Multiple sequence alignment - TraesCS2D01G115500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G115500 chr2D 100.000 2519 0 0 582 3100 64062888 64065406 0.000000e+00 4652.0
1 TraesCS2D01G115500 chr2D 100.000 335 0 0 1 335 64062307 64062641 1.220000e-173 619.0
2 TraesCS2D01G115500 chr2D 97.706 218 5 0 1 218 159163343 159163126 2.920000e-100 375.0
3 TraesCS2D01G115500 chr2D 98.131 214 4 0 1 214 64052798 64053011 1.050000e-99 374.0
4 TraesCS2D01G115500 chr2B 92.275 2563 130 21 582 3100 100075571 100078109 0.000000e+00 3574.0
5 TraesCS2D01G115500 chr2A 91.777 2566 140 29 582 3100 65516770 65519311 0.000000e+00 3504.0
6 TraesCS2D01G115500 chr5D 98.131 214 4 0 1 214 181821276 181821489 1.050000e-99 374.0
7 TraesCS2D01G115500 chr4D 98.131 214 4 0 1 214 65360362 65360575 1.050000e-99 374.0
8 TraesCS2D01G115500 chr1D 98.131 214 4 0 1 214 69811414 69811201 1.050000e-99 374.0
9 TraesCS2D01G115500 chr1D 97.248 218 6 0 1 218 69802653 69802436 1.360000e-98 370.0
10 TraesCS2D01G115500 chr1D 96.833 221 6 1 1 220 64362316 64362096 4.880000e-98 368.0
11 TraesCS2D01G115500 chr1D 73.585 265 52 11 1493 1744 244826715 244826974 5.510000e-13 86.1
12 TraesCS2D01G115500 chr3D 97.248 218 6 0 1 218 88006820 88006603 1.360000e-98 370.0
13 TraesCS2D01G115500 chr3D 95.633 229 6 4 1 228 124085351 124085126 6.320000e-97 364.0
14 TraesCS2D01G115500 chr7D 75.610 410 60 20 1798 2196 601366075 601366455 1.910000e-37 167.0
15 TraesCS2D01G115500 chr7D 75.758 231 37 14 1526 1744 186403105 186402882 7.070000e-17 99.0
16 TraesCS2D01G115500 chr7A 74.878 410 63 20 1798 2196 693111128 693111508 1.930000e-32 150.0
17 TraesCS2D01G115500 chr7A 89.583 96 9 1 1798 1892 693015820 693015915 1.510000e-23 121.0
18 TraesCS2D01G115500 chr3A 75.225 222 38 13 1535 1744 730867549 730867333 4.260000e-14 89.8
19 TraesCS2D01G115500 chr1A 74.000 250 48 12 1506 1744 574932865 574932622 5.510000e-13 86.1
20 TraesCS2D01G115500 chr6D 81.132 106 16 4 1640 1744 86731666 86731564 7.130000e-12 82.4
21 TraesCS2D01G115500 chr6A 79.167 120 19 5 1639 1755 214671626 214671510 9.220000e-11 78.7
22 TraesCS2D01G115500 chr6A 73.228 254 45 17 1506 1744 125839353 125839598 1.540000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G115500 chr2D 64062307 64065406 3099 False 2635.5 4652 100.000 1 3100 2 chr2D.!!$F2 3099
1 TraesCS2D01G115500 chr2B 100075571 100078109 2538 False 3574.0 3574 92.275 582 3100 1 chr2B.!!$F1 2518
2 TraesCS2D01G115500 chr2A 65516770 65519311 2541 False 3504.0 3504 91.777 582 3100 1 chr2A.!!$F1 2518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.027324 GTTCGAGTCGCTAGGGTACG 59.973 60.0 7.92 10.72 0.00 3.67 F
761 788 0.034059 GGGAGCGGTGGATCACATAG 59.966 60.0 0.00 0.00 35.86 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 1412 0.746659 GCCCTTGGATGCATGTTACC 59.253 55.0 2.46 0.0 0.0 2.85 R
2746 2824 1.109323 GCTTGCAGGTCTGGTTTGGT 61.109 55.0 0.00 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.236558 AGACTTCTAGGGTTTAGCCATTAC 57.763 41.667 0.26 0.00 39.65 1.89
24 25 5.019785 ACTTCTAGGGTTTAGCCATTACG 57.980 43.478 0.26 0.00 39.65 3.18
25 26 4.713321 ACTTCTAGGGTTTAGCCATTACGA 59.287 41.667 0.26 0.00 39.65 3.43
26 27 5.365895 ACTTCTAGGGTTTAGCCATTACGAT 59.634 40.000 0.26 0.00 39.65 3.73
27 28 5.464030 TCTAGGGTTTAGCCATTACGATC 57.536 43.478 0.26 0.00 39.65 3.69
28 29 5.145564 TCTAGGGTTTAGCCATTACGATCT 58.854 41.667 0.26 0.00 39.65 2.75
29 30 4.338379 AGGGTTTAGCCATTACGATCTC 57.662 45.455 0.26 0.00 39.65 2.75
30 31 3.057734 GGGTTTAGCCATTACGATCTCG 58.942 50.000 0.00 0.00 41.74 4.04
31 32 3.714391 GGTTTAGCCATTACGATCTCGT 58.286 45.455 10.40 10.40 45.76 4.18
32 33 3.489785 GGTTTAGCCATTACGATCTCGTG 59.510 47.826 15.08 0.00 44.51 4.35
33 34 5.554477 GGTTTAGCCATTACGATCTCGTGG 61.554 50.000 15.08 9.07 44.51 4.94
34 35 7.908458 GGTTTAGCCATTACGATCTCGTGGT 62.908 48.000 15.08 6.61 44.51 4.16
35 36 8.608003 GGTTTAGCCATTACGATCTCGTGGTA 62.608 46.154 15.08 5.71 44.51 3.25
47 48 4.703645 TCTCGTGGTAGATCAACTCTTG 57.296 45.455 0.00 0.00 35.28 3.02
48 49 4.079970 TCTCGTGGTAGATCAACTCTTGT 58.920 43.478 0.00 0.00 35.28 3.16
49 50 5.250982 TCTCGTGGTAGATCAACTCTTGTA 58.749 41.667 0.00 0.00 35.28 2.41
50 51 5.708697 TCTCGTGGTAGATCAACTCTTGTAA 59.291 40.000 0.00 0.00 35.28 2.41
51 52 6.377429 TCTCGTGGTAGATCAACTCTTGTAAT 59.623 38.462 0.00 0.00 35.28 1.89
52 53 7.555195 TCTCGTGGTAGATCAACTCTTGTAATA 59.445 37.037 0.00 0.00 35.28 0.98
53 54 7.478322 TCGTGGTAGATCAACTCTTGTAATAC 58.522 38.462 0.00 0.00 35.28 1.89
54 55 7.338703 TCGTGGTAGATCAACTCTTGTAATACT 59.661 37.037 0.00 0.00 35.28 2.12
55 56 7.644551 CGTGGTAGATCAACTCTTGTAATACTC 59.355 40.741 0.00 0.00 35.28 2.59
56 57 8.467598 GTGGTAGATCAACTCTTGTAATACTCA 58.532 37.037 0.00 0.00 35.28 3.41
57 58 9.201989 TGGTAGATCAACTCTTGTAATACTCAT 57.798 33.333 0.00 0.00 35.28 2.90
77 78 8.760103 ACTCATATTCATCAAGATCAATCGAG 57.240 34.615 0.00 5.21 0.00 4.04
78 79 7.331440 ACTCATATTCATCAAGATCAATCGAGC 59.669 37.037 0.00 0.00 0.00 5.03
79 80 7.156673 TCATATTCATCAAGATCAATCGAGCA 58.843 34.615 0.00 0.00 0.00 4.26
80 81 5.926214 ATTCATCAAGATCAATCGAGCAG 57.074 39.130 0.00 0.00 0.00 4.24
81 82 4.660789 TCATCAAGATCAATCGAGCAGA 57.339 40.909 0.00 0.00 0.00 4.26
82 83 5.014808 TCATCAAGATCAATCGAGCAGAA 57.985 39.130 0.00 0.00 0.00 3.02
83 84 5.422145 TCATCAAGATCAATCGAGCAGAAA 58.578 37.500 0.00 0.00 0.00 2.52
