.480000e-34 158.0
185 TraesCS2D01G116100 chr7A 90.909 66 2 3 491 555 509222386 509222448 1.190000e-12 86.1
186 TraesCS2D01G116100 chr3A 84.170 259 15 13 5696 5928 36246294 36246036 1.860000e-55 228.0
187 TraesCS2D01G116100 chr3A 80.784 255 22 9 5692 5920 46584226 46584479 2.460000e-39 174.0
188 TraesCS2D01G116100 chr3A 79.468 263 24 17 5693 5928 644894994 644895253 6.900000e-35 159.0
189 TraesCS2D01G116100 chr3A 86.957 92 12 0 6314 6405 450010400 450010309 3.280000e-18 104.0
190 TraesCS2D01G116100 chr3A 84.722 72 9 2 6215 6284 672954412 672954483 3.320000e-08 71.3
191 TraesCS2D01G116100 chr3A 91.304 46 3 1 605 649 546412572 546412617 2.000000e-05 62.1
192 TraesCS2D01G116100 chr6A 81.985 272 22 14 5693 5937 28564109 28563838 8.730000e-49 206.0
193 TraesCS2D01G116100 chr6A 81.295 278 24 13 5696 5945 530814600 530814323 4.060000e-47 200.0
194 TraesCS2D01G116100 chr6A 81.111 270 24 11 5693 5935 452195561 452195830 2.450000e-44 191.0
195 TraesCS2D01G116100 chr6A 81.008 258 22 12 5696 5926 576392131 576392388 5.290000e-41 180.0
196 TraesCS2D01G116100 chr6A 80.534 262 24 8 5694 5928 290614253 290613992 6.850000e-40 176.0
197 TraesCS2D01G116100 chr6A 80.769 260 18 16 5696 5928 534749782 534749528 2.460000e-39 174.0
198 TraesCS2D01G116100 chr6A 85.870 92 13 0 6314 6405 578515838 578515929 1.520000e-16 99.0
199 TraesCS2D01G116100 chr6A 82.243 107 15 4 6313 6416 149922483 149922378 9.180000e-14 89.8
200 TraesCS2D01G116100 chr6A 97.826 46 1 0 670 715 503774216 503774171 5.520000e-11 80.5
201 TraesCS2D01G116100 chr6A 86.486 74 6 3 6213 6284 555975441 555975370 1.990000e-10 78.7
202 TraesCS2D01G116100 chr4B 91.241 137 10 2 5797 5931 634462144 634462280 1.140000e-42 185.0
203 TraesCS2D01G116100 chr4B 82.857 105 16 2 4971 5074 392047295 392047398 7.090000e-15 93.5
204 TraesCS2D01G116100 chr4B 82.653 98 14 3 6314 6408 663936060 663936157 4.270000e-12 84.2
205 TraesCS2D01G116100 chr4B 97.297 37 0 1 594 629 27246375 27246411 2.000000e-05 62.1
206 TraesCS2D01G116100 chr3B 82.424 165 28 1 25 188 543895331 543895167 6.950000e-30 143.0
207 TraesCS2D01G116100 chr3B 87.179 117 12 3 1992 2106 168121469 168121354 5.410000e-26 130.0
208 TraesCS2D01G116100 chr3B 84.000 100 15 1 6311 6409 713288930 713289029 1.970000e-15 95.3
209 TraesCS2D01G116100 chr3B 86.111 72 10 0 6213 6284 691659630 691659559 1.990000e-10 78.7
210 TraesCS2D01G116100 chr3B 85.135 74 9 2 6213 6284 64506365 64506438 2.570000e-09 75.0
211 TraesCS2D01G116100 chr6B 88.889 72 8 0 6213 6284 255276497 255276426 9.180000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G116100 chr2D 64596245 64602888 6643 True 12270.000000 12270 100.000000 1 6644 1 chr2D.!!$R1 6643
1 TraesCS2D01G116100 chr2D 555389359 555391569 2210 True 3522.000000 3522 95.489000 1982 4185 1 chr2D.!!$R2 2203
2 TraesCS2D01G116100 chr2D 532150411 532152615 2204 False 3507.000000 3507 95.432000 1984 4183 1 chr2D.!!$F6 2199
3 TraesCS2D01G116100 chr2D 538954843 538957076 2233 False 3417.000000 3417 94.502000 1980 4183 1 chr2D.!!$F7 2203
4 TraesCS2D01G116100 chr2D 68856540 68858994 2454 True 341.200000 856 87.219000 718 6151 5 chr2D.!!$R4 5433
5 TraesCS2D01G116100 chr1D 352188938 352191129 2191 True 3511.000000 3511 95.547000 1985 4183 1 chr1D.!!$R5 2198
6 TraesCS2D01G116100 chr1A 265642140 265644347 2207 False 3509.000000 3509 95.389000 1982 4185 1 chr1A.!!$F1 2203
7 TraesCS2D01G116100 chr1B 218418227 218420438 2211 False 3443.000000 3443 94.853000 1984 4183 1 chr1B.!!$F3 2199
8 TraesCS2D01G116100 chr7D 136690453 136692668 2215 True 3437.000000 3437 94.789000 1980 4181 1 chr7D.!!$R1 2201
9 TraesCS2D01G116100 chr7D 159663453 159665657 2204 True 3325.000000 3325 93.953000 1985 4183 1 chr7D.!!$R2 2198
10 TraesCS2D01G116100 chr2B 457675079 457677283 2204 False 3363.000000 3363 94.259000 1984 4183 1 chr2B.!!$F1 2199
11 TraesCS2D01G116100 chr2B 100847073 100849722 2649 True 919.666667 1299 86.253333 972 6644 3 chr2B.!!$R3 5672
12 TraesCS2D01G116100 chr2B 100912823 100919156 6333 True 436.571429 756 89.734000 1 5657 7 chr2B.!!$R4 5656
13 TraesCS2D01G116100 chr2B 101434348 101436793 2445 True 344.000000 462 93.929000 171 616 2 chr2B.!!$R6 445
14 TraesCS2D01G116100 chr2B 101423908 101426072 2164 True 340.500000 457 93.022500 171 623 2 chr2B.!!$R5 452
15 TraesCS2D01G116100 chr4A 610759007 610761217 2210 False 3347.000000 3347 94.057000 1987 4191 1 chr4A.!!$F4 2204
16 TraesCS2D01G116100 chr6D 107936521 107938743 2222 True 3221.000000 3221 93.057000 1983 4183 1 chr6D.!!$R6 2200
17 TraesCS2D01G116100 chr5D 560286123 560288048 1925 False 3014.000000 3014 94.995000 1978 3898 1 chr5D.!!$F4 1920
18 TraesCS2D01G116100 chr5D 503322528 503323053 525 False 366.500000 505 92.735500 4184 4953 2 chr5D.!!$F5 769
19 TraesCS2D01G116100 chr5D 6243732 6244256 524 True 365.000000 497 92.943500 4184 4953 2 chr5D.!!$R7 769
20 TraesCS2D01G116100 chr2A 65679074 65686645 7571 True 799.285714 1712 89.732143 149 5658 7 chr2A.!!$R3 5509
21 TraesCS2D01G116100 chrUn 357609030 357609557 527 True 359.000000 490 92.388000 4184 4953 2 chrUn.!!$R6 769
22 TraesCS2D01G116100 chr3D 24156153 24156679 526 False 363.500000 499 92.623000 4184 4953 2 chr3D.!!$F5 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 6289 0.452987 GCAGGGTACATACGTCGTCA 59.547 55.000 0.00 0.00 0.00 4.35 F
1010 6367 0.179111 TGATCGACCATGGCGTCTTC 60.179 55.000 22.22 18.02 0.00 2.87 F
1734 7097 0.539986 TCCAAGAGGTATCCAACGCC 59.460 55.000 0.00 0.00 35.89 5.68 F
2538 8837 1.194772 GTTTCTGCGTGCTCCAAGTAC 59.805 52.381 0.00 0.00 0.00 2.73 F
