Multiple sequence alignment - TraesCS2D01G115100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G115100 chr2D 100.000 2689 0 0 1 2689 63705402 63708090 0.000000e+00 4966.0
1 TraesCS2D01G115100 chr2D 95.393 521 14 4 1872 2383 81388695 81388176 0.000000e+00 821.0
2 TraesCS2D01G115100 chr2D 92.012 338 22 2 1444 1776 263486762 263487099 1.130000e-128 470.0
3 TraesCS2D01G115100 chr2D 85.507 345 46 2 1359 1703 274427619 274427959 9.150000e-95 357.0
4 TraesCS2D01G115100 chr2D 90.833 240 16 4 978 1216 263479911 263480145 1.550000e-82 316.0
5 TraesCS2D01G115100 chr2D 95.302 149 6 1 1280 1427 263485086 263485234 4.480000e-58 235.0
6 TraesCS2D01G115100 chr2D 86.667 105 10 2 490 590 293863647 293863751 2.190000e-21 113.0
7 TraesCS2D01G115100 chr2D 100.000 46 0 0 622 667 148738070 148738115 4.770000e-13 86.1
8 TraesCS2D01G115100 chr2A 95.532 1119 40 8 665 1777 65399137 65400251 0.000000e+00 1781.0
9 TraesCS2D01G115100 chr2A 94.318 616 24 3 1778 2385 631629899 631629287 0.000000e+00 933.0
10 TraesCS2D01G115100 chr2A 96.400 250 9 0 1 250 65398377 65398626 1.930000e-111 412.0
11 TraesCS2D01G115100 chr2A 92.917 240 14 2 384 622 65398902 65399139 1.980000e-91 346.0
12 TraesCS2D01G115100 chr2A 85.446 213 20 5 2480 2689 65400495 65400699 7.540000e-51 211.0
13 TraesCS2D01G115100 chr2A 98.039 51 1 0 622 672 630090948 630090998 3.690000e-14 89.8
14 TraesCS2D01G115100 chr2B 93.934 1121 44 7 665 1777 99951722 99952826 0.000000e+00 1672.0
15 TraesCS2D01G115100 chr2B 86.577 298 30 7 2394 2685 99952841 99953134 1.200000e-83 320.0
16 TraesCS2D01G115100 chr2B 84.899 298 38 4 4 295 99797964 99798260 7.280000e-76 294.0
17 TraesCS2D01G115100 chr1B 94.357 762 30 2 1004 1762 322724219 322724970 0.000000e+00 1157.0
18 TraesCS2D01G115100 chr1B 95.465 441 19 1 1114 1554 676248319 676247880 0.000000e+00 702.0
19 TraesCS2D01G115100 chr1B 96.271 295 8 1 2093 2384 24495528 24495234 5.210000e-132 481.0
20 TraesCS2D01G115100 chr1A 93.648 614 25 3 1778 2383 415644229 415643622 0.000000e+00 905.0
21 TraesCS2D01G115100 chr1A 89.474 95 7 2 496 587 58193005 58193099 1.690000e-22 117.0
22 TraesCS2D01G115100 chr1A 100.000 48 0 0 622 669 440088226 440088179 3.690000e-14 89.8
23 TraesCS2D01G115100 chr6A 88.289 760 46 10 1010 1765 256666542 256665822 0.000000e+00 870.0
24 TraesCS2D01G115100 chr6A 100.000 49 0 0 623 671 214303839 214303791 1.030000e-14 91.6
25 TraesCS2D01G115100 chr4D 94.966 298 11 2 2090 2384 506131185 506130889 5.240000e-127 464.0
26 TraesCS2D01G115100 chr4D 90.783 217 18 2 1781 1995 36837243 36837027 3.390000e-74 289.0
27 TraesCS2D01G115100 chr4D 89.286 224 17 7 1776 1995 12596021 12596241 9.480000e-70 274.0
28 TraesCS2D01G115100 chr4D 91.053 190 14 3 1809 1995 342531346 342531535 1.240000e-63 254.0
29 TraesCS2D01G115100 chr4D 89.041 73 3 4 622 691 69190434 69190364 4.770000e-13 86.1
30 TraesCS2D01G115100 chr6D 94.613 297 12 2 2090 2383 453582862 453582567 8.770000e-125 457.0
31 TraesCS2D01G115100 chr6D 98.113 53 1 0 622 674 1548800 1548748 2.850000e-15 93.5
32 TraesCS2D01G115100 chr6D 100.000 48 0 0 622 669 413410085 413410038 3.690000e-14 89.8
33 TraesCS2D01G115100 chr5D 94.613 297 13 1 2090 2383 5804777 5804481 8.770000e-125 457.0
34 TraesCS2D01G115100 chr5D 94.613 297 12 2 2090 2383 489353010 489353305 8.770000e-125 457.0
35 TraesCS2D01G115100 chr5D 94.915 59 0 3 622 678 356899582 356899525 3.690000e-14 89.8
36 TraesCS2D01G115100 chr5D 86.567 67 7 2 621 686 491432611 491432546 3.710000e-09 73.1
37 TraesCS2D01G115100 chr1D 94.295 298 13 2 2090 2383 383252766 383253063 1.140000e-123 453.0
38 TraesCS2D01G115100 chr1D 87.879 99 9 1 493 588 400774747 400774649 2.190000e-21 113.0
39 TraesCS2D01G115100 chr4B 87.727 220 14 6 1778 1995 411522736 411522528 7.440000e-61 244.0
40 TraesCS2D01G115100 chr4B 88.660 97 8 2 493 586 591266015 591265919 6.080000e-22 115.0
41 TraesCS2D01G115100 chr7A 89.418 189 18 2 1809 1995 338628302 338628490 1.240000e-58 237.0
42 TraesCS2D01G115100 chr3A 88.889 189 19 2 1809 1995 100428975 100428787 5.790000e-57 231.0
