Multiple sequence alignment - TraesCS2D01G114800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G114800 chr2D 100.000 3628 0 0 1 3628 63691572 63687945 0.000000e+00 6700.0
1 TraesCS2D01G114800 chr2A 91.126 2051 115 35 618 2635 65327005 65324989 0.000000e+00 2717.0
2 TraesCS2D01G114800 chr2A 95.798 238 6 1 3240 3477 65324084 65323851 7.350000e-102 381.0
3 TraesCS2D01G114800 chr2A 94.872 234 8 2 2808 3038 65324471 65324239 2.660000e-96 363.0
4 TraesCS2D01G114800 chr2A 95.580 181 3 2 2637 2816 65324853 65324677 5.930000e-73 285.0
5 TraesCS2D01G114800 chr2A 94.194 155 4 4 3469 3620 65323807 65323655 7.830000e-57 231.0
6 TraesCS2D01G114800 chr2A 82.456 228 34 2 2373 2594 65325308 65325081 1.030000e-45 195.0
7 TraesCS2D01G114800 chr2A 83.529 170 14 5 1 168 65349495 65349338 2.920000e-31 147.0
8 TraesCS2D01G114800 chr2A 93.548 62 4 0 3067 3128 65324160 65324099 3.860000e-15 93.5
9 TraesCS2D01G114800 chr2B 90.257 2063 116 37 618 2633 99758415 99756391 0.000000e+00 2617.0
10 TraesCS2D01G114800 chr2B 92.875 407 15 8 2638 3038 99756247 99755849 2.430000e-161 579.0
11 TraesCS2D01G114800 chr2B 91.228 399 21 3 3054 3451 99755780 99755395 6.900000e-147 531.0
12 TraesCS2D01G114800 chr2B 87.845 181 22 0 2374 2554 99756702 99756522 2.840000e-51 213.0
13 TraesCS2D01G114800 chr2B 92.414 145 9 2 1 143 99758931 99758787 4.750000e-49 206.0
14 TraesCS2D01G114800 chr2B 90.968 155 9 4 3478 3628 99754806 99754653 1.710000e-48 204.0
15 TraesCS2D01G114800 chrUn 84.466 206 13 8 167 367 175473990 175473799 6.190000e-43 185.0
16 TraesCS2D01G114800 chr7D 84.314 204 13 8 167 365 412100698 412100509 8.000000e-42 182.0
17 TraesCS2D01G114800 chr7D 83.756 197 14 8 170 362 45145959 45145777 1.730000e-38 171.0
18 TraesCS2D01G114800 chr7D 83.756 197 14 7 170 362 433896563 433896381 1.730000e-38 171.0
19 TraesCS2D01G114800 chr7D 81.865 193 14 6 170 362 29807465 29807294 3.780000e-30 143.0
20 TraesCS2D01G114800 chr7B 83.251 203 16 7 167 365 24413662 24413474 1.730000e-38 171.0
21 TraesCS2D01G114800 chr7A 83.756 197 13 7 170 362 522973980 522973799 6.230000e-38 169.0
22 TraesCS2D01G114800 chr7A 95.556 45 2 0 167 211 39470732 39470776 5.030000e-09 73.1
23 TraesCS2D01G114800 chr5D 83.756 197 13 8 170 362 421386348 421386167 6.230000e-38 169.0
24 TraesCS2D01G114800 chr6A 82.828 198 15 7 168 361 556980540 556980722 3.750000e-35 159.0
25 TraesCS2D01G114800 chr6A 83.673 147 14 6 218 363 546597731 546597868 2.940000e-26 130.0
26 TraesCS2D01G114800 chr5A 82.412 199 17 5 167 361 515773708 515773892 1.350000e-34 158.0
27 TraesCS2D01G114800 chr5A 81.463 205 18 11 163 363 687867521 687867333 2.260000e-32 150.0
28 TraesCS2D01G114800 chr5A 81.726 197 16 10 170 361 311539705 311539524 2.920000e-31 147.0
29 TraesCS2D01G114800 chr3D 86.207 116 8 4 250 365 7325054 7324947 6.360000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G114800 chr2D 63687945 63691572 3627 True 6700.000000 6700 100.000000 1 3628 1 chr2D.!!$R1 3627
1 TraesCS2D01G114800 chr2A 65323655 65327005 3350 True 609.357143 2717 92.510571 618 3620 7 chr2A.!!$R2 3002
2 TraesCS2D01G114800 chr2B 99754653 99758931 4278 True 725.000000 2617 90.931167 1 3628 6 chr2B.!!$R1 3627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 569 0.036388 ACACACCCATACGCTTCCAG 60.036 55.0 0.00 0.0 0.00 3.86 F
968 1097 0.157475 GTTCGTTCGTTCGTCCGTTC 59.843 55.0 2.67 0.0 0.00 3.95 F
1629 1798 0.173708 GTCGAGAATTCTCCCGTGCT 59.826 55.0 26.08 0.0 39.79 4.40 F
2370 2545 0.842030 ACCTGATGCCCAGACTTCCA 60.842 55.0 4.93 0.0 45.78 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 1917 0.171007 CTGGATTGCCGCGACAAAAT 59.829 50.000 12.92 3.58 36.79 1.82 R
2350 2525 0.329596 GGAAGTCTGGGCATCAGGTT 59.670 55.000 6.48 1.82 43.53 3.50 R
2435 2613 0.538287 GTCCCATAGGCTTGGCATCC 60.538 60.000 9.41 0.00 35.29 3.51 R
3203 3797 1.375268 GGCTCTCGCTGAAGCAAGT 60.375 57.895 2.79 0.00 42.21 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.430765 GGTGACGACCCGACGCAT 62.431 66.667 0.00 0.00 36.03 4.73
38 39 2.106131 ACACACGTGAGCAAGCGA 59.894 55.556 25.01 0.00 0.00 4.93
114 116 0.712222 CTTTCCTTCGTACGTTCGGC 59.288 55.000 16.05 0.00 0.00 5.54
117 119 1.804326 CCTTCGTACGTTCGGCCTG 60.804 63.158 16.05 0.00 0.00 4.85
119 121 1.342082 CTTCGTACGTTCGGCCTGTG 61.342 60.000 16.05 0.00 0.00 3.66
122 124 1.005867 GTACGTTCGGCCTGTGGAA 60.006 57.895 0.00 0.00 0.00 3.53
136 138 2.554032 CTGTGGAAGCGTTTGATTTCCT 59.446 45.455 0.00 0.00 40.77 3.36
139 141 1.402852 GGAAGCGTTTGATTTCCTGGC 60.403 52.381 0.00 0.00 37.86 4.85
140 142 1.269448 GAAGCGTTTGATTTCCTGGCA 59.731 47.619 0.00 0.00 0.00 4.92
141 143 0.598065 AGCGTTTGATTTCCTGGCAC 59.402 50.000 0.00 0.00 0.00 5.01
142 144 0.729140 GCGTTTGATTTCCTGGCACG 60.729 55.000 0.00 0.00 0.00 5.34
143 145 0.729140 CGTTTGATTTCCTGGCACGC 60.729 55.000 0.00 0.00 0.00 5.34
144 146 0.729140 GTTTGATTTCCTGGCACGCG 60.729 55.000 3.53 3.53 0.00 6.01
145 147 1.861542 TTTGATTTCCTGGCACGCGG 61.862 55.000 12.47 0.00 0.00 6.46
146 148 2.435938 GATTTCCTGGCACGCGGA 60.436 61.111 12.47 0.00 0.00 5.54
147 149 2.033448 ATTTCCTGGCACGCGGAA 59.967 55.556 12.47 2.78 38.45 4.30
148 150 1.376609 GATTTCCTGGCACGCGGAAT 61.377 55.000 12.47 0.00 39.58 3.01
149 151 1.656818 ATTTCCTGGCACGCGGAATG 61.657 55.000 12.47 0.00 39.58 2.67
150 152 2.739849 TTTCCTGGCACGCGGAATGA 62.740 55.000 12.47 0.00 39.58 2.57
151 153 2.739849 TTCCTGGCACGCGGAATGAA 62.740 55.000 12.47 2.36 35.99 2.57
152 154 2.480555 CTGGCACGCGGAATGAAC 59.519 61.111 12.47 0.00 0.00 3.18
153 155 3.039202 CTGGCACGCGGAATGAACC 62.039 63.158 12.47 0.93 0.00 3.62