4361 10702 0.179200 CGGGAGAAACGATTTTGCGG 60.179 55.000 0.00 0.00 35.12 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 8208 1.143684 ACACCAAGATGGAAGCACACT 59.856 47.619 2.85 0.0 40.96 3.55 R
1990 8260 1.675219 GGTCAGCCCGTTGGAGTTA 59.325 57.895 0.00 0.0 0.00 2.24 R
3515 9815 0.731514 TCATTTGCGACTCCGACGAC 60.732 55.000 0.00 0.0 38.22 4.34 R
4507 10848 0.039437 CTCGCCGCTACGATATGGTT 60.039 55.000 0.00 0.0 42.02 3.67 R
6123 16430 0.618458 ACTTTTCCGCATGGGCTAGA 59.382 50.000 3.80 0.0 38.10 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 2134 7.352739 TCTACAGTTTCTTTTTCATTTCTCGC 58.647 34.615 0.00 0.00 0.00 5.03
52 2143 4.530094 TTTCATTTCTCGCGCGAAATAT 57.470 36.364 33.99 18.84 40.59 1.28
53 2144 4.530094 TTCATTTCTCGCGCGAAATATT 57.470 36.364 33.99 14.57 40.59 1.28
95 2186 3.950794 TAAGGTTGCAGCTCGGCCG 62.951 63.158 22.12 22.12 0.00 6.13
130 2221 2.792749 CCTTATAAAAGGCCAAACGCG 58.207 47.619 5.01 3.53 45.78 6.01
147 2238 1.078709 GCGAACCGTAAACCCCTTAC 58.921 55.000 0.00 0.00 37.18 2.34
286 2377 2.268076 CCAAGTTCCAGTTGGGGCG 61.268 63.158 2.76 0.00 43.38 6.13
352 2449 2.818130 TTATATGTCCGTTACCCCGC 57.182 50.000 0.00 0.00 0.00 6.13
353 2450 1.702182 TATATGTCCGTTACCCCGCA 58.298 50.000 0.00 0.00 0.00 5.69
361 2458 2.030958 GTTACCCCGCACAACCTCG 61.031 63.158 0.00 0.00 0.00 4.63
378 2475 1.509370 CGTCGAGTCGTCAACCTCG 60.509 63.158 13.12 2.83 40.25 4.63
399 2496 2.989840 GTCGTCCTCAACATTGTCAGAG 59.010 50.000 10.63 10.63 0.00 3.35
645 5020 2.673258 TGACCCAGTCACACTACAAGA 58.327 47.619 0.00 0.00 37.67 3.02
695 5110 8.613060 ATGTGCAATAATTAGGACACATCTAG 57.387 34.615 17.65 0.00 43.27 2.43
697 5112 7.710907 TGTGCAATAATTAGGACACATCTAGAC 59.289 37.037 11.22 0.00 33.41 2.59
706 5121 4.219944 AGGACACATCTAGACGTGCTTTAA 59.780 41.667 18.42 0.00 36.57 1.52
748 5537 0.991920 ACTGGGTGGATTTCGTGGAT 59.008 50.000 0.00 0.00 0.00 3.41
936 6289 0.452987 GCAGGGTACATACGTCGTCA 59.547 55.000 0.00 0.00 0.00 4.35
983 6340 2.425578 GCTAGCTAGCTAGGTTTCGG 57.574 55.000 39.60 22.25 45.62 4.30
1010 6367 0.179111 TGATCGACCATGGCGTCTTC 60.179 55.000 22.22 18.02 0.00 2.87
1011 6368 1.209275 GATCGACCATGGCGTCTTCG 61.209 60.000 22.22 18.39 40.37 3.79
1244 6601 4.920112 CGTGGCCGTTGTGACCCA 62.920 66.667 0.00 0.00 0.00 4.51
1247 6604 2.351276 GGCCGTTGTGACCCAGAT 59.649 61.111 0.00 0.00 0.00 2.90
1249 6606 2.040544 GCCGTTGTGACCCAGATGG 61.041 63.158 0.00 0.00 41.37 3.51
1734 7097 0.539986 TCCAAGAGGTATCCAACGCC 59.460 55.000 0.00 0.00 35.89 5.68
1762 7485 5.721232 ACCTCTCGTCAGTATTTTAGTTGG 58.279 41.667 0.00 0.00 0.00 3.77
1767 7490 8.080083 TCTCGTCAGTATTTTAGTTGGTTTTC 57.920 34.615 0.00 0.00 0.00 2.29
1772 7495 8.290325 GTCAGTATTTTAGTTGGTTTTCTCCTG 58.710 37.037 0.00 0.00 0.00 3.86
1793 7981 2.094182 GGAAAATCTTCCTTTTCGGGGC 60.094 50.000 0.00 0.00 46.80 5.80
1849 8037 2.241160 TGCCTCTTGTCACGGTAAGTA 58.759 47.619 0.00 0.00 0.00 2.24
1860 8048 5.477984 TGTCACGGTAAGTATTTACTGGACT 59.522 40.000 23.34 6.50 46.13 3.85
1885 8154 6.435164 AGCAAAACATATACTCCCTCCAATT 58.565 36.000 0.00 0.00 0.00 2.32
1938 8208 7.994911 TGACGGAGAAAGTATATACCTACTTCA 59.005 37.037 9.32 7.01 40.25 3.02
1990 8260 6.595716 GTGTTATTCACTGGAGCAATTAGAGT 59.404 38.462 0.00 0.00 43.13 3.24
2004 8274 2.226962 TAGAGTAACTCCAACGGGCT 57.773 50.000 0.00 0.00 0.00 5.19
2203 8500 8.245195 ACAAAATAGTCCGCCCAAATAAATAT 57.755 30.769 0.00 0.00 0.00 1.28
2408 8707 1.395045 CCGCTACTCCATGCTCAGGA 61.395 60.000 0.00 0.00 0.00 3.86
2538 8837 1.194772 GTTTCTGCGTGCTCCAAGTAC 59.805 52.381 0.00 0.00 0.00 2.73
2697 8996 9.693739 CAATAGTGGTCTACTGAGGATAGATAT 57.306 37.037 0.00 0.00 40.65 1.63
2844 9143 1.714541 TCCAGCCATGCCAAAGAAAA 58.285 45.000 0.00 0.00 0.00 2.29
3021 9321 3.673052 GCTAGCATTCATCGCCAACAAAA 60.673 43.478 10.63 0.00 0.00 2.44
3265 9565 4.072839 TCGAAGTAGTCATCATAGCCGAT 58.927 43.478 0.00 0.00 0.00 4.18
3368 9668 7.013942 GGGTTTGTTGTATCAAAGTAGTCCTTT 59.986 37.037 0.00 0.00 44.30 3.11
3446 9746 2.280592 GAGCCACGGAACAACGGT 60.281 61.111 0.00 0.00 38.39 4.83
3572 9872 1.296056 CGTCGGCGGAGTCCATTTTT 61.296 55.000 10.49 0.00 0.00 1.94
3619 9919 2.184579 GGGCGTCGAAGAAGGAGG 59.815 66.667 1.37 0.00 39.69 4.30
3882 10211 1.465856 GGAAGAGTCGCCGCAAAAATC 60.466 52.381 0.00 0.00 0.00 2.17
4060 10400 2.925684 TATGGGCCGGGAATGGGTCT 62.926 60.000 2.18 0.00 0.00 3.85
4128 10468 3.050275 GCCTTTTCTGTCCGCGCT 61.050 61.111 5.56 0.00 0.00 5.92
4137 10477 2.746277 GTCCGCGCTGACCCAAAT 60.746 61.111 19.96 0.00 0.00 2.32
4188 10528 7.177878 CCCCATTGGAGTTGCTCTTATATATT 58.822 38.462 3.62 0.00 35.39 1.28
4250 10590 7.195374 TGACATAAAGATTAGGTGCCTAACT 57.805 36.000 12.39 9.25 40.76 2.24
4342 10683 6.786207 AGAAACTAGCAAGGATTAAAATCGC 58.214 36.000 0.00 0.00 36.27 4.58
4343 10684 4.795970 ACTAGCAAGGATTAAAATCGCG 57.204 40.909 0.00 0.00 36.27 5.87
4344 10685 3.560068 ACTAGCAAGGATTAAAATCGCGG 59.440 43.478 6.13 0.00 36.27 6.46
4345 10686 1.676006 AGCAAGGATTAAAATCGCGGG 59.324 47.619 6.13 0.00 36.27 6.13
4346 10687 1.673920 GCAAGGATTAAAATCGCGGGA 59.326 47.619 6.13 4.03 36.27 5.14
4347 10688 2.287009 GCAAGGATTAAAATCGCGGGAG 60.287 50.000 6.13 0.00 36.27 4.30
4348 10689 3.202906 CAAGGATTAAAATCGCGGGAGA 58.797 45.455 6.13 0.00 36.27 3.71
4349 10690 3.553828 AGGATTAAAATCGCGGGAGAA 57.446 42.857 6.13 0.05 36.27 2.87
4350 10691 3.881220 AGGATTAAAATCGCGGGAGAAA 58.119 40.909 6.13 0.00 36.27 2.52
4351 10692 3.626217 AGGATTAAAATCGCGGGAGAAAC 59.374 43.478 6.13 0.00 36.27 2.78
4352 10693 3.545426 GGATTAAAATCGCGGGAGAAACG 60.545 47.826 6.13 0.00 36.27 3.60
4353 10694 2.367030 TAAAATCGCGGGAGAAACGA 57.633 45.000 6.13 0.00 40.53 3.85
4356 10697 3.453559 ATCGCGGGAGAAACGATTT 57.546 47.368 6.13 0.00 43.55 2.17
