Multiple sequence alignment - TraesCS2D01G113400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G113400 chr2D 100.000 6326 0 0 1 6326 62623301 62616976 0.000000e+00 11683.0
1 TraesCS2D01G113400 chr2D 98.958 384 4 0 5943 6326 132697289 132697672 0.000000e+00 688.0
2 TraesCS2D01G113400 chr2D 87.845 181 19 3 2589 2767 606101684 606101863 6.430000e-50 209.0
3 TraesCS2D01G113400 chr2B 94.441 2878 111 18 3098 5944 98310099 98307240 0.000000e+00 4383.0
4 TraesCS2D01G113400 chr2B 88.661 1270 73 20 390 1604 98312406 98311153 0.000000e+00 1482.0
5 TraesCS2D01G113400 chr2B 94.967 914 44 2 1673 2586 98311003 98310092 0.000000e+00 1432.0
6 TraesCS2D01G113400 chr2B 87.838 222 24 3 168 386 98313277 98313056 2.260000e-64 257.0
7 TraesCS2D01G113400 chr2B 95.714 70 2 1 1607 1675 98311118 98311049 1.860000e-20 111.0
8 TraesCS2D01G113400 chr2A 98.403 1753 26 2 3098 4849 63801739 63799988 0.000000e+00 3081.0
9 TraesCS2D01G113400 chr2A 94.107 1120 53 7 4832 5944 63799634 63798521 0.000000e+00 1690.0
10 TraesCS2D01G113400 chr2A 96.778 900 25 3 1689 2586 63802629 63801732 0.000000e+00 1498.0
11 TraesCS2D01G113400 chr2A 90.593 978 51 13 655 1604 63803758 63802794 0.000000e+00 1258.0
12 TraesCS2D01G113400 chr2A 89.091 165 18 0 4 168 63805196 63805032 8.310000e-49 206.0
13 TraesCS2D01G113400 chr1A 93.204 515 27 7 2587 3097 143814639 143814129 0.000000e+00 750.0
14 TraesCS2D01G113400 chr1A 92.751 469 26 7 2633 3097 143752986 143752522 0.000000e+00 671.0
15 TraesCS2D01G113400 chr1A 89.753 283 16 10 2818 3097 391672466 391672738 3.630000e-92 350.0
16 TraesCS2D01G113400 chr1A 91.026 156 10 4 2587 2738 31185837 31185682 2.310000e-49 207.0
17 TraesCS2D01G113400 chr3A 95.573 384 16 1 5943 6326 169844070 169843688 1.170000e-171 614.0
18 TraesCS2D01G113400 chr1B 95.349 387 15 2 5943 6326 21430163 21429777 4.190000e-171 612.0
19 TraesCS2D01G113400 chr1B 88.398 181 20 1 2584 2763 593233737 593233917 3.840000e-52 217.0
20 TraesCS2D01G113400 chr1B 87.730 163 16 3 2607 2767 49655722 49655882 3.010000e-43 187.0
21 TraesCS2D01G113400 chr3B 95.515 379 17 0 5948 6326 777008735 777009113 1.950000e-169 606.0
22 TraesCS2D01G113400 chr3B 92.875 393 26 2 5934 6326 598996871 598997261 2.560000e-158 569.0
23 TraesCS2D01G113400 chr3B 88.043 184 18 3 2587 2767 192042806 192042624 1.380000e-51 215.0
24 TraesCS2D01G113400 chr1D 95.052 384 19 0 5943 6326 480955500 480955883 7.020000e-169 604.0
25 TraesCS2D01G113400 chr7D 94.010 384 22 1 5943 6326 104747080 104746698 1.180000e-161 580.0
26 TraesCS2D01G113400 chr7D 88.112 286 24 8 2818 3099 440572510 440572231 1.310000e-86 331.0
27 TraesCS2D01G113400 chr4D 93.750 384 23 1 5943 6326 385713557 385713939 5.500000e-160 575.0
28 TraesCS2D01G113400 chr4D 86.207 87 11 1 4944 5030 293138704 293138619 6.750000e-15 93.5
29 TraesCS2D01G113400 chr5D 93.229 384 25 1 5943 6326 158805728 158806110 1.190000e-156 564.0
30 TraesCS2D01G113400 chr4A 96.610 236 8 0 2587 2822 705233782 705233547 5.950000e-105 392.0
31 TraesCS2D01G113400 chr4A 89.547 287 19 6 2813 3096 705233520 705233242 2.810000e-93 353.0
32 TraesCS2D01G113400 chr4A 85.057 87 12 1 4944 5030 321194801 321194886 3.140000e-13 87.9
33 TraesCS2D01G113400 chr7B 88.380 284 25 6 2818 3099 458353973 458353696 1.020000e-87 335.0
34 TraesCS2D01G113400 chr7B 86.905 168 22 0 2587 2754 328181537 328181370 8.370000e-44 189.0
35 TraesCS2D01G113400 chr6A 87.342 237 10 12 2865 3095 62129840 62130062 2.930000e-63 254.0
