Multiple sequence alignment - TraesCS2D01G113600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G113600 chr2D 100.000 4034 0 0 1 4034 62955693 62959726 0.000000e+00 7450
1 TraesCS2D01G113600 chr2D 97.059 170 4 1 1 170 18896143 18895975 6.600000e-73 285
2 TraesCS2D01G113600 chr2D 96.491 171 5 1 1 171 621490499 621490330 8.540000e-72 281
3 TraesCS2D01G113600 chr2D 96.471 170 5 1 1 170 19000389 19000221 3.070000e-71 279
4 TraesCS2D01G113600 chr2B 89.605 3088 202 51 662 3711 98361290 98364296 0.000000e+00 3814
5 TraesCS2D01G113600 chr2B 92.332 313 15 5 3730 4034 98364345 98364656 1.720000e-118 436
6 TraesCS2D01G113600 chr2A 91.385 2542 161 26 813 3334 63824449 63826952 0.000000e+00 3428
7 TraesCS2D01G113600 chr2A 88.889 171 11 5 170 332 63823911 63824081 1.900000e-48 204
8 TraesCS2D01G113600 chr7B 91.888 752 45 7 1608 2349 391659908 391659163 0.000000e+00 1037
9 TraesCS2D01G113600 chr7B 85.057 261 31 8 1312 1570 391660168 391659914 4.000000e-65 259
10 TraesCS2D01G113600 chr3D 97.661 171 3 1 1 170 356953627 356953797 3.940000e-75 292
11 TraesCS2D01G113600 chr1D 97.076 171 4 1 1 171 463949205 463949374 1.830000e-73 287
12 TraesCS2D01G113600 chr1D 97.059 170 4 1 1 169 339963842 339963673 6.600000e-73 285
13 TraesCS2D01G113600 chr6D 95.402 174 5 3 1 174 422074105 422074275 1.430000e-69 274
14 TraesCS2D01G113600 chr7D 94.886 176 3 3 1 174 602191909 602192080 1.850000e-68 270
15 TraesCS2D01G113600 chr4D 94.798 173 9 0 1 173 330365395 330365223 1.850000e-68 270
16 TraesCS2D01G113600 chr3A 81.967 183 22 7 2348 2521 354931394 354931574 1.170000e-30 145
17 TraesCS2D01G113600 chr5A 81.707 164 23 4 1363 1522 5348024 5347864 3.270000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G113600 chr2D 62955693 62959726 4033 False 7450 7450 100.0000 1 4034 1 chr2D.!!$F1 4033
1 TraesCS2D01G113600 chr2B 98361290 98364656 3366 False 2125 3814 90.9685 662 4034 2 chr2B.!!$F1 3372
2 TraesCS2D01G113600 chr2A 63823911 63826952 3041 False 1816 3428 90.1370 170 3334 2 chr2A.!!$F1 3164
3 TraesCS2D01G113600 chr7B 391659163 391660168 1005 True 648 1037 88.4725 1312 2349 2 chr7B.!!$R1 1037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.038526 CGCGTCCATGTATACCCTCC 60.039 60.0 0.00 0.00 0.00 4.30 F
611 621 0.040646 TCGGGACCGGCTATGGATAT 59.959 55.0 11.27 0.00 40.25 1.63 F
883 991 0.109781 CGGTCAAAATTGCCCAGACG 60.110 55.0 0.00 0.00 0.00 4.18 F
1162 1272 0.173481 TGATTTCCTCCGTGCTCGAG 59.827 55.0 8.45 8.45 39.71 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 1250 0.391661 GAGCACGGAGGAAATCAGCA 60.392 55.0 0.00 0.0 0.00 4.41 R
1749 1875 0.528684 GCCGGGAAGAAGACTCATCG 60.529 60.0 2.18 0.0 0.00 3.84 R
2061 2193 1.160137 AGAAGATGAAGCGTGGCAAC 58.840 50.0 0.00 0.0 0.00 4.17 R
3059 3217 0.531753 TACAAACAGCGCACTCAGCA 60.532 50.0 11.47 0.0 46.13 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.800188 TGCCACGCCTTCTAGGAA 58.200 55.556 0.00 0.00 37.67 3.36
18 19 2.296920 TGCCACGCCTTCTAGGAAT 58.703 52.632 0.00 0.00 37.67 3.01
19 20 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
20 21 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
21 22 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
22 23 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
23 24 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
24 25 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
25 26 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
26 27 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
27 28 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
28 29 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
29 30 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
30 31 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
31 32 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
32 33 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
33 34 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
34 35 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
35 36 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
36 37 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
37 38 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
38 39 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
39 40 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
40 41 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
41 42 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
42 43 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
43 44 6.144241 TGTGATTTCATGACGAATTTTTGCAG 59.856 34.615 0.00 0.00 32.32 4.41
44 45 5.634439 TGATTTCATGACGAATTTTTGCAGG 59.366 36.000 0.00 0.00 32.32 4.85
45 46 2.945278 TCATGACGAATTTTTGCAGGC 58.055 42.857 0.00 0.00 0.00 4.85
46 47 2.295629 TCATGACGAATTTTTGCAGGCA 59.704 40.909 0.00 0.00 0.00 4.75
47 48 2.132740 TGACGAATTTTTGCAGGCAC 57.867 45.000 0.00 0.00 0.00 5.01
48 49 1.680735 TGACGAATTTTTGCAGGCACT 59.319 42.857 0.00 0.00 43.88 4.40
49 50 2.100584 TGACGAATTTTTGCAGGCACTT 59.899 40.909 0.00 0.00 34.60 3.16
50 51 3.316588 TGACGAATTTTTGCAGGCACTTA 59.683 39.130 0.00 0.00 34.60 2.24
51 52 4.022416 TGACGAATTTTTGCAGGCACTTAT 60.022 37.500 0.00 0.00 34.60 1.73
52 53 5.182190 TGACGAATTTTTGCAGGCACTTATA 59.818 36.000 0.00 0.00 34.60 0.98
53 54 6.019779 ACGAATTTTTGCAGGCACTTATAA 57.980 33.333 0.00 0.00 34.60 0.98
54 55 5.861787 ACGAATTTTTGCAGGCACTTATAAC 59.138 36.000 0.00 0.00 34.60 1.89
55 56 6.092748 CGAATTTTTGCAGGCACTTATAACT 58.907 36.000 0.00 0.00 34.60 2.24
56 57 6.586082 CGAATTTTTGCAGGCACTTATAACTT 59.414 34.615 0.00 0.00 34.60 2.66
57 58 7.116233 CGAATTTTTGCAGGCACTTATAACTTT 59.884 33.333 0.00 0.00 34.60 2.66
58 59 8.675705 AATTTTTGCAGGCACTTATAACTTTT 57.324 26.923 0.00 0.00 34.60 2.27
59 60 7.475771 TTTTTGCAGGCACTTATAACTTTTG 57.524 32.000 0.00 0.00 34.60 2.44
60 61 5.782893 TTGCAGGCACTTATAACTTTTGT 57.217 34.783 0.00 0.00 34.60 2.83
61 62 5.371115 TGCAGGCACTTATAACTTTTGTC 57.629 39.130 0.00 0.00 34.60 3.18
62 63 4.824537 TGCAGGCACTTATAACTTTTGTCA 59.175 37.500 0.00 0.00 34.60 3.58
63 64 5.300539 TGCAGGCACTTATAACTTTTGTCAA 59.699 36.000 0.00 0.00 34.60 3.18
64 65 6.015519 TGCAGGCACTTATAACTTTTGTCAAT 60.016 34.615 0.00 0.00 34.60 2.57
65 66 6.308766 GCAGGCACTTATAACTTTTGTCAATG 59.691 38.462 0.00 0.00 34.60 2.82
66 67 7.370383 CAGGCACTTATAACTTTTGTCAATGT 58.630 34.615 0.00 0.00 34.60 2.71
67 68 7.867403 CAGGCACTTATAACTTTTGTCAATGTT 59.133 33.333 8.76 8.76 34.60 2.71
68 69 8.421002 AGGCACTTATAACTTTTGTCAATGTTT 58.579 29.630 8.96 0.00 27.25 2.83
69 70 8.699749 GGCACTTATAACTTTTGTCAATGTTTC 58.300 33.333 8.96 0.00 33.49 2.78
70 71 9.463443 GCACTTATAACTTTTGTCAATGTTTCT 57.537 29.630 8.96 2.82 33.49 2.52
78 79 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
