Multiple sequence alignment - TraesCS2D01G115300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G115300 chr2D 100.000 2306 0 0 1 2306 63907621 63909926 0.000000e+00 4259.0
1 TraesCS2D01G115300 chr2D 86.715 1385 116 30 659 2006 64010644 64011997 0.000000e+00 1476.0
2 TraesCS2D01G115300 chr2D 88.069 461 40 12 857 1306 63913992 63913536 1.210000e-147 532.0
3 TraesCS2D01G115300 chr2D 90.663 407 25 5 906 1306 64015282 64014883 1.570000e-146 529.0
4 TraesCS2D01G115300 chr2D 88.750 240 25 2 2004 2243 12422577 12422814 2.240000e-75 292.0
5 TraesCS2D01G115300 chr2D 86.454 251 31 2 1057 1304 17025148 17024898 2.920000e-69 272.0
6 TraesCS2D01G115300 chr2D 90.196 51 2 1 1000 1047 17025229 17025179 1.910000e-06 63.9
7 TraesCS2D01G115300 chr2B 89.268 997 62 16 668 1651 100024415 100025379 0.000000e+00 1206.0
8 TraesCS2D01G115300 chr2B 88.578 464 42 3 852 1306 100030335 100029874 9.310000e-154 553.0
9 TraesCS2D01G115300 chr2B 95.399 326 14 1 1682 2006 100025690 100026015 3.400000e-143 518.0
10 TraesCS2D01G115300 chr2B 86.352 403 30 12 3 402 100021768 100022148 1.270000e-112 416.0
11 TraesCS2D01G115300 chr2B 83.587 329 30 10 1000 1304 28893651 28893323 1.040000e-73 287.0
12 TraesCS2D01G115300 chr2B 87.600 250 27 3 1995 2243 691192701 691192947 1.040000e-73 287.0
13 TraesCS2D01G115300 chr2B 88.841 233 24 2 2009 2240 484599748 484599979 3.750000e-73 285.0
14 TraesCS2D01G115300 chr2B 94.915 59 3 0 402 460 100024286 100024344 2.440000e-15 93.5
15 TraesCS2D01G115300 chr2B 92.063 63 5 0 2244 2306 100026017 100026079 3.160000e-14 89.8
16 TraesCS2D01G115300 chr2A 90.418 407 26 5 906 1306 65476086 65475687 7.300000e-145 523.0
17 TraesCS2D01G115300 chr2A 92.793 111 8 0 563 673 205919779 205919889 6.590000e-36 161.0
18 TraesCS2D01G115300 chr2A 92.105 114 9 0 563 676 749091924 749092037 6.590000e-36 161.0
19 TraesCS2D01G115300 chr4D 87.461 319 34 3 1000 1312 474918674 474918992 1.680000e-96 363.0
20 TraesCS2D01G115300 chr4D 100.000 28 0 0 1371 1398 133611470 133611443 4.000000e-03 52.8
21 TraesCS2D01G115300 chr5D 89.540 239 23 2 2005 2243 296662331 296662567 3.720000e-78 302.0
22 TraesCS2D01G115300 chr1A 88.936 235 25 1 2009 2243 84730458 84730691 2.900000e-74 289.0
23 TraesCS2D01G115300 chr5B 88.655 238 23 3 2009 2243 6875027 6874791 1.040000e-73 287.0
24 TraesCS2D01G115300 chr5B 88.936 235 23 2 2009 2243 528681585 528681354 1.040000e-73 287.0
25 TraesCS2D01G115300 chr5B 92.793 111 8 0 559 669 524744784 524744674 6.590000e-36 161.0
26 TraesCS2D01G115300 chr7A 88.333 240 23 5 2004 2242 668775378 668775613 1.350000e-72 283.0
27 TraesCS2D01G115300 chr7A 92.105 114 8 1 563 676 192671962 192671850 2.370000e-35 159.0
28 TraesCS2D01G115300 chr7B 87.251 251 26 6 1994 2244 541162898 541162654 4.850000e-72 281.0
29 TraesCS2D01G115300 chr3A 94.545 110 6 0 562 671 511068699 511068808 1.100000e-38 171.0
30 TraesCS2D01G115300 chr3A 93.519 108 7 0 563 670 114429444 114429551 6.590000e-36 161.0
31 TraesCS2D01G115300 chr6D 92.857 112 8 0 560 671 461414911 461414800 1.830000e-36 163.0
32 TraesCS2D01G115300 chr3B 92.857 112 8 0 560 671 824008816 824008927 1.830000e-36 163.0
33 TraesCS2D01G115300 chr1D 89.062 128 11 3 550 676 46112257 46112132 3.070000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G115300 chr2D 63907621 63909926 2305 False 4259.00 4259 100.0000 1 2306 1 chr2D.!!$F2 2305
1 TraesCS2D01G115300 chr2D 64010644 64011997 1353 False 1476.00 1476 86.7150 659 2006 1 chr2D.!!$F3 1347
2 TraesCS2D01G115300 chr2B 100021768 100026079 4311 False 464.66 1206 91.5994 3 2306 5 chr2B.!!$F3 2303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 222 0.234884 GCCACGTCAGTGCTGTTTAC 59.765 55.0 0.0 0.0 46.62 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 4695 0.036294 CGGGTCAGGGAGGTTTTCTC 60.036 60.0 0.0 0.0 41.71 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.505425 GAGTAAGAAAACACGGCGGT 58.495 50.000 13.24 3.10 0.00 5.68
56 57 2.676076 GAGTAAGAAAACACGGCGGTA 58.324 47.619 13.24 0.00 0.00 4.02
57 58 2.407090 AGTAAGAAAACACGGCGGTAC 58.593 47.619 13.24 0.55 0.00 3.34
75 76 3.431346 GGTACTACCGGGCTTAGGAAAAG 60.431 52.174 6.32 0.00 0.00 2.27
79 80 3.345508 ACCGGGCTTAGGAAAAGTTAG 57.654 47.619 6.32 0.00 0.00 2.34
80 81 2.026542 ACCGGGCTTAGGAAAAGTTAGG 60.027 50.000 6.32 0.00 0.00 2.69
81 82 2.026542 CCGGGCTTAGGAAAAGTTAGGT 60.027 50.000 0.00 0.00 0.00 3.08
124 127 6.824305 TTCTTTTGAGGATCTTTGGCTTAG 57.176 37.500 0.00 0.00 34.92 2.18
129 132 4.302067 TGAGGATCTTTGGCTTAGGATCT 58.698 43.478 10.41 0.00 36.02 2.75
133 136 6.125719 AGGATCTTTGGCTTAGGATCTTTTC 58.874 40.000 10.41 0.00 36.02 2.29
154 157 2.489938 TGGAGTTCATGTTGGGCTAC 57.510 50.000 0.00 0.00 0.00 3.58
157 160 2.552155 GGAGTTCATGTTGGGCTACACA 60.552 50.000 0.00 0.00 0.00 3.72
197 200 2.624636 CGGAAAACGGGCATTAGTAGT 58.375 47.619 0.00 0.00 39.42 2.73
198 201 2.350498 CGGAAAACGGGCATTAGTAGTG 59.650 50.000 0.00 0.00 39.42 2.74
210 213 1.612676 TAGTAGTGTGCCACGTCAGT 58.387 50.000 0.00 0.00 39.64 3.41
212 215 1.300620 TAGTGTGCCACGTCAGTGC 60.301 57.895 0.00 0.00 46.62 4.40
219 222 0.234884 GCCACGTCAGTGCTGTTTAC 59.765 55.000 0.00 0.00 46.62 2.01
220 223 1.865865 CCACGTCAGTGCTGTTTACT 58.134 50.000 0.00 0.00 46.62 2.24
222 225 2.032894 CCACGTCAGTGCTGTTTACTTG 60.033 50.000 0.00 0.00 46.62 3.16
223 226 2.607635 CACGTCAGTGCTGTTTACTTGT 59.392 45.455 0.00 0.00 41.94 3.16
225 228 3.063452 ACGTCAGTGCTGTTTACTTGTTG 59.937 43.478 0.00 0.00 0.00 3.33
230 233 5.065474 TCAGTGCTGTTTACTTGTTGTTACC 59.935 40.000 0.00 0.00 0.00 2.85
240 243 4.850680 ACTTGTTGTTACCTTCCTTGACA 58.149 39.130 0.00 0.00 0.00 3.58
242 245 5.299279 ACTTGTTGTTACCTTCCTTGACATG 59.701 40.000 0.00 0.00 0.00 3.21
261 264 5.111293 ACATGTTGCTTTTGGAGAACTTTG 58.889 37.500 0.00 0.00 0.00 2.77
282 285 2.806929 GCAGTGCTTGTGTTGGCA 59.193 55.556 8.18 0.00 36.01 4.92
288 291 2.233431 AGTGCTTGTGTTGGCAAGAAAA 59.767 40.909 0.00 0.00 46.34 2.29
290 293 2.233431 TGCTTGTGTTGGCAAGAAAAGT 59.767 40.909 23.56 0.00 46.34 2.66
303 306 4.454504 GCAAGAAAAGTTTAGTCCCGATGA 59.545 41.667 0.00 0.00 0.00 2.92
304 307 5.123979 GCAAGAAAAGTTTAGTCCCGATGAT 59.876 40.000 0.00 0.00 0.00 2.45
305 308 6.349363 GCAAGAAAAGTTTAGTCCCGATGATT 60.349 38.462 0.00 0.00 0.00 2.57
306 309 7.148306 GCAAGAAAAGTTTAGTCCCGATGATTA 60.148 37.037 0.00 0.00 0.00 1.75
307 310 8.893727 CAAGAAAAGTTTAGTCCCGATGATTAT 58.106 33.333 0.00 0.00 0.00 1.28