84 85 5.522824 TCATCAAGATCAATCGAGCAGAAAG 59.477 40.000 0.00 0.00 0.00 2.62
85 86 4.825422 TCAAGATCAATCGAGCAGAAAGT 58.175 39.130 0.00 0.00 0.00 2.66
86 87 5.965922 TCAAGATCAATCGAGCAGAAAGTA 58.034 37.500 0.00 0.00 0.00 2.24
87 88 6.038985 TCAAGATCAATCGAGCAGAAAGTAG 58.961 40.000 0.00 0.00 0.00 2.57
88 89 4.942852 AGATCAATCGAGCAGAAAGTAGG 58.057 43.478 0.00 0.00 0.00 3.18
89 90 3.526931 TCAATCGAGCAGAAAGTAGGG 57.473 47.619 0.00 0.00 0.00 3.53
90 91 2.832129 TCAATCGAGCAGAAAGTAGGGT 59.168 45.455 0.00 0.00 0.00 4.34
91 92 4.021229 TCAATCGAGCAGAAAGTAGGGTA 58.979 43.478 0.00 0.00 0.00 3.69
92 93 4.649674 TCAATCGAGCAGAAAGTAGGGTAT 59.350 41.667 0.00 0.00 0.00 2.73
93 94 5.128827 TCAATCGAGCAGAAAGTAGGGTATT 59.871 40.000 0.00 0.00 0.00 1.89
94 95 6.322969 TCAATCGAGCAGAAAGTAGGGTATTA 59.677 38.462 0.00 0.00 0.00 0.98
95 96 5.511234 TCGAGCAGAAAGTAGGGTATTAC 57.489 43.478 0.00 0.00 0.00 1.89
96 97 4.340381 TCGAGCAGAAAGTAGGGTATTACC 59.660 45.833 4.11 4.11 37.60 2.85
97 98 4.341520 CGAGCAGAAAGTAGGGTATTACCT 59.658 45.833 12.54 2.07 44.75 3.08
98 99 5.507650 CGAGCAGAAAGTAGGGTATTACCTC 60.508 48.000 12.54 3.41 42.09 3.85
99 100 4.654724 AGCAGAAAGTAGGGTATTACCTCC 59.345 45.833 12.54 0.00 42.09 4.30
100 101 4.501058 GCAGAAAGTAGGGTATTACCTCCG 60.501 50.000 12.54 0.00 42.09 4.63
101 102 4.648307 CAGAAAGTAGGGTATTACCTCCGT 59.352 45.833 12.54 0.00 42.09 4.69
102 103 5.829924 CAGAAAGTAGGGTATTACCTCCGTA 59.170 44.000 12.54 0.00 42.09 4.02
103 104 6.016443 CAGAAAGTAGGGTATTACCTCCGTAG 60.016 46.154 12.54 0.00 42.09 3.51
104 105 5.653255 AAGTAGGGTATTACCTCCGTAGA 57.347 43.478 12.54 0.00 42.09 2.59
105 106 5.240013 AGTAGGGTATTACCTCCGTAGAG 57.760 47.826 12.54 0.00 42.09 2.43
106 107 4.910304 AGTAGGGTATTACCTCCGTAGAGA 59.090 45.833 12.54 0.00 43.39 3.10
107 108 4.370094 AGGGTATTACCTCCGTAGAGAG 57.630 50.000 12.54 0.00 43.39 3.20
113 114 2.907917 CTCCGTAGAGAGGGCCCG 60.908 72.222 18.44 1.50 43.39 6.13
114 115 3.414193 TCCGTAGAGAGGGCCCGA 61.414 66.667 18.44 1.01 0.00 5.14
115 116 2.441532 CCGTAGAGAGGGCCCGAA 60.442 66.667 18.44 0.00 0.00 4.30
116 117 2.783288 CCGTAGAGAGGGCCCGAAC 61.783 68.421 18.44 12.45 0.00 3.95
117 118 2.783288 CGTAGAGAGGGCCCGAACC 61.783 68.421 18.44 7.31 0.00 3.62
118 119 1.381463 GTAGAGAGGGCCCGAACCT 60.381 63.158 18.44 14.71 42.18 3.50
119 120 1.381327 TAGAGAGGGCCCGAACCTG 60.381 63.158 18.44 0.00 38.79 4.00
120 121 2.873557 TAGAGAGGGCCCGAACCTGG 62.874 65.000 18.44 0.00 38.79 4.45
128 129 3.970205 CCCGAACCTGGGTAAACAT 57.030 52.632 0.00 0.00 44.76 2.71
129 130 2.209690 CCCGAACCTGGGTAAACATT 57.790 50.000 0.00 0.00 44.76 2.71
130 131 1.816224 CCCGAACCTGGGTAAACATTG 59.184 52.381 0.00 0.00 44.76 2.82
131 132 2.510613 CCGAACCTGGGTAAACATTGT 58.489 47.619 0.00 0.00 0.00 2.71
132 133 2.227865 CCGAACCTGGGTAAACATTGTG 59.772 50.000 0.00 0.00 0.00 3.33
133 134 2.882137 CGAACCTGGGTAAACATTGTGT 59.118 45.455 0.00 0.00 0.00 3.72
134 135 3.058501 CGAACCTGGGTAAACATTGTGTC 60.059 47.826 0.00 0.00 0.00 3.67
135 136 2.871453 ACCTGGGTAAACATTGTGTCC 58.129 47.619 0.00 0.00 0.00 4.02
136 137 2.167662 CCTGGGTAAACATTGTGTCCC 58.832 52.381 13.79 13.79 35.85 4.46
137 138 2.167662 CTGGGTAAACATTGTGTCCCC 58.832 52.381 16.40 10.25 34.88 4.81
138 139 1.783979 TGGGTAAACATTGTGTCCCCT 59.216 47.619 8.93 0.00 35.17 4.79
139 140 2.167662 GGGTAAACATTGTGTCCCCTG 58.832 52.381 0.30 0.00 32.86 4.45
140 141 2.490168 GGGTAAACATTGTGTCCCCTGT 60.490 50.000 0.30 0.00 32.86 4.00
141 142 2.817844 GGTAAACATTGTGTCCCCTGTC 59.182 50.000 0.00 0.00 0.00 3.51
142 143 3.497942 GGTAAACATTGTGTCCCCTGTCT 60.498 47.826 0.00 0.00 0.00 3.41
143 144 2.568623 AACATTGTGTCCCCTGTCTC 57.431 50.000 0.00 0.00 0.00 3.36
144 145 0.693049 ACATTGTGTCCCCTGTCTCC 59.307 55.000 0.00 0.00 0.00 3.71
145 146 0.987294 CATTGTGTCCCCTGTCTCCT 59.013 55.000 0.00 0.00 0.00 3.69
146 147 0.987294 ATTGTGTCCCCTGTCTCCTG 59.013 55.000 0.00 0.00 0.00 3.86
147 148 0.399949 TTGTGTCCCCTGTCTCCTGT 60.400 55.000 0.00 0.00 0.00 4.00
148 149 0.399949 TGTGTCCCCTGTCTCCTGTT 60.400 55.000 0.00 0.00 0.00 3.16
149 150 1.132977 TGTGTCCCCTGTCTCCTGTTA 60.133 52.381 0.00 0.00 0.00 2.41
150 151 1.275573 GTGTCCCCTGTCTCCTGTTAC 59.724 57.143 0.00 0.00 0.00 2.50
151 152 0.903236 GTCCCCTGTCTCCTGTTACC 59.097 60.000 0.00 0.00 0.00 2.85
152 153 0.490017 TCCCCTGTCTCCTGTTACCA 59.510 55.000 0.00 0.00 0.00 3.25
153 154 1.080498 TCCCCTGTCTCCTGTTACCAT 59.920 52.381 0.00 0.00 0.00 3.55
154 155 1.486726 CCCCTGTCTCCTGTTACCATC 59.513 57.143 0.00 0.00 0.00 3.51
155 156 1.137086 CCCTGTCTCCTGTTACCATCG 59.863 57.143 0.00 0.00 0.00 3.84
156 157 2.100197 CCTGTCTCCTGTTACCATCGA 58.900 52.381 0.00 0.00 0.00 3.59
157 158 2.159226 CCTGTCTCCTGTTACCATCGAC 60.159 54.545 0.00 0.00 0.00 4.20
158 159 1.822990 TGTCTCCTGTTACCATCGACC 59.177 52.381 0.00 0.00 0.00 4.79
159 160 2.100989 GTCTCCTGTTACCATCGACCT 58.899 52.381 0.00 0.00 0.00 3.85
160 161 2.496470 GTCTCCTGTTACCATCGACCTT 59.504 50.000 0.00 0.00 0.00 3.50
161 162 3.698040 GTCTCCTGTTACCATCGACCTTA 59.302 47.826 0.00 0.00 0.00 2.69
162 163 3.952323 TCTCCTGTTACCATCGACCTTAG 59.048 47.826 0.00 0.00 0.00 2.18
163 164 3.952323 CTCCTGTTACCATCGACCTTAGA 59.048 47.826 0.00 0.00 0.00 2.10
164 165 3.698040 TCCTGTTACCATCGACCTTAGAC 59.302 47.826 0.00 0.00 0.00 2.59
165 166 3.488721 CCTGTTACCATCGACCTTAGACG 60.489 52.174 0.00 0.00 0.00 4.18
166 167 2.159338 TGTTACCATCGACCTTAGACGC 60.159 50.000 0.00 0.00 0.00 5.19
167 168 1.753930 TACCATCGACCTTAGACGCA 58.246 50.000 0.00 0.00 0.00 5.24