132 133 9.758651 ATTTAGTTTTGATTTTACTGTTCACCC 57.241 29.630 0.00 0.00 0.00 4.61
133 134 5.827666 AGTTTTGATTTTACTGTTCACCCG 58.172 37.500 0.00 0.00 0.00 5.28
134 135 5.591067 AGTTTTGATTTTACTGTTCACCCGA 59.409 36.000 0.00 0.00 0.00 5.14
135 136 5.682943 TTTGATTTTACTGTTCACCCGAG 57.317 39.130 0.00 0.00 0.00 4.63
136 137 3.071479 TGATTTTACTGTTCACCCGAGC 58.929 45.455 0.00 0.00 0.00 5.03
137 138 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
138 139 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
139 140 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
140 141 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
141 142 0.687354 ACTGTTCACCCGAGCTCATT 59.313 50.000 15.40 0.00 0.00 2.57
142 143 1.072331 ACTGTTCACCCGAGCTCATTT 59.928 47.619 15.40 0.00 0.00 2.32
143 144 1.466167 CTGTTCACCCGAGCTCATTTG 59.534 52.381 15.40 6.81 0.00 2.32
144 145 1.071542 TGTTCACCCGAGCTCATTTGA 59.928 47.619 15.40 9.18 0.00 2.69
145 146 1.734465 GTTCACCCGAGCTCATTTGAG 59.266 52.381 15.40 3.13 44.75 3.02
164 165 1.006805 CTCGGGAGCAGATTAGCCG 60.007 63.158 0.00 0.00 34.23 5.52
165 166 2.663188 CGGGAGCAGATTAGCCGC 60.663 66.667 0.00 0.00 34.23 6.53
166 167 2.663188 GGGAGCAGATTAGCCGCG 60.663 66.667 0.00 0.00 34.23 6.46
167 168 2.107141 GGAGCAGATTAGCCGCGT 59.893 61.111 4.92 0.00 34.23 6.01
168 169 1.951631 GGAGCAGATTAGCCGCGTC 60.952 63.158 4.92 0.00 34.23 5.19
182 183 0.038526 CGCGTCCATGTATACCCTCC 60.039 60.000 0.00 0.00 0.00 4.30
183 184 1.045407 GCGTCCATGTATACCCTCCA 58.955 55.000 0.00 0.00 0.00 3.86
237 241 6.819397 ACCAAAAATCTGTCTAGCCTAAAC 57.181 37.500 0.00 0.00 0.00 2.01
248 252 5.172205 GTCTAGCCTAAACTTCAGTCAAGG 58.828 45.833 4.00 4.00 36.26 3.61
253 257 5.656859 AGCCTAAACTTCAGTCAAGGTTTTT 59.343 36.000 8.58 0.00 39.13 1.94
254 258 6.831868 AGCCTAAACTTCAGTCAAGGTTTTTA 59.168 34.615 8.58 0.00 39.13 1.52
315 324 7.639113 AAGAAAAATAACTGGAGTGAACACA 57.361 32.000 7.68 0.00 0.00 3.72
316 325 7.264373 AGAAAAATAACTGGAGTGAACACAG 57.736 36.000 7.68 3.85 38.19 3.66
332 341 7.551262 AGTGAACACAGTTAAGTTAACATGTCA 59.449 33.333 24.54 21.10 38.50 3.58
333 342 8.342634 GTGAACACAGTTAAGTTAACATGTCAT 58.657 33.333 24.54 15.94 38.50 3.06
335 344 9.807386 GAACACAGTTAAGTTAACATGTCATAC 57.193 33.333 24.54 16.60 38.50 2.39
336 345 8.896320 ACACAGTTAAGTTAACATGTCATACA 57.104 30.769 24.09 0.00 41.07 2.29
337 346 9.502091 ACACAGTTAAGTTAACATGTCATACAT 57.498 29.630 24.09 5.34 39.91 2.29
339 348 9.944376 ACAGTTAAGTTAACATGTCATACATCT 57.056 29.630 24.09 0.00 36.53 2.90
344 353 6.049149 AGTTAACATGTCATACATCTTCCCG 58.951 40.000 8.61 0.00 36.53 5.14
345 354 2.838736 ACATGTCATACATCTTCCCGC 58.161 47.619 0.00 0.00 36.53 6.13
346 355 2.170397 ACATGTCATACATCTTCCCGCA 59.830 45.455 0.00 0.00 36.53 5.69
347 356 3.205338 CATGTCATACATCTTCCCGCAA 58.795 45.455 0.00 0.00 36.53 4.85
348 357 3.342377 TGTCATACATCTTCCCGCAAA 57.658 42.857 0.00 0.00 0.00 3.68
349 358 3.680490 TGTCATACATCTTCCCGCAAAA 58.320 40.909 0.00 0.00 0.00 2.44
350 359 4.075682 TGTCATACATCTTCCCGCAAAAA 58.924 39.130 0.00 0.00 0.00 1.94
377 386 9.603921 AAAATGTCATTCATCAAAACAAAGTCT 57.396 25.926 0.00 0.00 35.48 3.24
408 417 8.726988 TCTCTTACAATTACAAATACCAAGTGC 58.273 33.333 0.00 0.00 0.00 4.40
410 419 8.511321 TCTTACAATTACAAATACCAAGTGCAG 58.489 33.333 0.00 0.00 0.00 4.41
411 420 5.469479 ACAATTACAAATACCAAGTGCAGC 58.531 37.500 0.00 0.00 0.00 5.25
412 421 3.822594 TTACAAATACCAAGTGCAGCG 57.177 42.857 0.00 0.00 0.00 5.18
413 422 1.604604 ACAAATACCAAGTGCAGCGT 58.395 45.000 0.00 0.00 0.00 5.07
415 424 2.742053 ACAAATACCAAGTGCAGCGTAG 59.258 45.455 0.00 0.00 0.00 3.51
427 436 4.686227 GCGTAGAGCCGTAGACAC 57.314 61.111 0.00 0.00 40.81 3.67
428 437 1.798735 GCGTAGAGCCGTAGACACA 59.201 57.895 0.00 0.00 40.81 3.72
429 438 0.522915 GCGTAGAGCCGTAGACACAC 60.523 60.000 0.00 0.00 40.81 3.82
430 439 0.098376 CGTAGAGCCGTAGACACACC 59.902 60.000 0.00 0.00 0.00 4.16
438 447 1.214367 CGTAGACACACCAACCACAC 58.786 55.000 0.00 0.00 0.00 3.82
442 451 0.375803 GACACACCAACCACACGAAC 59.624 55.000 0.00 0.00 0.00 3.95
445 454 0.674269 ACACCAACCACACGAACGTT 60.674 50.000 0.00 0.00 0.00 3.99
455 464 3.678072 CCACACGAACGTTCTCATACATT 59.322 43.478 24.80 0.00 0.00 2.71
456 465 4.434198 CCACACGAACGTTCTCATACATTG 60.434 45.833 24.80 9.28 0.00 2.82
463 472 5.654603 ACGTTCTCATACATTGTCTACCA 57.345 39.130 0.00 0.00 0.00 3.25
467 476 6.811665 CGTTCTCATACATTGTCTACCAAAGA 59.188 38.462 0.00 0.00 36.44 2.52
496 505 8.020244 GGAGTTTCAAAGAAGATTGATCAAGTC 58.980 37.037 14.54 10.74 38.98 3.01
501 510 6.944290 TCAAAGAAGATTGATCAAGTCACCAT 59.056 34.615 14.54 0.00 36.32 3.55
510 519 5.372373 TGATCAAGTCACCATAAACACACA 58.628 37.500 0.00 0.00 0.00 3.72
534 543 2.063156 TTGTCAATGCAAACATCGCC 57.937 45.000 0.00 0.00 34.62 5.54
535 544 1.246649 TGTCAATGCAAACATCGCCT 58.753 45.000 0.00 0.00 34.62 5.52
536 545 1.612950 TGTCAATGCAAACATCGCCTT 59.387 42.857 0.00 0.00 34.62 4.35
537 546 2.035704 TGTCAATGCAAACATCGCCTTT 59.964 40.909 0.00 0.00 34.62 3.11
538 547 2.663119 GTCAATGCAAACATCGCCTTTC 59.337 45.455 0.00 0.00 34.62 2.62
539 548 1.994779 CAATGCAAACATCGCCTTTCC 59.005 47.619 0.00 0.00 34.62 3.13
540 549 1.255882 ATGCAAACATCGCCTTTCCA 58.744 45.000 0.00 0.00 0.00 3.53
541 550 0.313672 TGCAAACATCGCCTTTCCAC 59.686 50.000 0.00 0.00 0.00 4.02
542 551 0.598065 GCAAACATCGCCTTTCCACT 59.402 50.000 0.00 0.00 0.00 4.00
543 552 1.666888 GCAAACATCGCCTTTCCACTG 60.667 52.381 0.00 0.00 0.00 3.66
544 553 1.879380 CAAACATCGCCTTTCCACTGA 59.121 47.619 0.00 0.00 0.00 3.41
545 554 2.270352 AACATCGCCTTTCCACTGAA 57.730 45.000 0.00 0.00 0.00 3.02
546 555 2.270352 ACATCGCCTTTCCACTGAAA 57.730 45.000 0.00 0.00 38.14 2.69
560 569 8.884124 TTTCCACTGAAAGAATAATCCATCTT 57.116 30.769 0.00 0.00 35.58 2.40
561 570 9.973661 TTTCCACTGAAAGAATAATCCATCTTA 57.026 29.630 0.00 0.00 35.58 2.10
562 571 9.973661 TTCCACTGAAAGAATAATCCATCTTAA 57.026 29.630 0.00 0.00 34.90 1.85
563 572 9.396022 TCCACTGAAAGAATAATCCATCTTAAC 57.604 33.333 0.00 0.00 34.90 2.01
564 573 9.177608 CCACTGAAAGAATAATCCATCTTAACA 57.822 33.333 0.00 0.00 34.90 2.41
592 601 9.911788 AGATGATGTCAAACCTAGTATTTGATT 57.088 29.630 17.67 11.26 45.27 2.57
594 603 8.196802 TGATGTCAAACCTAGTATTTGATTCG 57.803 34.615 17.67 0.00 45.27 3.34
595 604 6.978343 TGTCAAACCTAGTATTTGATTCGG 57.022 37.500 17.67 0.00 45.27 4.30
599 608 4.684484 ACCTAGTATTTGATTCGGGACC 57.316 45.455 0.00 0.00 0.00 4.46
602 611 0.942252 GTATTTGATTCGGGACCGGC 59.058 55.000 11.27 0.00 40.25 6.13
603 612 0.834612 TATTTGATTCGGGACCGGCT 59.165 50.000 11.27 0.00 40.25 5.52
604 613 0.834612 ATTTGATTCGGGACCGGCTA 59.165 50.000 11.27 0.00 40.25 3.93
605 614 0.834612 TTTGATTCGGGACCGGCTAT 59.165 50.000 11.27 2.53 40.25 2.97