43 TraesCS2D01G115100 chr3A 100.000 48 0 0 623 670 213131936 213131983 3.690000e-14 89.8
44 TraesCS2D01G115100 chr3A 96.078 51 2 0 622 672 594498287 594498337 1.720000e-12 84.2
45 TraesCS2D01G115100 chr3D 92.810 153 9 2 1781 1932 27896540 27896389 1.250000e-53 220.0
46 TraesCS2D01G115100 chr3D 89.691 97 7 1 493 586 356632905 356632809 1.310000e-23 121.0
47 TraesCS2D01G115100 chr7B 88.000 100 9 1 490 586 507944160 507944259 6.080000e-22 115.0
48 TraesCS2D01G115100 chr7B 87.500 104 8 3 493 592 610743846 610743744 6.080000e-22 115.0
49 TraesCS2D01G115100 chr5A 87.255 102 9 2 490 587 647359755 647359856 2.190000e-21 113.0
50 TraesCS2D01G115100 chr6B 100.000 49 0 0 622 670 657939700 657939652 1.030000e-14 91.6
51 TraesCS2D01G115100 chr4A 97.917 48 1 0 622 669 73825337 73825384 1.720000e-12 84.2
52 TraesCS2D01G115100 chr7D 94.444 54 2 1 620 672 54373404 54373457 6.170000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G115100 chr2D 63705402 63708090 2688 False 4966.0 4966 100.00000 1 2689 1 chr2D.!!$F1 2688
1 TraesCS2D01G115100 chr2D 81388176 81388695 519 True 821.0 821 95.39300 1872 2383 1 chr2D.!!$R1 511
2 TraesCS2D01G115100 chr2D 263485086 263487099 2013 False 352.5 470 93.65700 1280 1776 2 chr2D.!!$F6 496
3 TraesCS2D01G115100 chr2A 631629287 631629899 612 True 933.0 933 94.31800 1778 2385 1 chr2A.!!$R1 607
4 TraesCS2D01G115100 chr2A 65398377 65400699 2322 False 687.5 1781 92.57375 1 2689 4 chr2A.!!$F2 2688
5 TraesCS2D01G115100 chr2B 99951722 99953134 1412 False 996.0 1672 90.25550 665 2685 2 chr2B.!!$F2 2020
6 TraesCS2D01G115100 chr1B 322724219 322724970 751 False 1157.0 1157 94.35700 1004 1762 1 chr1B.!!$F1 758
7 TraesCS2D01G115100 chr1A 415643622 415644229 607 True 905.0 905 93.64800 1778 2383 1 chr1A.!!$R1 605
8 TraesCS2D01G115100 chr6A 256665822 256666542 720 True 870.0 870 88.28900 1010 1765 1 chr6A.!!$R2 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 363 0.033011 AGTCCGGTGGTAGATGCTCT 60.033 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 3501 1.009389 GCGTTTAGCTGTCGCTCAGT 61.009 55.0 19.26 0.82 45.15 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.827368 GCTCTAGAGACACCAAGGGG 59.173 60.000 24.24 0.00 41.29 4.79
62 63 2.273179 CCCGACGAGGAAGTGGTGA 61.273 63.158 0.00 0.00 45.00 4.02
70 71 3.262420 CGAGGAAGTGGTGAAATTCGAT 58.738 45.455 0.00 0.00 0.00 3.59
162 163 8.579850 TGATCTTTTGTGAACTTATTATGCCT 57.420 30.769 0.00 0.00 0.00 4.75
250 251 2.465813 CATGGGGTTGCAGGGATTTAA 58.534 47.619 0.00 0.00 0.00 1.52
251 252 2.230130 TGGGGTTGCAGGGATTTAAG 57.770 50.000 0.00 0.00 0.00 1.85
252 253 1.272985 TGGGGTTGCAGGGATTTAAGG 60.273 52.381 0.00 0.00 0.00 2.69
253 254 1.485124 GGGTTGCAGGGATTTAAGGG 58.515 55.000 0.00 0.00 0.00 3.95
254 255 1.485124 GGTTGCAGGGATTTAAGGGG 58.515 55.000 0.00 0.00 0.00 4.79
255 256 1.485124 GTTGCAGGGATTTAAGGGGG 58.515 55.000 0.00 0.00 0.00 5.40
269 270 2.741747 GGGGGTAGCTACGGATGC 59.258 66.667 17.48 3.28 0.00 3.91
270 271 2.338984 GGGGTAGCTACGGATGCG 59.661 66.667 17.48 4.58 35.28 4.73
271 272 2.338984 GGGTAGCTACGGATGCGG 59.661 66.667 17.48 0.00 35.28 5.69
272 273 2.338984 GGTAGCTACGGATGCGGG 59.661 66.667 17.48 4.47 35.28 6.13
273 274 2.338984 GTAGCTACGGATGCGGGG 59.661 66.667 12.44 4.07 35.28 5.73
274 275 2.196502 TAGCTACGGATGCGGGGA 59.803 61.111 12.44 0.00 35.28 4.81
275 276 1.456145 TAGCTACGGATGCGGGGAA 60.456 57.895 12.44 0.00 35.28 3.97
276 277 1.044231 TAGCTACGGATGCGGGGAAA 61.044 55.000 12.44 0.00 35.28 3.13
277 278 1.227853 GCTACGGATGCGGGGAAAT 60.228 57.895 12.44 0.00 0.00 2.17
278 279 1.507141 GCTACGGATGCGGGGAAATG 61.507 60.000 12.44 0.00 0.00 2.32
279 280 0.105964 CTACGGATGCGGGGAAATGA 59.894 55.000 12.44 0.00 0.00 2.57
280 281 0.105964 TACGGATGCGGGGAAATGAG 59.894 55.000 12.44 0.00 0.00 2.90
281 282 1.146041 CGGATGCGGGGAAATGAGA 59.854 57.895 0.00 0.00 0.00 3.27
282 283 0.882042 CGGATGCGGGGAAATGAGAG 60.882 60.000 0.00 0.00 0.00 3.20
283 284 0.536006 GGATGCGGGGAAATGAGAGG 60.536 60.000 0.00 0.00 0.00 3.69
284 285 0.181350 GATGCGGGGAAATGAGAGGT 59.819 55.000 0.00 0.00 0.00 3.85