162 164 1.803334 CGGAATGAACCGTCCTTTGA 58.197 50.000 0.00 0.00 46.70 2.69
163 165 2.356135 CGGAATGAACCGTCCTTTGAT 58.644 47.619 0.00 0.00 46.70 2.57
164 166 2.747446 CGGAATGAACCGTCCTTTGATT 59.253 45.455 0.00 0.00 46.70 2.57
165 167 3.426159 CGGAATGAACCGTCCTTTGATTG 60.426 47.826 0.00 0.00 46.70 2.67
166 168 3.501950 GAATGAACCGTCCTTTGATTGC 58.498 45.455 0.00 0.00 0.00 3.56
167 169 2.270352 TGAACCGTCCTTTGATTGCT 57.730 45.000 0.00 0.00 0.00 3.91
168 170 3.410631 TGAACCGTCCTTTGATTGCTA 57.589 42.857 0.00 0.00 0.00 3.49
169 171 3.745799 TGAACCGTCCTTTGATTGCTAA 58.254 40.909 0.00 0.00 0.00 3.09
170 172 3.751175 TGAACCGTCCTTTGATTGCTAAG 59.249 43.478 0.00 0.00 0.00 2.18
171 173 2.711542 ACCGTCCTTTGATTGCTAAGG 58.288 47.619 0.00 0.00 44.98 2.69
172 174 1.401905 CCGTCCTTTGATTGCTAAGGC 59.598 52.381 0.00 0.00 43.81 4.35
173 175 1.062587 CGTCCTTTGATTGCTAAGGCG 59.937 52.381 0.00 0.00 43.81 5.52
174 176 1.401905 GTCCTTTGATTGCTAAGGCGG 59.598 52.381 0.00 0.00 43.81 6.13
175 177 1.004277 TCCTTTGATTGCTAAGGCGGT 59.996 47.619 0.00 0.00 43.81 5.68
176 178 1.133025 CCTTTGATTGCTAAGGCGGTG 59.867 52.381 0.00 0.00 39.52 4.94
177 179 1.812571 CTTTGATTGCTAAGGCGGTGT 59.187 47.619 0.00 0.00 42.25 4.16
178 180 1.904287 TTGATTGCTAAGGCGGTGTT 58.096 45.000 0.00 0.00 42.25 3.32
179 181 1.904287 TGATTGCTAAGGCGGTGTTT 58.096 45.000 0.00 0.00 42.25 2.83
180 182 1.539388 TGATTGCTAAGGCGGTGTTTG 59.461 47.619 0.00 0.00 42.25 2.93
181 183 1.810151 GATTGCTAAGGCGGTGTTTGA 59.190 47.619 0.00 0.00 42.25 2.69
182 184 1.904287 TTGCTAAGGCGGTGTTTGAT 58.096 45.000 0.00 0.00 42.25 2.57
183 185 1.904287 TGCTAAGGCGGTGTTTGATT 58.096 45.000 0.00 0.00 42.25 2.57
184 186 1.810151 TGCTAAGGCGGTGTTTGATTC 59.190 47.619 0.00 0.00 42.25 2.52
185 187 2.084546 GCTAAGGCGGTGTTTGATTCT 58.915 47.619 0.00 0.00 0.00 2.40
186 188 2.096013 GCTAAGGCGGTGTTTGATTCTC 59.904 50.000 0.00 0.00 0.00 2.87
187 189 2.568623 AAGGCGGTGTTTGATTCTCT 57.431 45.000 0.00 0.00 0.00 3.10
188 190 3.695830 AAGGCGGTGTTTGATTCTCTA 57.304 42.857 0.00 0.00 0.00 2.43
189 191 3.252974 AGGCGGTGTTTGATTCTCTAG 57.747 47.619 0.00 0.00 0.00 2.43
190 192 2.567615 AGGCGGTGTTTGATTCTCTAGT 59.432 45.455 0.00 0.00 0.00 2.57
191 193 2.930682 GGCGGTGTTTGATTCTCTAGTC 59.069 50.000 0.00 0.00 0.00 2.59
192 194 2.930682 GCGGTGTTTGATTCTCTAGTCC 59.069 50.000 0.00 0.00 0.00 3.85
193 195 3.368531 GCGGTGTTTGATTCTCTAGTCCT 60.369 47.826 0.00 0.00 0.00 3.85
194 196 4.142227 GCGGTGTTTGATTCTCTAGTCCTA 60.142 45.833 0.00 0.00 0.00 2.94
195 197 5.452077 GCGGTGTTTGATTCTCTAGTCCTAT 60.452 44.000 0.00 0.00 0.00 2.57
196 198 5.980116 CGGTGTTTGATTCTCTAGTCCTATG 59.020 44.000 0.00 0.00 0.00 2.23
197 199 6.183360 CGGTGTTTGATTCTCTAGTCCTATGA 60.183 42.308 0.00 0.00 0.00 2.15
198 200 6.981559 GGTGTTTGATTCTCTAGTCCTATGAC 59.018 42.308 0.00 0.00 42.09 3.06
213 215 7.835634 GTCCTATGACTTTTTCTAGTCCTTG 57.164 40.000 0.00 0.00 43.11 3.61
214 216 6.819146 GTCCTATGACTTTTTCTAGTCCTTGG 59.181 42.308 0.00 0.00 43.11 3.61
215 217 6.729100 TCCTATGACTTTTTCTAGTCCTTGGA 59.271 38.462 0.00 0.00 43.11 3.53
216 218 7.236847 TCCTATGACTTTTTCTAGTCCTTGGAA 59.763 37.037 8.76 0.00 43.11 3.53
217 219 7.334671 CCTATGACTTTTTCTAGTCCTTGGAAC 59.665 40.741 0.00 0.00 43.11 3.62
218 220 6.248569 TGACTTTTTCTAGTCCTTGGAACT 57.751 37.500 0.00 0.00 43.11 3.01
219 221 7.369551 TGACTTTTTCTAGTCCTTGGAACTA 57.630 36.000 0.00 0.00 43.11 2.24
220 222 7.442656 TGACTTTTTCTAGTCCTTGGAACTAG 58.557 38.462 14.50 14.50 44.97 2.57
221 223 7.070821 TGACTTTTTCTAGTCCTTGGAACTAGT 59.929 37.037 17.47 0.00 44.29 2.57
222 224 7.443477 ACTTTTTCTAGTCCTTGGAACTAGTC 58.557 38.462 17.47 0.00 44.29 2.59
223 225 7.290481 ACTTTTTCTAGTCCTTGGAACTAGTCT 59.710 37.037 17.47 0.00 44.29 3.24
224 226 7.613551 TTTTCTAGTCCTTGGAACTAGTCTT 57.386 36.000 17.47 0.00 44.29 3.01
225 227 7.613551 TTTCTAGTCCTTGGAACTAGTCTTT 57.386 36.000 17.47 0.00 44.29 2.52
226 228 6.591750 TCTAGTCCTTGGAACTAGTCTTTG 57.408 41.667 17.47 0.00 44.29 2.77
227 229 4.625607 AGTCCTTGGAACTAGTCTTTGG 57.374 45.455 0.00 0.00 0.00 3.28
228 230 4.232091 AGTCCTTGGAACTAGTCTTTGGA 58.768 43.478 0.00 0.00 0.00 3.53
229 231 4.658901 AGTCCTTGGAACTAGTCTTTGGAA 59.341 41.667 0.00 0.00 0.00 3.53
230 232 4.755629 GTCCTTGGAACTAGTCTTTGGAAC 59.244 45.833 0.00 0.00 0.00 3.62
231 233 4.658901 TCCTTGGAACTAGTCTTTGGAACT 59.341 41.667 0.00 0.00 0.00 3.01
232 234 5.132144 TCCTTGGAACTAGTCTTTGGAACTT 59.868 40.000 0.00 0.00 0.00 2.66
233 235 5.828328 CCTTGGAACTAGTCTTTGGAACTTT 59.172 40.000 0.00 0.00 0.00 2.66
234 236 6.321435 CCTTGGAACTAGTCTTTGGAACTTTT 59.679 38.462 0.00 0.00 0.00 2.27
235 237 7.147897 CCTTGGAACTAGTCTTTGGAACTTTTT 60.148 37.037 0.00 0.00 0.00 1.94
236 238 8.810990 TTGGAACTAGTCTTTGGAACTTTTTA 57.189 30.769 0.00 0.00 0.00 1.52
237 239 8.810990 TGGAACTAGTCTTTGGAACTTTTTAA 57.189 30.769 0.00 0.00 0.00 1.52
238 240 9.245481 TGGAACTAGTCTTTGGAACTTTTTAAA 57.755 29.630 0.00 0.00 0.00 1.52
259 261 5.921962 AAAAAGACTTTCAAGAAGGTGCT 57.078 34.783 0.00 0.00 30.37 4.40
260 262 5.921962 AAAAGACTTTCAAGAAGGTGCTT 57.078 34.783 0.00 3.87 30.37 3.91
261 263 7.404671 AAAAAGACTTTCAAGAAGGTGCTTA 57.595 32.000 0.00 0.00 30.37 3.09
262 264 7.588497 AAAAGACTTTCAAGAAGGTGCTTAT 57.412 32.000 0.00 0.00 30.37 1.73
263 265 8.691661 AAAAGACTTTCAAGAAGGTGCTTATA 57.308 30.769 0.00 0.00 30.37 0.98
264 266 8.691661 AAAGACTTTCAAGAAGGTGCTTATAA 57.308 30.769 2.10 0.00 30.37 0.98
265 267 7.913674 AGACTTTCAAGAAGGTGCTTATAAG 57.086 36.000 8.20 8.20 30.37 1.73
266 268 6.881602 AGACTTTCAAGAAGGTGCTTATAAGG 59.118 38.462 14.28 0.00 30.37 2.69
267 269 6.779860 ACTTTCAAGAAGGTGCTTATAAGGA 58.220 36.000 14.28 8.68 0.00 3.36