611 621 0.040646 TCGGGACCGGCTATGGATAT 59.959 55.000 11.27 0.00 40.25 1.63
617 627 4.080526 GGGACCGGCTATGGATATAACAAT 60.081 45.833 0.00 0.00 0.00 2.71
635 645 4.259356 ACAATCCGGCTAACTACCTTTTC 58.741 43.478 0.00 0.00 0.00 2.29
641 651 3.271729 GGCTAACTACCTTTTCTGAGGC 58.728 50.000 0.00 0.00 40.65 4.70
646 656 2.711547 ACTACCTTTTCTGAGGCAACCT 59.288 45.455 0.00 0.00 40.65 3.50
647 657 1.986882 ACCTTTTCTGAGGCAACCTG 58.013 50.000 0.00 0.00 40.65 4.00
649 659 0.600057 CTTTTCTGAGGCAACCTGGC 59.400 55.000 0.00 0.00 44.10 4.85
675 685 7.715265 ATCTGCCTAGTAACATGTTAATTCG 57.285 36.000 22.20 13.85 0.00 3.34
680 690 6.687105 GCCTAGTAACATGTTAATTCGCAAAG 59.313 38.462 22.20 12.67 0.00 2.77
727 737 7.214467 TCTCAAAGTCCATATTTTTGGTGAC 57.786 36.000 0.00 0.00 38.01 3.67
730 740 6.263392 TCAAAGTCCATATTTTTGGTGACGAA 59.737 34.615 0.00 0.00 38.01 3.85
732 742 5.067273 AGTCCATATTTTTGGTGACGAACA 58.933 37.500 0.00 0.00 38.01 3.18
733 743 5.710099 AGTCCATATTTTTGGTGACGAACAT 59.290 36.000 0.00 0.00 38.01 2.71
734 744 5.799936 GTCCATATTTTTGGTGACGAACATG 59.200 40.000 0.00 0.00 38.01 3.21
751 761 5.418310 AACATGTTTTAGTCAACGGTCTG 57.582 39.130 4.92 0.00 0.00 3.51
762 772 3.621715 GTCAACGGTCTGAACTTTGAACT 59.378 43.478 15.13 0.00 32.65 3.01
796 806 4.214332 GGCAGTCTGAACTTTCAACTAAGG 59.786 45.833 3.32 0.00 36.64 2.69
881 989 1.698506 AACGGTCAAAATTGCCCAGA 58.301 45.000 0.00 0.00 0.00 3.86
883 991 0.109781 CGGTCAAAATTGCCCAGACG 60.110 55.000 0.00 0.00 0.00 4.18
884 992 1.243902 GGTCAAAATTGCCCAGACGA 58.756 50.000 0.00 0.00 0.00 4.20
937 1045 0.468585 AAACCCCCAAAACGACTCCC 60.469 55.000 0.00 0.00 0.00 4.30
1029 1137 2.711922 CCTCCGTCTTCCTCCCACG 61.712 68.421 0.00 0.00 0.00 4.94
1108 1218 2.844451 GCTCCGCTCGCTCTCTGAT 61.844 63.158 0.00 0.00 0.00 2.90
1113 1223 1.481019 CGCTCGCTCTCTGATTGCTG 61.481 60.000 0.00 0.00 0.00 4.41
1114 1224 1.764180 GCTCGCTCTCTGATTGCTGC 61.764 60.000 0.00 0.00 0.00 5.25
1124 1234 2.160219 TCTGATTGCTGCACGATGTTTC 59.840 45.455 0.00 0.00 0.00 2.78
1155 1265 2.270352 TTTGTGCTGATTTCCTCCGT 57.730 45.000 0.00 0.00 0.00 4.69
1162 1272 0.173481 TGATTTCCTCCGTGCTCGAG 59.827 55.000 8.45 8.45 39.71 4.04
1165 1275 0.319555 TTTCCTCCGTGCTCGAGTTG 60.320 55.000 15.13 4.03 39.71 3.16
1214 1324 2.046023 CACCAGAAGCGCCATGGA 60.046 61.111 24.97 0.00 37.54 3.41
1397 1509 3.059982 TGCCTGTCGCAGCTACTT 58.940 55.556 0.00 0.00 44.64 2.24
1508 1625 0.397941 ACTGCTTACTGCTGCTCCAA 59.602 50.000 0.00 0.00 43.25 3.53
1548 1673 8.592809 AGAACTAGGAGATATGATGATTGTTCC 58.407 37.037 0.00 0.00 32.14 3.62
1565 1690 1.306148 TCCCTATCGCAGTCGTAGTG 58.694 55.000 0.00 0.00 36.96 2.74
1589 1714 2.977580 ACTTTTTAGAGACGAAGGGGGT 59.022 45.455 0.00 0.00 0.00 4.95
1590 1715 3.007723 ACTTTTTAGAGACGAAGGGGGTC 59.992 47.826 0.00 0.00 34.62 4.46
1644 1769 7.888021 AGAAGATCAGTGATACGAATAGGAGAT 59.112 37.037 5.38 0.00 0.00 2.75
1872 2003 0.459237 CTCTGTTCCTACTGCCTGCG 60.459 60.000 0.00 0.00 0.00 5.18
1889 2020 1.362355 CGGTGGCACAAACCTTTCC 59.638 57.895 20.82 0.00 44.16 3.13
2061 2193 2.290896 TGGGTTCCCACTCAGCTAAATG 60.291 50.000 6.46 0.00 0.00 2.32
2159 2291 4.494855 GCGGAAAAGTAAGTCATGATGAGC 60.495 45.833 0.00 0.00 0.00 4.26
2166 2298 8.659925 AAAGTAAGTCATGATGAGCTCTATTG 57.340 34.615 16.19 7.63 0.00 1.90
2171 2303 2.924757 TGATGAGCTCTATTGGGCAG 57.075 50.000 16.19 0.00 0.00 4.85
2189 2328 3.511699 GCAGCCTAGTTTGTAATTTGCC 58.488 45.455 0.00 0.00 0.00 4.52
2196 2335 6.094881 GCCTAGTTTGTAATTTGCCTATGTCA 59.905 38.462 0.00 0.00 0.00 3.58
2215 2354 5.125356 TGTCAGTGCATTTCATATACAGGG 58.875 41.667 0.00 0.00 0.00 4.45
2298 2440 3.806625 AAAGTGAATGTGCTGCAACTT 57.193 38.095 2.77 7.41 29.64 2.66
2299 2441 3.806625 AAGTGAATGTGCTGCAACTTT 57.193 38.095 2.77 3.65 0.00 2.66
2300 2442 4.916983 AAGTGAATGTGCTGCAACTTTA 57.083 36.364 2.77 0.00 0.00 1.85
2301 2443 4.916983 AGTGAATGTGCTGCAACTTTAA 57.083 36.364 2.77 0.00 0.00 1.52
2302 2444 4.863491 AGTGAATGTGCTGCAACTTTAAG 58.137 39.130 2.77 0.00 0.00 1.85
2303 2445 3.983344 GTGAATGTGCTGCAACTTTAAGG 59.017 43.478 2.77 0.00 0.00 2.69
2304 2446 2.730550 ATGTGCTGCAACTTTAAGGC 57.269 45.000 2.77 0.00 0.00 4.35
2305 2447 1.397672 TGTGCTGCAACTTTAAGGCA 58.602 45.000 2.77 0.00 35.96 4.75
2306 2448 1.753649 TGTGCTGCAACTTTAAGGCAA 59.246 42.857 2.77 0.00 37.06 4.52
2307 2449 2.127251 GTGCTGCAACTTTAAGGCAAC 58.873 47.619 2.77 0.00 37.06 4.17
2323 2476 4.348198 GGCAACTGAATTCTGCTAACTC 57.652 45.455 15.36 0.00 36.32 3.01
2333 2486 6.545666 TGAATTCTGCTAACTCCTGTTTTTGA 59.454 34.615 7.05 0.00 37.59 2.69
2422 2579 8.204836 ACTGAGTCGAATAATTTAGCTGGTAAT 58.795 33.333 0.00 0.00 0.00 1.89
2423 2580 8.958119 TGAGTCGAATAATTTAGCTGGTAATT 57.042 30.769 0.00 2.58 0.00 1.40
2592 2749 5.587043 TGAACTGAAATGTACGTTCAACCTT 59.413 36.000 11.62 5.26 41.72 3.50
2595 2752 5.763204 ACTGAAATGTACGTTCAACCTTGAT 59.237 36.000 11.62 0.00 37.00 2.57
2598 2755 7.970384 TGAAATGTACGTTCAACCTTGATATC 58.030 34.615 8.85 0.00 37.00 1.63
2604 2761 7.822334 TGTACGTTCAACCTTGATATCATTTCT 59.178 33.333 6.17 0.00 37.00 2.52
2677 2834 5.057149 CGAGGGGAACAATTATTGAGGTAG 58.943 45.833 12.28 0.00 0.00 3.18
2698 2855 2.166459 GGCAAAGCAAACCTTATCTCCC 59.834 50.000 0.00 0.00 32.20 4.30
2703 2860 1.668419 CAAACCTTATCTCCCCTGCG 58.332 55.000 0.00 0.00 0.00 5.18
2704 2861 1.065418 CAAACCTTATCTCCCCTGCGT 60.065 52.381 0.00 0.00 0.00 5.24
2709 2866 2.224066 CCTTATCTCCCCTGCGTTAGTG 60.224 54.545 0.00 0.00 0.00 2.74
2712 2870 1.927487 TCTCCCCTGCGTTAGTGTTA 58.073 50.000 0.00 0.00 0.00 2.41
2715 2873 4.025360 TCTCCCCTGCGTTAGTGTTATAA 58.975 43.478 0.00 0.00 0.00 0.98
2718 2876 3.869246 CCCCTGCGTTAGTGTTATAACTG 59.131 47.826 16.33 1.74 34.19 3.16
2735 2893 9.503399 GTTATAACTGATATACTTTTCCCCCTG 57.497 37.037 8.41 0.00 0.00 4.45
2748 2906 1.707989 TCCCCCTGTCAATGCTTACAA 59.292 47.619 0.00 0.00 0.00 2.41
2752 2910 4.709397 CCCCCTGTCAATGCTTACAATAAA 59.291 41.667 0.00 0.00 0.00 1.40
2756 2914 7.502226 CCCCTGTCAATGCTTACAATAAAGATA 59.498 37.037 0.00 0.00 0.00 1.98
2757 2915 9.071276 CCCTGTCAATGCTTACAATAAAGATAT 57.929 33.333 0.00 0.00 0.00 1.63
2775 2933 8.538409 AAAGATATTTGTCATTGTTCTTTGGC 57.462 30.769 0.00 0.00 32.41 4.52
2776 2934 7.230849 AGATATTTGTCATTGTTCTTTGGCA 57.769 32.000 0.00 0.00 0.00 4.92
2777 2935 7.844009 AGATATTTGTCATTGTTCTTTGGCAT 58.156 30.769 0.00 0.00 0.00 4.40
2778 2936 7.762615 AGATATTTGTCATTGTTCTTTGGCATG 59.237 33.333 0.00 0.00 0.00 4.06
2779 2937 4.933505 TTGTCATTGTTCTTTGGCATGA 57.066 36.364 0.00 0.00 0.00 3.07
2780 2938 4.508461 TGTCATTGTTCTTTGGCATGAG 57.492 40.909 0.00 0.00 0.00 2.90
2785 2943 6.309737 GTCATTGTTCTTTGGCATGAGATTTC 59.690 38.462 0.00 0.00 0.00 2.17
2794 2952 3.194116 TGGCATGAGATTTCTTTTCCTGC 59.806 43.478 0.00 0.00 0.00 4.85