285 286 0.107017 ATGCGGGGAAATGAGAGGTG 60.107 55.000 0.00 0.00 0.00 4.00
286 287 1.198094 TGCGGGGAAATGAGAGGTGA 61.198 55.000 0.00 0.00 0.00 4.02
287 288 0.744771 GCGGGGAAATGAGAGGTGAC 60.745 60.000 0.00 0.00 0.00 3.67
288 289 0.107654 CGGGGAAATGAGAGGTGACC 60.108 60.000 0.00 0.00 0.00 4.02
289 290 0.107654 GGGGAAATGAGAGGTGACCG 60.108 60.000 0.00 0.00 0.00 4.79
290 291 0.902531 GGGAAATGAGAGGTGACCGA 59.097 55.000 0.00 0.00 0.00 4.69
291 292 1.134670 GGGAAATGAGAGGTGACCGAG 60.135 57.143 0.00 0.00 0.00 4.63
292 293 1.646189 GAAATGAGAGGTGACCGAGC 58.354 55.000 0.00 0.00 0.00 5.03
293 294 0.108615 AAATGAGAGGTGACCGAGCG 60.109 55.000 0.00 0.00 0.00 5.03
294 295 1.251527 AATGAGAGGTGACCGAGCGT 61.252 55.000 0.00 0.00 0.00 5.07
295 296 0.393944 ATGAGAGGTGACCGAGCGTA 60.394 55.000 0.00 0.00 0.00 4.42
296 297 1.025113 TGAGAGGTGACCGAGCGTAG 61.025 60.000 0.00 0.00 0.00 3.51
297 298 1.002379 AGAGGTGACCGAGCGTAGT 60.002 57.895 0.00 0.00 0.00 2.73
298 299 0.608582 AGAGGTGACCGAGCGTAGTT 60.609 55.000 0.00 0.00 0.00 2.24
299 300 0.179169 GAGGTGACCGAGCGTAGTTC 60.179 60.000 0.00 0.00 0.00 3.01
300 301 0.892358 AGGTGACCGAGCGTAGTTCA 60.892 55.000 0.00 0.00 37.72 3.18
301 302 0.731855 GGTGACCGAGCGTAGTTCAC 60.732 60.000 0.00 0.00 37.72 3.18
317 318 5.263968 AGTTCACGAACATATAGACTGGG 57.736 43.478 12.21 0.00 43.47 4.45
318 319 4.954202 AGTTCACGAACATATAGACTGGGA 59.046 41.667 12.21 0.00 43.47 4.37
319 320 5.421056 AGTTCACGAACATATAGACTGGGAA 59.579 40.000 12.21 0.00 43.47 3.97
320 321 5.515797 TCACGAACATATAGACTGGGAAG 57.484 43.478 0.00 0.00 0.00 3.46
321 322 4.341235 TCACGAACATATAGACTGGGAAGG 59.659 45.833 0.00 0.00 0.00 3.46
322 323 3.641906 ACGAACATATAGACTGGGAAGGG 59.358 47.826 0.00 0.00 0.00 3.95
323 324 3.006967 CGAACATATAGACTGGGAAGGGG 59.993 52.174 0.00 0.00 0.00 4.79
324 325 2.991580 ACATATAGACTGGGAAGGGGG 58.008 52.381 0.00 0.00 0.00 5.40
342 343 3.850061 GGGGGAGGGGAATTGACA 58.150 61.111 0.00 0.00 0.00 3.58
343 344 2.092585 GGGGGAGGGGAATTGACAA 58.907 57.895 0.00 0.00 0.00 3.18
344 345 0.033109 GGGGGAGGGGAATTGACAAG 60.033 60.000 0.00 0.00 0.00 3.16
345 346 0.704664 GGGGAGGGGAATTGACAAGT 59.295 55.000 0.00 0.00 0.00 3.16
346 347 1.341089 GGGGAGGGGAATTGACAAGTC 60.341 57.143 7.10 7.10 0.00 3.01
347 348 1.341089 GGGAGGGGAATTGACAAGTCC 60.341 57.143 23.43 23.43 44.65 3.85
348 349 1.679032 GGAGGGGAATTGACAAGTCCG 60.679 57.143 24.22 0.00 46.27 4.79
349 350 0.328258 AGGGGAATTGACAAGTCCGG 59.672 55.000 24.22 0.00 46.27 5.14
350 351 0.037734 GGGGAATTGACAAGTCCGGT 59.962 55.000 24.22 0.00 46.27 5.28
351 352 1.165270 GGGAATTGACAAGTCCGGTG 58.835 55.000 24.22 0.00 46.27 4.94
352 353 1.165270 GGAATTGACAAGTCCGGTGG 58.835 55.000 18.14 0.00 35.76 4.61
353 354 1.544759 GGAATTGACAAGTCCGGTGGT 60.545 52.381 18.14 0.00 35.76 4.16
354 355 2.289819 GGAATTGACAAGTCCGGTGGTA 60.290 50.000 18.14 0.00 35.76 3.25
355 356 2.762535 ATTGACAAGTCCGGTGGTAG 57.237 50.000 0.00 0.00 0.00 3.18
356 357 1.707106 TTGACAAGTCCGGTGGTAGA 58.293 50.000 0.00 0.00 0.00 2.59
357 358 1.933021 TGACAAGTCCGGTGGTAGAT 58.067 50.000 0.00 0.00 0.00 1.98
358 359 1.548719 TGACAAGTCCGGTGGTAGATG 59.451 52.381 0.00 0.00 0.00 2.90
359 360 0.249398 ACAAGTCCGGTGGTAGATGC 59.751 55.000 0.00 0.00 0.00 3.91
360 361 0.537188 CAAGTCCGGTGGTAGATGCT 59.463 55.000 0.00 0.00 0.00 3.79
361 362 0.824759 AAGTCCGGTGGTAGATGCTC 59.175 55.000 0.00 0.00 0.00 4.26
362 363 0.033011 AGTCCGGTGGTAGATGCTCT 60.033 55.000 0.00 0.00 0.00 4.09
363 364 1.214673 AGTCCGGTGGTAGATGCTCTA 59.785 52.381 0.00 0.00 0.00 2.43
364 365 2.029623 GTCCGGTGGTAGATGCTCTAA 58.970 52.381 0.00 0.00 29.58 2.10
365 366 2.034812 GTCCGGTGGTAGATGCTCTAAG 59.965 54.545 0.00 0.00 29.58 2.18
366 367 1.269831 CCGGTGGTAGATGCTCTAAGC 60.270 57.143 0.00 0.00 42.82 3.09
377 378 2.205307 GCTCTAAGCATTCGTACGGT 57.795 50.000 16.52 1.45 41.89 4.83
378 379 3.344904 GCTCTAAGCATTCGTACGGTA 57.655 47.619 16.52 4.34 41.89 4.02
379 380 3.041492 GCTCTAAGCATTCGTACGGTAC 58.959 50.000 16.52 8.25 41.89 3.34
380 381 3.625938 CTCTAAGCATTCGTACGGTACC 58.374 50.000 16.52 0.16 0.00 3.34
381 382 3.282021 TCTAAGCATTCGTACGGTACCT 58.718 45.455 16.52 4.59 0.00 3.08