4357 10698 1.734163 ATCGCGGGAGAAACGATTTT 58.266 45.000 6.13 0.00 43.55 1.82
4358 10699 0.793861 TCGCGGGAGAAACGATTTTG 59.206 50.000 6.13 0.00 0.00 2.44
4359 10700 0.793104 CGCGGGAGAAACGATTTTGC 60.793 55.000 0.00 0.00 0.00 3.68
4360 10701 0.793104 GCGGGAGAAACGATTTTGCG 60.793 55.000 0.00 0.00 37.29 4.85
4361 10702 0.179200 CGGGAGAAACGATTTTGCGG 60.179 55.000 0.00 0.00 35.12 5.69
4362 10703 0.456142 GGGAGAAACGATTTTGCGGC 60.456 55.000 0.00 0.00 35.12 6.53
4363 10704 0.793104 GGAGAAACGATTTTGCGGCG 60.793 55.000 0.51 0.51 35.12 6.46
4364 10705 0.793104 GAGAAACGATTTTGCGGCGG 60.793 55.000 9.78 0.00 35.12 6.13
4365 10706 2.430075 AAACGATTTTGCGGCGGC 60.430 55.556 9.78 9.68 40.52 6.53
4366 10707 3.907481 AAACGATTTTGCGGCGGCC 62.907 57.895 14.25 9.54 38.85 6.13
4368 10709 4.536687 CGATTTTGCGGCGGCCTC 62.537 66.667 18.34 10.20 38.85 4.70
4369 10710 3.134127 GATTTTGCGGCGGCCTCT 61.134 61.111 18.34 0.00 38.85 3.69
4370 10711 3.113386 GATTTTGCGGCGGCCTCTC 62.113 63.158 18.34 6.65 38.85 3.20
4380 10721 2.765807 GGCCTCTCCCAGCAGCTA 60.766 66.667 0.00 0.00 0.00 3.32
4381 10722 2.146061 GGCCTCTCCCAGCAGCTAT 61.146 63.158 0.00 0.00 0.00 2.97
4382 10723 0.833834 GGCCTCTCCCAGCAGCTATA 60.834 60.000 0.00 0.00 0.00 1.31
4383 10724 0.607620 GCCTCTCCCAGCAGCTATAG 59.392 60.000 0.00 0.00 0.00 1.31
4384 10725 0.607620 CCTCTCCCAGCAGCTATAGC 59.392 60.000 17.33 17.33 42.49 2.97
4395 10736 3.056628 GCTATAGCGGCTGCCATAG 57.943 57.895 23.82 23.82 43.20 2.23
4407 10748 2.332514 CCATAGCGGGCAATTGCG 59.667 61.111 23.48 12.29 43.26 4.85
4408 10749 2.332514 CATAGCGGGCAATTGCGG 59.667 61.111 23.48 18.28 43.26 5.69
4409 10750 3.595758 ATAGCGGGCAATTGCGGC 61.596 61.111 27.85 27.85 43.26 6.53
4413 10754 2.125592 CGGGCAATTGCGGCAAAT 60.126 55.556 23.48 8.73 43.26 2.32
4414 10755 1.140589 CGGGCAATTGCGGCAAATA 59.859 52.632 23.48 0.00 43.26 1.40
4415 10756 0.871163 CGGGCAATTGCGGCAAATAG 60.871 55.000 23.48 13.00 43.26 1.73
4416 10757 1.153597 GGGCAATTGCGGCAAATAGC 61.154 55.000 23.48 21.08 43.26 2.97
4417 10758 1.481819 GGCAATTGCGGCAAATAGCG 61.482 55.000 23.48 7.56 43.26 4.26
4448 10789 5.324832 TTTTGGTGGGAGAGAAGATTTCT 57.675 39.130 0.00 0.00 44.21 2.52
4449 10790 3.988976 TGGTGGGAGAGAAGATTTCTG 57.011 47.619 0.00 0.00 40.87 3.02
4450 10791 2.573462 TGGTGGGAGAGAAGATTTCTGG 59.427 50.000 0.00 0.00 40.87 3.86
4451 10792 2.840651 GGTGGGAGAGAAGATTTCTGGA 59.159 50.000 0.00 0.00 40.87 3.86
4452 10793 3.118445 GGTGGGAGAGAAGATTTCTGGAG 60.118 52.174 0.00 0.00 40.87 3.86
4453 10794 3.110705 TGGGAGAGAAGATTTCTGGAGG 58.889 50.000 0.00 0.00 40.87 4.30
4454 10795 2.437651 GGGAGAGAAGATTTCTGGAGGG 59.562 54.545 0.00 0.00 40.87 4.30
4455 10796 3.111484 GGAGAGAAGATTTCTGGAGGGT 58.889 50.000 0.00 0.00 40.87 4.34
4456 10797 3.521531 GGAGAGAAGATTTCTGGAGGGTT 59.478 47.826 0.00 0.00 40.87 4.11
4457 10798 4.018870 GGAGAGAAGATTTCTGGAGGGTTT 60.019 45.833 0.00 0.00 40.87 3.27
4458 10799 5.515710 GGAGAGAAGATTTCTGGAGGGTTTT 60.516 44.000 0.00 0.00 40.87 2.43
4459 10800 5.320277 AGAGAAGATTTCTGGAGGGTTTTG 58.680 41.667 0.00 0.00 40.87 2.44
4460 10801 3.829026 AGAAGATTTCTGGAGGGTTTTGC 59.171 43.478 0.00 0.00 38.91 3.68
4461 10802 3.532641 AGATTTCTGGAGGGTTTTGCT 57.467 42.857 0.00 0.00 0.00 3.91
4462 10803 3.160269 AGATTTCTGGAGGGTTTTGCTG 58.840 45.455 0.00 0.00 0.00 4.41
4463 10804 2.452600 TTTCTGGAGGGTTTTGCTGT 57.547 45.000 0.00 0.00 0.00 4.40
4464 10805 2.452600 TTCTGGAGGGTTTTGCTGTT 57.547 45.000 0.00 0.00 0.00 3.16
4465 10806 2.452600 TCTGGAGGGTTTTGCTGTTT 57.547 45.000 0.00 0.00 0.00 2.83
4466 10807 2.745968 TCTGGAGGGTTTTGCTGTTTT 58.254 42.857 0.00 0.00 0.00 2.43
4467 10808 3.103742 TCTGGAGGGTTTTGCTGTTTTT 58.896 40.909 0.00 0.00 0.00 1.94
4468 10809 3.118811 TCTGGAGGGTTTTGCTGTTTTTG 60.119 43.478 0.00 0.00 0.00 2.44
4469 10810 2.834549 TGGAGGGTTTTGCTGTTTTTGA 59.165 40.909 0.00 0.00 0.00 2.69
4470 10811 3.118811 TGGAGGGTTTTGCTGTTTTTGAG 60.119 43.478 0.00 0.00 0.00 3.02
4471 10812 2.866156 GAGGGTTTTGCTGTTTTTGAGC 59.134 45.455 0.00 0.00 36.95 4.26
4472 10813 1.939934 GGGTTTTGCTGTTTTTGAGCC 59.060 47.619 0.00 0.00 35.43 4.70
4473 10814 2.626840 GGTTTTGCTGTTTTTGAGCCA 58.373 42.857 0.00 0.00 35.43 4.75
4474 10815 3.205338 GGTTTTGCTGTTTTTGAGCCAT 58.795 40.909 0.00 0.00 35.43 4.40
4475 10816 3.627123 GGTTTTGCTGTTTTTGAGCCATT 59.373 39.130 0.00 0.00 35.43 3.16
4476 10817 4.096231 GGTTTTGCTGTTTTTGAGCCATTT 59.904 37.500 0.00 0.00 35.43 2.32
4477 10818 5.295540 GGTTTTGCTGTTTTTGAGCCATTTA 59.704 36.000 0.00 0.00 35.43 1.40
4478 10819 6.421405 GTTTTGCTGTTTTTGAGCCATTTAG 58.579 36.000 0.00 0.00 35.43 1.85
4479 10820 5.528043 TTGCTGTTTTTGAGCCATTTAGA 57.472 34.783 0.00 0.00 35.43 2.10
4480 10821 5.125100 TGCTGTTTTTGAGCCATTTAGAG 57.875 39.130 0.00 0.00 35.43 2.43
4481 10822 4.022068 TGCTGTTTTTGAGCCATTTAGAGG 60.022 41.667 0.00 0.00 35.43 3.69
4482 10823 4.619160 GCTGTTTTTGAGCCATTTAGAGGG 60.619 45.833 0.00 0.00 0.00 4.30
4483 10824 4.735369 TGTTTTTGAGCCATTTAGAGGGA 58.265 39.130 0.00 0.00 0.00 4.20
4484 10825 5.332743 TGTTTTTGAGCCATTTAGAGGGAT 58.667 37.500 0.00 0.00 0.00 3.85
4485 10826 6.489603 TGTTTTTGAGCCATTTAGAGGGATA 58.510 36.000 0.00 0.00 0.00 2.59
4486 10827 7.125391 TGTTTTTGAGCCATTTAGAGGGATAT 58.875 34.615 0.00 0.00 0.00 1.63
4487 10828 7.068593 TGTTTTTGAGCCATTTAGAGGGATATG 59.931 37.037 0.00 0.00 0.00 1.78
4488 10829 5.912149 TTGAGCCATTTAGAGGGATATGT 57.088 39.130 0.00 0.00 0.00 2.29
4489 10830 5.233083 TGAGCCATTTAGAGGGATATGTG 57.767 43.478 0.00 0.00 0.00 3.21
4490 10831 4.042062 TGAGCCATTTAGAGGGATATGTGG 59.958 45.833 0.00 0.00 0.00 4.17
4491 10832 4.242811 AGCCATTTAGAGGGATATGTGGA 58.757 43.478 0.00 0.00 0.00 4.02