2811 2969 3.947196 TCCTGCTGGTGCTTACAATAATG 59.053 43.478 9.73 0.00 40.48 1.90
2830 2988 7.814264 ATAATGAATCTTCATCCAGGTGAAC 57.186 36.000 5.92 0.00 46.60 3.18
2921 3079 0.605083 CTTCTTTTGCCCTTCCCTGC 59.395 55.000 0.00 0.00 0.00 4.85
2985 3143 0.444651 GCAAATACGCGCAGGTTACA 59.555 50.000 5.73 0.00 0.00 2.41
3059 3217 6.948309 AGCTTTGATACAATTCTGGTTAAGGT 59.052 34.615 0.00 0.00 0.00 3.50
3097 3255 0.541863 ATCCGGTCTAACAAGGGCAG 59.458 55.000 0.00 0.00 0.00 4.85
3108 3266 1.134037 ACAAGGGCAGTTTTGTCGGTA 60.134 47.619 0.00 0.00 32.32 4.02
3144 3302 5.570844 GCTTGTCTTTGGAATAGACCCACTA 60.571 44.000 0.00 0.00 41.02 2.74
3187 3347 4.283722 GGAACAGTCTTCTTCCCTTACTGA 59.716 45.833 7.70 0.00 39.93 3.41
3188 3348 4.875561 ACAGTCTTCTTCCCTTACTGAC 57.124 45.455 7.70 0.00 39.93 3.51
3191 3351 6.257586 ACAGTCTTCTTCCCTTACTGACTAT 58.742 40.000 7.70 0.00 39.93 2.12
3196 3356 4.547671 TCTTCCCTTACTGACTATCCTGG 58.452 47.826 0.00 0.00 0.00 4.45
3240 3400 2.234414 TGGCAAATCCTTGAATGGAAGC 59.766 45.455 0.00 0.00 39.85 3.86
3291 3453 2.624364 ACGTTTCGGGTTTGCCTTATTT 59.376 40.909 0.00 0.00 34.45 1.40
3294 3456 4.373527 GTTTCGGGTTTGCCTTATTTTGT 58.626 39.130 0.00 0.00 34.45 2.83
3307 3469 5.186198 CCTTATTTTGTCGGTTCATCCTCT 58.814 41.667 0.00 0.00 0.00 3.69
3312 3474 4.978083 TTGTCGGTTCATCCTCTAGTAC 57.022 45.455 0.00 0.00 0.00 2.73
3334 3496 3.441163 CGCAAAAATATCATGCTGCAGT 58.559 40.909 16.64 0.00 37.92 4.40
3335 3497 3.484649 CGCAAAAATATCATGCTGCAGTC 59.515 43.478 16.64 8.39 37.92 3.51
3336 3498 4.679662 GCAAAAATATCATGCTGCAGTCT 58.320 39.130 16.64 0.00 37.12 3.24
3337 3499 5.504501 CGCAAAAATATCATGCTGCAGTCTA 60.505 40.000 16.64 2.57 37.92 2.59
3345 3507 4.445453 TCATGCTGCAGTCTAGTATTTGG 58.555 43.478 16.64 0.00 0.00 3.28
3353 3515 3.684788 CAGTCTAGTATTTGGTGTGTGCC 59.315 47.826 0.00 0.00 0.00 5.01
3355 3517 2.300723 TCTAGTATTTGGTGTGTGCCGT 59.699 45.455 0.00 0.00 0.00 5.68
3357 3519 1.202710 AGTATTTGGTGTGTGCCGTGA 60.203 47.619 0.00 0.00 0.00 4.35
3358 3520 1.196808 GTATTTGGTGTGTGCCGTGAG 59.803 52.381 0.00 0.00 0.00 3.51
3359 3521 1.795170 ATTTGGTGTGTGCCGTGAGC 61.795 55.000 0.00 0.00 44.14 4.26
3360 3522 4.927782 TGGTGTGTGCCGTGAGCC 62.928 66.667 0.00 0.00 42.71 4.70
3361 3523 4.626081 GGTGTGTGCCGTGAGCCT 62.626 66.667 0.00 0.00 42.71 4.58
3362 3524 2.591715 GTGTGTGCCGTGAGCCTT 60.592 61.111 0.00 0.00 42.71 4.35
3363 3525 2.280797 TGTGTGCCGTGAGCCTTC 60.281 61.111 0.00 0.00 42.71 3.46
3364 3526 2.280797 GTGTGCCGTGAGCCTTCA 60.281 61.111 0.00 0.00 42.71 3.02
3379 3541 4.801164 AGCCTTCAATCCATGCTTATCTT 58.199 39.130 0.00 0.00 0.00 2.40
3385 3547 6.889301 TCAATCCATGCTTATCTTTGGATC 57.111 37.500 3.93 0.00 45.87 3.36
3396 3558 0.819582 CTTTGGATCCACCCACATGC 59.180 55.000 15.91 0.00 35.62 4.06
3409 3571 2.518949 CCACATGCGCAACAGTATTTC 58.481 47.619 17.11 0.00 0.00 2.17
3410 3572 2.518949 CACATGCGCAACAGTATTTCC 58.481 47.619 17.11 0.00 0.00 3.13
3412 3574 2.420022 ACATGCGCAACAGTATTTCCTC 59.580 45.455 17.11 0.00 0.00 3.71
3413 3575 1.448985 TGCGCAACAGTATTTCCTCC 58.551 50.000 8.16 0.00 0.00 4.30
3414 3576 0.733150 GCGCAACAGTATTTCCTCCC 59.267 55.000 0.30 0.00 0.00 4.30
3415 3577 1.679032 GCGCAACAGTATTTCCTCCCT 60.679 52.381 0.30 0.00 0.00 4.20
3416 3578 2.711542 CGCAACAGTATTTCCTCCCTT 58.288 47.619 0.00 0.00 0.00 3.95
3417 3579 2.420022 CGCAACAGTATTTCCTCCCTTG 59.580 50.000 0.00 0.00 0.00 3.61
3418 3580 3.686016 GCAACAGTATTTCCTCCCTTGA 58.314 45.455 0.00 0.00 0.00 3.02
3419 3581 4.273318 GCAACAGTATTTCCTCCCTTGAT 58.727 43.478 0.00 0.00 0.00 2.57
3420 3582 4.096984 GCAACAGTATTTCCTCCCTTGATG 59.903 45.833 0.00 0.00 0.00 3.07
3421 3583 5.256474 CAACAGTATTTCCTCCCTTGATGT 58.744 41.667 0.00 0.00 0.00 3.06
3422 3584 6.414732 CAACAGTATTTCCTCCCTTGATGTA 58.585 40.000 0.00 0.00 0.00 2.29
3423 3585 6.636454 ACAGTATTTCCTCCCTTGATGTAA 57.364 37.500 0.00 0.00 0.00 2.41
3424 3586 6.415573 ACAGTATTTCCTCCCTTGATGTAAC 58.584 40.000 0.00 0.00 0.00 2.50
3425 3587 5.823045 CAGTATTTCCTCCCTTGATGTAACC 59.177 44.000 0.00 0.00 0.00 2.85
3426 3588 5.731678 AGTATTTCCTCCCTTGATGTAACCT 59.268 40.000 0.00 0.00 0.00 3.50
3427 3589 4.301072 TTTCCTCCCTTGATGTAACCTG 57.699 45.455 0.00 0.00 0.00 4.00
3428 3590 1.559682 TCCTCCCTTGATGTAACCTGC 59.440 52.381 0.00 0.00 0.00 4.85
3440 3602 7.517614 TGATGTAACCTGCTTTACAATTTGA 57.482 32.000 2.79 0.00 43.47 2.69
3451 3613 9.846248 CTGCTTTACAATTTGAGCTATAAAAGT 57.154 29.630 2.79 0.00 36.16 2.66
3489 3651 4.937201 AAAAGTTCGCCTTCTTTTGGAT 57.063 36.364 0.00 0.00 40.73 3.41
3571 3733 9.553064 AACATTCTTCACTCAAGATATATCCAC 57.447 33.333 9.18 0.00 41.02 4.02
3573 3735 9.205719 CATTCTTCACTCAAGATATATCCACTG 57.794 37.037 9.18 5.13 41.02 3.66
3598 3760 6.212888 ACAAGCTAAATCTTTGCCATAAGG 57.787 37.500 0.00 0.00 38.23 2.69
3650 3812 7.811117 AGGCACATACTACTTAACAACAAAA 57.189 32.000 0.00 0.00 0.00 2.44
3651 3813 8.228035 AGGCACATACTACTTAACAACAAAAA 57.772 30.769 0.00 0.00 0.00 1.94
3676 3838 4.211125 TGGCACACCATTTACTCTTTTCA 58.789 39.130 0.00 0.00 42.67 2.69
3704 3866 6.036953 CACAATGTAAAGTTGCCACAAACATT 59.963 34.615 8.70 8.70 34.56 2.71
3705 3867 6.036953 ACAATGTAAAGTTGCCACAAACATTG 59.963 34.615 25.04 25.04 44.75 2.82
3706 3868 3.868077 TGTAAAGTTGCCACAAACATTGC 59.132 39.130 0.00 0.00 32.21 3.56
3707 3869 2.985957 AAGTTGCCACAAACATTGCT 57.014 40.000 0.00 0.00 32.21 3.91
3708 3870 2.514205 AGTTGCCACAAACATTGCTC 57.486 45.000 0.00 0.00 32.21 4.26
3709 3871 2.034124 AGTTGCCACAAACATTGCTCT 58.966 42.857 0.00 0.00 32.21 4.09
3710 3872 3.221771 AGTTGCCACAAACATTGCTCTA 58.778 40.909 0.00 0.00 32.21 2.43
3711 3873 3.828451 AGTTGCCACAAACATTGCTCTAT 59.172 39.130 0.00 0.00 32.21 1.98
3712 3874 5.009631 AGTTGCCACAAACATTGCTCTATA 58.990 37.500 0.00 0.00 32.21 1.31
3713 3875 5.124457 AGTTGCCACAAACATTGCTCTATAG 59.876 40.000 0.00 0.00 32.21 1.31
3714 3876 4.842574 TGCCACAAACATTGCTCTATAGA 58.157 39.130 1.69 1.69 0.00 1.98
3715 3877 4.635765 TGCCACAAACATTGCTCTATAGAC 59.364 41.667 0.00 0.00 0.00 2.59
3716 3878 4.635765 GCCACAAACATTGCTCTATAGACA 59.364 41.667 0.00 0.00 0.00 3.41
3717 3879 5.297776 GCCACAAACATTGCTCTATAGACAT 59.702 40.000 0.00 0.00 0.00 3.06
3751 3956 3.059352 ACTGGTTCCACTGAATGCTAC 57.941 47.619 0.00 0.00 31.98 3.58
3770 3975 9.777297 AATGCTACAACCAAAATATTTTCTGTT 57.223 25.926 18.11 16.59 0.00 3.16
3772 3977 8.417106 TGCTACAACCAAAATATTTTCTGTTGA 58.583 29.630 33.56 23.92 39.67 3.18
3795 4000 8.894409 TGATCTTTATCAAAGTTAAACATGCG 57.106 30.769 0.00 0.00 39.20 4.73
3803 4008 1.459592 AGTTAAACATGCGTGCGAGAC 59.540 47.619 5.64 0.46 0.00 3.36
3804 4009 1.193650 GTTAAACATGCGTGCGAGACA 59.806 47.619 5.64 0.00 0.00 3.41
3818 4023 3.003480 GCGAGACATAAACTGCTTCCTT 58.997 45.455 0.00 0.00 0.00 3.36
3824 4029 6.769512 AGACATAAACTGCTTCCTTGAGTAA 58.230 36.000 0.00 0.00 0.00 2.24