308 311 8.664211 AGAAAAGTTTAGTCCCGATGATTATC 57.336 34.615 0.00 0.00 0.00 1.75
335 338 3.811722 TGTCGTCAATTGCAACTGATC 57.188 42.857 14.40 8.49 0.00 2.92
343 346 0.953471 TTGCAACTGATCGGTTCGGG 60.953 55.000 17.22 7.82 34.77 5.14
348 351 1.804601 ACTGATCGGTTCGGGTTTTC 58.195 50.000 0.00 0.00 34.77 2.29
352 355 3.215975 TGATCGGTTCGGGTTTTCTTTT 58.784 40.909 0.00 0.00 0.00 2.27
353 356 3.633065 TGATCGGTTCGGGTTTTCTTTTT 59.367 39.130 0.00 0.00 0.00 1.94
462 2603 8.863872 ACCTGATACAGTATTAATTATTGCCC 57.136 34.615 0.00 0.00 0.00 5.36
463 2604 7.888546 ACCTGATACAGTATTAATTATTGCCCC 59.111 37.037 0.00 0.00 0.00 5.80
464 2605 8.109634 CCTGATACAGTATTAATTATTGCCCCT 58.890 37.037 0.00 0.00 0.00 4.79
465 2606 9.520515 CTGATACAGTATTAATTATTGCCCCTT 57.479 33.333 0.00 0.00 0.00 3.95
466 2607 9.875708 TGATACAGTATTAATTATTGCCCCTTT 57.124 29.630 0.00 0.00 0.00 3.11
469 2610 7.712797 ACAGTATTAATTATTGCCCCTTTTCG 58.287 34.615 0.00 0.00 0.00 3.46
470 2611 7.145323 CAGTATTAATTATTGCCCCTTTTCGG 58.855 38.462 0.00 0.00 0.00 4.30
471 2612 7.013846 CAGTATTAATTATTGCCCCTTTTCGGA 59.986 37.037 0.00 0.00 33.16 4.55
472 2613 6.800072 ATTAATTATTGCCCCTTTTCGGAA 57.200 33.333 0.00 0.00 33.16 4.30
473 2614 6.607004 TTAATTATTGCCCCTTTTCGGAAA 57.393 33.333 0.00 0.00 33.16 3.13
474 2615 5.491323 AATTATTGCCCCTTTTCGGAAAA 57.509 34.783 14.64 14.64 33.16 2.29
475 2616 4.957684 TTATTGCCCCTTTTCGGAAAAA 57.042 36.364 15.99 1.94 33.42 1.94
497 2638 8.541133 AAAAGAGTTCTTGATGTTAGTAGCTC 57.459 34.615 0.00 0.00 36.12 4.09
526 2667 3.316573 GAGTAGCCGCCCACTTGCT 62.317 63.158 0.00 0.00 39.10 3.91
528 2669 3.318384 TAGCCGCCCACTTGCTCA 61.318 61.111 0.00 0.00 36.57 4.26
532 2673 2.670934 CGCCCACTTGCTCAAGCT 60.671 61.111 9.36 0.00 41.99 3.74
548 2689 0.465824 AGCTGATTGATGCCTGCCTC 60.466 55.000 0.00 0.00 0.00 4.70
549 2690 0.750546 GCTGATTGATGCCTGCCTCA 60.751 55.000 0.00 0.00 0.00 3.86
558 2699 4.088634 TGATGCCTGCCTCAAAAGTAAAT 58.911 39.130 0.00 0.00 0.00 1.40
559 2700 5.260424 TGATGCCTGCCTCAAAAGTAAATA 58.740 37.500 0.00 0.00 0.00 1.40
560 2701 5.125417 TGATGCCTGCCTCAAAAGTAAATAC 59.875 40.000 0.00 0.00 0.00 1.89
561 2702 4.402829 TGCCTGCCTCAAAAGTAAATACA 58.597 39.130 0.00 0.00 0.00 2.29
562 2703 5.016173 TGCCTGCCTCAAAAGTAAATACAT 58.984 37.500 0.00 0.00 0.00 2.29
563 2704 6.184068 TGCCTGCCTCAAAAGTAAATACATA 58.816 36.000 0.00 0.00 0.00 2.29
564 2705 6.094881 TGCCTGCCTCAAAAGTAAATACATAC 59.905 38.462 0.00 0.00 0.00 2.39
565 2706 6.318900 GCCTGCCTCAAAAGTAAATACATACT 59.681 38.462 0.00 0.00 37.73 2.12
566 2707 7.467403 GCCTGCCTCAAAAGTAAATACATACTC 60.467 40.741 0.00 0.00 35.09 2.59
567 2708 7.012421 CCTGCCTCAAAAGTAAATACATACTCC 59.988 40.741 0.00 0.00 35.09 3.85
568 2709 6.826741 TGCCTCAAAAGTAAATACATACTCCC 59.173 38.462 0.00 0.00 35.09 4.30
569 2710 7.054751 GCCTCAAAAGTAAATACATACTCCCT 58.945 38.462 0.00 0.00 35.09 4.20
570 2711 7.556635 GCCTCAAAAGTAAATACATACTCCCTT 59.443 37.037 0.00 0.00 35.09 3.95
571 2712 9.110502 CCTCAAAAGTAAATACATACTCCCTTC 57.889 37.037 0.00 0.00 35.09 3.46
572 2713 8.712285 TCAAAAGTAAATACATACTCCCTTCG 57.288 34.615 0.00 0.00 35.09 3.79
573 2714 8.316214 TCAAAAGTAAATACATACTCCCTTCGT 58.684 33.333 0.00 0.00 35.09 3.85
574 2715 8.943002 CAAAAGTAAATACATACTCCCTTCGTT 58.057 33.333 0.00 0.00 35.09 3.85
575 2716 8.713737 AAAGTAAATACATACTCCCTTCGTTC 57.286 34.615 0.00 0.00 35.09 3.95
576 2717 6.501781 AGTAAATACATACTCCCTTCGTTCG 58.498 40.000 0.00 0.00 30.26 3.95
577 2718 5.587388 AAATACATACTCCCTTCGTTCGA 57.413 39.130 0.00 0.00 0.00 3.71
578 2719 5.587388 AATACATACTCCCTTCGTTCGAA 57.413 39.130 7.40 7.40 0.00 3.71
579 2720 3.947910 ACATACTCCCTTCGTTCGAAA 57.052 42.857 0.00 0.00 0.00 3.46
580 2721 4.467198 ACATACTCCCTTCGTTCGAAAT 57.533 40.909 0.00 0.00 0.00 2.17
581 2722 4.828829 ACATACTCCCTTCGTTCGAAATT 58.171 39.130 0.00 0.00 0.00 1.82
582 2723 5.969423 ACATACTCCCTTCGTTCGAAATTA 58.031 37.500 0.00 0.00 0.00 1.40
583 2724 5.809051 ACATACTCCCTTCGTTCGAAATTAC 59.191 40.000 0.00 0.00 0.00 1.89
584 2725 4.532314 ACTCCCTTCGTTCGAAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
585 2726 4.891260 ACTCCCTTCGTTCGAAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
586 2727 6.029346 ACTCCCTTCGTTCGAAATTACTTA 57.971 37.500 0.00 0.00 0.00 2.24
587 2728 6.637657 ACTCCCTTCGTTCGAAATTACTTAT 58.362 36.000 0.00 0.00 0.00 1.73
588 2729 7.101700 ACTCCCTTCGTTCGAAATTACTTATT 58.898 34.615 0.00 0.00 0.00 1.40
589 2730 7.605309 ACTCCCTTCGTTCGAAATTACTTATTT 59.395 33.333 0.00 0.00 39.15 1.40
590 2731 8.326680 TCCCTTCGTTCGAAATTACTTATTTT 57.673 30.769 0.00 0.00 36.59 1.82
591 2732 8.231837 TCCCTTCGTTCGAAATTACTTATTTTG 58.768 33.333 0.00 0.00 36.59 2.44
592 2733 8.231837 CCCTTCGTTCGAAATTACTTATTTTGA 58.768 33.333 0.00 0.00 42.37 2.69
593 2734 9.601971 CCTTCGTTCGAAATTACTTATTTTGAA 57.398 29.630 0.00 8.22 46.89 2.69
639 2780 9.832445 AAAATACGTCTAGATACATCCATTTGT 57.168 29.630 0.00 0.00 0.00 2.83
640 2781 8.818141 AATACGTCTAGATACATCCATTTGTG 57.182 34.615 0.00 0.00 0.00 3.33
641 2782 5.050490 ACGTCTAGATACATCCATTTGTGC 58.950 41.667 0.00 0.00 0.00 4.57
642 2783 4.148871 CGTCTAGATACATCCATTTGTGCG 59.851 45.833 0.00 0.00 0.00 5.34
643 2784 5.289595 GTCTAGATACATCCATTTGTGCGA 58.710 41.667 0.00 0.00 0.00 5.10
644 2785 5.175856 GTCTAGATACATCCATTTGTGCGAC 59.824 44.000 0.00 0.00 0.00 5.19
645 2786 3.872696 AGATACATCCATTTGTGCGACA 58.127 40.909 0.00 0.00 0.00 4.35
646 2787 4.260985 AGATACATCCATTTGTGCGACAA 58.739 39.130 0.00 0.00 36.11 3.18
647 2788 2.995466 ACATCCATTTGTGCGACAAG 57.005 45.000 0.00 0.00 39.53 3.16
648 2789 2.229792 ACATCCATTTGTGCGACAAGT 58.770 42.857 0.00 0.00 39.53 3.16
649 2790 3.407698 ACATCCATTTGTGCGACAAGTA 58.592 40.909 0.00 0.00 39.53 2.24
650 2791 3.818210 ACATCCATTTGTGCGACAAGTAA 59.182 39.130 0.00 0.00 39.53 2.24
651 2792 4.458989 ACATCCATTTGTGCGACAAGTAAT 59.541 37.500 0.00 0.00 39.53 1.89
652 2793 5.048083 ACATCCATTTGTGCGACAAGTAATT 60.048 36.000 0.00 0.00 39.53 1.40
653 2794 5.041951 TCCATTTGTGCGACAAGTAATTC 57.958 39.130 0.00 0.00 39.53 2.17
654 2795 4.083003 TCCATTTGTGCGACAAGTAATTCC 60.083 41.667 0.00 0.00 39.53 3.01
655 2796 3.529634 TTTGTGCGACAAGTAATTCCG 57.470 42.857 0.00 0.00 39.53 4.30
656 2797 2.442212 TGTGCGACAAGTAATTCCGA 57.558 45.000 0.00 0.00 0.00 4.55
657 2798 2.756829 TGTGCGACAAGTAATTCCGAA 58.243 42.857 0.00 0.00 0.00 4.30
660 2801 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
697 2838 2.095567 CCGAGCCTGAAGAACAAATGTG 60.096 50.000 0.00 0.00 0.00 3.21