168 169 0.172803 ACCATCGACCTTAGACGCAC 59.827 55.000 0.00 0.00 0.00 5.34
169 170 0.172578 CCATCGACCTTAGACGCACA 59.827 55.000 0.00 0.00 0.00 4.57
170 171 1.550065 CATCGACCTTAGACGCACAG 58.450 55.000 0.00 0.00 0.00 3.66
171 172 1.135373 CATCGACCTTAGACGCACAGT 60.135 52.381 0.00 0.00 0.00 3.55
172 173 0.956633 TCGACCTTAGACGCACAGTT 59.043 50.000 0.00 0.00 0.00 3.16
173 174 1.068748 TCGACCTTAGACGCACAGTTC 60.069 52.381 0.00 0.00 0.00 3.01
174 175 1.337821 GACCTTAGACGCACAGTTCG 58.662 55.000 0.00 0.00 0.00 3.95
175 176 0.038526 ACCTTAGACGCACAGTTCGG 60.039 55.000 0.00 0.00 0.00 4.30
176 177 0.736325 CCTTAGACGCACAGTTCGGG 60.736 60.000 0.00 0.00 0.00 5.14
177 178 0.242825 CTTAGACGCACAGTTCGGGA 59.757 55.000 0.00 0.00 0.00 5.14
178 179 0.038892 TTAGACGCACAGTTCGGGAC 60.039 55.000 0.00 0.00 0.00 4.46
179 180 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
180 181 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
181 182 4.003788 CGCACAGTTCGGGACCCT 62.004 66.667 9.41 0.00 0.00 4.34
182 183 2.047179 GCACAGTTCGGGACCCTC 60.047 66.667 9.41 0.00 0.00 4.30
183 184 2.584391 GCACAGTTCGGGACCCTCT 61.584 63.158 9.41 1.35 0.00 3.69
184 185 1.255667 GCACAGTTCGGGACCCTCTA 61.256 60.000 9.41 0.00 0.00 2.43
185 186 0.531200 CACAGTTCGGGACCCTCTAC 59.469 60.000 9.41 3.72 0.00 2.59
186 187 0.614134 ACAGTTCGGGACCCTCTACC 60.614 60.000 9.41 0.00 0.00 3.18
187 188 1.001376 AGTTCGGGACCCTCTACCC 59.999 63.158 9.41 0.00 42.43 3.69
191 192 3.013631 GGGACCCTCTACCCGAGA 58.986 66.667 2.09 0.00 42.62 4.04
192 193 1.542679 GGGACCCTCTACCCGAGAT 59.457 63.158 2.09 0.00 42.62 2.75
193 194 0.540133 GGGACCCTCTACCCGAGATC 60.540 65.000 2.09 0.00 42.62 2.75
194 195 0.540133 GGACCCTCTACCCGAGATCC 60.540 65.000 0.00 0.00 42.62 3.36
195 196 0.890090 GACCCTCTACCCGAGATCCG 60.890 65.000 0.00 0.00 42.62 4.18
196 197 2.269529 CCCTCTACCCGAGATCCGC 61.270 68.421 0.00 0.00 42.62 5.54
197 198 2.269529 CCTCTACCCGAGATCCGCC 61.270 68.421 0.00 0.00 42.62 6.13
198 199 2.593725 TCTACCCGAGATCCGCCG 60.594 66.667 0.00 0.00 36.84 6.46
199 200 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
200 201 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
202 203 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
203 204 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
204 205 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
205 206 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
206 207 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
207 208 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
208 209 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
209 210 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
217 218 0.666374 GGTTTTGACACCGACAAGGG 59.334 55.000 0.00 0.00 46.96 3.95
218 219 0.030235 GTTTTGACACCGACAAGGGC 59.970 55.000 0.00 0.00 46.96 5.19
219 220 0.394488 TTTTGACACCGACAAGGGCA 60.394 50.000 0.00 0.00 46.96 5.36
220 221 0.817634 TTTGACACCGACAAGGGCAG 60.818 55.000 0.00 0.00 46.96 4.85
221 222 3.050275 GACACCGACAAGGGCAGC 61.050 66.667 0.00 0.00 46.96 5.25
222 223 3.825160 GACACCGACAAGGGCAGCA 62.825 63.158 0.00 0.00 46.96 4.41
223 224 3.052082 CACCGACAAGGGCAGCAG 61.052 66.667 0.00 0.00 46.96 4.24
224 225 3.241530 ACCGACAAGGGCAGCAGA 61.242 61.111 0.00 0.00 46.96 4.26
225 226 2.435586 CCGACAAGGGCAGCAGAG 60.436 66.667 0.00 0.00 35.97 3.35
226 227 3.123620 CGACAAGGGCAGCAGAGC 61.124 66.667 0.00 0.00 0.00 4.09
238 239 4.803426 CAGAGCCTCGTCGCCACC 62.803 72.222 0.00 0.00 0.00 4.61
240 241 4.070552 GAGCCTCGTCGCCACCTT 62.071 66.667 0.00 0.00 0.00 3.50
241 242 3.991536 GAGCCTCGTCGCCACCTTC 62.992 68.421 0.00 0.00 0.00 3.46
242 243 4.373116 GCCTCGTCGCCACCTTCA 62.373 66.667 0.00 0.00 0.00 3.02
243 244 2.579201 CCTCGTCGCCACCTTCAT 59.421 61.111 0.00 0.00 0.00 2.57
244 245 1.079127 CCTCGTCGCCACCTTCATT 60.079 57.895 0.00 0.00 0.00 2.57
245 246 1.361668 CCTCGTCGCCACCTTCATTG 61.362 60.000 0.00 0.00 0.00 2.82
246 247 1.361668 CTCGTCGCCACCTTCATTGG 61.362 60.000 0.00 0.00 37.17 3.16
247 248 1.375396 CGTCGCCACCTTCATTGGA 60.375 57.895 0.00 0.00 36.02 3.53
248 249 1.361668 CGTCGCCACCTTCATTGGAG 61.362 60.000 0.00 0.00 36.02 3.86
249 250 1.026718 GTCGCCACCTTCATTGGAGG 61.027 60.000 9.65 9.65 40.23 4.30
251 252 4.344237 CCACCTTCATTGGAGGCC 57.656 61.111 11.20 0.00 36.02 5.19
252 253 1.383799 CCACCTTCATTGGAGGCCA 59.616 57.895 11.20 0.00 36.02 5.36
253 254 0.967380 CCACCTTCATTGGAGGCCAC 60.967 60.000 11.20 0.00 36.02 5.01
254 255 0.251297 CACCTTCATTGGAGGCCACA 60.251 55.000 11.20 0.00 30.78 4.17
255 256 0.251341 ACCTTCATTGGAGGCCACAC 60.251 55.000 11.20 0.00 30.78 3.82
256 257 0.251297 CCTTCATTGGAGGCCACACA 60.251 55.000 5.01 0.00 30.78 3.72
257 258 1.171308 CTTCATTGGAGGCCACACAG 58.829 55.000 5.01 0.00 30.78 3.66
258 259 0.895100 TTCATTGGAGGCCACACAGC 60.895 55.000 5.01 0.00 30.78 4.40
259 260 1.303888 CATTGGAGGCCACACAGCT 60.304 57.895 5.01 0.00 30.78 4.24
260 261 1.303888 ATTGGAGGCCACACAGCTG 60.304 57.895 13.48 13.48 30.78 4.24
261 262 2.776370 ATTGGAGGCCACACAGCTGG 62.776 60.000 19.93 9.66 30.78 4.85
262 263 4.729918 GGAGGCCACACAGCTGGG 62.730 72.222 16.28 16.28 0.00 4.45
282 283 4.452733 GGCGGAGTCCTCGGGTTG 62.453 72.222 7.77 0.00 0.00 3.77
283 284 3.692406 GCGGAGTCCTCGGGTTGT 61.692 66.667 7.77 0.00 0.00 3.32
284 285 2.261671 CGGAGTCCTCGGGTTGTG 59.738 66.667 7.77 0.00 0.00 3.33