382 383 2.573941 AAGCATTCGTACGGTACCTC 57.426 50.000 16.52 0.00 0.00 3.85
398 541 4.878397 GGTACCTCTTTCTTCATGATGGTG 59.122 45.833 4.06 0.76 0.00 4.17
399 542 4.647564 ACCTCTTTCTTCATGATGGTGT 57.352 40.909 8.60 0.00 0.00 4.16
483 626 5.878116 TGTTCGGTTTTATACAGGGATTCAG 59.122 40.000 0.00 0.00 0.00 3.02
494 637 0.537188 GGGATTCAGCTCCTTCGTGA 59.463 55.000 0.00 0.00 35.50 4.35
502 645 6.422776 TTCAGCTCCTTCGTGAAATAAATC 57.577 37.500 0.00 0.00 0.00 2.17
520 663 9.669887 AAATAAATCCAGAAATAATGCAAGCAA 57.330 25.926 0.00 0.00 0.00 3.91
521 664 6.973229 AAATCCAGAAATAATGCAAGCAAC 57.027 33.333 0.00 0.00 0.00 4.17
524 667 4.766373 TCCAGAAATAATGCAAGCAACAGA 59.234 37.500 0.00 0.00 0.00 3.41
537 680 3.565307 AGCAACAGAATTTGAACCCTGA 58.435 40.909 0.00 0.00 0.00 3.86
567 711 2.467880 TCACTGTCCCTCTAACCATCC 58.532 52.381 0.00 0.00 0.00 3.51
590 734 0.948623 CACATGTTGGTTCGCTCCGA 60.949 55.000 0.00 0.00 0.00 4.55
604 748 2.728839 CGCTCCGATTTGAATCTCTAGC 59.271 50.000 2.58 6.86 33.24 3.42
608 752 4.938080 TCCGATTTGAATCTCTAGCAGTC 58.062 43.478 2.58 0.00 33.24 3.51
619 763 8.738106 TGAATCTCTAGCAGTCATATCTACATG 58.262 37.037 0.00 0.00 0.00 3.21
620 764 8.648698 AATCTCTAGCAGTCATATCTACATGT 57.351 34.615 2.69 2.69 0.00 3.21
621 765 9.746457 AATCTCTAGCAGTCATATCTACATGTA 57.254 33.333 5.25 5.25 0.00 2.29
622 766 9.746457 ATCTCTAGCAGTCATATCTACATGTAA 57.254 33.333 7.06 0.00 0.00 2.41
623 767 9.574516 TCTCTAGCAGTCATATCTACATGTAAA 57.425 33.333 7.06 0.00 0.00 2.01
628 772 9.836864 AGCAGTCATATCTACATGTAAATTTGA 57.163 29.630 7.06 7.54 0.00 2.69
640 784 8.568732 ACATGTAAATTTGAACTAAAACCACG 57.431 30.769 0.00 0.00 0.00 4.94
641 785 8.407064 ACATGTAAATTTGAACTAAAACCACGA 58.593 29.630 0.00 0.00 0.00 4.35
642 786 8.687301 CATGTAAATTTGAACTAAAACCACGAC 58.313 33.333 0.00 0.00 0.00 4.34
643 787 7.759465 TGTAAATTTGAACTAAAACCACGACA 58.241 30.769 0.00 0.00 0.00 4.35
644 788 8.242053 TGTAAATTTGAACTAAAACCACGACAA 58.758 29.630 0.00 0.00 0.00 3.18
645 789 7.749539 AAATTTGAACTAAAACCACGACAAG 57.250 32.000 0.00 0.00 0.00 3.16
646 790 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
647 791 6.981762 TTTGAACTAAAACCACGACAAGTA 57.018 33.333 0.00 0.00 0.00 2.24
648 792 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
649 793 7.556733 TTGAACTAAAACCACGACAAGTAAT 57.443 32.000 0.00 0.00 0.00 1.89
650 794 7.556733 TGAACTAAAACCACGACAAGTAATT 57.443 32.000 0.00 0.00 0.00 1.40
651 795 7.987649 TGAACTAAAACCACGACAAGTAATTT 58.012 30.769 0.00 0.00 0.00 1.82
652 796 7.911205 TGAACTAAAACCACGACAAGTAATTTG 59.089 33.333 0.00 0.00 42.68 2.32
653 797 6.731164 ACTAAAACCACGACAAGTAATTTGG 58.269 36.000 0.00 0.00 41.25 3.28
654 798 5.838531 AAAACCACGACAAGTAATTTGGA 57.161 34.783 0.00 0.00 41.25 3.53
655 799 5.838531 AAACCACGACAAGTAATTTGGAA 57.161 34.783 0.00 0.00 41.25 3.53
656 800 4.823790 ACCACGACAAGTAATTTGGAAC 57.176 40.909 0.00 0.00 41.25 3.62
657 801 3.249080 ACCACGACAAGTAATTTGGAACG 59.751 43.478 0.00 0.00 41.25 3.95
658 802 3.364565 CCACGACAAGTAATTTGGAACGG 60.365 47.826 0.00 0.00 41.25 4.44
659 803 3.495377 CACGACAAGTAATTTGGAACGGA 59.505 43.478 0.00 0.00 41.25 4.69
660 804 3.744426 ACGACAAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 41.25 4.63
661 805 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
662 806 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
663 807 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
668 812 5.901276 AGTAATTTGGAACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
763 909 2.480037 GGCCAGCGATTTTTGAAAAAGG 59.520 45.455 9.13 5.42 0.00 3.11
765 911 3.807071 GCCAGCGATTTTTGAAAAAGGAA 59.193 39.130 9.13 0.00 0.00 3.36
768 914 6.513230 GCCAGCGATTTTTGAAAAAGGAATTT 60.513 34.615 9.13 0.00 0.00 1.82
769 915 7.416817 CCAGCGATTTTTGAAAAAGGAATTTT 58.583 30.769 9.13 0.00 43.85 1.82
833 979 0.103208 AAAACCATTGGCGTGCGAAA 59.897 45.000 1.54 0.00 0.00 3.46
845 991 1.262950 CGTGCGAAACAATTGTGAGGA 59.737 47.619 12.82 5.12 0.00 3.71
851 997 3.916172 CGAAACAATTGTGAGGAATGCTG 59.084 43.478 12.82 0.00 0.00 4.41
894 1040 1.129811 CCAACGGCCGACAATCTAAAC 59.870 52.381 35.90 0.00 0.00 2.01