268 270 6.655425 ACTTTCAAGAAGGTGCTTATAAGGAC 59.345 38.462 24.52 24.52 45.39 3.85
269 271 6.374417 TTCAAGAAGGTGCTTATAAGGACT 57.626 37.500 29.12 15.70 45.42 3.85
270 272 6.374417 TCAAGAAGGTGCTTATAAGGACTT 57.626 37.500 29.12 22.56 45.42 3.01
271 273 6.779860 TCAAGAAGGTGCTTATAAGGACTTT 58.220 36.000 27.06 27.06 46.35 2.66
272 274 7.231467 TCAAGAAGGTGCTTATAAGGACTTTT 58.769 34.615 27.29 23.03 44.37 2.27
273 275 8.380099 TCAAGAAGGTGCTTATAAGGACTTTTA 58.620 33.333 27.29 15.16 44.37 1.52
274 276 8.669243 CAAGAAGGTGCTTATAAGGACTTTTAG 58.331 37.037 27.29 18.70 44.37 1.85
275 277 6.824196 AGAAGGTGCTTATAAGGACTTTTAGC 59.176 38.462 27.29 18.14 44.37 3.09
276 278 6.062258 AGGTGCTTATAAGGACTTTTAGCA 57.938 37.500 29.12 10.76 45.42 3.49
277 279 6.663734 AGGTGCTTATAAGGACTTTTAGCAT 58.336 36.000 29.12 3.91 45.42 3.79
278 280 7.802117 AGGTGCTTATAAGGACTTTTAGCATA 58.198 34.615 29.12 0.00 45.42 3.14
279 281 8.272173 AGGTGCTTATAAGGACTTTTAGCATAA 58.728 33.333 29.12 2.99 45.42 1.90
280 282 8.899771 GGTGCTTATAAGGACTTTTAGCATAAA 58.100 33.333 29.12 0.00 45.42 1.40
281 283 9.937175 GTGCTTATAAGGACTTTTAGCATAAAG 57.063 33.333 25.05 8.51 43.15 1.85
293 295 9.952188 ACTTTTAGCATAAAGTCTCAAAAAGTC 57.048 29.630 9.60 0.00 43.04 3.01
294 296 9.399403 CTTTTAGCATAAAGTCTCAAAAAGTCC 57.601 33.333 3.21 0.00 31.87 3.85
295 297 5.966742 AGCATAAAGTCTCAAAAAGTCCC 57.033 39.130 0.00 0.00 0.00 4.46
296 298 4.767409 AGCATAAAGTCTCAAAAAGTCCCC 59.233 41.667 0.00 0.00 0.00 4.81
297 299 4.767409 GCATAAAGTCTCAAAAAGTCCCCT 59.233 41.667 0.00 0.00 0.00 4.79
298 300 5.335976 GCATAAAGTCTCAAAAAGTCCCCTG 60.336 44.000 0.00 0.00 0.00 4.45
299 301 3.953542 AAGTCTCAAAAAGTCCCCTGT 57.046 42.857 0.00 0.00 0.00 4.00
300 302 3.953542 AGTCTCAAAAAGTCCCCTGTT 57.046 42.857 0.00 0.00 0.00 3.16
301 303 4.251103 AGTCTCAAAAAGTCCCCTGTTT 57.749 40.909 0.00 0.00 0.00 2.83
302 304 3.954258 AGTCTCAAAAAGTCCCCTGTTTG 59.046 43.478 0.00 0.00 44.21 2.93
306 308 5.948742 TCAAAAAGTCCCCTGTTTGATTT 57.051 34.783 4.36 0.00 45.70 2.17
307 309 5.669477 TCAAAAAGTCCCCTGTTTGATTTG 58.331 37.500 4.36 0.00 45.70 2.32
308 310 3.751479 AAAGTCCCCTGTTTGATTTGC 57.249 42.857 0.00 0.00 0.00 3.68
309 311 2.683211 AGTCCCCTGTTTGATTTGCT 57.317 45.000 0.00 0.00 0.00 3.91
310 312 3.806949 AGTCCCCTGTTTGATTTGCTA 57.193 42.857 0.00 0.00 0.00 3.49
311 313 4.112634 AGTCCCCTGTTTGATTTGCTAA 57.887 40.909 0.00 0.00 0.00 3.09
312 314 4.082125 AGTCCCCTGTTTGATTTGCTAAG 58.918 43.478 0.00 0.00 0.00 2.18
313 315 3.193479 GTCCCCTGTTTGATTTGCTAAGG 59.807 47.826 0.00 0.00 0.00 2.69
314 316 3.075283 TCCCCTGTTTGATTTGCTAAGGA 59.925 43.478 0.00 0.00 0.00 3.36
315 317 3.193479 CCCCTGTTTGATTTGCTAAGGAC 59.807 47.826 0.00 0.00 0.00 3.85
316 318 3.193479 CCCTGTTTGATTTGCTAAGGACC 59.807 47.826 0.00 0.00 0.00 4.46
317 319 4.082125 CCTGTTTGATTTGCTAAGGACCT 58.918 43.478 0.00 0.00 0.00 3.85
318 320 4.156739 CCTGTTTGATTTGCTAAGGACCTC 59.843 45.833 0.00 0.00 0.00 3.85
319 321 4.985538 TGTTTGATTTGCTAAGGACCTCT 58.014 39.130 0.00 0.00 0.00 3.69
320 322 5.385198 TGTTTGATTTGCTAAGGACCTCTT 58.615 37.500 0.00 0.00 39.40 2.85
321 323 5.833131 TGTTTGATTTGCTAAGGACCTCTTT 59.167 36.000 0.00 0.00 36.93 2.52
322 324 6.323739 TGTTTGATTTGCTAAGGACCTCTTTT 59.676 34.615 0.00 0.00 36.93 2.27
323 325 6.976934 TTGATTTGCTAAGGACCTCTTTTT 57.023 33.333 0.00 0.00 36.93 1.94
324 326 8.357402 GTTTGATTTGCTAAGGACCTCTTTTTA 58.643 33.333 0.00 0.00 36.93 1.52
325 327 7.687941 TGATTTGCTAAGGACCTCTTTTTAG 57.312 36.000 0.00 0.00 36.93 1.85
326 328 7.231467 TGATTTGCTAAGGACCTCTTTTTAGT 58.769 34.615 0.00 0.00 36.93 2.24
327 329 7.390718 TGATTTGCTAAGGACCTCTTTTTAGTC 59.609 37.037 0.00 0.00 36.93 2.59
333 335 4.094830 GGACCTCTTTTTAGTCCCAACA 57.905 45.455 0.00 0.00 43.60 3.33
334 336 4.663334 GGACCTCTTTTTAGTCCCAACAT 58.337 43.478 0.00 0.00 43.60 2.71
335 337 5.812286 GGACCTCTTTTTAGTCCCAACATA 58.188 41.667 0.00 0.00 43.60 2.29
336 338 6.243148 GGACCTCTTTTTAGTCCCAACATAA 58.757 40.000 0.00 0.00 43.60 1.90
337 339 6.717997 GGACCTCTTTTTAGTCCCAACATAAA 59.282 38.462 0.00 0.00 43.60 1.40
338 340 7.231925 GGACCTCTTTTTAGTCCCAACATAAAA 59.768 37.037 0.00 0.00 43.60 1.52
339 341 8.541899 ACCTCTTTTTAGTCCCAACATAAAAA 57.458 30.769 0.00 0.00 36.52 1.94
358 360 4.983671 AAAAGTCTCTGGAACCAAACAC 57.016 40.909 0.00 0.00 0.00 3.32
359 361 2.640316 AGTCTCTGGAACCAAACACC 57.360 50.000 0.00 0.00 0.00 4.16
360 362 1.143073 AGTCTCTGGAACCAAACACCC 59.857 52.381 0.00 0.00 0.00 4.61
367 369 3.301274 TGGAACCAAACACCCCTAAAAG 58.699 45.455 0.00 0.00 0.00 2.27
369 371 3.572682 GGAACCAAACACCCCTAAAAGAG 59.427 47.826 0.00 0.00 0.00 2.85
374 376 4.762251 CCAAACACCCCTAAAAGAGAAGAG 59.238 45.833 0.00 0.00 0.00 2.85
377 379 3.583526 ACACCCCTAAAAGAGAAGAGGAC 59.416 47.826 0.00 0.00 0.00 3.85
400 402 1.507141 GCTCAACCACCGTGACAAGG 61.507 60.000 5.81 5.81 0.00 3.61
401 403 0.179056 CTCAACCACCGTGACAAGGT 60.179 55.000 7.30 7.30 43.97 3.50
408 410 0.463116 ACCGTGACAAGGTGTGTTCC 60.463 55.000 12.62 0.00 41.96 3.62
417 419 6.430000 GTGACAAGGTGTGTTCCTACATAATT 59.570 38.462 0.00 0.00 41.96 1.40
418 420 6.653320 TGACAAGGTGTGTTCCTACATAATTC 59.347 38.462 0.00 0.00 41.96 2.17
419 421 5.642063 ACAAGGTGTGTTCCTACATAATTCG 59.358 40.000 0.00 0.00 37.01 3.34
431 437 8.554835 TCCTACATAATTCGTCATGTGAAAAA 57.445 30.769 7.12 0.82 36.13 1.94
458 464 2.612972 CCCTTCAGAACTCGCAGCTTAA 60.613 50.000 0.00 0.00 0.00 1.85
469 475 2.095263 TCGCAGCTTAATTTTCAGGCAC 60.095 45.455 0.00 0.00 0.00 5.01
471 477 3.248266 GCAGCTTAATTTTCAGGCACAG 58.752 45.455 0.00 0.00 0.00 3.66
472 478 3.248266 CAGCTTAATTTTCAGGCACAGC 58.752 45.455 0.00 0.00 0.00 4.40
482 488 3.512516 GGCACAGCCGCATTCTCC 61.513 66.667 0.00 0.00 39.62 3.71