285 286 2.663196 GGAGTCCTCGGGTTGTGG 59.337 66.667 0.41 0.00 0.00 4.17
286 287 2.047179 GAGTCCTCGGGTTGTGGC 60.047 66.667 0.00 0.00 0.00 5.01
287 288 2.847234 AGTCCTCGGGTTGTGGCA 60.847 61.111 0.00 0.00 0.00 4.92
288 289 2.358737 GTCCTCGGGTTGTGGCAG 60.359 66.667 0.00 0.00 0.00 4.85
289 290 3.636231 TCCTCGGGTTGTGGCAGG 61.636 66.667 0.00 0.00 0.00 4.85
290 291 4.722700 CCTCGGGTTGTGGCAGGG 62.723 72.222 0.00 0.00 0.00 4.45
291 292 3.636231 CTCGGGTTGTGGCAGGGA 61.636 66.667 0.00 0.00 0.00 4.20
292 293 3.612247 CTCGGGTTGTGGCAGGGAG 62.612 68.421 0.00 0.00 0.00 4.30
293 294 4.722700 CGGGTTGTGGCAGGGAGG 62.723 72.222 0.00 0.00 0.00 4.30
294 295 4.366684 GGGTTGTGGCAGGGAGGG 62.367 72.222 0.00 0.00 0.00 4.30
295 296 4.366684 GGTTGTGGCAGGGAGGGG 62.367 72.222 0.00 0.00 0.00 4.79
296 297 4.366684 GTTGTGGCAGGGAGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
297 298 4.608514 TTGTGGCAGGGAGGGGGA 62.609 66.667 0.00 0.00 0.00 4.81
298 299 4.608514 TGTGGCAGGGAGGGGGAA 62.609 66.667 0.00 0.00 0.00 3.97
299 300 3.264845 GTGGCAGGGAGGGGGAAA 61.265 66.667 0.00 0.00 0.00 3.13
300 301 2.941025 TGGCAGGGAGGGGGAAAG 60.941 66.667 0.00 0.00 0.00 2.62
301 302 3.744155 GGCAGGGAGGGGGAAAGG 61.744 72.222 0.00 0.00 0.00 3.11
302 303 3.744155 GCAGGGAGGGGGAAAGGG 61.744 72.222 0.00 0.00 0.00 3.95
303 304 3.023735 CAGGGAGGGGGAAAGGGG 61.024 72.222 0.00 0.00 0.00 4.79
304 305 4.387765 AGGGAGGGGGAAAGGGGG 62.388 72.222 0.00 0.00 0.00 5.40
305 306 4.381121 GGGAGGGGGAAAGGGGGA 62.381 72.222 0.00 0.00 0.00 4.81
306 307 2.204401 GGAGGGGGAAAGGGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
307 308 2.317378 GGAGGGGGAAAGGGGGAAG 61.317 68.421 0.00 0.00 0.00 3.46
308 309 2.204464 AGGGGGAAAGGGGGAAGG 60.204 66.667 0.00 0.00 0.00 3.46
309 310 2.204401 GGGGGAAAGGGGGAAGGA 60.204 66.667 0.00 0.00 0.00 3.36
310 311 2.317378 GGGGGAAAGGGGGAAGGAG 61.317 68.421 0.00 0.00 0.00 3.69
311 312 2.317378 GGGGAAAGGGGGAAGGAGG 61.317 68.421 0.00 0.00 0.00 4.30
312 313 2.317378 GGGAAAGGGGGAAGGAGGG 61.317 68.421 0.00 0.00 0.00 4.30
313 314 1.544151 GGAAAGGGGGAAGGAGGGT 60.544 63.158 0.00 0.00 0.00 4.34
314 315 1.147190 GGAAAGGGGGAAGGAGGGTT 61.147 60.000 0.00 0.00 0.00 4.11
315 316 0.331954 GAAAGGGGGAAGGAGGGTTC 59.668 60.000 0.00 0.00 0.00 3.62
316 317 1.498176 AAAGGGGGAAGGAGGGTTCG 61.498 60.000 0.00 0.00 0.00 3.95
317 318 2.285144 GGGGGAAGGAGGGTTCGA 60.285 66.667 0.00 0.00 0.00 3.71
318 319 2.368011 GGGGGAAGGAGGGTTCGAG 61.368 68.421 0.00 0.00 0.00 4.04
319 320 1.612739 GGGGAAGGAGGGTTCGAGT 60.613 63.158 0.00 0.00 0.00 4.18
320 321 1.615165 GGGGAAGGAGGGTTCGAGTC 61.615 65.000 0.00 0.00 0.00 3.36
321 322 1.511768 GGAAGGAGGGTTCGAGTCG 59.488 63.158 6.09 6.09 0.00 4.18
322 323 1.153804 GAAGGAGGGTTCGAGTCGC 60.154 63.158 7.92 0.00 0.00 5.19
323 324 1.596895 GAAGGAGGGTTCGAGTCGCT 61.597 60.000 7.92 8.49 0.00 4.93
324 325 0.323178 AAGGAGGGTTCGAGTCGCTA 60.323 55.000 7.92 0.00 0.00 4.26
325 326 0.748729 AGGAGGGTTCGAGTCGCTAG 60.749 60.000 7.92 0.00 0.00 3.42
326 327 1.726533 GGAGGGTTCGAGTCGCTAGG 61.727 65.000 7.92 0.00 0.00 3.02
327 328 1.726533 GAGGGTTCGAGTCGCTAGGG 61.727 65.000 7.92 0.00 0.00 3.53
328 329 2.050934 GGGTTCGAGTCGCTAGGGT 61.051 63.158 7.92 0.00 0.00 4.34
329 330 0.749454 GGGTTCGAGTCGCTAGGGTA 60.749 60.000 7.92 0.00 0.00 3.69
330 331 0.380024 GGTTCGAGTCGCTAGGGTAC 59.620 60.000 7.92 4.26 0.00 3.34
331 332 0.027324 GTTCGAGTCGCTAGGGTACG 59.973 60.000 7.92 10.72 0.00 3.67
332 333 1.091771 TTCGAGTCGCTAGGGTACGG 61.092 60.000 7.92 2.94 0.00 4.02
333 334 1.817099 CGAGTCGCTAGGGTACGGT 60.817 63.158 0.00 0.00 0.00 4.83
334 335 1.770085 CGAGTCGCTAGGGTACGGTC 61.770 65.000 0.00 0.00 0.00 4.79
697 720 0.034767 TTCTCTGCAAGCCCAGATGG 60.035 55.000 0.00 0.00 40.77 3.51
760 787 1.407656 GGGGAGCGGTGGATCACATA 61.408 60.000 0.00 0.00 32.24 2.29
761 788 0.034059 GGGAGCGGTGGATCACATAG 59.966 60.000 0.00 0.00 35.86 2.23
965 1000 4.499116 ATCCACCCTCCCCTCCCG 62.499 72.222 0.00 0.00 0.00 5.14
970 1005 4.416601 CCCTCCCCTCCCGTCCTT 62.417 72.222 0.00 0.00 0.00 3.36
975 1010 2.043652 CCCTCCCGTCCTTACCGA 60.044 66.667 0.00 0.00 0.00 4.69
1122 1170 0.811915 CGACTCTGACCCATTCTCGT 59.188 55.000 0.00 0.00 0.00 4.18
1123 1171 1.468224 CGACTCTGACCCATTCTCGTG 60.468 57.143 0.00 0.00 0.00 4.35
1124 1172 0.247736 ACTCTGACCCATTCTCGTGC 59.752 55.000 0.00 0.00 0.00 5.34
1136 1184 0.039437 TCTCGTGCGTTCCTGTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
1273 1322 1.080569 CGGCTGATTTTGTGGTGGC 60.081 57.895 0.00 0.00 0.00 5.01
1418 1467 1.143073 GACTTTGACCTTGGACCCTGT 59.857 52.381 0.00 0.00 0.00 4.00
1419 1468 1.569072 ACTTTGACCTTGGACCCTGTT 59.431 47.619 0.00 0.00 0.00 3.16
1485 1536 0.753867 TCAAGACCTGCCACAACGTA 59.246 50.000 0.00 0.00 0.00 3.57
1512 1566 4.101856 CCACTCCTCCCCTACTTTTTAGA 58.898 47.826 0.00 0.00 0.00 2.10
1522 1576 7.159372 TCCCCTACTTTTTAGATCGCATATTC 58.841 38.462 0.00 0.00 0.00 1.75
1533 1587 3.129852 TCGCATATTCGGTTTGCTTTG 57.870 42.857 0.00 0.00 34.23 2.77
1537 1591 4.098416 GCATATTCGGTTTGCTTTGAGTC 58.902 43.478 0.00 0.00 33.61 3.36
1547 1602 6.306397 GGTTTGCTTTGAGTCAAACTTTTTG 58.694 36.000 14.35 5.19 46.62 2.44
1550 1605 7.721286 TTGCTTTGAGTCAAACTTTTTGAAA 57.279 28.000 14.35 2.23 0.00 2.69
1615 1672 8.199449 ACACCAAATCAATATCATTGGATTCAC 58.801 33.333 10.14 0.00 44.01 3.18
1624 1681 9.244799 CAATATCATTGGATTCACTGTGAAATG 57.755 33.333 25.26 21.96 40.12 2.32
1754 1816 3.187700 CGGAGGGAGTAATTCAGTTTCG 58.812 50.000 0.00 0.00 0.00 3.46