699 2840 2.294233 GAGCCTGAAGAACAAATGTGCA 59.706 45.455 0.00 0.00 0.00 4.57
700 2841 2.694628 AGCCTGAAGAACAAATGTGCAA 59.305 40.909 0.00 0.00 0.00 4.08
701 2842 2.796593 GCCTGAAGAACAAATGTGCAAC 59.203 45.455 0.00 0.00 37.35 4.17
703 2844 3.243035 CCTGAAGAACAAATGTGCAACGA 60.243 43.478 0.00 0.00 42.39 3.85
712 2855 4.629634 ACAAATGTGCAACGATCGAATAGA 59.370 37.500 24.34 3.99 42.39 1.98
722 2865 7.096065 TGCAACGATCGAATAGATGAAACATAG 60.096 37.037 24.34 0.00 40.26 2.23
818 2961 5.859648 GTCTTCTTACTGCACTCTAGAACAC 59.140 44.000 0.00 0.00 0.00 3.32
871 3016 3.343617 GGCTTCCATGCGCCTATATAAA 58.656 45.455 4.18 0.00 42.98 1.40
875 3020 3.670625 TCCATGCGCCTATATAAACACC 58.329 45.455 4.18 0.00 0.00 4.16
882 3027 3.070446 CGCCTATATAAACACCTCACCCA 59.930 47.826 0.00 0.00 0.00 4.51
886 3031 2.178912 ATAAACACCTCACCCACACG 57.821 50.000 0.00 0.00 0.00 4.49
989 3142 5.826208 GCTAGCTTCTAAGGAGACTAAGAGT 59.174 44.000 7.70 0.00 42.68 3.24
1011 3164 2.869503 GAAGAAAGATGGCGGCGGGA 62.870 60.000 9.78 0.00 0.00 5.14
1029 3182 1.782028 GAGGCGTGTGGGTGTTCAAC 61.782 60.000 0.00 0.00 0.00 3.18
1084 3237 2.345991 GGAAGGCGCTGGTGTACA 59.654 61.111 7.64 0.00 0.00 2.90
1260 3413 1.202687 CGCTCCACCCACATGTATGAT 60.203 52.381 0.00 0.00 0.00 2.45
1318 3471 2.294791 GACCTCTAGACGTGCATATGCT 59.705 50.000 27.13 8.49 42.66 3.79
1330 3483 1.876156 GCATATGCTCGCCTAAGCTTT 59.124 47.619 20.64 0.00 42.94 3.51
1338 3491 1.903860 TCGCCTAAGCTTTCCCAACTA 59.096 47.619 3.20 0.00 36.60 2.24
1397 3550 9.838339 ATCTCCGTCTCAAAATATAAGATGTTT 57.162 29.630 0.00 0.00 0.00 2.83
1447 3606 3.119495 AGGTAGTACGAATAAACGCGGTT 60.119 43.478 16.36 16.36 36.70 4.44
1472 3631 5.067544 TGTGATGATGTGTTTGTGTGATGTT 59.932 36.000 0.00 0.00 0.00 2.71
1620 3788 5.636837 TGAAAGAATATTAAAGCCGTGTGC 58.363 37.500 0.00 0.00 41.71 4.57
1664 3832 1.134175 TCGATCGTCTTATGTGCAGCA 59.866 47.619 15.94 0.00 0.00 4.41
1666 3834 2.796032 CGATCGTCTTATGTGCAGCAGA 60.796 50.000 7.03 0.00 0.00 4.26
1770 4219 2.871633 CGTGCATGCACTTGGTATATCA 59.128 45.455 39.46 5.33 44.16 2.15
1792 4241 1.371635 CTTTTCGTTGGCCAAGGCG 60.372 57.895 29.23 24.32 43.06 5.52
1819 4301 4.770795 CCTATAAAGGTCTTGGGTGTCAG 58.229 47.826 0.00 0.00 38.19 3.51
1820 4302 2.561478 TAAAGGTCTTGGGTGTCAGC 57.439 50.000 0.00 0.00 0.00 4.26
1843 4325 5.182760 GCCCTTATCTGCCAAATATTCTCTG 59.817 44.000 0.00 0.00 0.00 3.35
1982 4464 0.454196 GGTGTGTTTGTGCGGTTCTT 59.546 50.000 0.00 0.00 0.00 2.52
1985 4467 2.096174 GTGTGTTTGTGCGGTTCTTACA 59.904 45.455 0.00 0.00 0.00 2.41
1987 4469 3.190744 TGTGTTTGTGCGGTTCTTACAAA 59.809 39.130 0.00 0.00 40.73 2.83
2059 4541 7.254852 TTGATTTATCAAGGTTATTCAACCGC 58.745 34.615 1.12 0.00 44.68 5.68
2060 4542 7.094162 TTGATTTATCAAGGTTATTCAACCGCA 60.094 33.333 1.12 0.00 44.68 5.69
2069 4551 6.431198 GGTTATTCAACCGCATCTAAAGAA 57.569 37.500 0.00 0.00 44.74 2.52
2070 4552 7.027778 GGTTATTCAACCGCATCTAAAGAAT 57.972 36.000 0.00 0.00 44.74 2.40
2071 4553 6.912591 GGTTATTCAACCGCATCTAAAGAATG 59.087 38.462 0.00 0.00 44.74 2.67
2072 4554 4.355543 TTCAACCGCATCTAAAGAATGC 57.644 40.909 0.00 0.00 37.91 3.56
2073 4555 2.682856 TCAACCGCATCTAAAGAATGCC 59.317 45.455 2.76 0.00 38.01 4.40
2074 4556 1.680338 ACCGCATCTAAAGAATGCCC 58.320 50.000 2.76 0.00 38.01 5.36
2075 4557 1.064758 ACCGCATCTAAAGAATGCCCA 60.065 47.619 2.76 0.00 38.01 5.36
2076 4558 1.605710 CCGCATCTAAAGAATGCCCAG 59.394 52.381 2.76 0.00 38.01 4.45
2077 4559 1.002033 CGCATCTAAAGAATGCCCAGC 60.002 52.381 2.76 0.00 38.01 4.85
2078 4560 1.339291 GCATCTAAAGAATGCCCAGCC 59.661 52.381 0.00 0.00 35.44 4.85
2079 4561 2.941480 CATCTAAAGAATGCCCAGCCT 58.059 47.619 0.00 0.00 0.00 4.58
2080 4562 2.717639 TCTAAAGAATGCCCAGCCTC 57.282 50.000 0.00 0.00 0.00 4.70
2081 4563 2.200081 TCTAAAGAATGCCCAGCCTCT 58.800 47.619 0.00 0.00 0.00 3.69
2082 4564 3.384168 TCTAAAGAATGCCCAGCCTCTA 58.616 45.455 0.00 0.00 0.00 2.43
2083 4565 2.426842 AAAGAATGCCCAGCCTCTAC 57.573 50.000 0.00 0.00 0.00 2.59
2084 4566 1.289160 AAGAATGCCCAGCCTCTACA 58.711 50.000 0.00 0.00 0.00 2.74
2085 4567 1.516110 AGAATGCCCAGCCTCTACAT 58.484 50.000 0.00 0.00 0.00 2.29
2086 4568 2.694397 AGAATGCCCAGCCTCTACATA 58.306 47.619 0.00 0.00 0.00 2.29
2087 4569 3.048600 AGAATGCCCAGCCTCTACATAA 58.951 45.455 0.00 0.00 0.00 1.90
2088 4570 2.938956 ATGCCCAGCCTCTACATAAC 57.061 50.000 0.00 0.00 0.00 1.89
2089 4571 1.578897 TGCCCAGCCTCTACATAACA 58.421 50.000 0.00 0.00 0.00 2.41
2090 4572 2.126882 TGCCCAGCCTCTACATAACAT 58.873 47.619 0.00 0.00 0.00 2.71
2091 4573 3.313791 TGCCCAGCCTCTACATAACATA 58.686 45.455 0.00 0.00 0.00 2.29
2092 4574 3.714280 TGCCCAGCCTCTACATAACATAA 59.286 43.478 0.00 0.00 0.00 1.90
2093 4575 4.350816 TGCCCAGCCTCTACATAACATAAT 59.649 41.667 0.00 0.00 0.00 1.28
2094 4576 4.697352 GCCCAGCCTCTACATAACATAATG 59.303 45.833 0.00 0.00 0.00 1.90
2095 4577 4.697352 CCCAGCCTCTACATAACATAATGC 59.303 45.833 0.00 0.00 0.00 3.56
2096 4578 5.308014 CCAGCCTCTACATAACATAATGCA 58.692 41.667 0.00 0.00 0.00 3.96
2097 4579 5.180117 CCAGCCTCTACATAACATAATGCAC 59.820 44.000 0.00 0.00 0.00 4.57
2098 4580 5.759763 CAGCCTCTACATAACATAATGCACA 59.240 40.000 0.00 0.00 0.00 4.57
2099 4581 5.760253 AGCCTCTACATAACATAATGCACAC 59.240 40.000 0.00 0.00 0.00 3.82
2100 4582 5.333339 GCCTCTACATAACATAATGCACACG 60.333 44.000 0.00 0.00 0.00 4.49
2101 4583 5.177511 CCTCTACATAACATAATGCACACGG 59.822 44.000 0.00 0.00 0.00 4.94
2102 4584 5.908341 TCTACATAACATAATGCACACGGA 58.092 37.500 0.00 0.00 0.00 4.69
2103 4585 4.875544 ACATAACATAATGCACACGGAC 57.124 40.909 0.00 0.00 0.00 4.79
2104 4586 4.257731 ACATAACATAATGCACACGGACA 58.742 39.130 0.00 0.00 0.00 4.02
2105 4587 4.697828 ACATAACATAATGCACACGGACAA 59.302 37.500 0.00 0.00 0.00 3.18
2106 4588 3.552604 AACATAATGCACACGGACAAC 57.447 42.857 0.00 0.00 0.00 3.32
2107 4589 2.499197 ACATAATGCACACGGACAACA 58.501 42.857 0.00 0.00 0.00 3.33
2108 4590 2.881513 ACATAATGCACACGGACAACAA 59.118 40.909 0.00 0.00 0.00 2.83
2109 4591 3.058293 ACATAATGCACACGGACAACAAG 60.058 43.478 0.00 0.00 0.00 3.16
2110 4592 1.388547 AATGCACACGGACAACAAGT 58.611 45.000 0.00 0.00 0.00 3.16
2111 4593 0.662619 ATGCACACGGACAACAAGTG 59.337 50.000 0.00 0.00 41.28 3.16
2112 4594 4.996113 CACACGGACAACAAGTGC 57.004 55.556 0.00 0.00 39.31 4.40
2113 4595 2.094060 CACACGGACAACAAGTGCA 58.906 52.632 0.00 0.00 38.70 4.57
2114 4596 0.449786 CACACGGACAACAAGTGCAA 59.550 50.000 0.00 0.00 38.70 4.08
2115 4597 1.135546 CACACGGACAACAAGTGCAAA 60.136 47.619 0.00 0.00 38.70 3.68