4492 10833 4.288105 AGCCATTTAGAGGGATATGTGGAG 59.712 45.833 0.00 0.00 0.00 3.86
4493 10834 4.566488 GCCATTTAGAGGGATATGTGGAGG 60.566 50.000 0.00 0.00 0.00 4.30
4494 10835 4.846367 CCATTTAGAGGGATATGTGGAGGA 59.154 45.833 0.00 0.00 0.00 3.71
4495 10836 5.490357 CCATTTAGAGGGATATGTGGAGGAT 59.510 44.000 0.00 0.00 0.00 3.24
4496 10837 6.012157 CCATTTAGAGGGATATGTGGAGGATT 60.012 42.308 0.00 0.00 0.00 3.01
4497 10838 7.465116 CATTTAGAGGGATATGTGGAGGATTT 58.535 38.462 0.00 0.00 0.00 2.17
4498 10839 6.688073 TTAGAGGGATATGTGGAGGATTTC 57.312 41.667 0.00 0.00 0.00 2.17
4499 10840 3.580458 AGAGGGATATGTGGAGGATTTCG 59.420 47.826 0.00 0.00 0.00 3.46
4500 10841 2.039084 AGGGATATGTGGAGGATTTCGC 59.961 50.000 0.00 0.00 0.00 4.70
4501 10842 2.069273 GGATATGTGGAGGATTTCGCG 58.931 52.381 0.00 0.00 0.00 5.87
4502 10843 2.069273 GATATGTGGAGGATTTCGCGG 58.931 52.381 6.13 0.00 0.00 6.46
4503 10844 0.531974 TATGTGGAGGATTTCGCGGC 60.532 55.000 6.13 0.00 0.00 6.53
4504 10845 2.435938 GTGGAGGATTTCGCGGCA 60.436 61.111 6.13 0.00 0.00 5.69
4505 10846 2.038269 GTGGAGGATTTCGCGGCAA 61.038 57.895 6.13 0.00 0.00 4.52
4506 10847 2.038269 TGGAGGATTTCGCGGCAAC 61.038 57.895 6.13 0.00 0.00 4.17
4507 10848 2.038269 GGAGGATTTCGCGGCAACA 61.038 57.895 6.13 0.00 0.00 3.33
4508 10849 1.582610 GGAGGATTTCGCGGCAACAA 61.583 55.000 6.13 0.00 0.00 2.83
4509 10850 0.454452 GAGGATTTCGCGGCAACAAC 60.454 55.000 6.13 0.00 0.00 3.32
4510 10851 1.443702 GGATTTCGCGGCAACAACC 60.444 57.895 6.13 1.55 0.00 3.77
4511 10852 1.284408 GATTTCGCGGCAACAACCA 59.716 52.632 6.13 0.00 0.00 3.67
4512 10853 0.109319 GATTTCGCGGCAACAACCAT 60.109 50.000 6.13 0.00 0.00 3.55
4513 10854 1.131504 GATTTCGCGGCAACAACCATA 59.868 47.619 6.13 0.00 0.00 2.74
4514 10855 1.169577 TTTCGCGGCAACAACCATAT 58.830 45.000 6.13 0.00 0.00 1.78
4515 10856 0.730265 TTCGCGGCAACAACCATATC 59.270 50.000 6.13 0.00 0.00 1.63
4516 10857 1.011242 CGCGGCAACAACCATATCG 60.011 57.895 0.00 0.00 0.00 2.92
4517 10858 1.701545 CGCGGCAACAACCATATCGT 61.702 55.000 0.00 0.00 0.00 3.73
4518 10859 1.292061 GCGGCAACAACCATATCGTA 58.708 50.000 0.00 0.00 0.00 3.43
4519 10860 1.260561 GCGGCAACAACCATATCGTAG 59.739 52.381 0.00 0.00 0.00 3.51
4520 10861 1.260561 CGGCAACAACCATATCGTAGC 59.739 52.381 0.00 0.00 0.00 3.58
4521 10862 1.260561 GGCAACAACCATATCGTAGCG 59.739 52.381 0.00 0.00 0.00 4.26
4522 10863 1.260561 GCAACAACCATATCGTAGCGG 59.739 52.381 0.00 0.00 0.00 5.52
4523 10864 1.260561 CAACAACCATATCGTAGCGGC 59.739 52.381 0.00 0.00 0.00 6.53
4524 10865 0.596600 ACAACCATATCGTAGCGGCG 60.597 55.000 0.51 0.51 0.00 6.46
4525 10866 0.318360 CAACCATATCGTAGCGGCGA 60.318 55.000 12.98 7.99 45.32 5.54
4526 10867 0.039437 AACCATATCGTAGCGGCGAG 60.039 55.000 12.98 0.00 44.43 5.03
4527 10868 1.154016 CCATATCGTAGCGGCGAGG 60.154 63.158 12.98 0.00 44.43 4.63
4528 10869 1.801913 CATATCGTAGCGGCGAGGC 60.802 63.158 12.98 0.00 44.43 4.70
4529 10870 1.972223 ATATCGTAGCGGCGAGGCT 60.972 57.895 12.98 0.00 44.43 4.58
4530 10871 1.924320 ATATCGTAGCGGCGAGGCTC 61.924 60.000 12.98 3.87 44.43 4.70
4542 10883 4.888325 AGGCTCCCGGGCAGCTAT 62.888 66.667 31.11 22.15 43.56 2.97
4543 10884 2.923035 GGCTCCCGGGCAGCTATA 60.923 66.667 31.11 9.77 40.53 1.31
4544 10885 2.659610 GCTCCCGGGCAGCTATAG 59.340 66.667 27.75 16.02 33.75 1.31
4545 10886 2.659610 CTCCCGGGCAGCTATAGC 59.340 66.667 18.49 17.33 42.49 2.97
4565 10906 4.110493 AGCTATCGCGGCTGTTTC 57.890 55.556 6.13 0.00 42.32 2.78
4566 10907 1.878522 AGCTATCGCGGCTGTTTCG 60.879 57.895 6.13 0.00 42.32 3.46
4574 10915 2.513897 GGCTGTTTCGCGGGCTAT 60.514 61.111 6.13 0.00 44.74 2.97
4575 10916 2.112815 GGCTGTTTCGCGGGCTATT 61.113 57.895 6.13 0.00 44.74 1.73
4576 10917 1.654023 GGCTGTTTCGCGGGCTATTT 61.654 55.000 6.13 0.00 44.74 1.40
4577 10918 0.170339 GCTGTTTCGCGGGCTATTTT 59.830 50.000 6.13 0.00 0.00 1.82
4578 10919 1.399089 GCTGTTTCGCGGGCTATTTTA 59.601 47.619 6.13 0.00 0.00 1.52
4579 10920 2.159490 GCTGTTTCGCGGGCTATTTTAA 60.159 45.455 6.13 0.00 0.00 1.52
4580 10921 3.488553 GCTGTTTCGCGGGCTATTTTAAT 60.489 43.478 6.13 0.00 0.00 1.40
4581 10922 4.279659 CTGTTTCGCGGGCTATTTTAATC 58.720 43.478 6.13 0.00 0.00 1.75
4582 10923 3.942748 TGTTTCGCGGGCTATTTTAATCT 59.057 39.130 6.13 0.00 0.00 2.40
4583 10924 5.117584 TGTTTCGCGGGCTATTTTAATCTA 58.882 37.500 6.13 0.00 0.00 1.98
4584 10925 5.761234 TGTTTCGCGGGCTATTTTAATCTAT 59.239 36.000 6.13 0.00 0.00 1.98
4585 10926 5.856126 TTCGCGGGCTATTTTAATCTATG 57.144 39.130 6.13 0.00 0.00 2.23
4586 10927 4.250464 TCGCGGGCTATTTTAATCTATGG 58.750 43.478 6.13 0.00 0.00 2.74
4587 10928 4.020928 TCGCGGGCTATTTTAATCTATGGA 60.021 41.667 6.13 0.00 0.00 3.41
4588 10929 4.693566 CGCGGGCTATTTTAATCTATGGAA 59.306 41.667 0.00 0.00 0.00 3.53
4589 10930 5.180492 CGCGGGCTATTTTAATCTATGGAAA 59.820 40.000 0.00 0.00 0.00 3.13
4590 10931 6.379386 GCGGGCTATTTTAATCTATGGAAAC 58.621 40.000 0.00 0.00 0.00 2.78
4591 10932 6.206829 GCGGGCTATTTTAATCTATGGAAACT 59.793 38.462 0.00 0.00 0.00 2.66
4592 10933 7.389607 GCGGGCTATTTTAATCTATGGAAACTA 59.610 37.037 0.00 0.00 0.00 2.24
4593 10934 8.936864 CGGGCTATTTTAATCTATGGAAACTAG 58.063 37.037 0.00 0.00 0.00 2.57
4653 10998 6.784031 ACTTTCCTTGAGCATAATATAGGGG 58.216 40.000 0.00 0.00 0.00 4.79
4658 11003 7.231467 TCCTTGAGCATAATATAGGGGTTTTC 58.769 38.462 0.00 0.00 0.00 2.29
4800 11145 8.275040 CCCTATCCCTATGGTTTATTCTTATGG 58.725 40.741 0.00 0.00 0.00 2.74
4927 11293 7.899973 AGCATGGTCTTATTCAAATTCAAAGT 58.100 30.769 0.00 0.00 0.00 2.66
5102 11468 0.814010 AGCGTCGACAAAGCAACCTT 60.814 50.000 17.16 0.00 34.45 3.50
5222 11591 1.880027 GCCATCGTTCTTGAAAGGTGT 59.120 47.619 8.30 0.00 0.00 4.16