3865 4070 8.615211 TCAAATAAACATCTGAAATGATCTCGG 58.385 33.333 0.00 0.00 0.00 4.63
3939 4144 6.349944 GCTTTCTTGGATCTTGAACACATCAT 60.350 38.462 0.00 0.00 38.03 2.45
3940 4145 6.505044 TTCTTGGATCTTGAACACATCATG 57.495 37.500 0.00 0.00 38.03 3.07
3941 4146 5.563592 TCTTGGATCTTGAACACATCATGT 58.436 37.500 0.00 0.00 46.42 3.21
4007 4220 6.037172 CACGGTGGAGAAAATTAATAGTCCTG 59.963 42.308 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
1 2 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
2 3 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
3 4 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
4 5 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
5 6 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
6 7 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
7 8 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
8 9 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
9 10 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
10 11 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
11 12 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
12 13 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
13 14 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
14 15 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
15 16 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
16 17 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
17 18 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
18 19 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
19 20 6.400303 CCTGCAAAAATTCGTCATGAAATCAC 60.400 38.462 0.00 0.00 40.71 3.06
20 21 5.634439 CCTGCAAAAATTCGTCATGAAATCA 59.366 36.000 0.00 0.00 40.71 2.57
21 22 5.445010 GCCTGCAAAAATTCGTCATGAAATC 60.445 40.000 0.00 0.00 40.71 2.17
22 23 4.389687 GCCTGCAAAAATTCGTCATGAAAT 59.610 37.500 0.00 0.00 40.71 2.17
23 24 3.740321 GCCTGCAAAAATTCGTCATGAAA 59.260 39.130 0.00 0.00 40.71 2.69
24 25 3.243670 TGCCTGCAAAAATTCGTCATGAA 60.244 39.130 0.00 0.00 41.81 2.57
25 26 2.295629 TGCCTGCAAAAATTCGTCATGA 59.704 40.909 0.00 0.00 0.00 3.07
26 27 2.409378 GTGCCTGCAAAAATTCGTCATG 59.591 45.455 0.00 0.00 0.00 3.07
27 28 2.297033 AGTGCCTGCAAAAATTCGTCAT 59.703 40.909 0.00 0.00 0.00 3.06
28 29 1.680735 AGTGCCTGCAAAAATTCGTCA 59.319 42.857 0.00 0.00 0.00 4.35
29 30 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
30 31 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
31 32 6.092748 AGTTATAAGTGCCTGCAAAAATTCG 58.907 36.000 0.00 0.00 0.00 3.34
32 33 7.889589 AAGTTATAAGTGCCTGCAAAAATTC 57.110 32.000 0.00 0.00 0.00 2.17
33 34 8.558700 CAAAAGTTATAAGTGCCTGCAAAAATT 58.441 29.630 0.00 0.00 0.00 1.82
34 35 7.714813 ACAAAAGTTATAAGTGCCTGCAAAAAT 59.285 29.630 0.00 0.00 0.00 1.82
35 36 7.044798 ACAAAAGTTATAAGTGCCTGCAAAAA 58.955 30.769 0.00 0.00 0.00 1.94
36 37 6.578023 ACAAAAGTTATAAGTGCCTGCAAAA 58.422 32.000 0.00 0.00 0.00 2.44
37 38 6.155475 ACAAAAGTTATAAGTGCCTGCAAA 57.845 33.333 0.00 0.00 0.00 3.68
38 39 5.300539 TGACAAAAGTTATAAGTGCCTGCAA 59.699 36.000 0.00 0.00 0.00 4.08
39 40 4.824537 TGACAAAAGTTATAAGTGCCTGCA 59.175 37.500 0.00 0.00 0.00 4.41
40 41 5.371115 TGACAAAAGTTATAAGTGCCTGC 57.629 39.130 0.00 0.00 0.00 4.85
41 42 7.370383 ACATTGACAAAAGTTATAAGTGCCTG 58.630 34.615 0.00 0.00 0.00 4.85
42 43 7.524717 ACATTGACAAAAGTTATAAGTGCCT 57.475 32.000 0.00 0.00 0.00 4.75
43 44 8.587952 AAACATTGACAAAAGTTATAAGTGCC 57.412 30.769 9.07 0.00 0.00 5.01
44 45 9.463443 AGAAACATTGACAAAAGTTATAAGTGC 57.537 29.630 9.07 0.00 0.00 4.40
52 53 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
106 107 9.758651 GGGTGAACAGTAAAATCAAAACTAAAT 57.241 29.630 0.00 0.00 0.00 1.40
107 108 7.916450 CGGGTGAACAGTAAAATCAAAACTAAA 59.084 33.333 0.00 0.00 0.00 1.85
108 109 7.282675 TCGGGTGAACAGTAAAATCAAAACTAA 59.717 33.333 0.00 0.00 0.00 2.24
109 110 6.766944 TCGGGTGAACAGTAAAATCAAAACTA 59.233 34.615 0.00 0.00 0.00 2.24
110 111 5.591067 TCGGGTGAACAGTAAAATCAAAACT 59.409 36.000 0.00 0.00 0.00 2.66
111 112 5.823353 TCGGGTGAACAGTAAAATCAAAAC 58.177 37.500 0.00 0.00 0.00 2.43
112 113 5.506649 GCTCGGGTGAACAGTAAAATCAAAA 60.507 40.000 0.00 0.00 0.00 2.44
113 114 4.023536 GCTCGGGTGAACAGTAAAATCAAA 60.024 41.667 0.00 0.00 0.00 2.69
114 115 3.500680 GCTCGGGTGAACAGTAAAATCAA 59.499 43.478 0.00 0.00 0.00 2.57
115 116 3.071479 GCTCGGGTGAACAGTAAAATCA 58.929 45.455 0.00 0.00 0.00 2.57
116 117 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
117 118 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
118 119 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
119 120 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
120 121 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
121 122 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
122 123 0.687354 AATGAGCTCGGGTGAACAGT 59.313 50.000 9.64 0.00 0.00 3.55
123 124 1.466167 CAAATGAGCTCGGGTGAACAG 59.534 52.381 9.64 0.00 0.00 3.16
124 125 1.071542 TCAAATGAGCTCGGGTGAACA 59.928 47.619 9.64 0.00 0.00 3.18
125 126 1.734465 CTCAAATGAGCTCGGGTGAAC 59.266 52.381 9.64 0.00 35.13 3.18
126 127 2.099141 CTCAAATGAGCTCGGGTGAA 57.901 50.000 9.64 0.00 35.13 3.18
127 128 3.840831 CTCAAATGAGCTCGGGTGA 57.159 52.632 9.64 10.63 35.13 4.02
146 147 1.006805 CGGCTAATCTGCTCCCGAG 60.007 63.158 0.00 0.00 41.34 4.63
147 148 3.129300 CGGCTAATCTGCTCCCGA 58.871 61.111 0.00 0.00 41.34 5.14
148 149 2.663188 GCGGCTAATCTGCTCCCG 60.663 66.667 0.00 0.00 43.74 5.14
149 150 2.663188 CGCGGCTAATCTGCTCCC 60.663 66.667 0.00 0.00 44.92 4.30
150 151 1.951631 GACGCGGCTAATCTGCTCC 60.952 63.158 12.47 0.00 44.92 4.70
151 152 1.951631 GGACGCGGCTAATCTGCTC 60.952 63.158 13.91 0.00 44.92 4.26
152 153 2.032860 ATGGACGCGGCTAATCTGCT 62.033 55.000 13.91 0.00 44.92 4.24
153 154 1.595382 ATGGACGCGGCTAATCTGC 60.595 57.895 13.91 0.00 43.66 4.26
154 155 0.530650 ACATGGACGCGGCTAATCTG 60.531 55.000 13.91 3.28 0.00 2.90
155 156 1.037493 TACATGGACGCGGCTAATCT 58.963 50.000 13.91 0.00 0.00 2.40
156 157 2.080286 ATACATGGACGCGGCTAATC 57.920 50.000 13.91 0.00 0.00 1.75
157 158 2.353406 GGTATACATGGACGCGGCTAAT 60.353 50.000 13.91 2.73 0.00 1.73
158 159 1.000060 GGTATACATGGACGCGGCTAA 60.000 52.381 13.91 0.00 0.00 3.09
159 160 0.599558 GGTATACATGGACGCGGCTA 59.400 55.000 13.91 5.98 0.00 3.93
160 161 1.366366 GGTATACATGGACGCGGCT 59.634 57.895 13.91 0.00 0.00 5.52
161 162 1.666872 GGGTATACATGGACGCGGC 60.667 63.158 12.47 7.53 0.00 6.53
162 163 0.038526 GAGGGTATACATGGACGCGG 60.039 60.000 12.47 0.00 33.97 6.46
163 164 0.038526 GGAGGGTATACATGGACGCG 60.039 60.000 3.53 3.53 33.97 6.01
164 165 1.000955 CTGGAGGGTATACATGGACGC 59.999 57.143 5.01 0.56 0.00 5.19
165 166 1.618837 CCTGGAGGGTATACATGGACG 59.381 57.143 5.01 0.00 0.00 4.79