2116 4598 1.135517 ACACGGACAACAAGTGCAAAC 60.136 47.619 0.00 0.00 38.70 2.93
2117 4599 0.098025 ACGGACAACAAGTGCAAACG 59.902 50.000 0.00 0.00 38.70 3.60
2118 4600 0.375454 CGGACAACAAGTGCAAACGA 59.625 50.000 0.00 0.00 38.70 3.85
2119 4601 1.822581 GGACAACAAGTGCAAACGAC 58.177 50.000 0.00 0.00 38.62 4.34
2120 4602 1.400494 GGACAACAAGTGCAAACGACT 59.600 47.619 0.00 0.00 38.62 4.18
2121 4603 2.440501 GACAACAAGTGCAAACGACTG 58.559 47.619 0.00 0.00 0.00 3.51
2122 4604 2.080693 ACAACAAGTGCAAACGACTGA 58.919 42.857 0.00 0.00 0.00 3.41
2123 4605 2.486203 ACAACAAGTGCAAACGACTGAA 59.514 40.909 0.00 0.00 0.00 3.02
2124 4606 3.057876 ACAACAAGTGCAAACGACTGAAA 60.058 39.130 0.00 0.00 0.00 2.69
2125 4607 3.840890 ACAAGTGCAAACGACTGAAAA 57.159 38.095 0.00 0.00 0.00 2.29
2126 4608 4.167554 ACAAGTGCAAACGACTGAAAAA 57.832 36.364 0.00 0.00 0.00 1.94
2127 4609 4.743493 ACAAGTGCAAACGACTGAAAAAT 58.257 34.783 0.00 0.00 0.00 1.82
2128 4610 5.885881 ACAAGTGCAAACGACTGAAAAATA 58.114 33.333 0.00 0.00 0.00 1.40
2129 4611 6.326375 ACAAGTGCAAACGACTGAAAAATAA 58.674 32.000 0.00 0.00 0.00 1.40
2130 4612 6.809196 ACAAGTGCAAACGACTGAAAAATAAA 59.191 30.769 0.00 0.00 0.00 1.40
2131 4613 6.806120 AGTGCAAACGACTGAAAAATAAAC 57.194 33.333 0.00 0.00 0.00 2.01
2132 4614 6.326375 AGTGCAAACGACTGAAAAATAAACA 58.674 32.000 0.00 0.00 0.00 2.83
2133 4615 6.978080 AGTGCAAACGACTGAAAAATAAACAT 59.022 30.769 0.00 0.00 0.00 2.71
2134 4616 7.491048 AGTGCAAACGACTGAAAAATAAACATT 59.509 29.630 0.00 0.00 0.00 2.71
2135 4617 7.578736 GTGCAAACGACTGAAAAATAAACATTG 59.421 33.333 0.00 0.00 0.00 2.82
2136 4618 7.276658 TGCAAACGACTGAAAAATAAACATTGT 59.723 29.630 0.00 0.00 0.00 2.71
2137 4619 8.113675 GCAAACGACTGAAAAATAAACATTGTT 58.886 29.630 0.00 0.00 0.00 2.83
2138 4620 9.965748 CAAACGACTGAAAAATAAACATTGTTT 57.034 25.926 18.13 18.13 0.00 2.83
2140 4622 9.965748 AACGACTGAAAAATAAACATTGTTTTG 57.034 25.926 19.15 0.00 34.76 2.44
2141 4623 8.113675 ACGACTGAAAAATAAACATTGTTTTGC 58.886 29.630 19.15 1.82 34.76 3.68
2142 4624 8.113062 CGACTGAAAAATAAACATTGTTTTGCA 58.887 29.630 19.15 6.20 37.07 4.08
2144 4626 8.260433 CTGAAAAATAAACATTGTTTTGCAGC 57.740 30.769 19.15 6.86 44.78 5.25
2145 4627 7.755591 TGAAAAATAAACATTGTTTTGCAGCA 58.244 26.923 19.15 9.00 35.26 4.41
2146 4628 8.239314 TGAAAAATAAACATTGTTTTGCAGCAA 58.761 25.926 19.15 2.83 35.26 3.91
2147 4629 8.976986 AAAAATAAACATTGTTTTGCAGCAAA 57.023 23.077 16.93 16.93 34.76 3.68
2148 4630 8.976986 AAAATAAACATTGTTTTGCAGCAAAA 57.023 23.077 26.28 26.28 40.41 2.44
2149 4631 8.976986 AAATAAACATTGTTTTGCAGCAAAAA 57.023 23.077 30.44 18.90 43.50 1.94
2150 4632 9.583765 AAATAAACATTGTTTTGCAGCAAAAAT 57.416 22.222 30.44 20.16 43.50 1.82
2153 4635 8.976986 AAACATTGTTTTGCAGCAAAAATAAA 57.023 23.077 30.44 24.02 43.50 1.40
2154 4636 9.583765 AAACATTGTTTTGCAGCAAAAATAAAT 57.416 22.222 30.44 24.89 43.50 1.40
2155 4637 8.785468 ACATTGTTTTGCAGCAAAAATAAATC 57.215 26.923 30.44 18.89 43.50 2.17
2156 4638 8.404000 ACATTGTTTTGCAGCAAAAATAAATCA 58.596 25.926 30.44 20.93 43.50 2.57
2157 4639 9.234384 CATTGTTTTGCAGCAAAAATAAATCAA 57.766 25.926 30.44 26.44 43.50 2.57
2158 4640 9.968870 ATTGTTTTGCAGCAAAAATAAATCAAT 57.031 22.222 30.44 27.20 43.50 2.57
2159 4641 9.448294 TTGTTTTGCAGCAAAAATAAATCAATC 57.552 25.926 30.44 16.41 43.50 2.67
2160 4642 8.838365 TGTTTTGCAGCAAAAATAAATCAATCT 58.162 25.926 30.44 0.00 43.50 2.40
2163 4645 7.760131 TGCAGCAAAAATAAATCAATCTAGC 57.240 32.000 0.00 0.00 0.00 3.42
2164 4646 6.757947 TGCAGCAAAAATAAATCAATCTAGCC 59.242 34.615 0.00 0.00 0.00 3.93
2165 4647 6.201615 GCAGCAAAAATAAATCAATCTAGCCC 59.798 38.462 0.00 0.00 0.00 5.19
2166 4648 7.267128 CAGCAAAAATAAATCAATCTAGCCCA 58.733 34.615 0.00 0.00 0.00 5.36
2167 4649 7.437267 CAGCAAAAATAAATCAATCTAGCCCAG 59.563 37.037 0.00 0.00 0.00 4.45
2168 4650 6.703165 GCAAAAATAAATCAATCTAGCCCAGG 59.297 38.462 0.00 0.00 0.00 4.45
2169 4651 7.417797 GCAAAAATAAATCAATCTAGCCCAGGA 60.418 37.037 0.00 0.00 0.00 3.86
2170 4652 8.645110 CAAAAATAAATCAATCTAGCCCAGGAT 58.355 33.333 0.00 0.00 0.00 3.24
2171 4653 7.771927 AAATAAATCAATCTAGCCCAGGATG 57.228 36.000 0.00 0.00 0.00 3.51
2187 4669 2.711542 GGATGGGGCAAATCCTATACG 58.288 52.381 9.74 0.00 40.50 3.06
2188 4670 2.304761 GGATGGGGCAAATCCTATACGA 59.695 50.000 9.74 0.00 40.50 3.43
2189 4671 3.244770 GGATGGGGCAAATCCTATACGAA 60.245 47.826 9.74 0.00 40.50 3.85
2190 4672 3.485463 TGGGGCAAATCCTATACGAAG 57.515 47.619 0.00 0.00 34.39 3.79
2191 4673 3.042682 TGGGGCAAATCCTATACGAAGA 58.957 45.455 0.00 0.00 34.39 2.87
2192 4674 3.650942 TGGGGCAAATCCTATACGAAGAT 59.349 43.478 0.00 0.00 34.39 2.40
2193 4675 4.104102 TGGGGCAAATCCTATACGAAGATT 59.896 41.667 0.00 0.00 34.39 2.40
2194 4676 5.308497 TGGGGCAAATCCTATACGAAGATTA 59.692 40.000 0.00 0.00 34.39 1.75
2195 4677 5.642491 GGGGCAAATCCTATACGAAGATTAC 59.358 44.000 0.00 0.00 34.39 1.89
2196 4678 6.228258 GGGCAAATCCTATACGAAGATTACA 58.772 40.000 0.00 0.00 34.39 2.41
2197 4679 6.147328 GGGCAAATCCTATACGAAGATTACAC 59.853 42.308 0.00 0.00 34.39 2.90
2198 4680 6.147328 GGCAAATCCTATACGAAGATTACACC 59.853 42.308 0.00 0.00 30.21 4.16
2199 4681 6.704493 GCAAATCCTATACGAAGATTACACCA 59.296 38.462 0.00 0.00 30.21 4.17
2200 4682 7.307219 GCAAATCCTATACGAAGATTACACCAC 60.307 40.741 0.00 0.00 30.21 4.16
2201 4683 5.779529 TCCTATACGAAGATTACACCACC 57.220 43.478 0.00 0.00 0.00 4.61
2202 4684 5.202765 TCCTATACGAAGATTACACCACCA 58.797 41.667 0.00 0.00 0.00 4.17
2203 4685 5.836898 TCCTATACGAAGATTACACCACCAT 59.163 40.000 0.00 0.00 0.00 3.55
2204 4686 6.015688 TCCTATACGAAGATTACACCACCATC 60.016 42.308 0.00 0.00 0.00 3.51
2205 4687 3.261981 ACGAAGATTACACCACCATCC 57.738 47.619 0.00 0.00 0.00 3.51
2206 4688 2.569853 ACGAAGATTACACCACCATCCA 59.430 45.455 0.00 0.00 0.00 3.41
2207 4689 3.199946 ACGAAGATTACACCACCATCCAT 59.800 43.478 0.00 0.00 0.00 3.41
2208 4690 3.561310 CGAAGATTACACCACCATCCATG 59.439 47.826 0.00 0.00 0.00 3.66
2221 4703 2.659428 CATCCATGGAGGGAGAAAACC 58.341 52.381 21.33 0.00 41.08 3.27
2222 4704 2.059756 TCCATGGAGGGAGAAAACCT 57.940 50.000 11.44 0.00 42.18 3.50
2231 4713 3.959433 GAGAAAACCTCCCTGACCC 57.041 57.895 0.00 0.00 35.87 4.46
2232 4714 0.036294 GAGAAAACCTCCCTGACCCG 60.036 60.000 0.00 0.00 35.87 5.28
2233 4715 0.767060 AGAAAACCTCCCTGACCCGT 60.767 55.000 0.00 0.00 0.00 5.28
2234 4716 0.978907 GAAAACCTCCCTGACCCGTA 59.021 55.000 0.00 0.00 0.00 4.02
2235 4717 0.689055 AAAACCTCCCTGACCCGTAC 59.311 55.000 0.00 0.00 0.00 3.67