901 1047 1.347221 GACAATCTAAACGCCCGCG 59.653 57.895 7.69 7.69 46.03 6.46
932 1078 2.045926 CAAGGGGGAGGAAGCACG 60.046 66.667 0.00 0.00 0.00 5.34
1514 3188 2.586792 GACTGCAGGAAGGCCGAT 59.413 61.111 19.93 0.00 39.96 4.18
1547 3221 2.982130 GTGCTCCACCAGTCGGAT 59.018 61.111 0.00 0.00 35.59 4.18
1550 3224 3.023949 GCTCCACCAGTCGGATGCT 62.024 63.158 0.00 0.00 35.59 3.79
1611 3285 0.035739 GGGTCGAGGCTTGGTTGTTA 59.964 55.000 0.97 0.00 0.00 2.41
1632 3306 7.001674 TGTTATTGTGTTTACTGATTGGACCT 58.998 34.615 0.00 0.00 0.00 3.85
1658 3332 2.099098 CGTGAATTTAGGGACCCAATGC 59.901 50.000 14.60 3.84 0.00 3.56
1685 3362 3.601443 ATCTTGTTCGAGAGTTCCTGG 57.399 47.619 0.00 0.00 0.00 4.45
1762 3439 5.351189 GCAAATTTGTGGTGATAATTGGTCC 59.649 40.000 19.03 0.00 0.00 4.46
1765 3442 5.975693 TTTGTGGTGATAATTGGTCCTTC 57.024 39.130 0.00 0.00 0.00 3.46
1768 3445 4.288366 TGTGGTGATAATTGGTCCTTCTCA 59.712 41.667 0.00 0.00 0.00 3.27
1770 3447 4.200092 GGTGATAATTGGTCCTTCTCACC 58.800 47.826 10.76 10.76 40.46 4.02
1771 3448 4.080299 GGTGATAATTGGTCCTTCTCACCT 60.080 45.833 15.79 0.00 42.33 4.00
1772 3449 4.878397 GTGATAATTGGTCCTTCTCACCTG 59.122 45.833 0.00 0.00 34.66 4.00
1773 3450 4.536090 TGATAATTGGTCCTTCTCACCTGT 59.464 41.667 0.00 0.00 34.66 4.00
1774 3451 2.867109 ATTGGTCCTTCTCACCTGTG 57.133 50.000 0.00 0.00 34.66 3.66
1775 3452 1.801242 TTGGTCCTTCTCACCTGTGA 58.199 50.000 0.00 0.00 38.06 3.58
1802 3479 5.570234 TGTTCAAGAAAGCGTTTTTAGGT 57.430 34.783 0.00 0.00 0.00 3.08
1805 3482 3.630312 TCAAGAAAGCGTTTTTAGGTGCT 59.370 39.130 0.00 0.00 39.89 4.40
2168 3850 5.309323 TGTGTTATCTGGCTATTTGTTGC 57.691 39.130 0.00 0.00 0.00 4.17
2407 4105 6.678900 GCCTGTGAGTGATTTTTGGATCATAC 60.679 42.308 0.00 0.00 38.25 2.39
2487 4374 6.503560 TCCATTGGGTTATTATTAGTCGGT 57.496 37.500 2.09 0.00 34.93 4.69
2489 4376 6.059484 CCATTGGGTTATTATTAGTCGGTGT 58.941 40.000 0.00 0.00 0.00 4.16
2569 4458 6.486253 TTGAAGAAGTATGTTGCATCACTC 57.514 37.500 0.00 0.00 0.00 3.51
2573 4462 3.272574 AGTATGTTGCATCACTCAGGG 57.727 47.619 0.00 0.00 0.00 4.45
2594 4483 8.333235 TCAGGGTAATAGAACAACATAAATGGT 58.667 33.333 0.00 0.00 0.00 3.55
2609 4498 7.114754 ACATAAATGGTCACTGTGATCTTCAT 58.885 34.615 20.73 14.91 0.00 2.57
2670 4561 4.565652 GGTGATGTGTTGACTTACCTGGAT 60.566 45.833 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.179124 CTTGGTGTCTCTAGAGCGGC 60.179 60.000 15.35 8.16 0.00 6.53
38 39 3.372554 CTTCCTCGTCGGGCCCTTC 62.373 68.421 22.43 11.69 0.00 3.46
50 51 3.181506 GCATCGAATTTCACCACTTCCTC 60.182 47.826 0.00 0.00 0.00 3.71
70 71 8.737175 ACGATAGATAAAAATAGATACGAGGCA 58.263 33.333 0.00 0.00 41.38 4.75
110 111 6.746364 ACATAGAAAGTTTGTCGATCGACTAC 59.254 38.462 39.10 33.99 44.80 2.73
162 163 5.295787 GGGCACATCGAGTTTATACAAATCA 59.704 40.000 0.00 0.00 0.00 2.57
177 178 4.521130 ACATAGTATAGTGGGCACATCG 57.479 45.455 0.00 0.00 0.00 3.84
215 216 1.475280 CCCATGCAAGGTGATCAACAG 59.525 52.381 14.46 6.18 0.00 3.16
252 253 2.741747 GCATCCGTAGCTACCCCC 59.258 66.667 18.16 0.00 0.00 5.40
253 254 2.338984 CGCATCCGTAGCTACCCC 59.661 66.667 18.16 1.68 0.00 4.95
254 255 2.338984 CCGCATCCGTAGCTACCC 59.661 66.667 18.16 0.00 0.00 3.69
255 256 2.338984 CCCGCATCCGTAGCTACC 59.661 66.667 18.16 2.77 0.00 3.18
256 257 1.741327 TTCCCCGCATCCGTAGCTAC 61.741 60.000 14.19 14.19 0.00 3.58
257 258 1.044231 TTTCCCCGCATCCGTAGCTA 61.044 55.000 0.00 0.00 0.00 3.32
258 259 1.696097 ATTTCCCCGCATCCGTAGCT 61.696 55.000 0.00 0.00 0.00 3.32
259 260 1.227853 ATTTCCCCGCATCCGTAGC 60.228 57.895 0.00 0.00 0.00 3.58
260 261 0.105964 TCATTTCCCCGCATCCGTAG 59.894 55.000 0.00 0.00 0.00 3.51
261 262 0.105964 CTCATTTCCCCGCATCCGTA 59.894 55.000 0.00 0.00 0.00 4.02
262 263 1.153168 CTCATTTCCCCGCATCCGT 60.153 57.895 0.00 0.00 0.00 4.69
263 264 0.882042 CTCTCATTTCCCCGCATCCG 60.882 60.000 0.00 0.00 0.00 4.18
264 265 0.536006 CCTCTCATTTCCCCGCATCC 60.536 60.000 0.00 0.00 0.00 3.51
265 266 0.181350 ACCTCTCATTTCCCCGCATC 59.819 55.000 0.00 0.00 0.00 3.91
266 267 0.107017 CACCTCTCATTTCCCCGCAT 60.107 55.000 0.00 0.00 0.00 4.73
267 268 1.198094 TCACCTCTCATTTCCCCGCA 61.198 55.000 0.00 0.00 0.00 5.69