182 183 2.290641 TGGGCACTACCAAACATACCTG 60.291 50.000 0.00 0.00 42.05 4.00
183 184 1.989586 TGGGCACTACCAAACATACCT 59.010 47.619 0.00 0.00 42.05 3.08
237 241 9.231297 TCATAGGAATAAAAACCTTGACTGAAG 57.769 33.333 0.00 0.00 37.68 3.02
295 304 8.514330 TTAACTGTGTTCACTCCAGTTATTTT 57.486 30.769 16.62 2.47 45.77 1.82
299 308 6.229936 ACTTAACTGTGTTCACTCCAGTTA 57.770 37.500 13.96 13.96 45.06 2.24
320 329 6.049149 CGGGAAGATGTATGACATGTTAACT 58.951 40.000 7.22 0.00 41.41 2.24
321 330 5.277345 GCGGGAAGATGTATGACATGTTAAC 60.277 44.000 0.00 0.00 41.41 2.01
351 360 9.603921 AGACTTTGTTTTGATGAATGACATTTT 57.396 25.926 1.39 0.00 39.56 1.82
389 398 4.558470 CGCTGCACTTGGTATTTGTAATTG 59.442 41.667 0.00 0.00 0.00 2.32
390 399 4.217550 ACGCTGCACTTGGTATTTGTAATT 59.782 37.500 0.00 0.00 0.00 1.40
391 400 3.756434 ACGCTGCACTTGGTATTTGTAAT 59.244 39.130 0.00 0.00 0.00 1.89
392 401 3.142951 ACGCTGCACTTGGTATTTGTAA 58.857 40.909 0.00 0.00 0.00 2.41
395 404 3.000041 TCTACGCTGCACTTGGTATTTG 59.000 45.455 0.00 0.00 0.00 2.32
402 411 2.447887 CGGCTCTACGCTGCACTTG 61.448 63.158 0.00 0.00 38.36 3.16
410 419 0.522915 GTGTGTCTACGGCTCTACGC 60.523 60.000 0.00 0.00 37.37 4.42
411 420 0.098376 GGTGTGTCTACGGCTCTACG 59.902 60.000 0.00 0.00 40.31 3.51
412 421 1.171308 TGGTGTGTCTACGGCTCTAC 58.829 55.000 0.00 0.00 0.00 2.59
413 422 1.542915 GTTGGTGTGTCTACGGCTCTA 59.457 52.381 0.00 0.00 0.00 2.43
415 424 0.669625 GGTTGGTGTGTCTACGGCTC 60.670 60.000 0.00 0.00 0.00 4.70
418 427 0.105224 TGTGGTTGGTGTGTCTACGG 59.895 55.000 0.00 0.00 0.00 4.02
420 429 1.202440 TCGTGTGGTTGGTGTGTCTAC 60.202 52.381 0.00 0.00 0.00 2.59
422 431 0.250793 TTCGTGTGGTTGGTGTGTCT 59.749 50.000 0.00 0.00 0.00 3.41
423 432 0.375803 GTTCGTGTGGTTGGTGTGTC 59.624 55.000 0.00 0.00 0.00 3.67
424 433 1.363145 CGTTCGTGTGGTTGGTGTGT 61.363 55.000 0.00 0.00 0.00 3.72
425 434 1.350319 CGTTCGTGTGGTTGGTGTG 59.650 57.895 0.00 0.00 0.00 3.82
426 435 0.674269 AACGTTCGTGTGGTTGGTGT 60.674 50.000 0.00 0.00 0.00 4.16
427 436 0.027063 GAACGTTCGTGTGGTTGGTG 59.973 55.000 13.36 0.00 0.00 4.17
428 437 0.108041 AGAACGTTCGTGTGGTTGGT 60.108 50.000 21.87 0.00 0.00 3.67
429 438 0.580104 GAGAACGTTCGTGTGGTTGG 59.420 55.000 21.87 0.00 0.00 3.77
430 439 1.282817 TGAGAACGTTCGTGTGGTTG 58.717 50.000 21.87 0.00 0.00 3.77
438 447 5.229469 GGTAGACAATGTATGAGAACGTTCG 59.771 44.000 21.87 7.49 0.00 3.95
442 451 6.811665 TCTTTGGTAGACAATGTATGAGAACG 59.188 38.462 0.00 0.00 39.21 3.95
445 454 7.770433 CCAATCTTTGGTAGACAATGTATGAGA 59.230 37.037 0.00 0.00 45.93 3.27
463 472 8.917088 TCAATCTTCTTTGAAACTCCAATCTTT 58.083 29.630 0.00 0.00 32.82 2.52
467 476 8.413309 TGATCAATCTTCTTTGAAACTCCAAT 57.587 30.769 0.00 0.00 38.98 3.16
473 482 7.592903 GGTGACTTGATCAATCTTCTTTGAAAC 59.407 37.037 8.96 0.22 39.72 2.78
475 484 6.772233 TGGTGACTTGATCAATCTTCTTTGAA 59.228 34.615 8.96 0.00 39.72 2.69
476 485 6.298361 TGGTGACTTGATCAATCTTCTTTGA 58.702 36.000 8.96 0.00 39.72 2.69
477 486 6.564709 TGGTGACTTGATCAATCTTCTTTG 57.435 37.500 8.96 0.00 39.72 2.77
478 487 8.868522 TTATGGTGACTTGATCAATCTTCTTT 57.131 30.769 8.96 0.00 39.72 2.52
516 525 1.246649 AGGCGATGTTTGCATTGACA 58.753 45.000 3.78 0.00 45.17 3.58
517 526 2.352503 AAGGCGATGTTTGCATTGAC 57.647 45.000 0.00 0.00 43.47 3.18
518 527 2.352617 GGAAAGGCGATGTTTGCATTGA 60.353 45.455 0.00 0.00 38.49 2.57
519 528 1.994779 GGAAAGGCGATGTTTGCATTG 59.005 47.619 0.00 0.00 36.35 2.82
521 530 1.067635 GTGGAAAGGCGATGTTTGCAT 60.068 47.619 0.00 0.00 37.53 3.96
522 531 0.313672 GTGGAAAGGCGATGTTTGCA 59.686 50.000 0.00 0.00 33.39 4.08
524 533 1.879380 TCAGTGGAAAGGCGATGTTTG 59.121 47.619 0.00 0.00 0.00 2.93
527 536 2.270352 TTTCAGTGGAAAGGCGATGT 57.730 45.000 0.00 0.00 38.07 3.06
535 544 8.884124 AAGATGGATTATTCTTTCAGTGGAAA 57.116 30.769 0.00 0.00 40.60 3.13
536 545 9.973661 TTAAGATGGATTATTCTTTCAGTGGAA 57.026 29.630 0.00 0.00 0.00 3.53
537 546 9.396022 GTTAAGATGGATTATTCTTTCAGTGGA 57.604 33.333 0.00 0.00 0.00 4.02
538 547 9.177608 TGTTAAGATGGATTATTCTTTCAGTGG 57.822 33.333 0.00 0.00 0.00 4.00
566 575 9.911788 AATCAAATACTAGGTTTGACATCATCT 57.088 29.630 20.82 7.14 45.27 2.90
568 577 8.830580 CGAATCAAATACTAGGTTTGACATCAT 58.169 33.333 20.82 8.18 45.27 2.45
569 578 7.279981 CCGAATCAAATACTAGGTTTGACATCA 59.720 37.037 20.82 5.96 45.27 3.07
570 579 7.254795 CCCGAATCAAATACTAGGTTTGACATC 60.255 40.741 20.82 19.48 45.27 3.06
571 580 6.542370 CCCGAATCAAATACTAGGTTTGACAT 59.458 38.462 20.82 15.24 45.27 3.06
572 581 5.878116 CCCGAATCAAATACTAGGTTTGACA 59.122 40.000 20.82 7.04 45.27 3.58
573 582 6.036844 GTCCCGAATCAAATACTAGGTTTGAC 59.963 42.308 20.82 12.34 45.27 3.18
574 583 6.110707 GTCCCGAATCAAATACTAGGTTTGA 58.889 40.000 20.73 20.73 46.16 2.69
577 586 4.442472 CGGTCCCGAATCAAATACTAGGTT 60.442 45.833 0.00 0.00 42.83 3.50
592 601 0.040646 ATATCCATAGCCGGTCCCGA 59.959 55.000 7.42 0.00 42.83 5.14
594 603 2.835764 TGTTATATCCATAGCCGGTCCC 59.164 50.000 1.90 0.00 0.00 4.46
595 604 4.546829 TTGTTATATCCATAGCCGGTCC 57.453 45.455 1.90 0.00 0.00 4.46
599 608 4.119862 CCGGATTGTTATATCCATAGCCG 58.880 47.826 0.00 0.00 43.60 5.52
602 611 7.556844 AGTTAGCCGGATTGTTATATCCATAG 58.443 38.462 5.05 0.00 43.60 2.23
603 612 7.490657 AGTTAGCCGGATTGTTATATCCATA 57.509 36.000 5.05 0.00 43.60 2.74
604 613 6.374417 AGTTAGCCGGATTGTTATATCCAT 57.626 37.500 5.05 0.00 43.60 3.41
605 614 5.818678 AGTTAGCCGGATTGTTATATCCA 57.181 39.130 5.05 0.00 43.60 3.41
611 621 5.425196 AAAGGTAGTTAGCCGGATTGTTA 57.575 39.130 5.05 0.00 0.00 2.41
617 627 3.167485 TCAGAAAAGGTAGTTAGCCGGA 58.833 45.455 5.05 0.00 0.00 5.14
620 630 3.271729 GCCTCAGAAAAGGTAGTTAGCC 58.728 50.000 0.00 0.00 38.79 3.93
629 639 1.251251 CCAGGTTGCCTCAGAAAAGG 58.749 55.000 0.00 0.00 39.62 3.11
635 645 0.835941 AGATAGCCAGGTTGCCTCAG 59.164 55.000 0.00 0.00 0.00 3.35
649 659 8.916654 CGAATTAACATGTTACTAGGCAGATAG 58.083 37.037 17.85 1.89 0.00 2.08
652 662 5.522460 GCGAATTAACATGTTACTAGGCAGA 59.478 40.000 17.85 1.41 0.00 4.26
658 668 7.388224 TGGACTTTGCGAATTAACATGTTACTA 59.612 33.333 17.85 5.13 0.00 1.82
660 670 6.375377 TGGACTTTGCGAATTAACATGTTAC 58.625 36.000 17.85 6.97 0.00 2.50
704 714 6.072728 TCGTCACCAAAAATATGGACTTTGAG 60.073 38.462 0.00 0.00 43.54 3.02
707 717 6.039941 TGTTCGTCACCAAAAATATGGACTTT 59.960 34.615 0.00 0.00 43.54 2.66
721 731 4.443621 TGACTAAAACATGTTCGTCACCA 58.556 39.130 23.32 12.13 0.00 4.17
723 733 4.896238 CGTTGACTAAAACATGTTCGTCAC 59.104 41.667 25.34 20.55 31.86 3.67
724 734 4.025563 CCGTTGACTAAAACATGTTCGTCA 60.026 41.667 23.32 23.32 0.00 4.35
725 735 4.025480 ACCGTTGACTAAAACATGTTCGTC 60.025 41.667 12.39 17.48 0.00 4.20
727 737 4.210537 AGACCGTTGACTAAAACATGTTCG 59.789 41.667 12.39 8.22 0.00 3.95
730 740 4.699637 TCAGACCGTTGACTAAAACATGT 58.300 39.130 0.00 0.00 0.00 3.21