2236 4718 1.538687 AAACCTCCCTGACCCGTACG 61.539 60.000 8.69 8.69 0.00 3.67
2237 4719 3.834799 CCTCCCTGACCCGTACGC 61.835 72.222 10.49 0.00 0.00 4.42
2238 4720 2.754658 CTCCCTGACCCGTACGCT 60.755 66.667 10.49 0.00 0.00 5.07
2239 4721 2.753043 TCCCTGACCCGTACGCTC 60.753 66.667 10.49 6.99 0.00 5.03
2240 4722 3.834799 CCCTGACCCGTACGCTCC 61.835 72.222 10.49 0.79 0.00 4.70
2241 4723 3.066190 CCTGACCCGTACGCTCCA 61.066 66.667 10.49 5.68 0.00 3.86
2242 4724 2.490217 CTGACCCGTACGCTCCAG 59.510 66.667 10.49 11.62 0.00 3.86
2278 4760 7.548427 TGTTGCAAATTTTTCTTTGAGATGTGA 59.452 29.630 0.00 0.00 38.17 3.58
2288 4770 1.878211 TGAGATGTGATGGTGGGCTA 58.122 50.000 0.00 0.00 0.00 3.93
2291 4773 3.202818 TGAGATGTGATGGTGGGCTATTT 59.797 43.478 0.00 0.00 0.00 1.40
2299 4781 2.603021 TGGTGGGCTATTTCTTTGCAA 58.397 42.857 0.00 0.00 0.00 4.08
2301 4783 3.195396 TGGTGGGCTATTTCTTTGCAATC 59.805 43.478 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.622630 TCTCTGACTGAGCTAACCCTAC 58.377 50.000 4.53 0.00 42.38 3.18
1 2 3.372133 CCTCTCTGACTGAGCTAACCCTA 60.372 52.174 4.53 0.00 42.38 3.53
14 15 1.941975 GTACTACCGAGCCTCTCTGAC 59.058 57.143 0.00 0.00 0.00 3.51
55 56 3.444029 ACTTTTCCTAAGCCCGGTAGTA 58.556 45.455 0.00 0.00 0.00 1.82
56 57 2.263545 ACTTTTCCTAAGCCCGGTAGT 58.736 47.619 0.00 0.00 0.00 2.73
57 58 3.345508 AACTTTTCCTAAGCCCGGTAG 57.654 47.619 0.00 0.00 0.00 3.18
75 76 5.402997 AGTTTAGCCACTCTACACCTAAC 57.597 43.478 0.00 0.00 30.15 2.34
79 80 2.490903 TCGAGTTTAGCCACTCTACACC 59.509 50.000 6.71 0.00 41.09 4.16
80 81 3.844577 TCGAGTTTAGCCACTCTACAC 57.155 47.619 6.71 0.00 41.09 2.90
81 82 4.705507 AGAATCGAGTTTAGCCACTCTACA 59.294 41.667 6.71 0.00 41.09 2.74
166 169 3.427773 GCCCGTTTTCCGTTATGCAATTA 60.428 43.478 0.00 0.00 33.66 1.40
174 177 3.056588 ACTAATGCCCGTTTTCCGTTA 57.943 42.857 0.00 0.00 33.66 3.18
179 182 3.425758 GCACACTACTAATGCCCGTTTTC 60.426 47.826 0.00 0.00 33.06 2.29
197 200 2.588596 CAGCACTGACGTGGCACA 60.589 61.111 19.09 0.00 41.51 4.57
198 201 1.714899 AAACAGCACTGACGTGGCAC 61.715 55.000 7.79 7.79 41.51 5.01
210 213 5.066764 GGAAGGTAACAACAAGTAAACAGCA 59.933 40.000 0.00 0.00 41.41 4.41
212 215 6.937436 AGGAAGGTAACAACAAGTAAACAG 57.063 37.500 0.00 0.00 41.41 3.16
219 222 5.299279 ACATGTCAAGGAAGGTAACAACAAG 59.701 40.000 0.00 0.00 41.41 3.16
220 223 5.197451 ACATGTCAAGGAAGGTAACAACAA 58.803 37.500 0.00 0.00 41.41 2.83
222 225 5.519722 CAACATGTCAAGGAAGGTAACAAC 58.480 41.667 0.00 0.00 41.41 3.32
223 226 4.037446 GCAACATGTCAAGGAAGGTAACAA 59.963 41.667 0.00 0.00 41.41 2.83
225 228 3.821033 AGCAACATGTCAAGGAAGGTAAC 59.179 43.478 0.00 0.00 0.00 2.50
230 233 4.053295 CCAAAAGCAACATGTCAAGGAAG 58.947 43.478 0.00 0.00 0.00 3.46
240 243 4.122046 GCAAAGTTCTCCAAAAGCAACAT 58.878 39.130 0.00 0.00 0.00 2.71
242 245 3.785486 AGCAAAGTTCTCCAAAAGCAAC 58.215 40.909 0.00 0.00 0.00 4.17
261 264 1.369689 CAACACAAGCACTGCGAGC 60.370 57.895 0.00 0.00 0.00 5.03
282 285 9.110502 GATAATCATCGGGACTAAACTTTTCTT 57.889 33.333 0.00 0.00 0.00 2.52
303 306 6.423604 TGCAATTGACGACATACATCGATAAT 59.576 34.615 10.34 0.00 45.13 1.28
304 307 5.751028 TGCAATTGACGACATACATCGATAA 59.249 36.000 10.34 0.00 45.13 1.75
305 308 5.285651 TGCAATTGACGACATACATCGATA 58.714 37.500 10.34 0.00 45.13 2.92
306 309 4.119136 TGCAATTGACGACATACATCGAT 58.881 39.130 10.34 0.00 45.13 3.59
307 310 3.516615 TGCAATTGACGACATACATCGA 58.483 40.909 10.34 0.00 45.13 3.59
309 312 5.023920 CAGTTGCAATTGACGACATACATC 58.976 41.667 16.35 0.00 0.00 3.06
310 313 4.694982 TCAGTTGCAATTGACGACATACAT 59.305 37.500 19.55 0.00 0.00 2.29
311 314 4.061596 TCAGTTGCAATTGACGACATACA 58.938 39.130 19.55 0.00 0.00 2.29
312 315 4.661993 TCAGTTGCAATTGACGACATAC 57.338 40.909 19.55 0.00 0.00 2.39
313 316 4.032786 CGATCAGTTGCAATTGACGACATA 59.967 41.667 24.81 3.42 0.00 2.29
314 317 3.181517 CGATCAGTTGCAATTGACGACAT 60.182 43.478 24.81 10.41 0.00 3.06
315 318 2.157474 CGATCAGTTGCAATTGACGACA 59.843 45.455 24.81 4.85 0.00 4.35
320 323 2.159430 CGAACCGATCAGTTGCAATTGA 59.841 45.455 24.57 24.57 0.00 2.57
375 378 4.012374 CAAGGCACTAAGGATGTCACAAT 58.988 43.478 0.00 0.00 38.49 2.71
450 2591 6.607004 TTTCCGAAAAGGGGCAATAATTAA 57.393 33.333 0.00 0.00 41.52 1.40
464 2605 7.095695 ACATCAAGAACTCTTTTTCCGAAAA 57.904 32.000 2.01 2.01 33.11 2.29
465 2606 6.693315 ACATCAAGAACTCTTTTTCCGAAA 57.307 33.333 0.00 0.00 33.11 3.46
466 2607 6.693315 AACATCAAGAACTCTTTTTCCGAA 57.307 33.333 0.00 0.00 33.11 4.30
467 2608 6.990349 ACTAACATCAAGAACTCTTTTTCCGA 59.010 34.615 0.00 0.00 33.11 4.55
468 2609 7.190920 ACTAACATCAAGAACTCTTTTTCCG 57.809 36.000 0.00 0.00 33.11 4.30
469 2610 8.231161 GCTACTAACATCAAGAACTCTTTTTCC 58.769 37.037 0.00 0.00 33.11 3.13
470 2611 8.994170 AGCTACTAACATCAAGAACTCTTTTTC 58.006 33.333 0.00 0.00 33.11 2.29
471 2612 8.910351 AGCTACTAACATCAAGAACTCTTTTT 57.090 30.769 0.00 0.00 33.11 1.94
472 2613 7.329717 CGAGCTACTAACATCAAGAACTCTTTT 59.670 37.037 0.00 0.00 33.11 2.27
473 2614 6.809196 CGAGCTACTAACATCAAGAACTCTTT 59.191 38.462 0.00 0.00 33.11 2.52
474 2615 6.151312 TCGAGCTACTAACATCAAGAACTCTT 59.849 38.462 0.00 0.00 36.45 2.85
475 2616 5.648526 TCGAGCTACTAACATCAAGAACTCT 59.351 40.000 0.00 0.00 0.00 3.24
476 2617 5.881447 TCGAGCTACTAACATCAAGAACTC 58.119 41.667 0.00 0.00 0.00 3.01
477 2618 5.648526 TCTCGAGCTACTAACATCAAGAACT 59.351 40.000 7.81 0.00 0.00 3.01
478 2619 5.740099 GTCTCGAGCTACTAACATCAAGAAC 59.260 44.000 7.81 0.00 0.00 3.01
479 2620 5.648526 AGTCTCGAGCTACTAACATCAAGAA 59.351 40.000 7.81 0.00 0.00 2.52
480 2621 5.186942 AGTCTCGAGCTACTAACATCAAGA 58.813 41.667 7.81 0.00 0.00 3.02
481 2622 5.493133 AGTCTCGAGCTACTAACATCAAG 57.507 43.478 7.81 0.00 0.00 3.02
482 2623 5.881447 GAAGTCTCGAGCTACTAACATCAA 58.119 41.667 7.81 0.00 0.00 2.57
483 2624 5.487153 GAAGTCTCGAGCTACTAACATCA 57.513 43.478 7.81 0.00 0.00 3.07
497 2638 0.302288 CGGCTACTCTCGAAGTCTCG 59.698 60.000 3.94 4.25 46.87 4.04
512 2653 4.269523 TTGAGCAAGTGGGCGGCT 62.270 61.111 9.56 0.00 41.35 5.52
513 2654 3.741476 CTTGAGCAAGTGGGCGGC 61.741 66.667 0.00 0.00 39.27 6.53
515 2656 2.670934 AGCTTGAGCAAGTGGGCG 60.671 61.111 11.47 0.00 45.16 6.13
528 2669 0.033405 AGGCAGGCATCAATCAGCTT 60.033 50.000 0.00 0.00 0.00 3.74
532 2673 2.219080 TTTGAGGCAGGCATCAATCA 57.781 45.000 20.16 5.67 44.42 2.57
548 2689 8.488651 ACGAAGGGAGTATGTATTTACTTTTG 57.511 34.615 0.00 0.00 32.59 2.44
549 2690 9.159364 GAACGAAGGGAGTATGTATTTACTTTT 57.841 33.333 0.00 0.00 32.59 2.27