5531 15780 6.470235 GTGAACAGTGAACTGATCTTTTTGTG 59.530 38.462 17.11 0.00 46.59 3.33
5679 15928 4.477536 AATATCTCAGCCCACTAGGAGA 57.522 45.455 0.00 0.00 40.37 3.71
5704 16006 1.903183 GCCATAGGATGTACTCCCTCC 59.097 57.143 9.41 3.69 46.27 4.30
5716 16018 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
5722 16024 3.120649 CCTCCGTTTCTTTTTAGTCTGCG 60.121 47.826 0.00 0.00 0.00 5.18
5729 16031 7.686938 CCGTTTCTTTTTAGTCTGCGTATAAAG 59.313 37.037 0.00 0.00 0.00 1.85
5734 16036 9.263538 TCTTTTTAGTCTGCGTATAAAGTTTGA 57.736 29.630 0.00 0.00 0.00 2.69
5737 16039 8.766000 TTTAGTCTGCGTATAAAGTTTGATCA 57.234 30.769 0.00 0.00 0.00 2.92
5889 16192 5.329035 ACTTTGTGCAGTTTGACTTTGAT 57.671 34.783 0.00 0.00 0.00 2.57
5975 16278 5.519722 AGAGGTGTTTGCAAAAGTAAATCG 58.480 37.500 14.67 0.00 0.00 3.34
6008 16311 6.543465 CCTAATCATCAGTGCTTGTTTCCATA 59.457 38.462 0.00 0.00 0.00 2.74
6010 16313 4.910195 TCATCAGTGCTTGTTTCCATAGT 58.090 39.130 0.00 0.00 0.00 2.12
6012 16315 6.108687 TCATCAGTGCTTGTTTCCATAGTAG 58.891 40.000 0.00 0.00 0.00 2.57
6043 16349 1.861982 TAAGGGAGTGGCTAGTGGTC 58.138 55.000 0.00 0.00 0.00 4.02
6148 16455 3.632145 AGCCCATGCGGAAAAGTTTATAG 59.368 43.478 4.56 0.00 44.33 1.31
6216 16524 2.102757 GGTAGGCTAAAGTACTGCTCCC 59.897 54.545 0.00 0.00 0.00 4.30
6218 16526 2.552367 AGGCTAAAGTACTGCTCCCTT 58.448 47.619 0.00 0.00 0.00 3.95
6231 16539 5.176592 ACTGCTCCCTTCGTTTCTAAATAC 58.823 41.667 0.00 0.00 0.00 1.89
6267 16575 8.768501 AGAGATTCCAATGCGGACTATATATA 57.231 34.615 0.00 0.00 46.36 0.86
6268 16576 8.855110 AGAGATTCCAATGCGGACTATATATAG 58.145 37.037 16.73 16.73 46.36 1.31
6295 16605 8.606830 AGTAAAATGAGTGAAGGTAAGAAGGAT 58.393 33.333 0.00 0.00 0.00 3.24
6314 16624 9.793252 AGAAGGATCATGTTAAAATTTTCGATG 57.207 29.630 6.72 8.26 0.00 3.84
6403 16714 9.628500 AAACTTGTATTTAGAAACAGAGGAAGT 57.372 29.630 0.00 0.00 0.00 3.01
6413 16724 7.881775 AGAAACAGAGGAAGTAAAATGTTGT 57.118 32.000 0.00 0.00 31.67 3.32
6431 16742 1.135915 TGTTGCAACATCAAAACCGCT 59.864 42.857 27.96 0.00 33.17 5.52
6448 16759 2.030363 CCGCTCCAGCACACAAAAATAA 60.030 45.455 0.00 0.00 42.21 1.40
6502 16814 6.339730 TGAGCATCAACAAACAAAGACAAAT 58.660 32.000 0.00 0.00 45.97 2.32
6553 16865 1.480137 CAACCACAAAACAGAAGCCCA 59.520 47.619 0.00 0.00 0.00 5.36
6601 16913 7.639113 AACATACAAAAAGTGACAAGGAAGA 57.361 32.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.979578 AGAAACTGTAGAGATGATCATTCATAC 57.020 33.333 10.14 12.57 42.73 2.39
23 2114 3.975035 GCGCGAGAAATGAAAAAGAAACT 59.025 39.130 12.10 0.00 0.00 2.66
75 2166 1.718757 GGCCGAGCTGCAACCTTATG 61.719 60.000 1.02 0.00 0.00 1.90
95 2186 2.047002 TAAGGGGCGAATTTGGCTAC 57.953 50.000 18.03 11.70 34.31 3.58
96 2187 4.440826 TTATAAGGGGCGAATTTGGCTA 57.559 40.909 18.03 4.41 34.31 3.93
122 2213 0.384601 GGTTTACGGTTCGCGTTTGG 60.385 55.000 5.77 0.00 0.00 3.28
123 2214 0.384601 GGGTTTACGGTTCGCGTTTG 60.385 55.000 5.77 0.00 0.00 2.93
130 2221 3.076621 CCTTGTAAGGGGTTTACGGTTC 58.923 50.000 2.63 0.00 43.78 3.62
282 2373 2.887568 CTGAGCATGTCGACGCCC 60.888 66.667 11.62 0.15 0.00 6.13
286 2377 1.325943 GCTTTAGCTGAGCATGTCGAC 59.674 52.381 9.11 9.11 39.89 4.20
352 2449 0.725118 GACGACTCGACGAGGTTGTG 60.725 60.000 27.39 14.36 33.35 3.33
353 2450 1.162181 TGACGACTCGACGAGGTTGT 61.162 55.000 27.39 21.04 33.35 3.32
378 2475 2.989840 CTCTGACAATGTTGAGGACGAC 59.010 50.000 8.70 0.00 0.00 4.34
399 2496 2.241722 CACGATCATCGGCAACAAAAC 58.758 47.619 12.67 0.00 45.59 2.43
695 5110 6.470877 TGAATTCAGTTTTGTTAAAGCACGTC 59.529 34.615 3.38 0.00 0.00 4.34
697 5112 6.804534 TGAATTCAGTTTTGTTAAAGCACG 57.195 33.333 3.38 0.00 0.00 5.34
721 5136 4.457949 ACGAAATCCACCCAGTATCAAAAC 59.542 41.667 0.00 0.00 0.00 2.43
731 5146 2.193127 ACTATCCACGAAATCCACCCA 58.807 47.619 0.00 0.00 0.00 4.51
748 5537 2.813754 ACACGTAAGCGGACTACAACTA 59.186 45.455 0.00 0.00 43.45 2.24
817 5606 1.872313 CATGTTTGGCCACGCAAAAAT 59.128 42.857 3.88 0.00 32.93 1.82
818 5607 1.293924 CATGTTTGGCCACGCAAAAA 58.706 45.000 3.88 0.00 32.93 1.94
819 5608 1.156645 GCATGTTTGGCCACGCAAAA 61.157 50.000 3.88 0.00 0.00 2.44
826 5616 0.469070 AAGCTTTGCATGTTTGGCCA 59.531 45.000 0.00 0.00 0.00 5.36
828 5618 1.528161 GACAAGCTTTGCATGTTTGGC 59.472 47.619 16.61 12.17 40.58 4.52
936 6289 3.371097 AATCGATCAGCACGGCGGT 62.371 57.895 13.24 0.00 0.00 5.68
965 6318 1.957877 AGCCGAAACCTAGCTAGCTAG 59.042 52.381 35.39 35.39 44.07 3.42
1284 6641 2.621055 CTCCTCGTCCCAGAAGTAGATG 59.379 54.545 0.00 0.00 0.00 2.90
1339 6699 2.606826 GAGGTCGGGGGTCTTGGT 60.607 66.667 0.00 0.00 0.00 3.67
1734 7097 8.436046 ACTAAAATACTGACGAGAGGTAGTAG 57.564 38.462 0.00 0.00 37.17 2.57
1781 7969 2.818751 ATATTGTGCCCCGAAAAGGA 57.181 45.000 0.00 0.00 45.00 3.36
1860 8048 6.569127 TTGGAGGGAGTATATGTTTTGCTA 57.431 37.500 0.00 0.00 0.00 3.49
1885 8154 5.463286 TCGTTTGAGCGACAAGTAATTCTA 58.537 37.500 0.00 0.00 39.77 2.10
1938 8208 1.143684 ACACCAAGATGGAAGCACACT 59.856 47.619 2.85 0.00 40.96 3.55
1990 8260 1.675219 GGTCAGCCCGTTGGAGTTA 59.325 57.895 0.00 0.00 0.00 2.24
2004 8274 4.973055 CGCCGTCCGTTTGGGTCA 62.973 66.667 0.00 0.00 37.00 4.02
2408 8707 4.339247 CAGTTTCAGGGTGAGAATGTTGTT 59.661 41.667 0.00 0.00 0.00 2.83
2538 8837 2.922758 GCATCGTTCGGTATCCTGCTAG 60.923 54.545 0.00 0.00 0.00 3.42
2682 8981 5.013808 TGGGTGACGATATCTATCCTCAGTA 59.986 44.000 0.34 0.00 31.54 2.74
2697 8996 2.823959 AGGGTACTATTTGGGTGACGA 58.176 47.619 0.00 0.00 0.00 4.20
2904 9203 2.057922 AGGGCAGTATAAGGGACATGG 58.942 52.381 0.00 0.00 0.00 3.66
3089 9389 6.022107 TGCCTAGAGTCCCTGTATAAGTTA 57.978 41.667 0.00 0.00 0.00 2.24
3265 9565 3.947612 ACCGTATTAGAGAGGGAGTGA 57.052 47.619 0.00 0.00 0.00 3.41