732 742 5.365619 AGTTCAGACCGTTGACTAAAACAT 58.634 37.500 0.00 0.00 0.00 2.71
733 743 4.761975 AGTTCAGACCGTTGACTAAAACA 58.238 39.130 0.00 0.00 0.00 2.83
734 744 5.729974 AAGTTCAGACCGTTGACTAAAAC 57.270 39.130 0.00 0.00 0.00 2.43
796 806 6.260050 TGGTAATTAATTGATCACGCTCTTCC 59.740 38.462 11.05 0.00 0.00 3.46
856 964 2.415491 GGCAATTTTGACCGTTAGGCTC 60.415 50.000 0.00 0.00 42.76 4.70
857 965 1.544246 GGCAATTTTGACCGTTAGGCT 59.456 47.619 0.00 0.00 42.76 4.58
858 966 1.990799 GGCAATTTTGACCGTTAGGC 58.009 50.000 0.00 0.00 42.76 3.93
883 991 1.372087 CCTTGGGCTGCACGATCTTC 61.372 60.000 0.50 0.00 0.00 2.87
884 992 1.377725 CCTTGGGCTGCACGATCTT 60.378 57.895 0.50 0.00 0.00 2.40
937 1045 0.393132 GGCGGAAAGGAAGGAGAAGG 60.393 60.000 0.00 0.00 0.00 3.46
1098 1208 1.714414 GTGCAGCAATCAGAGAGCG 59.286 57.895 0.00 0.00 0.00 5.03
1102 1212 1.366679 ACATCGTGCAGCAATCAGAG 58.633 50.000 0.00 0.00 0.00 3.35
1108 1218 1.523154 GGGGAAACATCGTGCAGCAA 61.523 55.000 0.00 0.00 0.00 3.91
1130 1240 4.321230 GGAGGAAATCAGCACAAAATTCGT 60.321 41.667 0.00 0.00 0.00 3.85
1140 1250 0.391661 GAGCACGGAGGAAATCAGCA 60.392 55.000 0.00 0.00 0.00 4.41
1214 1324 3.411418 CTCGTAGTCCATGCGCCGT 62.411 63.158 4.18 0.00 36.89 5.68
1467 1579 8.816144 GCAGTCATTCTGAAACATTAAACAAAA 58.184 29.630 0.00 0.00 46.27 2.44
1473 1585 8.506437 CAGTAAGCAGTCATTCTGAAACATTAA 58.494 33.333 0.00 0.00 46.27 1.40
1496 1612 2.649831 CACCAATTGGAGCAGCAGT 58.350 52.632 31.22 2.48 38.94 4.40
1508 1625 2.887151 AGTTCTAGGCAAGCACCAAT 57.113 45.000 0.00 0.00 0.00 3.16
1548 1673 1.306148 TCCACTACGACTGCGATAGG 58.694 55.000 0.00 0.00 41.64 2.57
1565 1690 4.001652 CCCCTTCGTCTCTAAAAAGTTCC 58.998 47.826 0.00 0.00 0.00 3.62
1589 1714 4.555709 ACAGCGGGTTGTTGCCGA 62.556 61.111 0.00 0.00 30.85 5.54
1590 1715 4.025401 GACAGCGGGTTGTTGCCG 62.025 66.667 0.00 0.00 30.85 5.69
1709 1835 5.353394 AGAACAACACTTGTGAGTAAGGA 57.647 39.130 7.83 0.00 44.59 3.36
1749 1875 0.528684 GCCGGGAAGAAGACTCATCG 60.529 60.000 2.18 0.00 0.00 3.84
1872 2003 1.989706 TAGGAAAGGTTTGTGCCACC 58.010 50.000 0.00 0.00 34.06 4.61
2061 2193 1.160137 AGAAGATGAAGCGTGGCAAC 58.840 50.000 0.00 0.00 0.00 4.17
2159 2291 3.209410 CAAACTAGGCTGCCCAATAGAG 58.791 50.000 16.57 5.96 0.00 2.43
2166 2298 3.676049 GCAAATTACAAACTAGGCTGCCC 60.676 47.826 16.57 0.00 0.00 5.36
2171 2303 6.094881 TGACATAGGCAAATTACAAACTAGGC 59.905 38.462 0.00 0.00 0.00 3.93
2189 2328 7.118825 CCCTGTATATGAAATGCACTGACATAG 59.881 40.741 0.00 0.00 0.00 2.23
2196 2335 5.242393 GCAATCCCTGTATATGAAATGCACT 59.758 40.000 0.00 0.00 0.00 4.40
2215 2354 7.010460 GCCAAGGAATTACAAACTTATGCAATC 59.990 37.037 0.00 0.00 0.00 2.67
2298 2440 6.003950 AGTTAGCAGAATTCAGTTGCCTTAA 58.996 36.000 12.99 5.53 38.58 1.85
2299 2441 5.560724 AGTTAGCAGAATTCAGTTGCCTTA 58.439 37.500 12.99 0.34 38.58 2.69
2300 2442 4.401925 AGTTAGCAGAATTCAGTTGCCTT 58.598 39.130 12.99 1.15 38.58 4.35
2301 2443 4.006319 GAGTTAGCAGAATTCAGTTGCCT 58.994 43.478 12.99 5.23 38.58 4.75
2302 2444 3.127721 GGAGTTAGCAGAATTCAGTTGCC 59.872 47.826 12.99 1.09 38.58 4.52
2303 2445 4.006319 AGGAGTTAGCAGAATTCAGTTGC 58.994 43.478 8.44 9.06 38.09 4.17
2304 2446 4.999950 ACAGGAGTTAGCAGAATTCAGTTG 59.000 41.667 8.44 0.00 0.00 3.16
2305 2447 5.234466 ACAGGAGTTAGCAGAATTCAGTT 57.766 39.130 8.44 0.00 0.00 3.16
2306 2448 4.899352 ACAGGAGTTAGCAGAATTCAGT 57.101 40.909 8.44 0.00 0.00 3.41
2307 2449 6.566197 AAAACAGGAGTTAGCAGAATTCAG 57.434 37.500 8.44 0.00 36.84 3.02
2308 2450 6.545666 TCAAAAACAGGAGTTAGCAGAATTCA 59.454 34.615 8.44 0.00 36.84 2.57
2323 2476 5.192327 AGCAACTTCAGATCAAAAACAGG 57.808 39.130 0.00 0.00 0.00 4.00
2333 2486 6.016276 ACCGAATGTTAAAAGCAACTTCAGAT 60.016 34.615 0.00 0.00 0.00 2.90
2423 2580 1.473080 GCTTGGCTGCACAAGGAAAAA 60.473 47.619 23.12 0.00 46.10 1.94
2592 2749 8.522830 GGGTTTTTCTTCACAGAAATGATATCA 58.477 33.333 8.10 8.10 46.36 2.15
2595 2752 7.831691 TGGGTTTTTCTTCACAGAAATGATA 57.168 32.000 0.00 0.00 46.36 2.15
2598 2755 7.254863 CCATTTGGGTTTTTCTTCACAGAAATG 60.255 37.037 0.00 0.00 46.36 2.32
2677 2834 2.166459 GGGAGATAAGGTTTGCTTTGCC 59.834 50.000 0.00 0.00 0.00 4.52
2698 2855 9.125906 GTATATCAGTTATAACACTAACGCAGG 57.874 37.037 17.65 0.00 36.83 4.85
2709 2866 9.503399 CAGGGGGAAAAGTATATCAGTTATAAC 57.497 37.037 7.57 7.57 0.00 1.89
2712 2870 7.349859 TGACAGGGGGAAAAGTATATCAGTTAT 59.650 37.037 0.00 0.00 0.00 1.89
2715 2873 5.036916 TGACAGGGGGAAAAGTATATCAGT 58.963 41.667 0.00 0.00 0.00 3.41
2718 2876 5.241728 GCATTGACAGGGGGAAAAGTATATC 59.758 44.000 0.00 0.00 0.00 1.63
2752 2910 7.230849 TGCCAAAGAACAATGACAAATATCT 57.769 32.000 0.00 0.00 0.00 1.98
2756 2914 5.856156 TCATGCCAAAGAACAATGACAAAT 58.144 33.333 0.00 0.00 0.00 2.32
2757 2915 5.068855 TCTCATGCCAAAGAACAATGACAAA 59.931 36.000 0.00 0.00 0.00 2.83
2774 2932 4.421948 CAGCAGGAAAAGAAATCTCATGC 58.578 43.478 0.01 0.01 0.00 4.06
2775 2933 4.461781 ACCAGCAGGAAAAGAAATCTCATG 59.538 41.667 0.35 0.00 38.69 3.07
2776 2934 4.461781 CACCAGCAGGAAAAGAAATCTCAT 59.538 41.667 0.35 0.00 38.69 2.90
2777 2935 3.822735 CACCAGCAGGAAAAGAAATCTCA 59.177 43.478 0.35 0.00 38.69 3.27
2778 2936 3.366781 GCACCAGCAGGAAAAGAAATCTC 60.367 47.826 0.35 0.00 41.58 2.75
2779 2937 2.560105 GCACCAGCAGGAAAAGAAATCT 59.440 45.455 0.35 0.00 41.58 2.40
2780 2938 2.560105 AGCACCAGCAGGAAAAGAAATC 59.440 45.455 0.35 0.00 45.49 2.17
2785 2943 2.229792 TGTAAGCACCAGCAGGAAAAG 58.770 47.619 0.35 0.00 45.49 2.27
2794 2952 7.988737 TGAAGATTCATTATTGTAAGCACCAG 58.011 34.615 0.00 0.00 31.01 4.00
2811 2969 3.600388 ACGTTCACCTGGATGAAGATTC 58.400 45.455 0.00 0.00 39.25 2.52
2830 2988 1.196354 ACGAGACCGAGTTCACTAACG 59.804 52.381 0.00 0.00 38.76 3.18
2904 3062 1.603455 CGCAGGGAAGGGCAAAAGA 60.603 57.895 0.00 0.00 0.00 2.52
2921 3079 2.866872 TGGAACATGGCTTAAGGCG 58.133 52.632 22.54 12.63 44.42 5.52
2985 3143 3.117512 AGCCATCATTCTCCGGGTTATTT 60.118 43.478 0.00 0.00 0.00 1.40
3059 3217 0.531753 TACAAACAGCGCACTCAGCA 60.532 50.000 11.47 0.00 46.13 4.41
3097 3255 3.223157 CGAACTGCAATACCGACAAAAC 58.777 45.455 0.00 0.00 0.00 2.43
3144 3302 6.013725 TGTTCCACCTTGACATTACACTAGAT 60.014 38.462 0.00 0.00 0.00 1.98
3187 3347 4.586841 GCTCAGATCTTACACCAGGATAGT 59.413 45.833 0.00 0.00 0.00 2.12
3188 3348 4.832266 AGCTCAGATCTTACACCAGGATAG 59.168 45.833 0.00 0.00 0.00 2.08
3191 3351 3.107402 AGCTCAGATCTTACACCAGGA 57.893 47.619 0.00 0.00 0.00 3.86
3258 3420 7.676807 GCAAACCCGAAACGTAATATGAACATA 60.677 37.037 0.00 0.00 0.00 2.29
3291 3453 3.698040 GGTACTAGAGGATGAACCGACAA 59.302 47.826 0.00 0.00 44.74 3.18
3307 3469 5.277779 GCAGCATGATATTTTTGCGGTACTA 60.278 40.000 0.00 0.00 39.69 1.82
3312 3474 2.792674 CTGCAGCATGATATTTTTGCGG 59.207 45.455 0.00 0.00 39.69 5.69