268 269 0.744771 GTCACCTCTCATTTCCCCGC 60.745 60.000 0.00 0.00 0.00 6.13
269 270 0.107654 GGTCACCTCTCATTTCCCCG 60.108 60.000 0.00 0.00 0.00 5.73
270 271 0.107654 CGGTCACCTCTCATTTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
271 272 0.902531 TCGGTCACCTCTCATTTCCC 59.097 55.000 0.00 0.00 0.00 3.97
272 273 1.740718 GCTCGGTCACCTCTCATTTCC 60.741 57.143 0.00 0.00 0.00 3.13
273 274 1.646189 GCTCGGTCACCTCTCATTTC 58.354 55.000 0.00 0.00 0.00 2.17
274 275 0.108615 CGCTCGGTCACCTCTCATTT 60.109 55.000 0.00 0.00 0.00 2.32
275 276 1.251527 ACGCTCGGTCACCTCTCATT 61.252 55.000 0.00 0.00 0.00 2.57
276 277 0.393944 TACGCTCGGTCACCTCTCAT 60.394 55.000 0.00 0.00 0.00 2.90
277 278 1.002990 TACGCTCGGTCACCTCTCA 60.003 57.895 0.00 0.00 0.00 3.27
278 279 1.025647 ACTACGCTCGGTCACCTCTC 61.026 60.000 0.00 0.00 0.00 3.20
279 280 0.608582 AACTACGCTCGGTCACCTCT 60.609 55.000 0.00 0.00 0.00 3.69
280 281 0.179169 GAACTACGCTCGGTCACCTC 60.179 60.000 0.00 0.00 0.00 3.85
281 282 0.892358 TGAACTACGCTCGGTCACCT 60.892 55.000 0.00 0.00 0.00 4.00
282 283 0.731855 GTGAACTACGCTCGGTCACC 60.732 60.000 6.20 0.00 0.00 4.02
283 284 1.063951 CGTGAACTACGCTCGGTCAC 61.064 60.000 7.16 7.16 46.92 3.67
284 285 1.208358 CGTGAACTACGCTCGGTCA 59.792 57.895 0.00 0.00 46.92 4.02
285 286 4.053067 CGTGAACTACGCTCGGTC 57.947 61.111 0.00 0.00 46.92 4.79
293 294 6.039047 TCCCAGTCTATATGTTCGTGAACTAC 59.961 42.308 13.40 3.57 41.67 2.73
294 295 6.124340 TCCCAGTCTATATGTTCGTGAACTA 58.876 40.000 13.40 4.79 41.67 2.24
295 296 4.954202 TCCCAGTCTATATGTTCGTGAACT 59.046 41.667 13.40 2.90 41.67 3.01
296 297 5.258456 TCCCAGTCTATATGTTCGTGAAC 57.742 43.478 5.80 5.80 41.50 3.18
297 298 5.163447 CCTTCCCAGTCTATATGTTCGTGAA 60.163 44.000 0.00 0.00 0.00 3.18
298 299 4.341235 CCTTCCCAGTCTATATGTTCGTGA 59.659 45.833 0.00 0.00 0.00 4.35
299 300 4.501571 CCCTTCCCAGTCTATATGTTCGTG 60.502 50.000 0.00 0.00 0.00 4.35
300 301 3.641906 CCCTTCCCAGTCTATATGTTCGT 59.358 47.826 0.00 0.00 0.00 3.85
301 302 3.006967 CCCCTTCCCAGTCTATATGTTCG 59.993 52.174 0.00 0.00 0.00 3.95
302 303 3.328050 CCCCCTTCCCAGTCTATATGTTC 59.672 52.174 0.00 0.00 0.00 3.18
303 304 3.327439 CCCCCTTCCCAGTCTATATGTT 58.673 50.000 0.00 0.00 0.00 2.71
304 305 2.991580 CCCCCTTCCCAGTCTATATGT 58.008 52.381 0.00 0.00 0.00 2.29
325 326 0.033109 CTTGTCAATTCCCCTCCCCC 60.033 60.000 0.00 0.00 0.00 5.40
326 327 0.704664 ACTTGTCAATTCCCCTCCCC 59.295 55.000 0.00 0.00 0.00 4.81
327 328 1.341089 GGACTTGTCAATTCCCCTCCC 60.341 57.143 10.22 0.00 0.00 4.30
328 329 1.679032 CGGACTTGTCAATTCCCCTCC 60.679 57.143 14.55 0.00 0.00 4.30
329 330 1.679032 CCGGACTTGTCAATTCCCCTC 60.679 57.143 14.55 0.00 0.00 4.30
330 331 0.328258 CCGGACTTGTCAATTCCCCT 59.672 55.000 14.55 0.00 0.00 4.79
331 332 0.037734 ACCGGACTTGTCAATTCCCC 59.962 55.000 9.46 0.83 0.00 4.81
332 333 1.165270 CACCGGACTTGTCAATTCCC 58.835 55.000 9.46 2.97 0.00 3.97
333 334 1.165270 CCACCGGACTTGTCAATTCC 58.835 55.000 9.46 11.13 0.00 3.01
334 335 1.892209 ACCACCGGACTTGTCAATTC 58.108 50.000 9.46 0.00 0.00 2.17
335 336 2.635915 TCTACCACCGGACTTGTCAATT 59.364 45.455 9.46 0.00 0.00 2.32
336 337 2.253610 TCTACCACCGGACTTGTCAAT 58.746 47.619 9.46 0.00 0.00 2.57
337 338 1.707106 TCTACCACCGGACTTGTCAA 58.293 50.000 9.46 0.00 0.00 3.18
338 339 1.548719 CATCTACCACCGGACTTGTCA 59.451 52.381 9.46 0.00 0.00 3.58
339 340 1.739371 GCATCTACCACCGGACTTGTC 60.739 57.143 9.46 0.00 0.00 3.18
340 341 0.249398 GCATCTACCACCGGACTTGT 59.751 55.000 9.46 1.34 0.00 3.16
341 342 0.537188 AGCATCTACCACCGGACTTG 59.463 55.000 9.46 0.00 0.00 3.16
342 343 0.824759 GAGCATCTACCACCGGACTT 59.175 55.000 9.46 0.00 0.00 3.01
343 344 2.506065 GAGCATCTACCACCGGACT 58.494 57.895 9.46 0.00 0.00 3.85
358 359 2.205307 ACCGTACGAATGCTTAGAGC 57.795 50.000 18.76 0.00 42.82 4.09
359 360 3.314635 AGGTACCGTACGAATGCTTAGAG 59.685 47.826 18.76 0.00 0.00 2.43
360 361 3.282021 AGGTACCGTACGAATGCTTAGA 58.718 45.455 18.76 0.00 0.00 2.10
361 362 3.314635 AGAGGTACCGTACGAATGCTTAG 59.685 47.826 18.76 0.00 0.00 2.18
362 363 3.282021 AGAGGTACCGTACGAATGCTTA 58.718 45.455 18.76 0.00 0.00 3.09