3301 9601 2.897972 GTCGCCGGTTCCCTATGT 59.102 61.111 1.90 0.00 0.00 2.29
3325 9625 1.679153 ACCCGTTGTTCAAACATCACC 59.321 47.619 0.00 0.00 38.95 4.02
3368 9668 1.902508 AGCGGACATTTCCTTCTCTGA 59.097 47.619 0.00 0.00 40.23 3.27
3446 9746 1.227823 CCACCTCAACAACCAGCGA 60.228 57.895 0.00 0.00 0.00 4.93
3515 9815 0.731514 TCATTTGCGACTCCGACGAC 60.732 55.000 0.00 0.00 38.22 4.34
3572 9872 1.139256 TCGACAGTTTGCCAAGGTACA 59.861 47.619 0.00 0.00 0.00 2.90
3643 9943 1.229336 AGCTAGCTGGTCTGTGGGT 60.229 57.895 18.57 0.00 0.00 4.51
3675 9975 4.379143 CGCCGTCACACTCGTCGA 62.379 66.667 0.00 0.00 31.56 4.20
3735 10038 2.815647 GCCCGCGACCAAGAAGAG 60.816 66.667 8.23 0.00 0.00 2.85
4033 10372 1.152777 CCCGGCCCATATTTGAGCA 60.153 57.895 0.00 0.00 0.00 4.26
4041 10381 2.369015 ACCCATTCCCGGCCCATA 60.369 61.111 0.00 0.00 0.00 2.74
4060 10400 3.037249 CGTTTTTCGTCCGCGGGA 61.037 61.111 27.83 13.34 38.89 5.14
4128 10468 2.034999 GGCCGTCCATTTGGGTCA 59.965 61.111 0.00 0.00 38.11 4.02
4188 10528 7.168219 ACACTTGCCTCAGATTGACTTAAATA 58.832 34.615 0.00 0.00 0.00 1.40
4192 10532 4.623932 ACACTTGCCTCAGATTGACTTA 57.376 40.909 0.00 0.00 0.00 2.24
4202 10542 1.070786 GACCCGAACACTTGCCTCA 59.929 57.895 0.00 0.00 0.00 3.86
4327 10668 3.202906 TCTCCCGCGATTTTAATCCTTG 58.797 45.455 8.23 0.00 31.68 3.61
4328 10669 3.553828 TCTCCCGCGATTTTAATCCTT 57.446 42.857 8.23 0.00 31.68 3.36
4329 10670 3.553828 TTCTCCCGCGATTTTAATCCT 57.446 42.857 8.23 0.00 31.68 3.24
4330 10671 3.545426 CGTTTCTCCCGCGATTTTAATCC 60.545 47.826 8.23 0.00 31.68 3.01
4331 10672 3.307782 TCGTTTCTCCCGCGATTTTAATC 59.692 43.478 8.23 0.00 0.00 1.75
4332 10673 3.264104 TCGTTTCTCCCGCGATTTTAAT 58.736 40.909 8.23 0.00 0.00 1.40
4333 10674 2.686235 TCGTTTCTCCCGCGATTTTAA 58.314 42.857 8.23 0.00 0.00 1.52
4334 10675 2.367030 TCGTTTCTCCCGCGATTTTA 57.633 45.000 8.23 0.00 0.00 1.52
4335 10676 1.734163 ATCGTTTCTCCCGCGATTTT 58.266 45.000 8.23 0.00 41.78 1.82
4336 10677 3.453559 ATCGTTTCTCCCGCGATTT 57.546 47.368 8.23 0.00 41.78 2.17
4337 10678 3.453559 AATCGTTTCTCCCGCGATT 57.546 47.368 8.23 5.71 46.31 3.34
4338 10679 1.396996 CAAAATCGTTTCTCCCGCGAT 59.603 47.619 8.23 0.00 45.66 4.58
4339 10680 0.793861 CAAAATCGTTTCTCCCGCGA 59.206 50.000 8.23 0.00 39.02 5.87
4340 10681 0.793104 GCAAAATCGTTTCTCCCGCG 60.793 55.000 0.00 0.00 0.00 6.46
4341 10682 0.793104 CGCAAAATCGTTTCTCCCGC 60.793 55.000 0.00 0.00 0.00 6.13
4342 10683 0.179200 CCGCAAAATCGTTTCTCCCG 60.179 55.000 0.00 0.00 0.00 5.14
4343 10684 0.456142 GCCGCAAAATCGTTTCTCCC 60.456 55.000 0.00 0.00 0.00 4.30
4344 10685 0.793104 CGCCGCAAAATCGTTTCTCC 60.793 55.000 0.00 0.00 0.00 3.71
4345 10686 0.793104 CCGCCGCAAAATCGTTTCTC 60.793 55.000 0.00 0.00 0.00 2.87
4346 10687 1.209127 CCGCCGCAAAATCGTTTCT 59.791 52.632 0.00 0.00 0.00 2.52
4347 10688 2.433334 GCCGCCGCAAAATCGTTTC 61.433 57.895 0.00 0.00 34.03 2.78
4348 10689 2.430075 GCCGCCGCAAAATCGTTT 60.430 55.556 0.00 0.00 34.03 3.60
4349 10690 4.413800 GGCCGCCGCAAAATCGTT 62.414 61.111 0.00 0.00 36.38 3.85
4351 10692 4.536687 GAGGCCGCCGCAAAATCG 62.537 66.667 8.47 0.00 36.38 3.34
4352 10693 3.113386 GAGAGGCCGCCGCAAAATC 62.113 63.158 16.13 0.74 36.38 2.17
4353 10694 3.134127 GAGAGGCCGCCGCAAAAT 61.134 61.111 16.13 0.00 36.38 1.82
4363 10704 0.833834 TATAGCTGCTGGGAGAGGCC 60.834 60.000 13.43 0.00 0.00 5.19
4364 10705 0.607620 CTATAGCTGCTGGGAGAGGC 59.392 60.000 13.43 0.00 0.00 4.70
4365 10706 0.607620 GCTATAGCTGCTGGGAGAGG 59.392 60.000 17.75 0.00 38.21 3.69
4366 10707 0.243365 CGCTATAGCTGCTGGGAGAG 59.757 60.000 21.98 4.64 39.32 3.20
4367 10708 1.181741 CCGCTATAGCTGCTGGGAGA 61.182 60.000 21.98 0.00 39.32 3.71
4368 10709 1.291588 CCGCTATAGCTGCTGGGAG 59.708 63.158 21.98 7.61 39.32 4.30
4369 10710 2.872388 GCCGCTATAGCTGCTGGGA 61.872 63.158 27.86 0.00 45.80 4.37
4370 10711 2.358003 GCCGCTATAGCTGCTGGG 60.358 66.667 27.86 19.26 45.80 4.45
4376 10717 2.671145 TATGGCAGCCGCTATAGCT 58.329 52.632 21.98 0.86 40.30 3.32
4390 10731 2.332514 CGCAATTGCCCGCTATGG 59.667 61.111 24.24 4.09 37.91 2.74
4391 10732 2.332514 CCGCAATTGCCCGCTATG 59.667 61.111 24.24 8.44 37.91 2.23
4392 10733 3.595758 GCCGCAATTGCCCGCTAT 61.596 61.111 24.24 0.00 37.91 2.97
4395 10736 2.897641 TATTTGCCGCAATTGCCCGC 62.898 55.000 24.24 23.88 37.91 6.13
4396 10737 0.871163 CTATTTGCCGCAATTGCCCG 60.871 55.000 24.24 15.39 37.91 6.13
4397 10738 1.153597 GCTATTTGCCGCAATTGCCC 61.154 55.000 24.24 15.66 37.91 5.36
4398 10739 1.481819 CGCTATTTGCCGCAATTGCC 61.482 55.000 24.24 12.00 38.78 4.52
4399 10740 1.481819 CCGCTATTTGCCGCAATTGC 61.482 55.000 20.76 20.76 38.78 3.56
4400 10741 0.871163 CCCGCTATTTGCCGCAATTG 60.871 55.000 6.64 0.00 38.78 2.32
4401 10742 1.034838 TCCCGCTATTTGCCGCAATT 61.035 50.000 6.64 6.18 38.78 2.32
4402 10743 0.823356 ATCCCGCTATTTGCCGCAAT 60.823 50.000 6.64 0.23 38.78 3.56
4403 10744 1.034838 AATCCCGCTATTTGCCGCAA 61.035 50.000 0.38 0.38 38.78 4.85
4404 10745 1.034838 AAATCCCGCTATTTGCCGCA 61.035 50.000 0.00 0.00 38.78 5.69
4405 10746 0.102300 AAAATCCCGCTATTTGCCGC 59.898 50.000 0.00 0.00 38.78 6.53
4406 10747 2.577449 AAAAATCCCGCTATTTGCCG 57.423 45.000 0.00 0.00 38.78 5.69
4425 10766 5.536161 CAGAAATCTTCTCTCCCACCAAAAA 59.464 40.000 0.00 0.00 38.11 1.94
4426 10767 5.072741 CAGAAATCTTCTCTCCCACCAAAA 58.927 41.667 0.00 0.00 38.11 2.44
4427 10768 4.507335 CCAGAAATCTTCTCTCCCACCAAA 60.507 45.833 0.00 0.00 38.11 3.28
4428 10769 3.009473 CCAGAAATCTTCTCTCCCACCAA 59.991 47.826 0.00 0.00 38.11 3.67
4429 10770 2.573462 CCAGAAATCTTCTCTCCCACCA 59.427 50.000 0.00 0.00 38.11 4.17
4430 10771 2.840651 TCCAGAAATCTTCTCTCCCACC 59.159 50.000 0.00 0.00 38.11 4.61
4431 10772 3.118445 CCTCCAGAAATCTTCTCTCCCAC 60.118 52.174 0.00 0.00 38.11 4.61