1765 1827 1.807573 CAGTTTCGGCGGCTCTCTC 60.808 63.158 7.21 0.00 0.00 3.20
1906 1969 2.157085 GTCGACCTTTTTACTGCCTTCG 59.843 50.000 3.51 0.00 0.00 3.79
1907 1970 1.463444 CGACCTTTTTACTGCCTTCGG 59.537 52.381 0.00 0.00 0.00 4.30
1949 2012 5.266733 ACATTTCAAGCTCACATTGTGTT 57.733 34.783 16.06 1.26 34.79 3.32
1982 2045 5.503634 TCAAGGACATCAAGGAAATCAGA 57.496 39.130 0.00 0.00 0.00 3.27
1984 2047 6.487828 TCAAGGACATCAAGGAAATCAGATT 58.512 36.000 0.00 0.00 0.00 2.40
2016 2079 2.091852 AGAGAAGGCAAGCTCGAAAG 57.908 50.000 0.00 0.00 36.29 2.62
2059 2122 3.527507 AGACCAGGTACTCAAGACTGA 57.472 47.619 0.00 0.00 34.60 3.41
2072 2135 4.825422 TCAAGACTGATGATGAACAGACC 58.175 43.478 0.00 0.00 37.54 3.85
2113 2176 1.153389 CATGAAATTTGCGGCCCCC 60.153 57.895 0.00 0.00 0.00 5.40
2214 2289 3.498774 TCAGGAGGGGTAGATACGTAC 57.501 52.381 0.00 0.00 0.00 3.67
2328 2403 8.029642 AGAGTGAAACGTTATAAAATGGACAG 57.970 34.615 0.00 0.00 45.86 3.51
2351 2426 8.082242 ACAGGAATTGCTTATTTTGTAACAGTC 58.918 33.333 0.00 0.00 0.00 3.51
2581 2659 4.141620 ACTTCCAGAGAGCAGAACTTTTCA 60.142 41.667 0.00 0.00 0.00 2.69
2628 2706 3.127352 GATCTCCGCTCGTCGCCTT 62.127 63.158 0.00 0.00 36.73 4.35
2840 2918 5.154222 GTGCCACTATAAGCAAACAGAAAC 58.846 41.667 0.00 0.00 41.48 2.78
2843 2921 6.371548 TGCCACTATAAGCAAACAGAAACTAG 59.628 38.462 0.00 0.00 35.69 2.57
2861 2939 6.536731 AACTAGTCATCGATTGCATGATTC 57.463 37.500 0.00 0.00 32.86 2.52
2976 3054 0.114168 TGCCAACCTAATTGCCACCT 59.886 50.000 0.00 0.00 36.93 4.00
2986 3064 0.251474 ATTGCCACCTCATGCTGTGT 60.251 50.000 11.81 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.163437 CGTAATGGCTAAACCCTAGAAGTCT 60.163 44.000 0.00 0.00 37.83 3.24
1 2 5.048507 CGTAATGGCTAAACCCTAGAAGTC 58.951 45.833 0.00 0.00 37.83 3.01
2 3 4.713321 TCGTAATGGCTAAACCCTAGAAGT 59.287 41.667 0.00 0.00 37.83 3.01
3 4 5.272283 TCGTAATGGCTAAACCCTAGAAG 57.728 43.478 0.00 0.00 37.83 2.85
4 5 5.601313 AGATCGTAATGGCTAAACCCTAGAA 59.399 40.000 0.00 0.00 37.83 2.10
5 6 5.145564 AGATCGTAATGGCTAAACCCTAGA 58.854 41.667 0.00 0.00 37.83 2.43
6 7 5.470047 AGATCGTAATGGCTAAACCCTAG 57.530 43.478 0.00 0.00 37.83 3.02
7 8 4.022589 CGAGATCGTAATGGCTAAACCCTA 60.023 45.833 0.00 0.00 33.83 3.53
8 9 3.243771 CGAGATCGTAATGGCTAAACCCT 60.244 47.826 0.00 0.00 33.83 4.34
9 10 3.057734 CGAGATCGTAATGGCTAAACCC 58.942 50.000 0.00 0.00 33.83 4.11
25 26 4.707448 ACAAGAGTTGATCTACCACGAGAT 59.293 41.667 3.54 0.00 37.23 2.75
26 27 4.079970 ACAAGAGTTGATCTACCACGAGA 58.920 43.478 3.54 0.00 37.23 4.04
27 28 4.442375 ACAAGAGTTGATCTACCACGAG 57.558 45.455 3.54 1.07 37.23 4.18
28 29 5.970317 TTACAAGAGTTGATCTACCACGA 57.030 39.130 3.54 0.00 37.23 4.35
29 30 7.481642 AGTATTACAAGAGTTGATCTACCACG 58.518 38.462 3.54 0.00 37.23 4.94
30 31 8.467598 TGAGTATTACAAGAGTTGATCTACCAC 58.532 37.037 3.54 0.00 37.23 4.16
31 32 8.589701 TGAGTATTACAAGAGTTGATCTACCA 57.410 34.615 3.54 0.00 37.23 3.25
51 52 9.852091 CTCGATTGATCTTGATGAATATGAGTA 57.148 33.333 12.13 0.00 0.00 2.59
52 53 7.331440 GCTCGATTGATCTTGATGAATATGAGT 59.669 37.037 17.10 0.00 0.00 3.41
53 54 7.331193 TGCTCGATTGATCTTGATGAATATGAG 59.669 37.037 14.25 14.25 0.00 2.90
54 55 7.156673 TGCTCGATTGATCTTGATGAATATGA 58.843 34.615 0.00 0.00 0.00 2.15
55 56 7.331193 TCTGCTCGATTGATCTTGATGAATATG 59.669 37.037 0.00 0.00 0.00 1.78
56 57 7.384477 TCTGCTCGATTGATCTTGATGAATAT 58.616 34.615 0.00 0.00 0.00 1.28
57 58 6.752168 TCTGCTCGATTGATCTTGATGAATA 58.248 36.000 0.00 0.00 0.00 1.75
58 59 5.608449 TCTGCTCGATTGATCTTGATGAAT 58.392 37.500 0.00 0.00 0.00 2.57
59 60 5.014808 TCTGCTCGATTGATCTTGATGAA 57.985 39.130 0.00 0.00 0.00 2.57
60 61 4.660789 TCTGCTCGATTGATCTTGATGA 57.339 40.909 0.00 0.00 0.00 2.92
61 62 5.293814 ACTTTCTGCTCGATTGATCTTGATG 59.706 40.000 0.00 0.00 0.00 3.07
62 63 5.426504 ACTTTCTGCTCGATTGATCTTGAT 58.573 37.500 0.00 0.00 0.00 2.57
63 64 4.825422 ACTTTCTGCTCGATTGATCTTGA 58.175 39.130 0.00 0.00 0.00 3.02
64 65 5.233902 CCTACTTTCTGCTCGATTGATCTTG 59.766 44.000 0.00 0.00 0.00 3.02
65 66 5.355596 CCTACTTTCTGCTCGATTGATCTT 58.644 41.667 0.00 0.00 0.00 2.40
66 67 4.202202 CCCTACTTTCTGCTCGATTGATCT 60.202 45.833 0.00 0.00 0.00 2.75
67 68 4.054671 CCCTACTTTCTGCTCGATTGATC 58.945 47.826 0.00 0.00 0.00 2.92
68 69 3.452627 ACCCTACTTTCTGCTCGATTGAT 59.547 43.478 0.00 0.00 0.00 2.57
69 70 2.832129 ACCCTACTTTCTGCTCGATTGA 59.168 45.455 0.00 0.00 0.00 2.57
70 71 3.252974 ACCCTACTTTCTGCTCGATTG 57.747 47.619 0.00 0.00 0.00 2.67
71 72 5.615925 AATACCCTACTTTCTGCTCGATT 57.384 39.130 0.00 0.00 0.00 3.34
72 73 5.010820 GGTAATACCCTACTTTCTGCTCGAT 59.989 44.000 0.00 0.00 30.04 3.59
73 74 4.340381 GGTAATACCCTACTTTCTGCTCGA 59.660 45.833 0.00 0.00 30.04 4.04
74 75 4.341520 AGGTAATACCCTACTTTCTGCTCG 59.658 45.833 5.71 0.00 39.75 5.03
75 76 5.221481 GGAGGTAATACCCTACTTTCTGCTC 60.221 48.000 5.71 0.00 39.75 4.26
76 77 4.654724 GGAGGTAATACCCTACTTTCTGCT 59.345 45.833 5.71 0.00 39.75 4.24
77 78 4.501058 CGGAGGTAATACCCTACTTTCTGC 60.501 50.000 5.71 0.00 39.75 4.26
78 79 4.648307 ACGGAGGTAATACCCTACTTTCTG 59.352 45.833 5.71 3.82 39.75 3.02
79 80 4.876580 ACGGAGGTAATACCCTACTTTCT 58.123 43.478 5.71 0.00 39.75 2.52
80 81 6.064717 TCTACGGAGGTAATACCCTACTTTC 58.935 44.000 5.71 0.00 39.75 2.62
81 82 6.018433 TCTACGGAGGTAATACCCTACTTT 57.982 41.667 5.71 0.00 39.75 2.66
82 83 5.370880 TCTCTACGGAGGTAATACCCTACTT 59.629 44.000 5.71 0.00 39.75 2.24