558 2699 5.587388 ATTTCGAACGAAGGGAGTATGTA 57.413 39.130 9.46 0.00 35.38 2.29
559 2700 3.947910 TTTCGAACGAAGGGAGTATGT 57.052 42.857 9.46 0.00 35.38 2.29
560 2701 6.040878 AGTAATTTCGAACGAAGGGAGTATG 58.959 40.000 9.46 0.00 35.38 2.39
561 2702 6.218108 AGTAATTTCGAACGAAGGGAGTAT 57.782 37.500 9.46 0.00 35.38 2.12
562 2703 5.649782 AGTAATTTCGAACGAAGGGAGTA 57.350 39.130 9.46 0.00 35.38 2.59
563 2704 4.532314 AGTAATTTCGAACGAAGGGAGT 57.468 40.909 9.46 0.00 35.38 3.85
564 2705 7.535489 AATAAGTAATTTCGAACGAAGGGAG 57.465 36.000 9.46 0.00 35.38 4.30
565 2706 7.910441 AAATAAGTAATTTCGAACGAAGGGA 57.090 32.000 9.46 0.00 32.00 4.20
566 2707 8.231837 TCAAAATAAGTAATTTCGAACGAAGGG 58.768 33.333 9.46 0.00 36.76 3.95
567 2708 9.601971 TTCAAAATAAGTAATTTCGAACGAAGG 57.398 29.630 9.46 0.00 36.76 3.46
613 2754 9.832445 ACAAATGGATGTATCTAGACGTATTTT 57.168 29.630 0.00 0.00 0.00 1.82
614 2755 9.261180 CACAAATGGATGTATCTAGACGTATTT 57.739 33.333 0.00 0.00 30.84 1.40
615 2756 7.385205 GCACAAATGGATGTATCTAGACGTATT 59.615 37.037 0.00 0.00 30.84 1.89
616 2757 6.868864 GCACAAATGGATGTATCTAGACGTAT 59.131 38.462 0.00 0.00 30.84 3.06
617 2758 6.213677 GCACAAATGGATGTATCTAGACGTA 58.786 40.000 0.00 0.00 30.84 3.57
618 2759 5.050490 GCACAAATGGATGTATCTAGACGT 58.950 41.667 0.00 0.00 30.84 4.34
619 2760 4.148871 CGCACAAATGGATGTATCTAGACG 59.851 45.833 0.00 0.00 30.84 4.18
620 2761 5.175856 GTCGCACAAATGGATGTATCTAGAC 59.824 44.000 0.00 0.00 30.84 2.59
621 2762 5.163457 TGTCGCACAAATGGATGTATCTAGA 60.163 40.000 0.00 0.00 30.84 2.43
622 2763 5.049828 TGTCGCACAAATGGATGTATCTAG 58.950 41.667 0.00 0.00 30.84 2.43
623 2764 5.017294 TGTCGCACAAATGGATGTATCTA 57.983 39.130 0.00 0.00 30.84 1.98
624 2765 3.872696 TGTCGCACAAATGGATGTATCT 58.127 40.909 0.00 0.00 30.84 1.98
625 2766 4.094887 ACTTGTCGCACAAATGGATGTATC 59.905 41.667 3.84 0.00 37.69 2.24
626 2767 4.009675 ACTTGTCGCACAAATGGATGTAT 58.990 39.130 3.84 0.00 37.69 2.29
627 2768 3.407698 ACTTGTCGCACAAATGGATGTA 58.592 40.909 3.84 0.00 37.69 2.29
628 2769 2.229792 ACTTGTCGCACAAATGGATGT 58.770 42.857 3.84 0.00 37.69 3.06
629 2770 2.995466 ACTTGTCGCACAAATGGATG 57.005 45.000 3.84 0.00 37.69 3.51
630 2771 5.393027 GGAATTACTTGTCGCACAAATGGAT 60.393 40.000 3.84 0.00 37.69 3.41
631 2772 4.083003 GGAATTACTTGTCGCACAAATGGA 60.083 41.667 3.84 0.00 37.69 3.41
632 2773 4.165779 GGAATTACTTGTCGCACAAATGG 58.834 43.478 3.84 0.00 37.69 3.16
633 2774 3.845775 CGGAATTACTTGTCGCACAAATG 59.154 43.478 3.84 0.00 37.69 2.32
634 2775 3.749088 TCGGAATTACTTGTCGCACAAAT 59.251 39.130 3.84 0.00 37.69 2.32
635 2776 3.132160 TCGGAATTACTTGTCGCACAAA 58.868 40.909 3.84 0.00 37.69 2.83
636 2777 2.756829 TCGGAATTACTTGTCGCACAA 58.243 42.857 2.49 2.49 36.54 3.33
637 2778 2.442212 TCGGAATTACTTGTCGCACA 57.558 45.000 0.00 0.00 0.00 4.57
638 2779 2.471749 CGTTCGGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 0.00 5.34
639 2780 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
640 2781 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
641 2782 2.598589 TCCGTTCGGAATTACTTGTCG 58.401 47.619 11.66 0.00 0.00 4.35
642 2783 3.370061 CCTTCCGTTCGGAATTACTTGTC 59.630 47.826 23.69 0.00 42.61 3.18
643 2784 3.007182 TCCTTCCGTTCGGAATTACTTGT 59.993 43.478 23.69 0.00 42.61 3.16
644 2785 3.592059 TCCTTCCGTTCGGAATTACTTG 58.408 45.455 23.69 12.71 42.61 3.16
645 2786 3.260128 ACTCCTTCCGTTCGGAATTACTT 59.740 43.478 23.69 7.92 42.61 2.24
646 2787 2.830321 ACTCCTTCCGTTCGGAATTACT 59.170 45.455 23.69 7.58 42.61 2.24
647 2788 3.242549 ACTCCTTCCGTTCGGAATTAC 57.757 47.619 23.69 0.00 42.61 1.89
648 2789 3.763360 TGTACTCCTTCCGTTCGGAATTA 59.237 43.478 23.69 14.90 42.61 1.40
649 2790 2.564062 TGTACTCCTTCCGTTCGGAATT 59.436 45.455 23.69 12.73 42.61 2.17
650 2791 2.173519 TGTACTCCTTCCGTTCGGAAT 58.826 47.619 23.69 13.41 42.61 3.01
651 2792 1.619654 TGTACTCCTTCCGTTCGGAA 58.380 50.000 22.42 22.42 41.48 4.30
652 2793 1.619654 TTGTACTCCTTCCGTTCGGA 58.380 50.000 10.00 10.00 0.00 4.55
653 2794 2.268298 CATTGTACTCCTTCCGTTCGG 58.732 52.381 4.74 4.74 0.00 4.30
654 2795 2.955614 ACATTGTACTCCTTCCGTTCG 58.044 47.619 0.00 0.00 0.00 3.95
655 2796 4.179298 GGTACATTGTACTCCTTCCGTTC 58.821 47.826 22.65 2.70 0.00 3.95
656 2797 3.367703 CGGTACATTGTACTCCTTCCGTT 60.368 47.826 22.65 0.00 0.00 4.44
657 2798 2.165030 CGGTACATTGTACTCCTTCCGT 59.835 50.000 22.65 0.00 0.00 4.69
660 2801 3.445857 GCTCGGTACATTGTACTCCTTC 58.554 50.000 22.65 8.12 0.00 3.46
664 2805 2.426024 TCAGGCTCGGTACATTGTACTC 59.574 50.000 22.65 13.68 0.00 2.59
666 2807 2.953466 TCAGGCTCGGTACATTGTAC 57.047 50.000 16.97 16.97 0.00 2.90
697 2838 5.389642 TGTTTCATCTATTCGATCGTTGC 57.610 39.130 15.94 0.00 0.00 4.17
699 2840 7.434492 ACCTATGTTTCATCTATTCGATCGTT 58.566 34.615 15.94 6.78 0.00 3.85
700 2841 6.982852 ACCTATGTTTCATCTATTCGATCGT 58.017 36.000 15.94 0.00 0.00 3.73
712 2855 8.644216 TCGGTTATGTGTATACCTATGTTTCAT 58.356 33.333 0.00 0.00 0.00 2.57
794 2937 5.859648 GTGTTCTAGAGTGCAGTAAGAAGAC 59.140 44.000 21.05 21.05 34.60 3.01
825 2968 2.988493 GTGACGTACGTAATCTGGCAAA 59.012 45.455 22.87 0.00 0.00 3.68
835 2978 1.514678 AAGCCGGTGTGACGTACGTA 61.515 55.000 22.87 2.43 0.00 3.57
871 3016 4.250305 GGCGTGTGGGTGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
875 3020 1.742880 CTGATGGCGTGTGGGTGAG 60.743 63.158 0.00 0.00 0.00 3.51
882 3027 2.045634 ATGCTGCTGATGGCGTGT 60.046 55.556 0.00 0.00 45.43 4.49
886 3031 2.180432 TATCTGATGCTGCTGATGGC 57.820 50.000 0.00 0.00 42.22 4.40
952 3105 3.132111 AGAAGCTAGCTACCTTTGCTCTC 59.868 47.826 19.70 7.66 41.46 3.20
989 3142 1.651987 CGCCGCCATCTTTCTTCTAA 58.348 50.000 0.00 0.00 0.00 2.10
1011 3164 1.822186 GTTGAACACCCACACGCCT 60.822 57.895 0.00 0.00 0.00 5.52
1029 3182 1.746615 CAGCTCCATCACCCCGTTG 60.747 63.158 0.00 0.00 0.00 4.10
1066 3219 2.813908 GTACACCAGCGCCTTCCG 60.814 66.667 2.29 0.00 40.75 4.30
1072 3225 3.864686 CGGCATGTACACCAGCGC 61.865 66.667 0.00 0.00 0.00 5.92
1200 3353 1.475403 GAAGGGAGATGAGGTCGACA 58.525 55.000 18.91 0.00 0.00 4.35
1260 3413 1.659335 GCGGTTCTTGACGACGACA 60.659 57.895 0.00 0.00 0.00 4.35
1296 3449 2.608261 GCATATGCACGTCTAGAGGTCC 60.608 54.545 22.84 7.34 41.59 4.46
1308 3461 0.514691 GCTTAGGCGAGCATATGCAC 59.485 55.000 28.62 21.51 45.16 4.57
1318 3471 0.690762 AGTTGGGAAAGCTTAGGCGA 59.309 50.000 0.00 0.00 44.37 5.54
1418 3571 6.474751 GCGTTTATTCGTACTACCTTCATCTT 59.525 38.462 0.00 0.00 0.00 2.40
1424 3577 3.119495 ACCGCGTTTATTCGTACTACCTT 60.119 43.478 4.92 0.00 0.00 3.50