483 489 3.869272 GCACAGCCGCATTCTCCG 61.869 66.667 0.00 0.00 0.00 4.63
496 502 3.546218 GCATTCTCCGATAAACGAAAGCC 60.546 47.826 0.00 0.00 45.77 4.35
501 507 1.261989 CGATAAACGAAAGCCGACGA 58.738 50.000 0.00 0.00 45.77 4.20
502 508 1.007729 CGATAAACGAAAGCCGACGAC 60.008 52.381 0.00 0.00 45.77 4.34
515 521 3.763127 GACGACGGACGGCCCATAC 62.763 68.421 0.00 0.00 45.37 2.39
519 525 1.458020 ACGGACGGCCCATACCATA 60.458 57.895 0.00 0.00 34.14 2.74
523 548 0.690762 GACGGCCCATACCATACCAT 59.309 55.000 0.00 0.00 0.00 3.55
526 551 1.610624 CGGCCCATACCATACCATCAC 60.611 57.143 0.00 0.00 0.00 3.06
530 555 3.476552 CCCATACCATACCATCACACAC 58.523 50.000 0.00 0.00 0.00 3.82
531 556 3.476552 CCATACCATACCATCACACACC 58.523 50.000 0.00 0.00 0.00 4.16
534 559 1.922447 ACCATACCATCACACACCCAT 59.078 47.619 0.00 0.00 0.00 4.00
537 562 2.971660 TACCATCACACACCCATACG 57.028 50.000 0.00 0.00 0.00 3.06
544 569 0.036388 ACACACCCATACGCTTCCAG 60.036 55.000 0.00 0.00 0.00 3.86
545 570 0.249120 CACACCCATACGCTTCCAGA 59.751 55.000 0.00 0.00 0.00 3.86
546 571 0.981183 ACACCCATACGCTTCCAGAA 59.019 50.000 0.00 0.00 0.00 3.02
571 638 6.095160 AGCAAGAGTATACACTACACTACACC 59.905 42.308 5.50 0.00 34.21 4.16
593 692 1.374252 GTGACATCACGCCGGACTT 60.374 57.895 5.05 0.00 37.10 3.01
604 703 2.430244 CGGACTTCGGTCACCACG 60.430 66.667 0.00 0.00 46.11 4.94
605 704 2.732658 GGACTTCGGTCACCACGT 59.267 61.111 0.00 0.00 46.11 4.49
612 711 4.712425 GGTCACCACGTCCGTCCG 62.712 72.222 0.00 0.00 0.00 4.79
615 714 4.712425 CACCACGTCCGTCCGTCC 62.712 72.222 0.00 0.00 39.45 4.79
620 734 3.730761 CGTCCGTCCGTCCGTCTT 61.731 66.667 0.00 0.00 0.00 3.01
624 738 1.174712 TCCGTCCGTCCGTCTTTCTT 61.175 55.000 0.00 0.00 0.00 2.52
626 740 0.782384 CGTCCGTCCGTCTTTCTTTG 59.218 55.000 0.00 0.00 0.00 2.77
662 777 1.535437 CCGACGAGGAAAAGATACCGG 60.535 57.143 0.00 0.00 45.00 5.28
723 838 4.065281 GCCAGCCACGTCGTACCT 62.065 66.667 0.00 0.00 0.00 3.08
726 841 4.065281 AGCCACGTCGTACCTGCC 62.065 66.667 0.00 0.00 0.00 4.85
836 954 3.090219 GCGCCTATATAGGGCCCCG 62.090 68.421 26.76 21.67 46.24 5.73
837 955 2.908796 GCCTATATAGGGCCCCGC 59.091 66.667 26.76 10.18 43.82 6.13
882 1000 2.271800 CCGTTTTAGCTGTAGCAGGAG 58.728 52.381 6.65 0.00 45.16 3.69
887 1005 0.927029 TAGCTGTAGCAGGAGGGAGA 59.073 55.000 6.65 0.00 45.16 3.71
891 1009 2.092699 GCTGTAGCAGGAGGGAGAAAAT 60.093 50.000 0.00 0.00 41.59 1.82
893 1011 4.195416 CTGTAGCAGGAGGGAGAAAATTC 58.805 47.826 0.00 0.00 0.00 2.17
894 1012 2.816777 AGCAGGAGGGAGAAAATTCC 57.183 50.000 0.00 0.00 36.46 3.01
895 1013 1.065126 AGCAGGAGGGAGAAAATTCCG 60.065 52.381 0.00 0.00 38.17 4.30
896 1014 2.019156 GCAGGAGGGAGAAAATTCCGG 61.019 57.143 0.00 0.00 38.17 5.14
897 1015 0.256177 AGGAGGGAGAAAATTCCGGC 59.744 55.000 0.00 0.00 38.17 6.13
961 1090 3.107661 CCCCCGTTCGTTCGTTCG 61.108 66.667 0.00 0.00 0.00 3.95
962 1091 2.355009 CCCCGTTCGTTCGTTCGT 60.355 61.111 2.67 0.00 0.00 3.85
963 1092 2.367344 CCCCGTTCGTTCGTTCGTC 61.367 63.158 2.67 0.00 0.00 4.20
964 1093 2.367344 CCCGTTCGTTCGTTCGTCC 61.367 63.158 2.67 0.00 0.00 4.79
965 1094 2.700347 CCGTTCGTTCGTTCGTCCG 61.700 63.158 2.67 5.83 0.00 4.79
966 1095 2.005537 CGTTCGTTCGTTCGTCCGT 61.006 57.895 2.67 0.00 0.00 4.69
967 1096 1.531522 CGTTCGTTCGTTCGTCCGTT 61.532 55.000 2.67 0.00 0.00 4.44
968 1097 0.157475 GTTCGTTCGTTCGTCCGTTC 59.843 55.000 2.67 0.00 0.00 3.95
969 1098 0.934436 TTCGTTCGTTCGTCCGTTCC 60.934 55.000 2.67 0.00 0.00 3.62
970 1099 1.370900 CGTTCGTTCGTCCGTTCCT 60.371 57.895 0.00 0.00 0.00 3.36
971 1100 0.936297 CGTTCGTTCGTCCGTTCCTT 60.936 55.000 0.00 0.00 0.00 3.36
972 1101 0.780596 GTTCGTTCGTCCGTTCCTTC 59.219 55.000 0.00 0.00 0.00 3.46
1106 1255 2.223923 TGGTTCTGAATTTGGGCGTTTG 60.224 45.455 0.00 0.00 0.00 2.93
1107 1256 2.223947 GGTTCTGAATTTGGGCGTTTGT 60.224 45.455 0.00 0.00 0.00 2.83
1400 1557 3.227250 CCCACCGTAGCTTAGGGG 58.773 66.667 11.22 7.19 38.02 4.79
1547 1711 1.641577 CTTCCCGTTCCATCGAGAAC 58.358 55.000 7.33 7.33 42.25 3.01
1629 1798 0.173708 GTCGAGAATTCTCCCGTGCT 59.826 55.000 26.08 0.00 39.79 4.40
1630 1799 0.895530 TCGAGAATTCTCCCGTGCTT 59.104 50.000 26.08 0.00 39.79 3.91
1735 1904 1.517242 GGGAATCACATGCCTCGATC 58.483 55.000 0.00 0.00 0.00 3.69
1748 1917 3.625313 TGCCTCGATCGCATTTCATTTTA 59.375 39.130 11.09 0.00 0.00 1.52
1756 1926 7.044880 CGATCGCATTTCATTTTATTTTGTCG 58.955 34.615 0.26 0.00 0.00 4.35
1797 1967 1.885233 TCGTCAATTTCAAGCATGGCA 59.115 42.857 0.00 0.00 0.00 4.92
1800 1970 2.991190 GTCAATTTCAAGCATGGCACTG 59.009 45.455 0.00 0.00 0.00 3.66
1804 1978 0.961019 TTCAAGCATGGCACTGTTCC 59.039 50.000 0.00 0.00 0.00 3.62
1808 1982 1.081242 GCATGGCACTGTTCCAACG 60.081 57.895 2.67 0.00 37.13 4.10
1816 1990 0.951558 ACTGTTCCAACGATGTTGCC 59.048 50.000 4.18 0.00 0.00 4.52
1817 1991 1.238439 CTGTTCCAACGATGTTGCCT 58.762 50.000 4.18 0.00 0.00 4.75
1819 1993 1.234821 GTTCCAACGATGTTGCCTGA 58.765 50.000 4.18 0.00 0.00 3.86
1822 1996 1.167851 CCAACGATGTTGCCTGATGT 58.832 50.000 4.18 0.00 0.00 3.06
1829 2003 3.119884 CGATGTTGCCTGATGTTGCTAAA 60.120 43.478 0.00 0.00 0.00 1.85
1831 2005 4.870123 TGTTGCCTGATGTTGCTAAAAT 57.130 36.364 0.00 0.00 0.00 1.82
1832 2006 5.973899 TGTTGCCTGATGTTGCTAAAATA 57.026 34.783 0.00 0.00 0.00 1.40
1833 2007 6.338214 TGTTGCCTGATGTTGCTAAAATAA 57.662 33.333 0.00 0.00 0.00 1.40
1834 2008 6.389091 TGTTGCCTGATGTTGCTAAAATAAG 58.611 36.000 0.00 0.00 0.00 1.73
1835 2009 6.208402 TGTTGCCTGATGTTGCTAAAATAAGA 59.792 34.615 0.00 0.00 0.00 2.10
1836 2010 7.093814 TGTTGCCTGATGTTGCTAAAATAAGAT 60.094 33.333 0.00 0.00 0.00 2.40
1970 2145 2.381941 GGAGCTGGCCAGGGAGATT 61.382 63.158 33.46 0.78 0.00 2.40