83 84 4.910304 TCTCTACGGAGGTAATACCCTACT 59.090 45.833 5.71 0.00 39.75 2.57
84 85 5.234466 TCTCTACGGAGGTAATACCCTAC 57.766 47.826 5.71 0.00 39.75 3.18
85 86 4.288105 CCTCTCTACGGAGGTAATACCCTA 59.712 50.000 5.71 0.00 45.65 3.53
86 87 3.074242 CCTCTCTACGGAGGTAATACCCT 59.926 52.174 5.71 0.00 45.65 4.34
87 88 3.419943 CCTCTCTACGGAGGTAATACCC 58.580 54.545 5.71 0.00 45.65 3.69
96 97 2.905935 TTCGGGCCCTCTCTACGGAG 62.906 65.000 22.43 0.00 40.73 4.63
97 98 2.987596 TTCGGGCCCTCTCTACGGA 61.988 63.158 22.43 3.53 0.00 4.69
98 99 2.441532 TTCGGGCCCTCTCTACGG 60.442 66.667 22.43 0.54 0.00 4.02
99 100 2.783288 GGTTCGGGCCCTCTCTACG 61.783 68.421 22.43 4.31 0.00 3.51
100 101 1.381463 AGGTTCGGGCCCTCTCTAC 60.381 63.158 22.43 9.97 0.00 2.59
101 102 1.381327 CAGGTTCGGGCCCTCTCTA 60.381 63.158 22.43 0.00 0.00 2.43
102 103 2.685380 CAGGTTCGGGCCCTCTCT 60.685 66.667 22.43 9.12 0.00 3.10
103 104 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
111 112 2.227865 CACAATGTTTACCCAGGTTCGG 59.772 50.000 0.00 0.00 0.00 4.30
112 113 2.882137 ACACAATGTTTACCCAGGTTCG 59.118 45.455 0.00 0.00 0.00 3.95
113 114 3.254903 GGACACAATGTTTACCCAGGTTC 59.745 47.826 0.00 0.00 0.00 3.62
114 115 3.227614 GGACACAATGTTTACCCAGGTT 58.772 45.455 0.00 0.00 0.00 3.50
115 116 2.490168 GGGACACAATGTTTACCCAGGT 60.490 50.000 12.30 0.00 37.50 4.00
116 117 2.167662 GGGACACAATGTTTACCCAGG 58.832 52.381 12.30 0.00 37.50 4.45
117 118 2.167662 GGGGACACAATGTTTACCCAG 58.832 52.381 14.80 0.00 38.30 4.45
118 119 1.783979 AGGGGACACAATGTTTACCCA 59.216 47.619 21.11 0.00 39.80 4.51
119 120 2.167662 CAGGGGACACAATGTTTACCC 58.832 52.381 11.92 11.92 38.53 3.69
120 121 2.817844 GACAGGGGACACAATGTTTACC 59.182 50.000 0.00 0.00 0.00 2.85
121 122 3.751518 AGACAGGGGACACAATGTTTAC 58.248 45.455 0.00 0.00 0.00 2.01
122 123 3.244770 GGAGACAGGGGACACAATGTTTA 60.245 47.826 0.00 0.00 0.00 2.01
123 124 2.489073 GGAGACAGGGGACACAATGTTT 60.489 50.000 0.00 0.00 0.00 2.83
124 125 1.073923 GGAGACAGGGGACACAATGTT 59.926 52.381 0.00 0.00 0.00 2.71
125 126 0.693049 GGAGACAGGGGACACAATGT 59.307 55.000 0.00 0.00 0.00 2.71
126 127 0.987294 AGGAGACAGGGGACACAATG 59.013 55.000 0.00 0.00 0.00 2.82
127 128 0.987294 CAGGAGACAGGGGACACAAT 59.013 55.000 0.00 0.00 0.00 2.71
128 129 0.399949 ACAGGAGACAGGGGACACAA 60.400 55.000 0.00 0.00 0.00 3.33
129 130 0.399949 AACAGGAGACAGGGGACACA 60.400 55.000 0.00 0.00 0.00 3.72
130 131 1.275573 GTAACAGGAGACAGGGGACAC 59.724 57.143 0.00 0.00 0.00 3.67
131 132 1.640917 GTAACAGGAGACAGGGGACA 58.359 55.000 0.00 0.00 0.00 4.02
132 133 0.903236 GGTAACAGGAGACAGGGGAC 59.097 60.000 0.00 0.00 0.00 4.46
133 134 0.490017 TGGTAACAGGAGACAGGGGA 59.510 55.000 0.00 0.00 46.17 4.81
134 135 3.082619 TGGTAACAGGAGACAGGGG 57.917 57.895 0.00 0.00 46.17 4.79
146 147 2.159338 TGCGTCTAAGGTCGATGGTAAC 60.159 50.000 0.00 0.00 0.00 2.50
147 148 2.093890 TGCGTCTAAGGTCGATGGTAA 58.906 47.619 0.00 0.00 0.00 2.85
148 149 1.402968 GTGCGTCTAAGGTCGATGGTA 59.597 52.381 0.00 0.00 0.00 3.25
149 150 0.172803 GTGCGTCTAAGGTCGATGGT 59.827 55.000 0.00 0.00 0.00 3.55
150 151 0.172578 TGTGCGTCTAAGGTCGATGG 59.827 55.000 0.00 0.00 0.00 3.51
151 152 1.135373 ACTGTGCGTCTAAGGTCGATG 60.135 52.381 0.00 0.00 0.00 3.84
152 153 1.174783 ACTGTGCGTCTAAGGTCGAT 58.825 50.000 0.00 0.00 0.00 3.59
153 154 0.956633 AACTGTGCGTCTAAGGTCGA 59.043 50.000 0.00 0.00 0.00 4.20
154 155 1.337821 GAACTGTGCGTCTAAGGTCG 58.662 55.000 0.00 0.00 0.00 4.79
155 156 1.337821 CGAACTGTGCGTCTAAGGTC 58.662 55.000 0.00 0.00 0.00 3.85
156 157 0.038526 CCGAACTGTGCGTCTAAGGT 60.039 55.000 7.51 0.00 0.00 3.50
157 158 0.736325 CCCGAACTGTGCGTCTAAGG 60.736 60.000 7.51 0.00 0.00 2.69
158 159 0.242825 TCCCGAACTGTGCGTCTAAG 59.757 55.000 7.51 0.00 0.00 2.18
159 160 0.038892 GTCCCGAACTGTGCGTCTAA 60.039 55.000 7.51 0.00 0.00 2.10
160 161 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
161 162 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
162 163 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
163 164 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
164 165 3.934391 GAGGGTCCCGAACTGTGCG 62.934 68.421 0.99 0.00 0.00 5.34
165 166 1.255667 TAGAGGGTCCCGAACTGTGC 61.256 60.000 0.99 0.00 0.00 4.57
166 167 0.531200 GTAGAGGGTCCCGAACTGTG 59.469 60.000 0.99 0.00 0.00 3.66
167 168 0.614134 GGTAGAGGGTCCCGAACTGT 60.614 60.000 0.99 0.00 0.00 3.55
168 169 1.328430 GGGTAGAGGGTCCCGAACTG 61.328 65.000 0.99 0.00 33.97 3.16
169 170 1.001376 GGGTAGAGGGTCCCGAACT 59.999 63.158 0.99 6.42 33.97 3.01
170 171 3.626394 GGGTAGAGGGTCCCGAAC 58.374 66.667 0.99 1.95 33.97 3.95
174 175 0.540133 GATCTCGGGTAGAGGGTCCC 60.540 65.000 0.00 0.00 46.82 4.46
175 176 0.540133 GGATCTCGGGTAGAGGGTCC 60.540 65.000 0.00 1.08 46.82 4.46
176 177 0.890090 CGGATCTCGGGTAGAGGGTC 60.890 65.000 0.00 0.00 46.82 4.46
177 178 1.150992 CGGATCTCGGGTAGAGGGT 59.849 63.158 0.00 0.00 46.82 4.34
178 179 2.269529 GCGGATCTCGGGTAGAGGG 61.270 68.421 5.87 0.00 46.82 4.30
179 180 2.269529 GGCGGATCTCGGGTAGAGG 61.270 68.421 5.87 0.00 46.82 3.69
181 182 2.593725 CGGCGGATCTCGGGTAGA 60.594 66.667 0.00 0.00 39.69 2.59
182 183 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
187 188 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
188 189 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
189 190 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
190 191 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