1434 3587 4.073169 TCATCACAAACCGCGTTTATTC 57.927 40.909 4.92 0.00 33.70 1.75
1447 3606 5.067544 ACATCACACAAACACATCATCACAA 59.932 36.000 0.00 0.00 0.00 3.33
1550 3718 9.771534 AGGAAGCTAGATACATCATACTTTTTC 57.228 33.333 0.00 0.00 0.00 2.29
1664 3832 1.307097 GATACCCTCGCACTACGTCT 58.693 55.000 0.00 0.00 44.19 4.18
1666 3834 2.020131 CGATACCCTCGCACTACGT 58.980 57.895 0.00 0.00 41.14 3.57
1675 3843 1.133407 GCCAGATCGATCGATACCCTC 59.867 57.143 29.45 17.95 34.60 4.30
1676 3844 1.178276 GCCAGATCGATCGATACCCT 58.822 55.000 29.45 19.51 34.60 4.34
1770 4219 1.681264 CCTTGGCCAACGAAAAGTCTT 59.319 47.619 16.05 0.00 0.00 3.01
1792 4241 3.138468 ACCCAAGACCTTTATAGGCATCC 59.862 47.826 0.00 0.00 46.22 3.51
1819 4301 5.182760 CAGAGAATATTTGGCAGATAAGGGC 59.817 44.000 1.49 0.00 0.00 5.19
1820 4302 6.302269 ACAGAGAATATTTGGCAGATAAGGG 58.698 40.000 1.49 0.00 0.00 3.95
1843 4325 2.200373 TGAGCTTTTTCTGCCCCTAC 57.800 50.000 0.00 0.00 0.00 3.18
2047 4529 6.414987 GCATTCTTTAGATGCGGTTGAATAAC 59.585 38.462 0.00 0.00 36.04 1.89
2048 4530 6.459573 GGCATTCTTTAGATGCGGTTGAATAA 60.460 38.462 3.34 0.00 41.85 1.40
2049 4531 5.008613 GGCATTCTTTAGATGCGGTTGAATA 59.991 40.000 3.34 0.00 41.85 1.75
2050 4532 4.202050 GGCATTCTTTAGATGCGGTTGAAT 60.202 41.667 3.34 0.00 41.85 2.57
2051 4533 3.128589 GGCATTCTTTAGATGCGGTTGAA 59.871 43.478 3.34 0.00 41.85 2.69
2052 4534 2.682856 GGCATTCTTTAGATGCGGTTGA 59.317 45.455 3.34 0.00 41.85 3.18
2053 4535 2.223572 GGGCATTCTTTAGATGCGGTTG 60.224 50.000 3.34 0.00 41.85 3.77
2054 4536 2.024414 GGGCATTCTTTAGATGCGGTT 58.976 47.619 3.34 0.00 41.85 4.44
2055 4537 1.064758 TGGGCATTCTTTAGATGCGGT 60.065 47.619 3.34 0.00 41.85 5.68
2056 4538 1.605710 CTGGGCATTCTTTAGATGCGG 59.394 52.381 3.34 0.00 41.85 5.69
2057 4539 1.002033 GCTGGGCATTCTTTAGATGCG 60.002 52.381 3.34 0.00 41.85 4.73
2058 4540 1.339291 GGCTGGGCATTCTTTAGATGC 59.661 52.381 0.64 0.64 40.34 3.91
2059 4541 2.883386 GAGGCTGGGCATTCTTTAGATG 59.117 50.000 0.00 0.00 0.00 2.90
2060 4542 2.782341 AGAGGCTGGGCATTCTTTAGAT 59.218 45.455 0.00 0.00 0.00 1.98
2061 4543 2.200081 AGAGGCTGGGCATTCTTTAGA 58.800 47.619 0.00 0.00 0.00 2.10
2062 4544 2.725221 AGAGGCTGGGCATTCTTTAG 57.275 50.000 0.00 0.00 0.00 1.85
2063 4545 2.843730 TGTAGAGGCTGGGCATTCTTTA 59.156 45.455 0.00 0.00 0.00 1.85
2064 4546 1.635487 TGTAGAGGCTGGGCATTCTTT 59.365 47.619 0.00 0.00 0.00 2.52
2065 4547 1.289160 TGTAGAGGCTGGGCATTCTT 58.711 50.000 0.00 0.00 0.00 2.52
2066 4548 1.516110 ATGTAGAGGCTGGGCATTCT 58.484 50.000 0.00 0.00 0.00 2.40
2067 4549 3.142174 GTTATGTAGAGGCTGGGCATTC 58.858 50.000 0.00 0.00 0.00 2.67
2068 4550 2.509548 TGTTATGTAGAGGCTGGGCATT 59.490 45.455 0.00 0.00 0.00 3.56
2069 4551 2.126882 TGTTATGTAGAGGCTGGGCAT 58.873 47.619 0.00 0.00 0.00 4.40
2070 4552 1.578897 TGTTATGTAGAGGCTGGGCA 58.421 50.000 0.00 0.00 0.00 5.36
2071 4553 2.938956 ATGTTATGTAGAGGCTGGGC 57.061 50.000 0.00 0.00 0.00 5.36
2072 4554 4.697352 GCATTATGTTATGTAGAGGCTGGG 59.303 45.833 0.00 0.00 0.00 4.45
2073 4555 5.180117 GTGCATTATGTTATGTAGAGGCTGG 59.820 44.000 0.00 0.00 0.00 4.85
2074 4556 5.759763 TGTGCATTATGTTATGTAGAGGCTG 59.240 40.000 0.00 0.00 0.00 4.85
2075 4557 5.760253 GTGTGCATTATGTTATGTAGAGGCT 59.240 40.000 0.00 0.00 0.00 4.58
2076 4558 5.333339 CGTGTGCATTATGTTATGTAGAGGC 60.333 44.000 0.00 0.00 0.00 4.70
2077 4559 5.177511 CCGTGTGCATTATGTTATGTAGAGG 59.822 44.000 0.00 0.00 0.00 3.69
2078 4560 5.983118 TCCGTGTGCATTATGTTATGTAGAG 59.017 40.000 0.00 0.00 0.00 2.43
2079 4561 5.751509 GTCCGTGTGCATTATGTTATGTAGA 59.248 40.000 0.00 0.00 0.00 2.59
2080 4562 5.522097 TGTCCGTGTGCATTATGTTATGTAG 59.478 40.000 0.00 0.00 0.00 2.74
2081 4563 5.420409 TGTCCGTGTGCATTATGTTATGTA 58.580 37.500 0.00 0.00 0.00 2.29
2082 4564 4.257731 TGTCCGTGTGCATTATGTTATGT 58.742 39.130 0.00 0.00 0.00 2.29
2083 4565 4.873768 TGTCCGTGTGCATTATGTTATG 57.126 40.909 0.00 0.00 0.00 1.90
2084 4566 4.697828 TGTTGTCCGTGTGCATTATGTTAT 59.302 37.500 0.00 0.00 0.00 1.89
2085 4567 4.065789 TGTTGTCCGTGTGCATTATGTTA 58.934 39.130 0.00 0.00 0.00 2.41
2086 4568 2.881513 TGTTGTCCGTGTGCATTATGTT 59.118 40.909 0.00 0.00 0.00 2.71
2087 4569 2.499197 TGTTGTCCGTGTGCATTATGT 58.501 42.857 0.00 0.00 0.00 2.29
2088 4570 3.058293 ACTTGTTGTCCGTGTGCATTATG 60.058 43.478 0.00 0.00 0.00 1.90
2089 4571 3.058293 CACTTGTTGTCCGTGTGCATTAT 60.058 43.478 0.00 0.00 0.00 1.28
2090 4572 2.289274 CACTTGTTGTCCGTGTGCATTA 59.711 45.455 0.00 0.00 0.00 1.90
2091 4573 1.065401 CACTTGTTGTCCGTGTGCATT 59.935 47.619 0.00 0.00 0.00 3.56
2092 4574 0.662619 CACTTGTTGTCCGTGTGCAT 59.337 50.000 0.00 0.00 0.00 3.96
2093 4575 2.094060 CACTTGTTGTCCGTGTGCA 58.906 52.632 0.00 0.00 0.00 4.57
2094 4576 1.298339 GCACTTGTTGTCCGTGTGC 60.298 57.895 0.00 0.00 45.23 4.57
2095 4577 0.449786 TTGCACTTGTTGTCCGTGTG 59.550 50.000 0.00 0.00 0.00 3.82
2096 4578 1.135517 GTTTGCACTTGTTGTCCGTGT 60.136 47.619 0.00 0.00 0.00 4.49
2097 4579 1.544686 GTTTGCACTTGTTGTCCGTG 58.455 50.000 0.00 0.00 0.00 4.94
2098 4580 0.098025 CGTTTGCACTTGTTGTCCGT 59.902 50.000 0.00 0.00 0.00 4.69
2099 4581 0.375454 TCGTTTGCACTTGTTGTCCG 59.625 50.000 0.00 0.00 0.00 4.79
2100 4582 1.400494 AGTCGTTTGCACTTGTTGTCC 59.600 47.619 0.00 0.00 0.00 4.02
2101 4583 2.095213 TCAGTCGTTTGCACTTGTTGTC 59.905 45.455 0.00 0.00 0.00 3.18
2102 4584 2.080693 TCAGTCGTTTGCACTTGTTGT 58.919 42.857 0.00 0.00 0.00 3.32
2103 4585 2.823196 TCAGTCGTTTGCACTTGTTG 57.177 45.000 0.00 0.00 0.00 3.33
2104 4586 3.840890 TTTCAGTCGTTTGCACTTGTT 57.159 38.095 0.00 0.00 0.00 2.83
2105 4587 3.840890 TTTTCAGTCGTTTGCACTTGT 57.159 38.095 0.00 0.00 0.00 3.16
2106 4588 6.804534 TTATTTTTCAGTCGTTTGCACTTG 57.195 33.333 0.00 0.00 0.00 3.16
2107 4589 6.809196 TGTTTATTTTTCAGTCGTTTGCACTT 59.191 30.769 0.00 0.00 0.00 3.16
2108 4590 6.326375 TGTTTATTTTTCAGTCGTTTGCACT 58.674 32.000 0.00 0.00 0.00 4.40
2109 4591 6.561945 TGTTTATTTTTCAGTCGTTTGCAC 57.438 33.333 0.00 0.00 0.00 4.57
2110 4592 7.276658 ACAATGTTTATTTTTCAGTCGTTTGCA 59.723 29.630 0.00 0.00 0.00 4.08
2111 4593 7.617557 ACAATGTTTATTTTTCAGTCGTTTGC 58.382 30.769 0.00 0.00 0.00 3.68
2112 4594 9.965748 AAACAATGTTTATTTTTCAGTCGTTTG 57.034 25.926 9.92 0.00 0.00 2.93
2114 4596 9.965748 CAAAACAATGTTTATTTTTCAGTCGTT 57.034 25.926 12.11 0.00 0.00 3.85
2115 4597 8.113675 GCAAAACAATGTTTATTTTTCAGTCGT 58.886 29.630 12.11 0.00 0.00 4.34
2116 4598 8.113062 TGCAAAACAATGTTTATTTTTCAGTCG 58.887 29.630 12.11 0.00 0.00 4.18