2084 2259 4.410400 CCGGTGGCCAAGGACCTC 62.410 72.222 20.78 0.47 0.00 3.85
2370 2545 0.842030 ACCTGATGCCCAGACTTCCA 60.842 55.000 4.93 0.00 45.78 3.53
2382 2557 2.510238 CTTCCAAGGAGCGCTCGG 60.510 66.667 29.81 24.64 0.00 4.63
2432 2610 2.676822 ACTTCCGAGGAGCGCTCA 60.677 61.111 36.27 15.10 39.11 4.26
2433 2611 2.202676 CTTCCGAGGAGCGCTCAC 60.203 66.667 36.27 26.92 39.11 3.51
2462 2640 0.107456 AGCCTATGGGACTTGATGCG 59.893 55.000 0.00 0.00 33.58 4.73
2469 2647 2.456119 GGACTTGATGCGCAGACCG 61.456 63.158 18.32 7.13 40.75 4.79
2486 2667 2.826738 GCGGAGGAGAGCTCGTCT 60.827 66.667 16.79 9.82 42.34 4.18
2567 2748 0.107508 CTGTGGAATCTGACGCCCAT 60.108 55.000 0.00 0.00 0.00 4.00
2568 2749 0.392863 TGTGGAATCTGACGCCCATG 60.393 55.000 0.00 0.00 0.00 3.66
2618 2799 2.173356 CAAGACTATGGATCTTGGGGCA 59.827 50.000 6.81 0.00 46.21 5.36
2769 3092 1.243902 TGCAATTGGGTTCGTCCTTC 58.756 50.000 7.72 0.00 36.25 3.46
2775 3098 2.241281 TGGGTTCGTCCTTCTATGGA 57.759 50.000 0.30 0.00 36.25 3.41
2781 3104 1.001706 TCGTCCTTCTATGGATTCGCG 60.002 52.381 0.00 0.00 38.52 5.87
2782 3105 1.001706 CGTCCTTCTATGGATTCGCGA 60.002 52.381 3.71 3.71 38.52 5.87
2783 3106 2.667137 GTCCTTCTATGGATTCGCGAG 58.333 52.381 9.59 0.00 38.52 5.03
2784 3107 2.034812 GTCCTTCTATGGATTCGCGAGT 59.965 50.000 9.59 6.29 38.52 4.18
2858 3395 4.201980 CGTCGTTTTCCTTTTCTTCCCTTT 60.202 41.667 0.00 0.00 0.00 3.11
3035 3576 0.251916 TTTTCCTGCGATGGACGGAT 59.748 50.000 0.00 0.00 42.12 4.18
3038 3579 2.501128 CTGCGATGGACGGATGGT 59.499 61.111 0.00 0.00 42.12 3.55
3085 3679 2.819550 CCCCGAACCCGATCGAAT 59.180 61.111 18.66 0.08 45.48 3.34
3118 3712 1.447838 CTGCATTACTCCCACGCGT 60.448 57.895 5.58 5.58 0.00 6.01
3191 3785 2.180017 CAGTTGCGCTGCCCATTC 59.820 61.111 9.73 0.00 38.52 2.67
3387 3981 0.462937 ACACGCCAGCGCCAATTATA 60.463 50.000 12.72 0.00 44.19 0.98
3389 3983 2.073056 CACGCCAGCGCCAATTATATA 58.927 47.619 12.72 0.00 44.19 0.86
3390 3984 2.677836 CACGCCAGCGCCAATTATATAT 59.322 45.455 12.72 0.00 44.19 0.86
3391 3985 2.936498 ACGCCAGCGCCAATTATATATC 59.064 45.455 12.72 0.00 44.19 1.63
3392 3986 2.935849 CGCCAGCGCCAATTATATATCA 59.064 45.455 2.29 0.00 0.00 2.15
3410 4004 3.967335 CCTCTCCGCGACCGATCC 61.967 72.222 8.23 0.00 36.29 3.36
3558 4719 1.583495 GCCTAGGACAAAACACCGGC 61.583 60.000 14.75 0.00 0.00 6.13
3621 4785 0.037697 TGACTGTGAAATCGTCCCGG 60.038 55.000 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.179265 GTGTGATGCGTCGGGTCG 61.179 66.667 0.58 0.00 0.00 4.79
96 97 0.667184 GGCCGAACGTACGAAGGAAA 60.667 55.000 24.41 0.00 35.09 3.13
114 116 2.351738 GGAAATCAAACGCTTCCACAGG 60.352 50.000 0.00 0.00 38.80 4.00
117 119 2.351738 CCAGGAAATCAAACGCTTCCAC 60.352 50.000 3.12 0.00 41.00 4.02
119 121 1.402852 GCCAGGAAATCAAACGCTTCC 60.403 52.381 0.00 0.00 39.18 3.46
122 124 0.598065 GTGCCAGGAAATCAAACGCT 59.402 50.000 0.00 0.00 0.00 5.07
136 138 3.053291 GGTTCATTCCGCGTGCCA 61.053 61.111 4.92 0.00 0.00 4.92
144 146 3.673323 GCAATCAAAGGACGGTTCATTCC 60.673 47.826 0.00 0.00 0.00 3.01
145 147 3.191371 AGCAATCAAAGGACGGTTCATTC 59.809 43.478 0.00 0.00 0.00 2.67
146 148 3.157087 AGCAATCAAAGGACGGTTCATT 58.843 40.909 0.00 0.00 0.00 2.57
147 149 2.795329 AGCAATCAAAGGACGGTTCAT 58.205 42.857 0.00 0.00 0.00 2.57
148 150 2.270352 AGCAATCAAAGGACGGTTCA 57.730 45.000 0.00 0.00 0.00 3.18
149 151 3.127030 CCTTAGCAATCAAAGGACGGTTC 59.873 47.826 0.00 0.00 34.39 3.62
150 152 3.081804 CCTTAGCAATCAAAGGACGGTT 58.918 45.455 0.00 0.00 34.39 4.44
151 153 2.711542 CCTTAGCAATCAAAGGACGGT 58.288 47.619 0.00 0.00 34.39 4.83
152 154 1.401905 GCCTTAGCAATCAAAGGACGG 59.598 52.381 5.31 0.00 39.53 4.79
153 155 1.062587 CGCCTTAGCAATCAAAGGACG 59.937 52.381 5.31 4.81 39.83 4.79
154 156 1.401905 CCGCCTTAGCAATCAAAGGAC 59.598 52.381 5.31 0.00 39.83 3.85
155 157 1.004277 ACCGCCTTAGCAATCAAAGGA 59.996 47.619 5.31 0.00 39.83 3.36
156 158 1.133025 CACCGCCTTAGCAATCAAAGG 59.867 52.381 0.00 0.00 39.83 3.11
157 159 1.812571 ACACCGCCTTAGCAATCAAAG 59.187 47.619 0.00 0.00 39.83 2.77
158 160 1.904287 ACACCGCCTTAGCAATCAAA 58.096 45.000 0.00 0.00 39.83 2.69
159 161 1.904287 AACACCGCCTTAGCAATCAA 58.096 45.000 0.00 0.00 39.83 2.57
160 162 1.539388 CAAACACCGCCTTAGCAATCA 59.461 47.619 0.00 0.00 39.83 2.57
161 163 1.810151 TCAAACACCGCCTTAGCAATC 59.190 47.619 0.00 0.00 39.83 2.67
162 164 1.904287 TCAAACACCGCCTTAGCAAT 58.096 45.000 0.00 0.00 39.83 3.56
163 165 1.904287 ATCAAACACCGCCTTAGCAA 58.096 45.000 0.00 0.00 39.83 3.91
164 166 1.810151 GAATCAAACACCGCCTTAGCA 59.190 47.619 0.00 0.00 39.83 3.49
165 167 2.084546 AGAATCAAACACCGCCTTAGC 58.915 47.619 0.00 0.00 0.00 3.09
166 168 3.600388 AGAGAATCAAACACCGCCTTAG 58.400 45.455 0.00 0.00 37.82 2.18
167 169 3.695830 AGAGAATCAAACACCGCCTTA 57.304 42.857 0.00 0.00 37.82 2.69
168 170 2.568623 AGAGAATCAAACACCGCCTT 57.431 45.000 0.00 0.00 37.82 4.35
169 171 2.567615 ACTAGAGAATCAAACACCGCCT 59.432 45.455 0.00 0.00 37.82 5.52
170 172 2.930682 GACTAGAGAATCAAACACCGCC 59.069 50.000 0.00 0.00 37.82 6.13
171 173 2.930682 GGACTAGAGAATCAAACACCGC 59.069 50.000 0.00 0.00 37.82 5.68
172 174 4.457834 AGGACTAGAGAATCAAACACCG 57.542 45.455 0.00 0.00 37.82 4.94
173 175 6.981559 GTCATAGGACTAGAGAATCAAACACC 59.018 42.308 0.00 0.00 40.99 4.16
174 176 7.995463 GTCATAGGACTAGAGAATCAAACAC 57.005 40.000 0.00 0.00 40.99 3.32
189 191 6.819146 CCAAGGACTAGAAAAAGTCATAGGAC 59.181 42.308 0.00 0.00 46.40 3.85
190 192 6.729100 TCCAAGGACTAGAAAAAGTCATAGGA 59.271 38.462 0.00 6.44 46.40 2.94
191 193 6.947464 TCCAAGGACTAGAAAAAGTCATAGG 58.053 40.000 0.00 4.51 46.40 2.57
192 194 8.097662 AGTTCCAAGGACTAGAAAAAGTCATAG 58.902 37.037 0.00 0.00 46.40 2.23