4432 10773 3.110705 CCTCCAGAAATCTTCTCTCCCA 58.889 50.000 0.00 0.00 38.11 4.37
4433 10774 2.437651 CCCTCCAGAAATCTTCTCTCCC 59.562 54.545 0.00 0.00 38.11 4.30
4434 10775 3.111484 ACCCTCCAGAAATCTTCTCTCC 58.889 50.000 0.00 0.00 38.11 3.71
4435 10776 4.835284 AACCCTCCAGAAATCTTCTCTC 57.165 45.455 0.00 0.00 38.11 3.20
4436 10777 5.320277 CAAAACCCTCCAGAAATCTTCTCT 58.680 41.667 0.00 0.00 38.11 3.10
4437 10778 4.082517 GCAAAACCCTCCAGAAATCTTCTC 60.083 45.833 0.00 0.00 38.11 2.87
4438 10779 3.829026 GCAAAACCCTCCAGAAATCTTCT 59.171 43.478 0.00 0.00 41.70 2.85
4439 10780 3.829026 AGCAAAACCCTCCAGAAATCTTC 59.171 43.478 0.00 0.00 0.00 2.87
4440 10781 3.575687 CAGCAAAACCCTCCAGAAATCTT 59.424 43.478 0.00 0.00 0.00 2.40
4441 10782 3.160269 CAGCAAAACCCTCCAGAAATCT 58.840 45.455 0.00 0.00 0.00 2.40
4442 10783 2.893489 ACAGCAAAACCCTCCAGAAATC 59.107 45.455 0.00 0.00 0.00 2.17
4443 10784 2.962859 ACAGCAAAACCCTCCAGAAAT 58.037 42.857 0.00 0.00 0.00 2.17
4444 10785 2.452600 ACAGCAAAACCCTCCAGAAA 57.547 45.000 0.00 0.00 0.00 2.52
4445 10786 2.452600 AACAGCAAAACCCTCCAGAA 57.547 45.000 0.00 0.00 0.00 3.02
4446 10787 2.452600 AAACAGCAAAACCCTCCAGA 57.547 45.000 0.00 0.00 0.00 3.86
4447 10788 3.118811 TCAAAAACAGCAAAACCCTCCAG 60.119 43.478 0.00 0.00 0.00 3.86
4448 10789 2.834549 TCAAAAACAGCAAAACCCTCCA 59.165 40.909 0.00 0.00 0.00 3.86
4449 10790 3.457234 CTCAAAAACAGCAAAACCCTCC 58.543 45.455 0.00 0.00 0.00 4.30
4450 10791 2.866156 GCTCAAAAACAGCAAAACCCTC 59.134 45.455 0.00 0.00 36.82 4.30
4451 10792 2.419990 GGCTCAAAAACAGCAAAACCCT 60.420 45.455 0.00 0.00 38.77 4.34
4452 10793 1.939934 GGCTCAAAAACAGCAAAACCC 59.060 47.619 0.00 0.00 38.77 4.11
4453 10794 2.626840 TGGCTCAAAAACAGCAAAACC 58.373 42.857 0.00 0.00 38.77 3.27
4454 10795 4.880886 AATGGCTCAAAAACAGCAAAAC 57.119 36.364 0.00 0.00 38.77 2.43
4455 10796 6.344500 TCTAAATGGCTCAAAAACAGCAAAA 58.656 32.000 0.00 0.00 38.77 2.44
4456 10797 5.911752 TCTAAATGGCTCAAAAACAGCAAA 58.088 33.333 0.00 0.00 38.77 3.68
4457 10798 5.509501 CCTCTAAATGGCTCAAAAACAGCAA 60.510 40.000 0.00 0.00 38.77 3.91
4458 10799 4.022068 CCTCTAAATGGCTCAAAAACAGCA 60.022 41.667 0.00 0.00 38.77 4.41
4459 10800 4.488879 CCTCTAAATGGCTCAAAAACAGC 58.511 43.478 0.00 0.00 36.02 4.40
4460 10801 4.766891 TCCCTCTAAATGGCTCAAAAACAG 59.233 41.667 0.00 0.00 0.00 3.16
4461 10802 4.735369 TCCCTCTAAATGGCTCAAAAACA 58.265 39.130 0.00 0.00 0.00 2.83
4462 10803 5.921962 ATCCCTCTAAATGGCTCAAAAAC 57.078 39.130 0.00 0.00 0.00 2.43
4463 10804 7.068593 CACATATCCCTCTAAATGGCTCAAAAA 59.931 37.037 0.00 0.00 0.00 1.94
4464 10805 6.547141 CACATATCCCTCTAAATGGCTCAAAA 59.453 38.462 0.00 0.00 0.00 2.44
4465 10806 6.064060 CACATATCCCTCTAAATGGCTCAAA 58.936 40.000 0.00 0.00 0.00 2.69
4466 10807 5.456619 CCACATATCCCTCTAAATGGCTCAA 60.457 44.000 0.00 0.00 0.00 3.02
4467 10808 4.042062 CCACATATCCCTCTAAATGGCTCA 59.958 45.833 0.00 0.00 0.00 4.26
4468 10809 4.287067 TCCACATATCCCTCTAAATGGCTC 59.713 45.833 0.00 0.00 0.00 4.70
4469 10810 4.242811 TCCACATATCCCTCTAAATGGCT 58.757 43.478 0.00 0.00 0.00 4.75
4470 10811 4.566488 CCTCCACATATCCCTCTAAATGGC 60.566 50.000 0.00 0.00 0.00 4.40
4471 10812 4.846367 TCCTCCACATATCCCTCTAAATGG 59.154 45.833 0.00 0.00 0.00 3.16
4472 10813 6.633325 ATCCTCCACATATCCCTCTAAATG 57.367 41.667 0.00 0.00 0.00 2.32
4473 10814 7.527868 CGAAATCCTCCACATATCCCTCTAAAT 60.528 40.741 0.00 0.00 0.00 1.40
4474 10815 6.239600 CGAAATCCTCCACATATCCCTCTAAA 60.240 42.308 0.00 0.00 0.00 1.85
4475 10816 5.246203 CGAAATCCTCCACATATCCCTCTAA 59.754 44.000 0.00 0.00 0.00 2.10
4476 10817 4.772624 CGAAATCCTCCACATATCCCTCTA 59.227 45.833 0.00 0.00 0.00 2.43
4477 10818 3.580458 CGAAATCCTCCACATATCCCTCT 59.420 47.826 0.00 0.00 0.00 3.69
4478 10819 3.866449 GCGAAATCCTCCACATATCCCTC 60.866 52.174 0.00 0.00 0.00 4.30
4479 10820 2.039084 GCGAAATCCTCCACATATCCCT 59.961 50.000 0.00 0.00 0.00 4.20
4480 10821 2.427506 GCGAAATCCTCCACATATCCC 58.572 52.381 0.00 0.00 0.00 3.85
4481 10822 2.069273 CGCGAAATCCTCCACATATCC 58.931 52.381 0.00 0.00 0.00 2.59
4482 10823 2.069273 CCGCGAAATCCTCCACATATC 58.931 52.381 8.23 0.00 0.00 1.63
4483 10824 1.878102 GCCGCGAAATCCTCCACATAT 60.878 52.381 8.23 0.00 0.00 1.78
4484 10825 0.531974 GCCGCGAAATCCTCCACATA 60.532 55.000 8.23 0.00 0.00 2.29
4485 10826 1.819632 GCCGCGAAATCCTCCACAT 60.820 57.895 8.23 0.00 0.00 3.21
4486 10827 2.435938 GCCGCGAAATCCTCCACA 60.436 61.111 8.23 0.00 0.00 4.17
4487 10828 2.038269 TTGCCGCGAAATCCTCCAC 61.038 57.895 8.23 0.00 0.00 4.02
4488 10829 2.038269 GTTGCCGCGAAATCCTCCA 61.038 57.895 8.23 0.00 0.00 3.86
4489 10830 1.582610 TTGTTGCCGCGAAATCCTCC 61.583 55.000 8.23 0.00 0.00 4.30
4490 10831 0.454452 GTTGTTGCCGCGAAATCCTC 60.454 55.000 8.23 0.00 0.00 3.71
4491 10832 1.579429 GTTGTTGCCGCGAAATCCT 59.421 52.632 8.23 0.00 0.00 3.24
4492 10833 1.443702 GGTTGTTGCCGCGAAATCC 60.444 57.895 8.23 2.98 0.00 3.01
4493 10834 0.109319 ATGGTTGTTGCCGCGAAATC 60.109 50.000 8.23 0.00 0.00 2.17
4494 10835 1.169577 TATGGTTGTTGCCGCGAAAT 58.830 45.000 8.23 0.00 0.00 2.17
4495 10836 1.131504 GATATGGTTGTTGCCGCGAAA 59.868 47.619 8.23 0.00 0.00 3.46
4496 10837 0.730265 GATATGGTTGTTGCCGCGAA 59.270 50.000 8.23 0.00 0.00 4.70
4497 10838 1.425267 CGATATGGTTGTTGCCGCGA 61.425 55.000 8.23 0.00 0.00 5.87
4498 10839 1.011242 CGATATGGTTGTTGCCGCG 60.011 57.895 0.00 0.00 0.00 6.46
4499 10840 1.260561 CTACGATATGGTTGTTGCCGC 59.739 52.381 0.00 0.00 0.00 6.53
4500 10841 1.260561 GCTACGATATGGTTGTTGCCG 59.739 52.381 0.00 0.00 37.09 5.69
4501 10842 1.260561 CGCTACGATATGGTTGTTGCC 59.739 52.381 0.00 0.00 39.06 4.52
4502 10843 1.260561 CCGCTACGATATGGTTGTTGC 59.739 52.381 0.00 0.00 38.92 4.17