2117 4599 9.424659 CTGCAAAACAATGTTTATTTTTCAGTC 57.575 29.630 12.11 0.00 34.17 3.51
2118 4600 7.909641 GCTGCAAAACAATGTTTATTTTTCAGT 59.090 29.630 12.11 0.00 38.22 3.41
2119 4601 7.909121 TGCTGCAAAACAATGTTTATTTTTCAG 59.091 29.630 12.11 7.53 38.66 3.02
2120 4602 7.755591 TGCTGCAAAACAATGTTTATTTTTCA 58.244 26.923 12.11 4.09 0.00 2.69
2121 4603 8.612233 TTGCTGCAAAACAATGTTTATTTTTC 57.388 26.923 13.51 1.69 0.00 2.29
2122 4604 8.976986 TTTGCTGCAAAACAATGTTTATTTTT 57.023 23.077 24.24 0.00 29.89 1.94
2123 4605 8.976986 TTTTGCTGCAAAACAATGTTTATTTT 57.023 23.077 30.53 0.00 38.24 1.82
2124 4606 8.976986 TTTTTGCTGCAAAACAATGTTTATTT 57.023 23.077 33.11 0.00 42.02 1.40
2128 4610 8.976986 TTTATTTTTGCTGCAAAACAATGTTT 57.023 23.077 33.11 17.12 42.02 2.83
2129 4611 9.235537 GATTTATTTTTGCTGCAAAACAATGTT 57.764 25.926 33.11 19.33 42.02 2.71
2130 4612 8.404000 TGATTTATTTTTGCTGCAAAACAATGT 58.596 25.926 33.11 21.40 42.02 2.71
2131 4613 8.783999 TGATTTATTTTTGCTGCAAAACAATG 57.216 26.923 33.11 0.00 42.02 2.82
2132 4614 9.968870 ATTGATTTATTTTTGCTGCAAAACAAT 57.031 22.222 33.11 30.03 42.02 2.71
2133 4615 9.448294 GATTGATTTATTTTTGCTGCAAAACAA 57.552 25.926 33.11 29.42 42.02 2.83
2134 4616 8.838365 AGATTGATTTATTTTTGCTGCAAAACA 58.162 25.926 33.11 24.54 42.02 2.83
2137 4619 8.658609 GCTAGATTGATTTATTTTTGCTGCAAA 58.341 29.630 22.84 22.84 0.00 3.68
2138 4620 7.278424 GGCTAGATTGATTTATTTTTGCTGCAA 59.722 33.333 11.69 11.69 0.00 4.08
2139 4621 6.757947 GGCTAGATTGATTTATTTTTGCTGCA 59.242 34.615 0.00 0.00 0.00 4.41
2140 4622 6.201615 GGGCTAGATTGATTTATTTTTGCTGC 59.798 38.462 0.00 0.00 0.00 5.25
2141 4623 7.267128 TGGGCTAGATTGATTTATTTTTGCTG 58.733 34.615 0.00 0.00 0.00 4.41
2142 4624 7.418254 CCTGGGCTAGATTGATTTATTTTTGCT 60.418 37.037 0.00 0.00 0.00 3.91
2143 4625 6.703165 CCTGGGCTAGATTGATTTATTTTTGC 59.297 38.462 0.00 0.00 0.00 3.68
2144 4626 8.010733 TCCTGGGCTAGATTGATTTATTTTTG 57.989 34.615 0.00 0.00 0.00 2.44
2145 4627 8.645110 CATCCTGGGCTAGATTGATTTATTTTT 58.355 33.333 0.00 0.00 0.00 1.94
2146 4628 7.234166 CCATCCTGGGCTAGATTGATTTATTTT 59.766 37.037 0.00 0.00 32.67 1.82
2147 4629 6.723052 CCATCCTGGGCTAGATTGATTTATTT 59.277 38.462 0.00 0.00 32.67 1.40
2148 4630 6.251471 CCATCCTGGGCTAGATTGATTTATT 58.749 40.000 0.00 0.00 32.67 1.40
2149 4631 5.824421 CCATCCTGGGCTAGATTGATTTAT 58.176 41.667 0.00 0.00 32.67 1.40
2150 4632 5.246981 CCATCCTGGGCTAGATTGATTTA 57.753 43.478 0.00 0.00 32.67 1.40
2151 4633 4.109877 CCATCCTGGGCTAGATTGATTT 57.890 45.455 0.00 0.00 32.67 2.17
2152 4634 3.803186 CCATCCTGGGCTAGATTGATT 57.197 47.619 0.00 0.00 32.67 2.57
2164 4646 4.282881 GGATTTGCCCCATCCTGG 57.717 61.111 0.00 0.00 37.77 4.45
2167 4649 2.304761 TCGTATAGGATTTGCCCCATCC 59.695 50.000 0.00 0.00 40.72 3.51
2168 4650 3.695830 TCGTATAGGATTTGCCCCATC 57.304 47.619 0.00 0.00 37.37 3.51
2169 4651 3.650942 TCTTCGTATAGGATTTGCCCCAT 59.349 43.478 0.00 0.00 37.37 4.00
2170 4652 3.042682 TCTTCGTATAGGATTTGCCCCA 58.957 45.455 0.00 0.00 37.37 4.96
2171 4653 3.764237 TCTTCGTATAGGATTTGCCCC 57.236 47.619 0.00 0.00 37.37 5.80
2172 4654 6.147328 GTGTAATCTTCGTATAGGATTTGCCC 59.853 42.308 0.00 0.00 37.37 5.36
2173 4655 6.147328 GGTGTAATCTTCGTATAGGATTTGCC 59.853 42.308 0.00 0.00 32.78 4.52
2174 4656 6.704493 TGGTGTAATCTTCGTATAGGATTTGC 59.296 38.462 0.00 0.00 32.78 3.68
2175 4657 7.170998 GGTGGTGTAATCTTCGTATAGGATTTG 59.829 40.741 0.00 0.00 32.78 2.32
2176 4658 7.147620 TGGTGGTGTAATCTTCGTATAGGATTT 60.148 37.037 0.00 0.00 32.78 2.17
2177 4659 6.325545 TGGTGGTGTAATCTTCGTATAGGATT 59.674 38.462 0.00 0.00 34.59 3.01
2178 4660 5.836898 TGGTGGTGTAATCTTCGTATAGGAT 59.163 40.000 0.00 0.00 0.00 3.24
2179 4661 5.202765 TGGTGGTGTAATCTTCGTATAGGA 58.797 41.667 0.00 0.00 0.00 2.94
2180 4662 5.524971 TGGTGGTGTAATCTTCGTATAGG 57.475 43.478 0.00 0.00 0.00 2.57
2181 4663 6.157211 GGATGGTGGTGTAATCTTCGTATAG 58.843 44.000 0.00 0.00 0.00 1.31
2182 4664 5.599242 TGGATGGTGGTGTAATCTTCGTATA 59.401 40.000 0.00 0.00 0.00 1.47
2183 4665 4.407621 TGGATGGTGGTGTAATCTTCGTAT 59.592 41.667 0.00 0.00 0.00 3.06
2184 4666 3.770388 TGGATGGTGGTGTAATCTTCGTA 59.230 43.478 0.00 0.00 0.00 3.43
2185 4667 2.569853 TGGATGGTGGTGTAATCTTCGT 59.430 45.455 0.00 0.00 0.00 3.85
2186 4668 3.260475 TGGATGGTGGTGTAATCTTCG 57.740 47.619 0.00 0.00 0.00 3.79
2187 4669 3.885297 CCATGGATGGTGGTGTAATCTTC 59.115 47.826 5.56 0.00 43.05 2.87
2188 4670 3.902218 CCATGGATGGTGGTGTAATCTT 58.098 45.455 5.56 0.00 43.05 2.40
2189 4671 3.582998 CCATGGATGGTGGTGTAATCT 57.417 47.619 5.56 0.00 43.05 2.40
2200 4682 6.755425 GAGGTTTTCTCCCTCCATGGATGG 62.755 54.167 25.95 25.95 42.29 3.51
2201 4683 2.243221 AGGTTTTCTCCCTCCATGGATG 59.757 50.000 16.63 12.91 38.35 3.51
2202 4684 2.511637 GAGGTTTTCTCCCTCCATGGAT 59.488 50.000 16.63 0.00 42.29 3.41
2203 4685 1.916181 GAGGTTTTCTCCCTCCATGGA 59.084 52.381 15.27 15.27 42.29 3.41
2204 4686 2.426842 GAGGTTTTCTCCCTCCATGG 57.573 55.000 4.97 4.97 42.29 3.66
2213 4695 0.036294 CGGGTCAGGGAGGTTTTCTC 60.036 60.000 0.00 0.00 41.71 2.87
2214 4696 0.767060 ACGGGTCAGGGAGGTTTTCT 60.767 55.000 0.00 0.00 0.00 2.52
2215 4697 0.978907 TACGGGTCAGGGAGGTTTTC 59.021 55.000 0.00 0.00 0.00 2.29
2216 4698 0.689055 GTACGGGTCAGGGAGGTTTT 59.311 55.000 0.00 0.00 0.00 2.43
2217 4699 1.538687 CGTACGGGTCAGGGAGGTTT 61.539 60.000 7.57 0.00 0.00 3.27
2218 4700 1.980772 CGTACGGGTCAGGGAGGTT 60.981 63.158 7.57 0.00 0.00 3.50
2219 4701 2.362120 CGTACGGGTCAGGGAGGT 60.362 66.667 7.57 0.00 0.00 3.85
2220 4702 3.834799 GCGTACGGGTCAGGGAGG 61.835 72.222 18.39 0.00 0.00 4.30
2221 4703 2.754658 AGCGTACGGGTCAGGGAG 60.755 66.667 18.39 0.00 0.00 4.30
2222 4704 2.753043 GAGCGTACGGGTCAGGGA 60.753 66.667 18.39 0.00 42.75 4.20
2223 4705 3.834799 GGAGCGTACGGGTCAGGG 61.835 72.222 18.39 0.00 45.03 4.45
2224 4706 3.064987 CTGGAGCGTACGGGTCAGG 62.065 68.421 18.39 5.86 45.03 3.86
2225 4707 1.874345 AACTGGAGCGTACGGGTCAG 61.874 60.000 18.39 13.45 45.03 3.51
2226 4708 1.904865 AACTGGAGCGTACGGGTCA 60.905 57.895 18.39 3.83 45.03 4.02
2227 4709 1.445582 CAACTGGAGCGTACGGGTC 60.446 63.158 18.39 12.23 42.48 4.46
2228 4710 2.654877 CAACTGGAGCGTACGGGT 59.345 61.111 18.39 3.09 0.00 5.28
2229 4711 2.813908 GCAACTGGAGCGTACGGG 60.814 66.667 18.39 0.00 0.00 5.28
2230 4712 2.048597 TGCAACTGGAGCGTACGG 60.049 61.111 18.39 1.82 33.85 4.02
2231 4713 3.156334 GTGCAACTGGAGCGTACG 58.844 61.111 11.84 11.84 33.85 3.67
2278 4760 2.818921 TGCAAAGAAATAGCCCACCAT 58.181 42.857 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.