193 195 7.974504 AGTTCCAAGGACTAGAAAAAGTCATA 58.025 34.615 0.00 0.00 46.40 2.15
194 196 6.842676 AGTTCCAAGGACTAGAAAAAGTCAT 58.157 36.000 0.00 0.00 46.40 3.06
195 197 6.248569 AGTTCCAAGGACTAGAAAAAGTCA 57.751 37.500 0.00 0.00 46.40 3.41
196 198 7.443477 ACTAGTTCCAAGGACTAGAAAAAGTC 58.557 38.462 21.77 0.00 44.31 3.01
197 199 7.290481 AGACTAGTTCCAAGGACTAGAAAAAGT 59.710 37.037 21.77 9.34 37.48 2.66
198 200 7.672240 AGACTAGTTCCAAGGACTAGAAAAAG 58.328 38.462 21.77 7.19 37.48 2.27
199 201 7.613551 AGACTAGTTCCAAGGACTAGAAAAA 57.386 36.000 21.77 0.00 37.48 1.94
200 202 7.613551 AAGACTAGTTCCAAGGACTAGAAAA 57.386 36.000 21.77 0.00 37.48 2.29
201 203 7.442656 CAAAGACTAGTTCCAAGGACTAGAAA 58.557 38.462 21.77 0.00 37.48 2.52
202 204 6.014499 CCAAAGACTAGTTCCAAGGACTAGAA 60.014 42.308 21.77 0.00 37.48 2.10
203 205 5.480772 CCAAAGACTAGTTCCAAGGACTAGA 59.519 44.000 21.77 0.00 37.48 2.43
204 206 5.480772 TCCAAAGACTAGTTCCAAGGACTAG 59.519 44.000 17.01 17.01 39.32 2.57
205 207 5.399991 TCCAAAGACTAGTTCCAAGGACTA 58.600 41.667 0.00 0.00 0.00 2.59
206 208 4.232091 TCCAAAGACTAGTTCCAAGGACT 58.768 43.478 0.00 0.00 0.00 3.85
207 209 4.618920 TCCAAAGACTAGTTCCAAGGAC 57.381 45.455 0.00 0.00 0.00 3.85
208 210 4.658901 AGTTCCAAAGACTAGTTCCAAGGA 59.341 41.667 0.00 0.00 0.00 3.36
209 211 4.974399 AGTTCCAAAGACTAGTTCCAAGG 58.026 43.478 0.00 0.00 0.00 3.61
210 212 6.944234 AAAGTTCCAAAGACTAGTTCCAAG 57.056 37.500 0.00 0.00 0.00 3.61
211 213 7.712204 AAAAAGTTCCAAAGACTAGTTCCAA 57.288 32.000 0.00 0.00 0.00 3.53
212 214 8.810990 TTAAAAAGTTCCAAAGACTAGTTCCA 57.189 30.769 0.00 0.00 0.00 3.53
237 239 5.921962 AGCACCTTCTTGAAAGTCTTTTT 57.078 34.783 0.00 0.00 0.00 1.94
238 240 5.921962 AAGCACCTTCTTGAAAGTCTTTT 57.078 34.783 0.00 0.00 0.00 2.27
239 241 8.691661 TTATAAGCACCTTCTTGAAAGTCTTT 57.308 30.769 0.00 0.00 0.00 2.52
240 242 7.391833 CCTTATAAGCACCTTCTTGAAAGTCTT 59.608 37.037 6.99 0.00 0.00 3.01
241 243 6.881602 CCTTATAAGCACCTTCTTGAAAGTCT 59.118 38.462 6.99 0.00 0.00 3.24
242 244 6.879458 TCCTTATAAGCACCTTCTTGAAAGTC 59.121 38.462 6.99 0.00 0.00 3.01
243 245 6.655425 GTCCTTATAAGCACCTTCTTGAAAGT 59.345 38.462 6.99 0.00 0.00 2.66
244 246 6.881602 AGTCCTTATAAGCACCTTCTTGAAAG 59.118 38.462 6.99 0.00 0.00 2.62
245 247 6.779860 AGTCCTTATAAGCACCTTCTTGAAA 58.220 36.000 6.99 0.00 0.00 2.69
246 248 6.374417 AGTCCTTATAAGCACCTTCTTGAA 57.626 37.500 6.99 0.00 0.00 2.69
247 249 6.374417 AAGTCCTTATAAGCACCTTCTTGA 57.626 37.500 6.99 0.00 0.00 3.02
248 250 7.454260 AAAAGTCCTTATAAGCACCTTCTTG 57.546 36.000 6.99 0.00 0.00 3.02
249 251 7.337184 GCTAAAAGTCCTTATAAGCACCTTCTT 59.663 37.037 6.99 7.74 0.00 2.52
250 252 6.824196 GCTAAAAGTCCTTATAAGCACCTTCT 59.176 38.462 6.99 0.00 0.00 2.85
251 253 6.598064 TGCTAAAAGTCCTTATAAGCACCTTC 59.402 38.462 6.99 0.00 33.84 3.46
252 254 6.481643 TGCTAAAAGTCCTTATAAGCACCTT 58.518 36.000 6.99 5.53 33.84 3.50
253 255 6.062258 TGCTAAAAGTCCTTATAAGCACCT 57.938 37.500 6.99 0.00 33.84 4.00
254 256 6.944234 ATGCTAAAAGTCCTTATAAGCACC 57.056 37.500 6.99 0.00 40.89 5.01
255 257 9.937175 CTTTATGCTAAAAGTCCTTATAAGCAC 57.063 33.333 6.99 2.36 40.89 4.40
256 258 9.681062 ACTTTATGCTAAAAGTCCTTATAAGCA 57.319 29.630 6.99 11.09 44.43 3.91
268 270 9.399403 GGACTTTTTGAGACTTTATGCTAAAAG 57.601 33.333 9.07 9.07 41.35 2.27
269 271 8.357402 GGGACTTTTTGAGACTTTATGCTAAAA 58.643 33.333 0.00 0.00 0.00 1.52
270 272 7.039993 GGGGACTTTTTGAGACTTTATGCTAAA 60.040 37.037 0.00 0.00 0.00 1.85
271 273 6.433093 GGGGACTTTTTGAGACTTTATGCTAA 59.567 38.462 0.00 0.00 0.00 3.09
272 274 5.944007 GGGGACTTTTTGAGACTTTATGCTA 59.056 40.000 0.00 0.00 0.00 3.49
273 275 4.767409 GGGGACTTTTTGAGACTTTATGCT 59.233 41.667 0.00 0.00 0.00 3.79
274 276 4.767409 AGGGGACTTTTTGAGACTTTATGC 59.233 41.667 0.00 0.00 37.44 3.14
275 277 5.770162 ACAGGGGACTTTTTGAGACTTTATG 59.230 40.000 0.00 0.00 40.21 1.90
276 278 5.953571 ACAGGGGACTTTTTGAGACTTTAT 58.046 37.500 0.00 0.00 40.21 1.40
277 279 5.382664 ACAGGGGACTTTTTGAGACTTTA 57.617 39.130 0.00 0.00 40.21 1.85
278 280 4.251103 ACAGGGGACTTTTTGAGACTTT 57.749 40.909 0.00 0.00 40.21 2.66
279 281 3.953542 ACAGGGGACTTTTTGAGACTT 57.046 42.857 0.00 0.00 40.21 3.01
280 282 3.953542 AACAGGGGACTTTTTGAGACT 57.046 42.857 0.00 0.00 40.21 3.24
286 288 4.164030 AGCAAATCAAACAGGGGACTTTTT 59.836 37.500 0.00 0.00 40.87 1.94
287 289 3.711190 AGCAAATCAAACAGGGGACTTTT 59.289 39.130 0.00 0.00 40.21 2.27
288 290 3.308401 AGCAAATCAAACAGGGGACTTT 58.692 40.909 0.00 0.00 40.21 2.66
289 291 2.962859 AGCAAATCAAACAGGGGACTT 58.037 42.857 0.00 0.00 40.21 3.01
290 292 2.683211 AGCAAATCAAACAGGGGACT 57.317 45.000 0.00 0.00 46.44 3.85
291 293 3.193479 CCTTAGCAAATCAAACAGGGGAC 59.807 47.826 0.00 0.00 0.00 4.46
292 294 3.075283 TCCTTAGCAAATCAAACAGGGGA 59.925 43.478 0.00 0.00 0.00 4.81
293 295 3.193479 GTCCTTAGCAAATCAAACAGGGG 59.807 47.826 0.00 0.00 0.00 4.79
294 296 3.193479 GGTCCTTAGCAAATCAAACAGGG 59.807 47.826 0.00 0.00 0.00 4.45
295 297 4.082125 AGGTCCTTAGCAAATCAAACAGG 58.918 43.478 0.00 0.00 0.00 4.00
296 298 5.006386 AGAGGTCCTTAGCAAATCAAACAG 58.994 41.667 0.00 0.00 0.00 3.16
297 299 4.985538 AGAGGTCCTTAGCAAATCAAACA 58.014 39.130 0.00 0.00 0.00 2.83
298 300 5.966742 AAGAGGTCCTTAGCAAATCAAAC 57.033 39.130 0.00 0.00 32.24 2.93
299 301 6.976934 AAAAGAGGTCCTTAGCAAATCAAA 57.023 33.333 0.00 0.00 34.00 2.69
300 302 6.976934 AAAAAGAGGTCCTTAGCAAATCAA 57.023 33.333 0.00 0.00 34.00 2.57
301 303 7.231467 ACTAAAAAGAGGTCCTTAGCAAATCA 58.769 34.615 0.00 0.00 34.00 2.57
302 304 7.148222 GGACTAAAAAGAGGTCCTTAGCAAATC 60.148 40.741 0.00 0.00 44.21 2.17
303 305 6.659668 GGACTAAAAAGAGGTCCTTAGCAAAT 59.340 38.462 0.00 0.00 44.21 2.32