4503 10844 1.260561 GCCGCTACGATATGGTTGTTG 59.739 52.381 0.00 0.00 0.00 3.33
4504 10845 1.578583 GCCGCTACGATATGGTTGTT 58.421 50.000 0.00 0.00 0.00 2.83
4505 10846 0.596600 CGCCGCTACGATATGGTTGT 60.597 55.000 0.00 0.00 34.06 3.32
4506 10847 0.318360 TCGCCGCTACGATATGGTTG 60.318 55.000 0.00 0.00 37.09 3.77
4507 10848 0.039437 CTCGCCGCTACGATATGGTT 60.039 55.000 0.00 0.00 42.02 3.67
4508 10849 1.579932 CTCGCCGCTACGATATGGT 59.420 57.895 0.00 0.00 42.02 3.55
4509 10850 1.154016 CCTCGCCGCTACGATATGG 60.154 63.158 0.00 0.00 42.02 2.74
4510 10851 1.801913 GCCTCGCCGCTACGATATG 60.802 63.158 0.00 0.00 42.02 1.78
4511 10852 1.924320 GAGCCTCGCCGCTACGATAT 61.924 60.000 0.00 0.00 42.02 1.63
4512 10853 2.593725 AGCCTCGCCGCTACGATA 60.594 61.111 0.00 0.00 42.02 2.92
4513 10854 3.967335 GAGCCTCGCCGCTACGAT 61.967 66.667 0.00 0.00 42.02 3.73
4525 10866 3.468390 TATAGCTGCCCGGGAGCCT 62.468 63.158 29.89 22.78 37.12 4.58
4526 10867 2.923035 TATAGCTGCCCGGGAGCC 60.923 66.667 29.89 16.37 37.12 4.70
4527 10868 2.659610 CTATAGCTGCCCGGGAGC 59.340 66.667 29.31 28.32 36.65 4.70
4528 10869 2.659610 GCTATAGCTGCCCGGGAG 59.340 66.667 29.31 19.83 38.21 4.30
4529 10870 3.303135 CGCTATAGCTGCCCGGGA 61.303 66.667 29.31 8.79 39.32 5.14
4531 10872 4.299547 TGCGCTATAGCTGCCCGG 62.300 66.667 27.09 12.85 38.89 5.73
4532 10873 2.736236 CTGCGCTATAGCTGCCCG 60.736 66.667 27.09 18.74 38.89 6.13
4550 10891 2.621000 GCGAAACAGCCGCGATAG 59.379 61.111 8.23 0.00 43.28 2.08
4557 10898 1.654023 AAATAGCCCGCGAAACAGCC 61.654 55.000 8.23 0.00 0.00 4.85
4558 10899 0.170339 AAAATAGCCCGCGAAACAGC 59.830 50.000 8.23 1.83 0.00 4.40
4559 10900 3.750639 TTAAAATAGCCCGCGAAACAG 57.249 42.857 8.23 0.00 0.00 3.16
4560 10901 3.942748 AGATTAAAATAGCCCGCGAAACA 59.057 39.130 8.23 0.00 0.00 2.83
4561 10902 4.547406 AGATTAAAATAGCCCGCGAAAC 57.453 40.909 8.23 0.00 0.00 2.78
4562 10903 5.180492 CCATAGATTAAAATAGCCCGCGAAA 59.820 40.000 8.23 0.00 0.00 3.46
4563 10904 4.693566 CCATAGATTAAAATAGCCCGCGAA 59.306 41.667 8.23 0.00 0.00 4.70
4564 10905 4.020928 TCCATAGATTAAAATAGCCCGCGA 60.021 41.667 8.23 0.00 0.00 5.87
4565 10906 4.250464 TCCATAGATTAAAATAGCCCGCG 58.750 43.478 0.00 0.00 0.00 6.46
4566 10907 6.206829 AGTTTCCATAGATTAAAATAGCCCGC 59.793 38.462 0.00 0.00 0.00 6.13
4567 10908 7.745620 AGTTTCCATAGATTAAAATAGCCCG 57.254 36.000 0.00 0.00 0.00 6.13
4568 10909 9.794719 ACTAGTTTCCATAGATTAAAATAGCCC 57.205 33.333 0.00 0.00 35.35 5.19
4772 11117 7.723109 AAGAATAAACCATAGGGATAGGGTT 57.277 36.000 0.00 0.00 44.87 4.11
4897 11263 8.587608 TGAATTTGAATAAGACCATGCTTCTTT 58.412 29.630 11.76 0.00 34.99 2.52
4901 11267 8.370182 ACTTTGAATTTGAATAAGACCATGCTT 58.630 29.630 0.00 0.00 0.00 3.91
4927 11293 4.002906 ACTGGTTGAAGATTACGAAGCA 57.997 40.909 0.00 0.00 0.00 3.91
5102 11468 4.776322 CGCCGCCCTCCATTGTCA 62.776 66.667 0.00 0.00 0.00 3.58
5222 11591 4.476297 TCTGTGTAGGAGAACAGGTGTTA 58.524 43.478 0.00 0.00 43.28 2.41
5494 15742 1.065199 ACTGTTCACGGATCATGCCAT 60.065 47.619 0.00 0.00 0.00 4.40
5531 15780 1.734117 GCACAAACCATTCGCAGCC 60.734 57.895 0.00 0.00 0.00 4.85
5704 16006 8.219105 ACTTTATACGCAGACTAAAAAGAAACG 58.781 33.333 0.00 0.00 0.00 3.60
5716 16018 6.531948 ACTCTGATCAAACTTTATACGCAGAC 59.468 38.462 0.00 0.00 0.00 3.51
5722 16024 8.485976 AGCTTGACTCTGATCAAACTTTATAC 57.514 34.615 0.00 0.00 38.12 1.47
5729 16031 5.429957 ACAAAGCTTGACTCTGATCAAAC 57.570 39.130 0.00 0.00 38.12 2.93
5734 16036 7.283127 TCAAACTTTACAAAGCTTGACTCTGAT 59.717 33.333 13.75 0.00 42.74 2.90
5889 16192 4.948608 TTGCTCCGCGTATAAAATTTGA 57.051 36.364 4.92 0.00 0.00 2.69
5902 16205 2.044135 CTTCGTTTCTTTTTGCTCCGC 58.956 47.619 0.00 0.00 0.00 5.54
5903 16206 2.604614 CCCTTCGTTTCTTTTTGCTCCG 60.605 50.000 0.00 0.00 0.00 4.63
5920 16223 4.019174 CCATTGCATTGTAAGACTCCCTT 58.981 43.478 7.75 0.00 38.87 3.95
5975 16278 3.429410 GCACTGATGATTAGGCCAAAACC 60.429 47.826 5.01 0.00 0.00 3.27
6043 16349 6.229733 TGCCTGACCCAAATTTTAAATTCAG 58.770 36.000 3.23 6.40 0.00 3.02
6092 16399 1.752694 GCATTTTGCCCTAGCCGGA 60.753 57.895 5.05 0.00 37.42 5.14
6123 16430 0.618458 ACTTTTCCGCATGGGCTAGA 59.382 50.000 3.80 0.00 38.10 2.43
6148 16455 8.428186 TCGGTGTTGAAATTATGAAGTATACC 57.572 34.615 0.00 0.00 0.00 2.73
6160 16467 5.448632 GCGAAGGATATTCGGTGTTGAAATT 60.449 40.000 11.48 0.00 41.76 1.82
6161 16468 4.035208 GCGAAGGATATTCGGTGTTGAAAT 59.965 41.667 11.48 0.00 41.76 2.17
6162 16469 3.372822 GCGAAGGATATTCGGTGTTGAAA 59.627 43.478 11.48 0.00 41.76 2.69
6218 16526 9.970395 TCTACAAAGACTTGTATTTAGAAACGA 57.030 29.630 0.00 0.00 44.95 3.85
6231 16539 6.549952 GCATTGGAATCTCTACAAAGACTTG 58.450 40.000 0.00 0.00 38.61 3.16
6267 16575 8.097662 CCTTCTTACCTTCACTCATTTTACTCT 58.902 37.037 0.00 0.00 0.00 3.24
6268 16576 8.095169 TCCTTCTTACCTTCACTCATTTTACTC 58.905 37.037 0.00 0.00 0.00 2.59
6347 16657 6.636666 AGATTTCAATAAAAACTGCATGCG 57.363 33.333 14.09 10.50 29.60 4.73
6399 16710 7.462109 TGATGTTGCAACAACATTTTACTTC 57.538 32.000 34.06 22.28 43.03 3.01
6400 16711 7.840342 TTGATGTTGCAACAACATTTTACTT 57.160 28.000 34.09 17.10 43.03 2.24
6403 16714 7.467623 GGTTTTGATGTTGCAACAACATTTTA 58.532 30.769 34.09 21.24 43.03 1.52
6413 16724 1.269517 GGAGCGGTTTTGATGTTGCAA 60.270 47.619 0.00 0.00 0.00 4.08
6431 16742 7.994425 TTCTCTATTATTTTTGTGTGCTGGA 57.006 32.000 0.00 0.00 0.00 3.86
6468 16779 7.487484 TGTTTGTTGATGCTCACTTGATTTTA 58.513 30.769 0.00 0.00 0.00 1.52
6517 16829 4.000325 GTGGTTGCAAAGGTTTGAGTTTT 59.000 39.130 0.00 0.00 40.55 2.43
6610 16926 9.103861 TGTGAAGAACCCAAATTTTAATTTCAC 57.896 29.630 15.81 15.81 36.52 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.