191 192 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
192 193 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
198 199 0.666374 CCCTTGTCGGTGTCAAAACC 59.334 55.000 0.00 0.00 36.82 3.27
199 200 0.030235 GCCCTTGTCGGTGTCAAAAC 59.970 55.000 0.00 0.00 0.00 2.43
200 201 0.394488 TGCCCTTGTCGGTGTCAAAA 60.394 50.000 0.00 0.00 0.00 2.44
201 202 0.817634 CTGCCCTTGTCGGTGTCAAA 60.818 55.000 0.00 0.00 0.00 2.69
202 203 1.227823 CTGCCCTTGTCGGTGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
203 204 2.425592 CTGCCCTTGTCGGTGTCA 59.574 61.111 0.00 0.00 0.00 3.58
204 205 3.050275 GCTGCCCTTGTCGGTGTC 61.050 66.667 0.00 0.00 0.00 3.67
205 206 3.832237 CTGCTGCCCTTGTCGGTGT 62.832 63.158 0.00 0.00 0.00 4.16
206 207 3.052082 CTGCTGCCCTTGTCGGTG 61.052 66.667 0.00 0.00 0.00 4.94
207 208 3.241530 TCTGCTGCCCTTGTCGGT 61.242 61.111 0.00 0.00 0.00 4.69
208 209 2.435586 CTCTGCTGCCCTTGTCGG 60.436 66.667 0.00 0.00 0.00 4.79
209 210 3.123620 GCTCTGCTGCCCTTGTCG 61.124 66.667 0.00 0.00 0.00 4.35
210 211 2.749441 GGCTCTGCTGCCCTTGTC 60.749 66.667 0.00 0.00 46.82 3.18
221 222 4.803426 GGTGGCGACGAGGCTCTG 62.803 72.222 13.50 8.77 46.88 3.35
223 224 3.991536 GAAGGTGGCGACGAGGCTC 62.992 68.421 3.87 3.87 46.88 4.70
224 225 4.070552 GAAGGTGGCGACGAGGCT 62.071 66.667 0.00 0.00 46.88 4.58
225 226 3.665675 ATGAAGGTGGCGACGAGGC 62.666 63.158 0.00 0.00 46.95 4.70
226 227 1.079127 AATGAAGGTGGCGACGAGG 60.079 57.895 0.00 0.00 0.00 4.63
227 228 1.361668 CCAATGAAGGTGGCGACGAG 61.362 60.000 0.00 0.00 0.00 4.18
228 229 1.375396 CCAATGAAGGTGGCGACGA 60.375 57.895 0.00 0.00 0.00 4.20
229 230 1.361668 CTCCAATGAAGGTGGCGACG 61.362 60.000 0.00 0.00 35.99 5.12
230 231 1.026718 CCTCCAATGAAGGTGGCGAC 61.027 60.000 0.00 0.00 35.70 5.19
231 232 1.299648 CCTCCAATGAAGGTGGCGA 59.700 57.895 0.00 0.00 35.70 5.54
232 233 3.909662 CCTCCAATGAAGGTGGCG 58.090 61.111 0.00 0.00 35.70 5.69
234 235 0.967380 GTGGCCTCCAATGAAGGTGG 60.967 60.000 3.32 0.00 43.60 4.61
235 236 0.251297 TGTGGCCTCCAATGAAGGTG 60.251 55.000 3.32 0.00 34.18 4.00
236 237 0.251341 GTGTGGCCTCCAATGAAGGT 60.251 55.000 3.32 0.00 34.18 3.50
237 238 0.251297 TGTGTGGCCTCCAATGAAGG 60.251 55.000 3.32 0.00 34.18 3.46
238 239 1.171308 CTGTGTGGCCTCCAATGAAG 58.829 55.000 3.32 0.00 34.18 3.02
239 240 0.895100 GCTGTGTGGCCTCCAATGAA 60.895 55.000 3.32 0.00 34.18 2.57
240 241 1.303561 GCTGTGTGGCCTCCAATGA 60.304 57.895 3.32 0.00 34.18 2.57
241 242 1.303888 AGCTGTGTGGCCTCCAATG 60.304 57.895 3.32 0.00 34.18 2.82
242 243 1.303888 CAGCTGTGTGGCCTCCAAT 60.304 57.895 5.25 0.00 34.18 3.16
243 244 2.113774 CAGCTGTGTGGCCTCCAA 59.886 61.111 5.25 0.00 34.18 3.53
244 245 3.957586 CCAGCTGTGTGGCCTCCA 61.958 66.667 13.81 0.00 0.00 3.86
245 246 4.729918 CCCAGCTGTGTGGCCTCC 62.730 72.222 13.81 0.00 36.11 4.30
265 266 4.452733 CAACCCGAGGACTCCGCC 62.453 72.222 0.00 0.00 0.00 6.13
266 267 3.692406 ACAACCCGAGGACTCCGC 61.692 66.667 0.00 0.00 0.00 5.54
267 268 2.261671 CACAACCCGAGGACTCCG 59.738 66.667 0.00 0.00 0.00 4.63
268 269 2.663196 CCACAACCCGAGGACTCC 59.337 66.667 0.00 0.00 0.00 3.85
269 270 2.047179 GCCACAACCCGAGGACTC 60.047 66.667 0.00 0.00 0.00 3.36
270 271 2.847234 TGCCACAACCCGAGGACT 60.847 61.111 0.00 0.00 0.00 3.85
271 272 2.358737 CTGCCACAACCCGAGGAC 60.359 66.667 0.00 0.00 0.00 3.85
272 273 3.636231 CCTGCCACAACCCGAGGA 61.636 66.667 0.00 0.00 0.00 3.71
273 274 4.722700 CCCTGCCACAACCCGAGG 62.723 72.222 0.00 0.00 0.00 4.63
274 275 3.612247 CTCCCTGCCACAACCCGAG 62.612 68.421 0.00 0.00 0.00 4.63
275 276 3.636231 CTCCCTGCCACAACCCGA 61.636 66.667 0.00 0.00 0.00 5.14
276 277 4.722700 CCTCCCTGCCACAACCCG 62.723 72.222 0.00 0.00 0.00 5.28
277 278 4.366684 CCCTCCCTGCCACAACCC 62.367 72.222 0.00 0.00 0.00 4.11
278 279 4.366684 CCCCTCCCTGCCACAACC 62.367 72.222 0.00 0.00 0.00 3.77
279 280 4.366684 CCCCCTCCCTGCCACAAC 62.367 72.222 0.00 0.00 0.00 3.32
280 281 4.608514 TCCCCCTCCCTGCCACAA 62.609 66.667 0.00 0.00 0.00 3.33
281 282 4.608514 TTCCCCCTCCCTGCCACA 62.609 66.667 0.00 0.00 0.00 4.17
282 283 3.264845 TTTCCCCCTCCCTGCCAC 61.265 66.667 0.00 0.00 0.00 5.01
283 284 2.941025 CTTTCCCCCTCCCTGCCA 60.941 66.667 0.00 0.00 0.00 4.92
284 285 3.744155 CCTTTCCCCCTCCCTGCC 61.744 72.222 0.00 0.00 0.00 4.85
285 286 3.744155 CCCTTTCCCCCTCCCTGC 61.744 72.222 0.00 0.00 0.00 4.85
286 287 3.023735 CCCCTTTCCCCCTCCCTG 61.024 72.222 0.00 0.00 0.00 4.45
287 288 4.387765 CCCCCTTTCCCCCTCCCT 62.388 72.222 0.00 0.00 0.00 4.20
288 289 3.922305 TTCCCCCTTTCCCCCTCCC 62.922 68.421 0.00 0.00 0.00 4.30
289 290 2.204401 TTCCCCCTTTCCCCCTCC 60.204 66.667 0.00 0.00 0.00 4.30
290 291 2.317378 CCTTCCCCCTTTCCCCCTC 61.317 68.421 0.00 0.00 0.00 4.30
291 292 2.204464 CCTTCCCCCTTTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
292 293 2.204401 TCCTTCCCCCTTTCCCCC 60.204 66.667 0.00 0.00 0.00 5.40
293 294 2.317378 CCTCCTTCCCCCTTTCCCC 61.317 68.421 0.00 0.00 0.00 4.81
294 295 2.317378 CCCTCCTTCCCCCTTTCCC 61.317 68.421 0.00 0.00 0.00 3.97
295 296 1.147190 AACCCTCCTTCCCCCTTTCC 61.147 60.000 0.00 0.00 0.00 3.13
296 297 0.331954 GAACCCTCCTTCCCCCTTTC 59.668 60.000 0.00 0.00 0.00 2.62
297 298 1.498176 CGAACCCTCCTTCCCCCTTT 61.498 60.000 0.00 0.00 0.00 3.11
298 299 1.923909 CGAACCCTCCTTCCCCCTT 60.924 63.158 0.00 0.00 0.00 3.95
299 300 2.285442 CGAACCCTCCTTCCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
300 301 2.285144 TCGAACCCTCCTTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