304 306 6.002082 GGACTAAAAAGAGGTCCTTAGCAAA 58.998 40.000 0.00 0.00 44.21 3.68
305 307 5.514310 GGGACTAAAAAGAGGTCCTTAGCAA 60.514 44.000 10.53 0.00 46.11 3.91
306 308 4.019591 GGGACTAAAAAGAGGTCCTTAGCA 60.020 45.833 10.53 0.00 46.11 3.49
307 309 4.019591 TGGGACTAAAAAGAGGTCCTTAGC 60.020 45.833 10.53 0.00 46.11 3.09
308 310 5.757099 TGGGACTAAAAAGAGGTCCTTAG 57.243 43.478 10.53 0.00 46.11 2.18
309 311 5.370289 TGTTGGGACTAAAAAGAGGTCCTTA 59.630 40.000 10.53 0.00 46.11 2.69
310 312 4.167307 TGTTGGGACTAAAAAGAGGTCCTT 59.833 41.667 10.53 0.00 46.11 3.36
311 313 3.720002 TGTTGGGACTAAAAAGAGGTCCT 59.280 43.478 10.53 0.00 46.11 3.85
312 314 4.094830 TGTTGGGACTAAAAAGAGGTCC 57.905 45.455 0.00 0.00 46.14 4.46
313 315 7.754851 TTTATGTTGGGACTAAAAAGAGGTC 57.245 36.000 0.00 0.00 0.00 3.85
314 316 8.541899 TTTTTATGTTGGGACTAAAAAGAGGT 57.458 30.769 0.00 0.00 32.36 3.85
336 338 4.159693 GGTGTTTGGTTCCAGAGACTTTTT 59.840 41.667 8.93 0.00 0.00 1.94
337 339 3.699538 GGTGTTTGGTTCCAGAGACTTTT 59.300 43.478 8.93 0.00 0.00 2.27
338 340 3.288092 GGTGTTTGGTTCCAGAGACTTT 58.712 45.455 8.93 0.00 0.00 2.66
339 341 2.422945 GGGTGTTTGGTTCCAGAGACTT 60.423 50.000 8.93 0.00 0.00 3.01
340 342 1.143073 GGGTGTTTGGTTCCAGAGACT 59.857 52.381 8.93 0.00 0.00 3.24
341 343 1.605753 GGGTGTTTGGTTCCAGAGAC 58.394 55.000 1.90 1.90 0.00 3.36
342 344 0.476771 GGGGTGTTTGGTTCCAGAGA 59.523 55.000 0.00 0.00 0.00 3.10
343 345 0.478507 AGGGGTGTTTGGTTCCAGAG 59.521 55.000 0.00 0.00 0.00 3.35
344 346 1.822425 TAGGGGTGTTTGGTTCCAGA 58.178 50.000 0.00 0.00 0.00 3.86
345 347 2.668144 TTAGGGGTGTTTGGTTCCAG 57.332 50.000 0.00 0.00 0.00 3.86
346 348 3.052793 TCTTTTAGGGGTGTTTGGTTCCA 60.053 43.478 0.00 0.00 0.00 3.53
347 349 3.568443 TCTTTTAGGGGTGTTTGGTTCC 58.432 45.455 0.00 0.00 0.00 3.62
348 350 4.466827 TCTCTTTTAGGGGTGTTTGGTTC 58.533 43.478 0.00 0.00 0.00 3.62
349 351 4.529716 TCTCTTTTAGGGGTGTTTGGTT 57.470 40.909 0.00 0.00 0.00 3.67
350 352 4.167307 TCTTCTCTTTTAGGGGTGTTTGGT 59.833 41.667 0.00 0.00 0.00 3.67
351 353 4.725490 TCTTCTCTTTTAGGGGTGTTTGG 58.275 43.478 0.00 0.00 0.00 3.28
352 354 4.762251 CCTCTTCTCTTTTAGGGGTGTTTG 59.238 45.833 0.00 0.00 0.00 2.93
353 355 4.663592 TCCTCTTCTCTTTTAGGGGTGTTT 59.336 41.667 0.00 0.00 0.00 2.83
354 356 4.041815 GTCCTCTTCTCTTTTAGGGGTGTT 59.958 45.833 0.00 0.00 0.00 3.32
355 357 3.583526 GTCCTCTTCTCTTTTAGGGGTGT 59.416 47.826 0.00 0.00 0.00 4.16
356 358 3.368531 CGTCCTCTTCTCTTTTAGGGGTG 60.369 52.174 0.00 0.00 0.00 4.61
357 359 2.832733 CGTCCTCTTCTCTTTTAGGGGT 59.167 50.000 0.00 0.00 0.00 4.95
358 360 2.418884 GCGTCCTCTTCTCTTTTAGGGG 60.419 54.545 0.00 0.00 0.00 4.79
359 361 2.498078 AGCGTCCTCTTCTCTTTTAGGG 59.502 50.000 0.00 0.00 0.00 3.53
360 362 3.516615 CAGCGTCCTCTTCTCTTTTAGG 58.483 50.000 0.00 0.00 0.00 2.69
367 369 0.244994 TTGAGCAGCGTCCTCTTCTC 59.755 55.000 0.00 0.00 0.00 2.87
369 371 1.016653 GGTTGAGCAGCGTCCTCTTC 61.017 60.000 0.00 0.00 0.00 2.87
374 376 3.050275 GGTGGTTGAGCAGCGTCC 61.050 66.667 0.00 0.00 0.00 4.79
377 379 3.716006 CACGGTGGTTGAGCAGCG 61.716 66.667 26.61 26.61 46.13 5.18
400 402 6.312918 ACATGACGAATTATGTAGGAACACAC 59.687 38.462 0.00 0.00 38.78 3.82
401 403 6.312672 CACATGACGAATTATGTAGGAACACA 59.687 38.462 0.00 0.00 38.78 3.72
431 437 1.404315 GCGAGTTCTGAAGGGACGATT 60.404 52.381 0.00 0.00 0.00 3.34
433 439 1.176619 TGCGAGTTCTGAAGGGACGA 61.177 55.000 0.00 0.00 0.00 4.20
434 440 0.734253 CTGCGAGTTCTGAAGGGACG 60.734 60.000 0.00 0.00 0.00 4.79
441 447 4.754618 TGAAAATTAAGCTGCGAGTTCTGA 59.245 37.500 0.00 0.00 0.00 3.27
446 452 2.162408 GCCTGAAAATTAAGCTGCGAGT 59.838 45.455 0.00 0.00 0.00 4.18
447 453 2.162208 TGCCTGAAAATTAAGCTGCGAG 59.838 45.455 0.00 0.00 0.00 5.03
482 488 1.007729 GTCGTCGGCTTTCGTTTATCG 60.008 52.381 0.00 0.00 40.32 2.92
483 489 1.007729 CGTCGTCGGCTTTCGTTTATC 60.008 52.381 0.00 0.00 40.32 1.75
501 507 1.458020 TATGGTATGGGCCGTCCGT 60.458 57.895 0.00 7.81 38.76 4.69
502 508 1.005394 GTATGGTATGGGCCGTCCG 60.005 63.158 0.00 0.00 38.76 4.79
515 521 2.734755 ATGGGTGTGTGATGGTATGG 57.265 50.000 0.00 0.00 0.00 2.74
519 525 0.392461 GCGTATGGGTGTGTGATGGT 60.392 55.000 0.00 0.00 0.00 3.55
523 548 0.036765 GGAAGCGTATGGGTGTGTGA 60.037 55.000 0.00 0.00 0.00 3.58
526 551 0.249120 TCTGGAAGCGTATGGGTGTG 59.751 55.000 0.00 0.00 0.00 3.82
544 569 7.697291 GTGTAGTGTAGTGTATACTCTTGCTTC 59.303 40.741 12.39 7.43 38.36 3.86
545 570 7.362747 GGTGTAGTGTAGTGTATACTCTTGCTT 60.363 40.741 12.39 1.22 38.36 3.91
546 571 6.095160 GGTGTAGTGTAGTGTATACTCTTGCT 59.905 42.308 12.39 10.40 38.36 3.91
551 618 5.220739 CGGTGGTGTAGTGTAGTGTATACTC 60.221 48.000 4.17 0.09 38.36 2.59
555 622 3.192001 CACGGTGGTGTAGTGTAGTGTAT 59.808 47.826 0.00 0.00 39.38 2.29
560 627 1.610038 TGTCACGGTGGTGTAGTGTAG 59.390 52.381 8.50 0.00 44.68 2.74
588 687 1.372623 GACGTGGTGACCGAAGTCC 60.373 63.158 11.26 0.00 42.81 3.85
603 702 3.259425 AAAGACGGACGGACGGACG 62.259 63.158 6.00 8.35 38.39 4.79
604 703 1.443363 GAAAGACGGACGGACGGAC 60.443 63.158 6.00 0.32 38.39 4.79
605 704 1.174712 AAGAAAGACGGACGGACGGA 61.175 55.000 6.00 0.00 38.39 4.69
612 711 1.721926 CGAGAGCAAAGAAAGACGGAC 59.278 52.381 0.00 0.00 0.00 4.79
615 714 0.440371 GCCGAGAGCAAAGAAAGACG 59.560 55.000 0.00 0.00 42.97 4.18
620 734 2.030412 TGCGCCGAGAGCAAAGAA 59.970 55.556 4.18 0.00 44.04 2.52
734 849 3.787001 CAGAAGGGTCCGGGCTCC 61.787 72.222 0.00 3.33 0.00 4.70
735 850 3.787001 CCAGAAGGGTCCGGGCTC 61.787 72.222 5.77 0.00 0.00 4.70
813 931 1.734137 CCCTATATAGGCGCGCGAT 59.266 57.895 37.18 23.62 42.26 4.58
858 976 1.348366 TGCTACAGCTAAAACGGGGAA 59.652 47.619 2.44 0.00 42.66 3.97
882 1000 0.034477 TGGAGCCGGAATTTTCTCCC 60.034 55.000 17.73 4.31 43.33 4.30