363 364 2.097825 AGAGGTACCGTACGAATGCTT 58.902 47.619 18.76 4.31 0.00 3.91
364 365 1.760192 AGAGGTACCGTACGAATGCT 58.240 50.000 18.76 3.23 0.00 3.79
365 366 2.573941 AAGAGGTACCGTACGAATGC 57.426 50.000 18.76 7.93 0.00 3.56
366 367 4.367386 AGAAAGAGGTACCGTACGAATG 57.633 45.455 18.76 2.16 0.00 2.67
367 368 4.460382 TGAAGAAAGAGGTACCGTACGAAT 59.540 41.667 18.76 7.06 0.00 3.34
368 369 3.820467 TGAAGAAAGAGGTACCGTACGAA 59.180 43.478 18.76 0.80 0.00 3.85
369 370 3.411446 TGAAGAAAGAGGTACCGTACGA 58.589 45.455 18.76 0.00 0.00 3.43
370 371 3.837213 TGAAGAAAGAGGTACCGTACG 57.163 47.619 8.69 8.69 0.00 3.67
371 372 5.320549 TCATGAAGAAAGAGGTACCGTAC 57.679 43.478 6.18 0.00 0.00 3.67
372 373 5.163447 CCATCATGAAGAAAGAGGTACCGTA 60.163 44.000 6.18 0.00 0.00 4.02
373 374 4.383118 CCATCATGAAGAAAGAGGTACCGT 60.383 45.833 6.18 0.00 0.00 4.83
374 375 4.122776 CCATCATGAAGAAAGAGGTACCG 58.877 47.826 6.18 0.00 0.00 4.02
375 376 4.878397 CACCATCATGAAGAAAGAGGTACC 59.122 45.833 2.73 2.73 0.00 3.34
376 377 5.352569 CACACCATCATGAAGAAAGAGGTAC 59.647 44.000 0.00 0.00 0.00 3.34
377 378 5.248248 TCACACCATCATGAAGAAAGAGGTA 59.752 40.000 0.00 0.00 0.00 3.08
378 379 4.042062 TCACACCATCATGAAGAAAGAGGT 59.958 41.667 0.00 0.00 0.00 3.85
379 380 4.582869 TCACACCATCATGAAGAAAGAGG 58.417 43.478 0.00 0.00 0.00 3.69
380 381 6.206243 AGTTTCACACCATCATGAAGAAAGAG 59.794 38.462 0.00 0.00 36.26 2.85
381 382 6.064060 AGTTTCACACCATCATGAAGAAAGA 58.936 36.000 0.00 0.00 36.26 2.52
382 383 6.323203 AGTTTCACACCATCATGAAGAAAG 57.677 37.500 0.00 0.00 36.26 2.62
398 541 3.639538 TGTTGCTACTCTCGAGTTTCAC 58.360 45.455 13.13 1.56 42.54 3.18
399 542 4.521130 ATGTTGCTACTCTCGAGTTTCA 57.479 40.909 13.13 2.22 42.54 2.69
473 616 0.539051 ACGAAGGAGCTGAATCCCTG 59.461 55.000 0.00 0.00 40.53 4.45
483 626 4.876107 TCTGGATTTATTTCACGAAGGAGC 59.124 41.667 0.00 0.00 0.00 4.70
494 637 9.669887 TTGCTTGCATTATTTCTGGATTTATTT 57.330 25.926 0.00 0.00 0.00 1.40
502 645 5.063180 TCTGTTGCTTGCATTATTTCTGG 57.937 39.130 0.00 0.00 0.00 3.86
520 663 3.152341 CAGCTCAGGGTTCAAATTCTGT 58.848 45.455 0.00 0.00 0.00 3.41
521 664 2.490903 CCAGCTCAGGGTTCAAATTCTG 59.509 50.000 0.00 0.00 0.00 3.02
524 667 1.928868 CCCAGCTCAGGGTTCAAATT 58.071 50.000 0.68 0.00 44.24 1.82
537 680 1.341156 GGGACAGTGATAGCCCAGCT 61.341 60.000 0.00 0.00 43.41 4.24
544 687 4.282195 GGATGGTTAGAGGGACAGTGATAG 59.718 50.000 0.00 0.00 0.00 2.08
619 763 8.617761 TTGTCGTGGTTTTAGTTCAAATTTAC 57.382 30.769 0.00 0.00 0.00 2.01
620 764 8.460428 ACTTGTCGTGGTTTTAGTTCAAATTTA 58.540 29.630 0.00 0.00 0.00 1.40
621 765 7.317390 ACTTGTCGTGGTTTTAGTTCAAATTT 58.683 30.769 0.00 0.00 0.00 1.82
622 766 6.859017 ACTTGTCGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
623 767 6.445357 ACTTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
624 768 5.883503 ACTTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
625 769 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
626 770 7.556733 AATTACTTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
627 771 7.377662 CCAAATTACTTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 32.65 3.01
628 772 7.067251 TCCAAATTACTTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 32.65 2.24
629 773 6.543100 TCCAAATTACTTGTCGTGGTTTTAGT 59.457 34.615 0.00 0.00 32.65 2.24
630 774 6.961576 TCCAAATTACTTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 32.65 1.85
631 775 6.939132 TCCAAATTACTTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 32.65 1.52
632 776 5.838531 TCCAAATTACTTGTCGTGGTTTT 57.161 34.783 0.00 0.00 32.65 2.43
633 777 5.584442 GTTCCAAATTACTTGTCGTGGTTT 58.416 37.500 0.00 0.00 32.65 3.27
634 778 4.260866 CGTTCCAAATTACTTGTCGTGGTT 60.261 41.667 0.00 0.00 32.65 3.67
635 779 3.249080 CGTTCCAAATTACTTGTCGTGGT 59.751 43.478 0.00 0.00 32.65 4.16
636 780 3.364565 CCGTTCCAAATTACTTGTCGTGG 60.365 47.826 0.00 0.00 32.65 4.94
637 781 3.495377 TCCGTTCCAAATTACTTGTCGTG 59.505 43.478 0.00 0.00 32.65 4.35
638 782 3.731089 TCCGTTCCAAATTACTTGTCGT 58.269 40.909 0.00 0.00 32.65 4.34
639 783 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