301 302 1.612739 ACTCGAACCCTCCTTCCCC 60.613 63.158 0.00 0.00 0.00 4.81
302 303 1.898885 GACTCGAACCCTCCTTCCC 59.101 63.158 0.00 0.00 0.00 3.97
303 304 1.511768 CGACTCGAACCCTCCTTCC 59.488 63.158 0.00 0.00 0.00 3.46
304 305 1.153804 GCGACTCGAACCCTCCTTC 60.154 63.158 1.63 0.00 0.00 3.46
305 306 0.323178 TAGCGACTCGAACCCTCCTT 60.323 55.000 1.63 0.00 0.00 3.36
306 307 0.748729 CTAGCGACTCGAACCCTCCT 60.749 60.000 1.63 0.00 0.00 3.69
307 308 1.726533 CCTAGCGACTCGAACCCTCC 61.727 65.000 1.63 0.00 0.00 4.30
308 309 1.726533 CCCTAGCGACTCGAACCCTC 61.727 65.000 1.63 0.00 0.00 4.30
309 310 1.753463 CCCTAGCGACTCGAACCCT 60.753 63.158 1.63 0.00 0.00 4.34
310 311 0.749454 TACCCTAGCGACTCGAACCC 60.749 60.000 1.63 0.00 0.00 4.11
311 312 0.380024 GTACCCTAGCGACTCGAACC 59.620 60.000 1.63 0.00 0.00 3.62
312 313 0.027324 CGTACCCTAGCGACTCGAAC 59.973 60.000 1.63 0.00 0.00 3.95
313 314 1.091771 CCGTACCCTAGCGACTCGAA 61.092 60.000 1.63 0.00 0.00 3.71
314 315 1.522355 CCGTACCCTAGCGACTCGA 60.522 63.158 1.63 0.00 0.00 4.04
315 316 1.770085 GACCGTACCCTAGCGACTCG 61.770 65.000 0.00 0.00 0.00 4.18
316 317 2.020926 GACCGTACCCTAGCGACTC 58.979 63.158 0.00 0.00 0.00 3.36
317 318 4.232310 GACCGTACCCTAGCGACT 57.768 61.111 0.00 0.00 0.00 4.18
697 720 2.422832 TGTTCGGTGGGTTTGTTTGTAC 59.577 45.455 0.00 0.00 0.00 2.90
760 787 3.708403 TTCAGATCCAGAATGTGCACT 57.292 42.857 19.41 0.00 0.00 4.40
761 788 4.730657 CTTTTCAGATCCAGAATGTGCAC 58.269 43.478 10.75 10.75 0.00 4.57
965 1000 0.028637 GATCGGTCGTCGGTAAGGAC 59.971 60.000 0.00 0.00 41.14 3.85
969 1004 0.179156 GCTTGATCGGTCGTCGGTAA 60.179 55.000 0.00 0.00 39.77 2.85
970 1005 1.430632 GCTTGATCGGTCGTCGGTA 59.569 57.895 0.00 0.00 39.77 4.02
975 1010 2.521958 CTTGGGGCTTGATCGGTCGT 62.522 60.000 0.00 0.00 0.00 4.34
1122 1170 2.102420 TCAAGAAGAGAACAGGAACGCA 59.898 45.455 0.00 0.00 0.00 5.24
1123 1171 2.755650 TCAAGAAGAGAACAGGAACGC 58.244 47.619 0.00 0.00 0.00 4.84
1124 1172 3.929610 GGATCAAGAAGAGAACAGGAACG 59.070 47.826 0.00 0.00 0.00 3.95
1136 1184 1.664659 CAGCTTCTGCGGATCAAGAAG 59.335 52.381 19.91 19.91 45.42 2.85
1242 1290 2.254546 TCAGCCGATCGCCATTAAAT 57.745 45.000 10.32 0.00 38.78 1.40
1273 1322 1.447489 CGAGGTCAGCTCCTGCAAG 60.447 63.158 0.00 0.00 42.74 4.01
1363 1412 0.746659 GCCCTTGGATGCATGTTACC 59.253 55.000 2.46 0.00 0.00 2.85
1395 1444 2.158608 AGGGTCCAAGGTCAAAGTCAAG 60.159 50.000 0.00 0.00 0.00 3.02
1418 1467 0.813610 CTGCACGTCCTGGAACACAA 60.814 55.000 0.00 0.00 0.00 3.33
1419 1468 1.227527 CTGCACGTCCTGGAACACA 60.228 57.895 0.00 0.00 0.00 3.72
1485 1536 2.009165 AGTAGGGGAGGAGTGGTACTT 58.991 52.381 0.00 0.00 0.00 2.24
1500 1551 6.645415 ACCGAATATGCGATCTAAAAAGTAGG 59.355 38.462 4.11 0.00 0.00 3.18
1512 1566 3.376859 TCAAAGCAAACCGAATATGCGAT 59.623 39.130 4.11 0.00 44.60 4.58
1533 1587 7.307493 AGCCAAATTTCAAAAAGTTTGACTC 57.693 32.000 2.96 0.00 41.89 3.36
1537 1591 9.838975 AAACTTAGCCAAATTTCAAAAAGTTTG 57.161 25.926 19.80 0.00 41.68 2.93
1590 1645 8.418662 AGTGAATCCAATGATATTGATTTGGTG 58.581 33.333 3.24 0.00 39.67 4.17
1608 1663 6.560253 AGTACAACATTTCACAGTGAATCC 57.440 37.500 16.89 0.00 36.11 3.01
1624 1681 8.883731 ACATCTGCAATATCAACTAAGTACAAC 58.116 33.333 0.00 0.00 0.00 3.32
1696 1758 8.461249 TCCGCATATTAGGTATATCTTAGGTC 57.539 38.462 0.00 0.00 0.00 3.85
1697 1759 8.060075 ACTCCGCATATTAGGTATATCTTAGGT 58.940 37.037 0.00 0.00 0.00 3.08
1698 1760 8.466617 ACTCCGCATATTAGGTATATCTTAGG 57.533 38.462 0.00 0.00 0.00 2.69
1707 1769 9.101655 GTTTCTTTTTACTCCGCATATTAGGTA 57.898 33.333 0.00 0.00 0.00 3.08
1718 1780 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
1754 1816 1.450491 GGGAAAAGAGAGAGCCGCC 60.450 63.158 0.00 0.00 0.00 6.13
1788 1850 5.652744 GGTAACTTAACCGTCAGCATATG 57.347 43.478 0.00 0.00 0.00 1.78
1906 1969 1.204146 TCAAGGATACACAGAGCCCC 58.796 55.000 0.00 0.00 41.41 5.80
1907 1970 3.010420 GTTTCAAGGATACACAGAGCCC 58.990 50.000 0.00 0.00 41.41 5.19
1949 2012 6.294675 CCTTGATGTCCTTGAAGCAACAAATA 60.295 38.462 3.34 0.00 0.00 1.40
1982 2045 3.054508 CCTTCTCTTCCTGGAGAGCAAAT 60.055 47.826 14.57 0.00 42.37 2.32
1984 2047 1.905215 CCTTCTCTTCCTGGAGAGCAA 59.095 52.381 14.57 10.45 42.37 3.91
2059 2122 2.289631 TGTTGCTCGGTCTGTTCATCAT 60.290 45.455 0.00 0.00 0.00 2.45
2072 2135 1.369209 CACCGCAGTTTGTTGCTCG 60.369 57.895 0.00 0.00 41.90 5.03
2113 2176 4.811555 TCCACAAGTTCTGTTTGAATCG 57.188 40.909 0.00 0.00 35.47 3.34
2214 2289 1.528400 CGATGTGCAAGCGAGTTCATG 60.528 52.381 0.00 0.00 0.00 3.07
2328 2403 7.602753 AGGACTGTTACAAAATAAGCAATTCC 58.397 34.615 0.00 0.00 0.00 3.01
2628 2706 1.209504 CATAGAGAAGGGGCGGAAACA 59.790 52.381 0.00 0.00 0.00 2.83
2711 2789 7.041098 AGTCAGTATTGAAAGATTTGCGTTCTT 60.041 33.333 0.00 0.00 36.19 2.52
2746 2824 1.109323 GCTTGCAGGTCTGGTTTGGT 61.109 55.000 0.00 0.00 0.00 3.67
2816 2894 4.014569 TCTGTTTGCTTATAGTGGCACA 57.985 40.909 21.41 6.31 38.23 4.57
2840 2918 6.535274 TTGAATCATGCAATCGATGACTAG 57.465 37.500 0.00 0.00 32.68 2.57
2843 2921 3.973135 GCTTGAATCATGCAATCGATGAC 59.027 43.478 15.05 0.00 35.13 3.06
2861 2939 3.684788 AGCGTAAACTATCAGTTGGCTTG 59.315 43.478 6.67 0.00 38.66 4.01
2976 3054 4.554526 CGCTTTCTTGTAAACACAGCATGA 60.555 41.667 0.00 0.00 39.69 3.07
2986 3064 3.745799 TGATCCACCGCTTTCTTGTAAA 58.254 40.909 0.00 0.00 0.00 2.01
3022 3100 8.194104 CCAAATTATGAATTTATGTCACGGGAA 58.806 33.333 0.00 0.00 38.97 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.