926 1044 1.302511 GGTTTCTGGAAGCTGGCGA 60.303 57.895 0.00 0.00 33.00 5.54
927 1045 2.335712 GGGTTTCTGGAAGCTGGCG 61.336 63.158 0.00 0.00 36.04 5.69
961 1090 2.269172 GAATCGAAGGAAGGAACGGAC 58.731 52.381 0.00 0.00 0.00 4.79
962 1091 1.135199 CGAATCGAAGGAAGGAACGGA 60.135 52.381 0.00 0.00 0.00 4.69
963 1092 1.278238 CGAATCGAAGGAAGGAACGG 58.722 55.000 0.00 0.00 0.00 4.44
964 1093 0.645868 GCGAATCGAAGGAAGGAACG 59.354 55.000 6.91 0.00 0.00 3.95
965 1094 1.661112 CTGCGAATCGAAGGAAGGAAC 59.339 52.381 6.91 0.00 0.00 3.62
966 1095 2.010145 CTGCGAATCGAAGGAAGGAA 57.990 50.000 6.91 0.00 0.00 3.36
967 1096 3.741029 CTGCGAATCGAAGGAAGGA 57.259 52.632 6.91 0.00 0.00 3.36
1036 1165 2.450699 GGGGGAGGGGAGGGATTC 60.451 72.222 0.00 0.00 0.00 2.52
1057 1196 3.934391 AAACTCCGCGCCGAGAAGG 62.934 63.158 28.57 11.43 44.97 3.46
1080 1229 4.282195 ACGCCCAAATTCAGAACCAAATTA 59.718 37.500 0.00 0.00 0.00 1.40
1081 1230 3.070878 ACGCCCAAATTCAGAACCAAATT 59.929 39.130 0.00 0.00 0.00 1.82
1106 1255 0.594796 CCTGCAAGCAACCGAACAAC 60.595 55.000 0.00 0.00 0.00 3.32
1107 1256 0.749818 TCCTGCAAGCAACCGAACAA 60.750 50.000 0.00 0.00 0.00 2.83
1453 1617 4.712425 CAGTTTGGCAGCGGCAGC 62.712 66.667 11.88 9.05 43.71 5.25
1629 1798 1.971167 GGCAGATTCCACGCACCAA 60.971 57.895 0.00 0.00 0.00 3.67
1630 1799 2.359850 GGCAGATTCCACGCACCA 60.360 61.111 0.00 0.00 0.00 4.17
1650 1819 1.798283 ATCTAGTCGGGATCGAGACG 58.202 55.000 11.79 0.00 46.91 4.18
1735 1904 4.943272 CGCGACAAAATAAAATGAAATGCG 59.057 37.500 0.00 0.00 0.00 4.73
1748 1917 0.171007 CTGGATTGCCGCGACAAAAT 59.829 50.000 12.92 3.58 36.79 1.82
1756 1926 4.166011 GTGTCGCTGGATTGCCGC 62.166 66.667 0.00 0.00 36.79 6.53
1797 1967 0.951558 GGCAACATCGTTGGAACAGT 59.048 50.000 8.79 0.00 42.39 3.55
1800 1970 1.234821 TCAGGCAACATCGTTGGAAC 58.765 50.000 8.79 0.00 41.41 3.62
1804 1978 2.587956 CAACATCAGGCAACATCGTTG 58.412 47.619 2.48 2.48 41.41 4.10
1808 1982 4.439305 TTTAGCAACATCAGGCAACATC 57.561 40.909 0.00 0.00 41.41 3.06
1816 1990 6.694411 GCCACATCTTATTTTAGCAACATCAG 59.306 38.462 0.00 0.00 0.00 2.90
1817 1991 6.563422 GCCACATCTTATTTTAGCAACATCA 58.437 36.000 0.00 0.00 0.00 3.07
1819 1993 5.125417 ACGCCACATCTTATTTTAGCAACAT 59.875 36.000 0.00 0.00 0.00 2.71
1822 1996 4.674101 GCACGCCACATCTTATTTTAGCAA 60.674 41.667 0.00 0.00 0.00 3.91
1829 2003 2.099592 CCAATGCACGCCACATCTTATT 59.900 45.455 0.00 0.00 0.00 1.40
1831 2005 1.093972 CCAATGCACGCCACATCTTA 58.906 50.000 0.00 0.00 0.00 2.10
1832 2006 1.885157 CCAATGCACGCCACATCTT 59.115 52.632 0.00 0.00 0.00 2.40
1833 2007 2.703798 GCCAATGCACGCCACATCT 61.704 57.895 0.00 0.00 37.47 2.90
1834 2008 2.202650 GCCAATGCACGCCACATC 60.203 61.111 0.00 0.00 37.47 3.06
1835 2009 2.990395 TGCCAATGCACGCCACAT 60.990 55.556 0.00 0.00 44.23 3.21
2335 2510 2.975799 GTTCCGTCGGCTTGGCAA 60.976 61.111 6.34 0.00 0.00 4.52
2350 2525 0.329596 GGAAGTCTGGGCATCAGGTT 59.670 55.000 6.48 1.82 43.53 3.50
2353 2528 1.681166 CCTTGGAAGTCTGGGCATCAG 60.681 57.143 0.43 0.43 44.68 2.90
2432 2610 1.149174 CATAGGCTTGGCATCCGGT 59.851 57.895 0.00 0.00 0.00 5.28
2433 2611 1.601759 CCATAGGCTTGGCATCCGG 60.602 63.158 0.00 0.00 0.00 5.14
2435 2613 0.538287 GTCCCATAGGCTTGGCATCC 60.538 60.000 9.41 0.00 35.29 3.51
2462 2640 4.200283 CTCTCCTCCGCGGTCTGC 62.200 72.222 27.15 0.00 41.47 4.26
2469 2647 2.826738 AGACGAGCTCTCCTCCGC 60.827 66.667 12.85 0.00 37.27 5.54
2471 2649 0.667993 CATCAGACGAGCTCTCCTCC 59.332 60.000 12.85 0.00 37.27 4.30
2478 2659 4.928398 CTTGGCATCAGACGAGCT 57.072 55.556 0.00 0.00 0.00 4.09
2484 2665 1.001764 CCACAGGCTTGGCATCAGA 60.002 57.895 0.00 0.00 0.00 3.27
2486 2667 2.036098 CCCACAGGCTTGGCATCA 59.964 61.111 0.00 0.00 35.00 3.07
2769 3092 2.044860 GACGAACTCGCGAATCCATAG 58.955 52.381 11.33 0.00 44.43 2.23
2781 3104 1.609555 ACAGTCCACAGAGACGAACTC 59.390 52.381 0.00 0.00 45.22 3.01
2782 3105 1.338337 CACAGTCCACAGAGACGAACT 59.662 52.381 0.00 0.00 41.83 3.01
2783 3106 1.603172 CCACAGTCCACAGAGACGAAC 60.603 57.143 0.00 0.00 41.83 3.95
2784 3107 0.673985 CCACAGTCCACAGAGACGAA 59.326 55.000 0.00 0.00 41.83 3.85
2858 3395 2.104111 CACAGACCCCGGAGCATAAATA 59.896 50.000 0.73 0.00 0.00 1.40
3001 3542 1.831389 GAAAACGACGCAGCAGCTCA 61.831 55.000 0.00 0.00 39.10 4.26
3035 3576 4.687215 GAGCAGCGCAGGACACCA 62.687 66.667 11.47 0.00 0.00 4.17
3038 3579 4.426112 CGAGAGCAGCGCAGGACA 62.426 66.667 11.47 0.00 0.00 4.02
3085 3679 2.623878 TGCAGAGACGGTTTGGTAAA 57.376 45.000 0.00 0.00 0.00 2.01
3118 3712 1.153647 CGGAGCATAACAGGTCGCA 60.154 57.895 0.00 0.00 36.90 5.10
3203 3797 1.375268 GGCTCTCGCTGAAGCAAGT 60.375 57.895 2.79 0.00 42.21 3.16
3212 3806 2.607750 TCCCTTTGGGCTCTCGCT 60.608 61.111 0.00 0.00 43.94 4.93
3224 3818 4.065281 CGCCTCGTTCCGTCCCTT 62.065 66.667 0.00 0.00 0.00 3.95
3231 3825 4.388499 TGAAGCCCGCCTCGTTCC 62.388 66.667 0.00 0.00 0.00 3.62
3232 3826 3.119096 GTGAAGCCCGCCTCGTTC 61.119 66.667 0.00 0.00 0.00 3.95
3233 3827 3.883744 CTGTGAAGCCCGCCTCGTT 62.884 63.158 0.00 0.00 0.00 3.85
3234 3828 4.379243 CTGTGAAGCCCGCCTCGT 62.379 66.667 0.00 0.00 0.00 4.18
3235 3829 3.376935 ATCTGTGAAGCCCGCCTCG 62.377 63.158 0.00 0.00 0.00 4.63
3387 3981 1.516365 CGGTCGCGGAGAGGTGATAT 61.516 60.000 6.13 0.00 0.00 1.63
3389 3983 3.518998 CGGTCGCGGAGAGGTGAT 61.519 66.667 6.13 0.00 0.00 3.06
3390 3984 3.989838 ATCGGTCGCGGAGAGGTGA 62.990 63.158 6.13 0.00 0.00 4.02
3391 3985 3.471244 GATCGGTCGCGGAGAGGTG 62.471 68.421 6.13 0.00 0.00 4.00
3392 3986 3.210528 GATCGGTCGCGGAGAGGT 61.211 66.667 6.13 0.00 0.00 3.85
3410 4004 2.883730 CACGCCGTGTACATCGGG 60.884 66.667 26.96 21.20 46.90 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.