640 784 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
641 785 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
642 786 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
643 787 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
644 788 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
645 789 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
646 790 6.384886 ACTTATACTCCCTCCGTTCCAAATTA 59.615 38.462 0.00 0.00 0.00 1.40
647 791 5.191124 ACTTATACTCCCTCCGTTCCAAATT 59.809 40.000 0.00 0.00 0.00 1.82
648 792 4.720273 ACTTATACTCCCTCCGTTCCAAAT 59.280 41.667 0.00 0.00 0.00 2.32
649 793 4.098894 ACTTATACTCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
650 794 3.716431 ACTTATACTCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
651 795 3.393426 ACTTATACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
652 796 4.321824 GCATACTTATACTCCCTCCGTTCC 60.322 50.000 0.00 0.00 0.00 3.62
653 797 4.523558 AGCATACTTATACTCCCTCCGTTC 59.476 45.833 0.00 0.00 0.00 3.95
654 798 4.481072 AGCATACTTATACTCCCTCCGTT 58.519 43.478 0.00 0.00 0.00 4.44
655 799 4.115398 AGCATACTTATACTCCCTCCGT 57.885 45.455 0.00 0.00 0.00 4.69
656 800 5.470047 AAAGCATACTTATACTCCCTCCG 57.530 43.478 0.00 0.00 34.05 4.63
657 801 8.368962 AGATAAAGCATACTTATACTCCCTCC 57.631 38.462 0.00 0.00 34.05 4.30
658 802 9.250246 AGAGATAAAGCATACTTATACTCCCTC 57.750 37.037 0.00 0.00 34.05 4.30
711 857 5.121105 GTGTATATGTGGTTCCTAACACCC 58.879 45.833 0.00 0.00 36.80 4.61
788 934 1.452108 CCCGCTCCCTTTGACCATC 60.452 63.158 0.00 0.00 0.00 3.51
826 972 3.347958 TTCCTCACAATTGTTTCGCAC 57.652 42.857 8.77 0.00 0.00 5.34
833 979 3.489355 TGACAGCATTCCTCACAATTGT 58.511 40.909 4.92 4.92 0.00 2.71
845 991 0.833287 ATCCTACGGCTGACAGCATT 59.167 50.000 27.87 16.28 44.75 3.56
851 997 2.159198 TCGGTTAAATCCTACGGCTGAC 60.159 50.000 0.00 0.00 0.00 3.51
901 1047 1.683938 CCCCTTGGTTTTATCGGGACC 60.684 57.143 0.00 0.00 37.05 4.46
932 1078 4.414732 CGGCTAGGGTTTAGTCGC 57.585 61.111 0.00 0.00 35.84 5.19
1544 3218 3.221222 AGGTACTCGCCAGCATCC 58.779 61.111 0.00 0.00 0.00 3.51
1611 3285 7.362920 GCATAAGGTCCAATCAGTAAACACAAT 60.363 37.037 0.00 0.00 0.00 2.71
1632 3306 3.054287 TGGGTCCCTAAATTCACGCATAA 60.054 43.478 10.00 0.00 0.00 1.90
1658 3332 6.095720 AGGAACTCTCGAACAAGATAGTAAGG 59.904 42.308 0.00 0.00 29.16 2.69
1685 3362 7.989170 TCATCCAGTACATTCATATGCCATATC 59.011 37.037 0.00 0.00 35.03 1.63
1746 3423 4.636206 GTGAGAAGGACCAATTATCACCAC 59.364 45.833 9.15 0.00 41.03 4.16
1747 3424 4.843728 GTGAGAAGGACCAATTATCACCA 58.156 43.478 9.15 0.00 41.03 4.17
1768 3445 3.213206 TCTTGAACATTGCTCACAGGT 57.787 42.857 0.00 0.00 0.00 4.00
1770 3447 3.979495 GCTTTCTTGAACATTGCTCACAG 59.021 43.478 0.00 0.00 0.00 3.66
1771 3448 3.548616 CGCTTTCTTGAACATTGCTCACA 60.549 43.478 0.00 0.00 0.00 3.58
1772 3449 2.975851 CGCTTTCTTGAACATTGCTCAC 59.024 45.455 0.00 0.00 0.00 3.51
1773 3450 2.618241 ACGCTTTCTTGAACATTGCTCA 59.382 40.909 0.00 0.00 0.00 4.26
1774 3451 3.273919 ACGCTTTCTTGAACATTGCTC 57.726 42.857 0.00 0.00 0.00 4.26
1775 3452 3.715628 AACGCTTTCTTGAACATTGCT 57.284 38.095 0.00 0.00 0.00 3.91
1776 3453 4.777140 AAAACGCTTTCTTGAACATTGC 57.223 36.364 0.00 0.00 0.00 3.56
1824 3501 1.009389 GCGTTTAGCTGTCGCTCAGT 61.009 55.000 19.26 0.82 45.15 3.41
1959 3636 4.157120 GGGCCGCCTTCTTCGCTA 62.157 66.667 9.86 0.00 0.00 4.26
2407 4105 7.905604 TCATTCCACACAATTCAGTAAGTAG 57.094 36.000 0.00 0.00 0.00 2.57
2416 4114 5.472148 TGCTTGATTCATTCCACACAATTC 58.528 37.500 0.00 0.00 0.00 2.17
2479 4177 4.059511 CACACATAACCAACACCGACTAA 58.940 43.478 0.00 0.00 0.00 2.24
2481 4179 2.158871 ACACACATAACCAACACCGACT 60.159 45.455 0.00 0.00 0.00 4.18
2487 4374 8.234136 TGGTTTATTAACACACATAACCAACA 57.766 30.769 0.00 0.00 35.92 3.33
2569 4458 8.519799 ACCATTTATGTTGTTCTATTACCCTG 57.480 34.615 0.00 0.00 0.00 4.45
2573 4462 9.988350 CAGTGACCATTTATGTTGTTCTATTAC 57.012 33.333 0.00 0.00 0.00 1.89
2594 4483 4.022935 GTGCCAAAATGAAGATCACAGTGA 60.023 41.667 5.50 5.50 0.00 3.41
2641 4532 0.660488 GTCAACACATCACCGCAACA 59.340 50.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.