3314 3476 4.679662 AGACTGCAGCATGATATTTTTGC 58.320 39.130 15.27 0.00 39.69 3.68
3334 3496 2.300723 ACGGCACACACCAAATACTAGA 59.699 45.455 0.00 0.00 0.00 2.43
3335 3497 2.415168 CACGGCACACACCAAATACTAG 59.585 50.000 0.00 0.00 0.00 2.57
3336 3498 2.037381 TCACGGCACACACCAAATACTA 59.963 45.455 0.00 0.00 0.00 1.82
3337 3499 1.202710 TCACGGCACACACCAAATACT 60.203 47.619 0.00 0.00 0.00 2.12
3345 3507 2.591715 AAGGCTCACGGCACACAC 60.592 61.111 0.00 0.00 44.01 3.82
3353 3515 0.379669 GCATGGATTGAAGGCTCACG 59.620 55.000 0.00 0.00 0.00 4.35
3355 3517 2.519771 AAGCATGGATTGAAGGCTCA 57.480 45.000 0.00 0.00 32.84 4.26
3357 3519 4.450305 AGATAAGCATGGATTGAAGGCT 57.550 40.909 0.00 0.00 36.13 4.58
3358 3520 5.287226 CAAAGATAAGCATGGATTGAAGGC 58.713 41.667 0.00 0.00 0.00 4.35
3359 3521 5.595542 TCCAAAGATAAGCATGGATTGAAGG 59.404 40.000 0.00 0.00 37.05 3.46
3360 3522 6.704289 TCCAAAGATAAGCATGGATTGAAG 57.296 37.500 0.00 0.00 37.05 3.02
3379 3541 1.378382 CGCATGTGGGTGGATCCAA 60.378 57.895 18.20 0.00 38.72 3.53
3385 3547 3.271706 CTGTTGCGCATGTGGGTGG 62.272 63.158 12.75 0.00 0.00 4.61
3396 3558 2.403252 AGGGAGGAAATACTGTTGCG 57.597 50.000 0.00 0.00 0.00 4.85
3409 3571 1.561542 AGCAGGTTACATCAAGGGAGG 59.438 52.381 0.00 0.00 0.00 4.30
3410 3572 3.356529 AAGCAGGTTACATCAAGGGAG 57.643 47.619 0.00 0.00 0.00 4.30
3412 3574 4.331968 TGTAAAGCAGGTTACATCAAGGG 58.668 43.478 4.16 0.00 38.70 3.95
3413 3575 5.957842 TTGTAAAGCAGGTTACATCAAGG 57.042 39.130 8.05 0.00 42.15 3.61
3414 3576 8.081633 TCAAATTGTAAAGCAGGTTACATCAAG 58.918 33.333 8.05 2.22 42.15 3.02
3415 3577 7.946207 TCAAATTGTAAAGCAGGTTACATCAA 58.054 30.769 8.05 0.00 42.15 2.57
3416 3578 7.517614 TCAAATTGTAAAGCAGGTTACATCA 57.482 32.000 8.05 0.00 42.15 3.07
3417 3579 6.528072 GCTCAAATTGTAAAGCAGGTTACATC 59.472 38.462 8.05 0.00 42.15 3.06
3418 3580 6.209391 AGCTCAAATTGTAAAGCAGGTTACAT 59.791 34.615 7.70 0.00 42.15 2.29
3419 3581 5.534654 AGCTCAAATTGTAAAGCAGGTTACA 59.465 36.000 7.70 4.16 41.18 2.41
3420 3582 6.013842 AGCTCAAATTGTAAAGCAGGTTAC 57.986 37.500 7.70 0.00 37.22 2.50
3421 3583 7.938140 ATAGCTCAAATTGTAAAGCAGGTTA 57.062 32.000 7.70 0.00 37.22 2.85
3422 3584 6.840780 ATAGCTCAAATTGTAAAGCAGGTT 57.159 33.333 7.70 0.00 37.22 3.50
3423 3585 7.938140 TTATAGCTCAAATTGTAAAGCAGGT 57.062 32.000 7.70 0.00 37.22 4.00
3424 3586 9.294030 CTTTTATAGCTCAAATTGTAAAGCAGG 57.706 33.333 7.70 0.00 37.22 4.85
3425 3587 9.846248 ACTTTTATAGCTCAAATTGTAAAGCAG 57.154 29.630 7.70 0.00 37.22 4.24
3451 3613 9.628746 GCGAACTTTTATTTAAGGATTTGGTTA 57.371 29.630 0.00 0.00 0.00 2.85
3460 3622 8.699749 CAAAAGAAGGCGAACTTTTATTTAAGG 58.300 33.333 14.80 3.21 42.08 2.69
3465 3627 6.399639 TCCAAAAGAAGGCGAACTTTTATT 57.600 33.333 14.80 0.00 42.08 1.40
3474 3636 3.634397 AGATGATCCAAAAGAAGGCGA 57.366 42.857 0.00 0.00 0.00 5.54
3475 3637 3.441572 ACAAGATGATCCAAAAGAAGGCG 59.558 43.478 0.00 0.00 0.00 5.52
3476 3638 5.397142 AACAAGATGATCCAAAAGAAGGC 57.603 39.130 0.00 0.00 0.00 4.35
3548 3710 8.932610 ACAGTGGATATATCTTGAGTGAAGAAT 58.067 33.333 12.42 0.00 44.11 2.40
3571 3733 5.627499 TGGCAAAGATTTAGCTTGTACAG 57.373 39.130 0.00 0.00 0.00 2.74
3573 3735 7.196331 CCTTATGGCAAAGATTTAGCTTGTAC 58.804 38.462 0.00 0.00 0.00 2.90
3598 3760 1.173913 AGAAGTAATTTGGGCCACGC 58.826 50.000 5.23 0.00 0.00 5.34
3599 3761 2.817258 TCAAGAAGTAATTTGGGCCACG 59.183 45.455 5.23 0.00 0.00 4.94
3602 3764 9.178758 CCTATATATCAAGAAGTAATTTGGGCC 57.821 37.037 0.00 0.00 0.00 5.80
3604 3766 9.739276 TGCCTATATATCAAGAAGTAATTTGGG 57.261 33.333 0.00 0.00 0.00 4.12
3655 3817 4.846779 TGAAAAGAGTAAATGGTGTGCC 57.153 40.909 0.00 0.00 0.00 5.01
3656 3818 6.363357 GTGAATGAAAAGAGTAAATGGTGTGC 59.637 38.462 0.00 0.00 0.00 4.57
3657 3819 7.424803 TGTGAATGAAAAGAGTAAATGGTGTG 58.575 34.615 0.00 0.00 0.00 3.82
3658 3820 7.581213 TGTGAATGAAAAGAGTAAATGGTGT 57.419 32.000 0.00 0.00 0.00 4.16
3659 3821 8.918658 CATTGTGAATGAAAAGAGTAAATGGTG 58.081 33.333 0.00 0.00 41.46 4.17
3660 3822 8.641541 ACATTGTGAATGAAAAGAGTAAATGGT 58.358 29.630 3.35 0.00 41.46 3.55
3667 3829 9.520204 CAACTTTACATTGTGAATGAAAAGAGT 57.480 29.630 12.24 0.00 41.46 3.24
3668 3830 8.482429 GCAACTTTACATTGTGAATGAAAAGAG 58.518 33.333 12.24 7.12 41.46 2.85
3669 3831 7.437862 GGCAACTTTACATTGTGAATGAAAAGA 59.562 33.333 12.24 0.00 41.46 2.52
3676 3838 5.528043 TGTGGCAACTTTACATTGTGAAT 57.472 34.783 0.00 0.00 37.61 2.57
3704 3866 4.223700 CCATTAGGCCATGTCTATAGAGCA 59.776 45.833 5.01 5.18 0.00 4.26
3705 3867 4.383552 CCCATTAGGCCATGTCTATAGAGC 60.384 50.000 5.01 2.85 0.00 4.09
3706 3868 5.026121 TCCCATTAGGCCATGTCTATAGAG 58.974 45.833 5.01 0.00 34.51 2.43
3707 3869 5.023514 TCCCATTAGGCCATGTCTATAGA 57.976 43.478 5.01 0.00 34.51 1.98
3708 3870 5.762179 TTCCCATTAGGCCATGTCTATAG 57.238 43.478 5.01 0.00 34.51 1.31
3709 3871 5.610982 AGTTTCCCATTAGGCCATGTCTATA 59.389 40.000 5.01 0.00 34.51 1.31
3710 3872 4.416848 AGTTTCCCATTAGGCCATGTCTAT 59.583 41.667 5.01 0.00 34.51 1.98
3711 3873 3.785887 AGTTTCCCATTAGGCCATGTCTA 59.214 43.478 5.01 0.00 34.51 2.59
3712 3874 2.582636 AGTTTCCCATTAGGCCATGTCT 59.417 45.455 5.01 0.00 34.51 3.41
3713 3875 2.689983 CAGTTTCCCATTAGGCCATGTC 59.310 50.000 5.01 0.00 34.51 3.06
3714 3876 2.624029 CCAGTTTCCCATTAGGCCATGT 60.624 50.000 5.01 0.00 34.51 3.21
3715 3877 2.034124 CCAGTTTCCCATTAGGCCATG 58.966 52.381 5.01 0.00 34.51 3.66
3716 3878 1.645919 ACCAGTTTCCCATTAGGCCAT 59.354 47.619 5.01 0.00 34.51 4.40
3717 3879 1.080638 ACCAGTTTCCCATTAGGCCA 58.919 50.000 5.01 0.00 34.51 5.36
3770 3975 8.511321 ACGCATGTTTAACTTTGATAAAGATCA 58.489 29.630 8.18 0.00 41.02 2.92
3772 3977 7.273381 GCACGCATGTTTAACTTTGATAAAGAT 59.727 33.333 8.18 0.00 41.02 2.40
3785 3990 1.503294 TGTCTCGCACGCATGTTTAA 58.497 45.000 0.00 0.00 0.00 1.52
3787 3992 1.720805 TATGTCTCGCACGCATGTTT 58.279 45.000 0.00 0.00 0.00 2.83
3788 3993 1.720805 TTATGTCTCGCACGCATGTT 58.279 45.000 0.00 0.00 0.00 2.71
3795 4000 2.094417 GGAAGCAGTTTATGTCTCGCAC 59.906 50.000 0.00 0.00 0.00 5.34
3803 4008 8.180267 CAGATTTACTCAAGGAAGCAGTTTATG 58.820 37.037 0.00 0.00 0.00 1.90
3804 4009 7.885399 ACAGATTTACTCAAGGAAGCAGTTTAT 59.115 33.333 0.00 0.00 0.00 1.40
3848 4053 8.615211 TGTTTATTTCCGAGATCATTTCAGATG 58.385 33.333 0.00 0.00 0.00 2.90
3858 4063 5.875359 AGTTCAGGTGTTTATTTCCGAGATC 59.125 40.000 0.00 0.00 0.00 2.75
3939 4144 4.574013 ACACCAAACGTACCGATTTTTACA 59.426 37.500 0.00 0.00 0.00 2.41
3940 4145 5.094429 ACACCAAACGTACCGATTTTTAC 57.906 39.130 0.00 0.00 0.00 2.01
3941 4146 5.747951 AACACCAAACGTACCGATTTTTA 57.252 34.783 0.00 0.00 0.00 1.52
3958 4168 1.072331 TCTCTCTGGGAAGCAAACACC 59.928 52.381 0.00 0.00 0.00 4.16
4007 4220 8.922058 ATTTTCATTTGCTGACATCTATCAAC 57.078 30.769 0.00 0.00 32.17 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.