36 TraesCS2D01G113400 chr6A 82.418 91 16 0 2284 2374 617539982 617540072 5.260000e-11 80.5
37 TraesCS2D01G113400 chr5A 88.406 138 9 6 2930 3064 3433447 3433314 6.560000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G113400 chr2D 62616976 62623301 6325 True 11683.0 11683 100.0000 1 6326 1 chr2D.!!$R1 6325
1 TraesCS2D01G113400 chr2B 98307240 98313277 6037 True 1533.0 4383 92.3242 168 5944 5 chr2B.!!$R1 5776
2 TraesCS2D01G113400 chr2A 63798521 63805196 6675 True 1546.6 3081 93.7944 4 5944 5 chr2A.!!$R1 5940
3 TraesCS2D01G113400 chr1A 143814129 143814639 510 True 750.0 750 93.2040 2587 3097 1 chr1A.!!$R3 510
4 TraesCS2D01G113400 chr4A 705233242 705233782 540 True 372.5 392 93.0785 2587 3096 2 chr4A.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.625849 AGTAGGGCTTGGTTGGGATG 59.374 55.0 0.00 0.00 0.00 3.51 F
436 1396 0.752743 ATTGACGATGTGGGGGCATG 60.753 55.0 0.00 0.00 0.00 4.06 F
959 2427 0.892063 GCTAGCTAGGATTCCTCGGG 59.108 60.0 22.10 2.36 34.61 5.14 F
2523 4101 0.106268 TTTCTGCCTTGGTTGCTGGA 60.106 50.0 0.00 0.00 0.00 3.86 F
2916 4537 0.108804 AGTCGTGACAGCCCAATACG 60.109 55.0 2.44 0.00 36.20 3.06 F
2917 4538 0.389426 GTCGTGACAGCCCAATACGT 60.389 55.0 0.00 0.00 36.28 3.57 F
2938 4559 0.401395 TCCCCCTGTGGTATCCCATC 60.401 60.0 0.00 0.00 44.35 3.51 F
4686 6334 0.818040 GACACAAGTTCTTGGCGGGT 60.818 55.0 15.51 8.63 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 2974 0.392193 CACCTCCTCCAGTGTGATGC 60.392 60.000 0.00 0.00 0.00 3.91 R
1661 3187 1.275010 TGCTACAGGTGAATTCGCTCA 59.725 47.619 18.02 5.13 0.00 4.26 R
2808 4386 0.249280 TCACGCACGACACTTGACAT 60.249 50.000 0.00 0.00 0.00 3.06 R
4313 5948 4.038042 TGAATGACACGGATAGATCAGTCC 59.962 45.833 6.38 6.38 34.87 3.85 R
4911 6930 4.503741 AGTTCCACATCAAACAAATCCG 57.496 40.909 0.00 0.00 0.00 4.18 R
5054 7075 8.451908 ACAGAACCCTAATCAAGCATATTTAC 57.548 34.615 0.00 0.00 0.00 2.01 R
5139 7160 7.847564 GTCTTCAATTTGAACTTGATTTTGCAC 59.152 33.333 7.74 0.00 32.21 4.57 R
6075 8111 0.030101 CTCTCTTCGGGTCGAGCATC 59.970 60.000 17.59 0.00 37.14 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.862209 AGAATTTTGCGCCAAGTTAATATCA 58.138 32.000 4.18 0.00 0.00 2.15
27 28 4.566545 TTGCGCCAAGTTAATATCATGG 57.433 40.909 4.18 0.00 0.00 3.66
36 37 7.286775 GCCAAGTTAATATCATGGAAACCCTAA 59.713 37.037 0.00 0.00 32.82 2.69
86 87 0.625849 AGTAGGGCTTGGTTGGGATG 59.374 55.000 0.00 0.00 0.00 3.51
115 116 7.392953 TGTTTCCACATTATATGAAGCTGACAA 59.607 33.333 0.00 0.00 0.00 3.18
129 130 3.072476 AGCTGACAAACAACCCTAAGCTA 59.928 43.478 0.00 0.00 37.96 3.32
130 131 4.010349 GCTGACAAACAACCCTAAGCTAT 58.990 43.478 0.00 0.00 0.00 2.97
131 132 5.045869 AGCTGACAAACAACCCTAAGCTATA 60.046 40.000 0.00 0.00 37.96 1.31
133 134 6.403309 GCTGACAAACAACCCTAAGCTATAAC 60.403 42.308 0.00 0.00 0.00 1.89
163 164 3.702045 CAGTCCACTAGAAGAACCCTAGG 59.298 52.174 0.06 0.06 38.28 3.02
224 534 6.472887 TGTCTGGTTCTTCCTTAAATACCAG 58.527 40.000 11.79 11.79 43.88 4.00
238 548 7.309744 CCTTAAATACCAGGAGATTGTGCAAAA 60.310 37.037 0.00 0.00 30.81 2.44
320 631 4.350368 TGTTGATGAGGTTAGAGTTGCA 57.650 40.909 0.00 0.00 0.00 4.08
336 647 1.495069 GCAAGAGCAGAGTCGTTGC 59.505 57.895 0.00 0.00 41.58 4.17
340 651 1.301716 GAGCAGAGTCGTTGCCCAA 60.302 57.895 0.96 0.00 42.48 4.12
358 670 3.660111 GTGGGAGCAACACGGTGC 61.660 66.667 8.30 0.00 45.28 5.01
367 679 0.950836 CAACACGGTGCCAGAATGAA 59.049 50.000 8.30 0.00 39.69 2.57
400 1360 3.250762 TCGTTATAGTGATTACGGTCCCG 59.749 47.826 3.76 3.76 38.35 5.14
422 1382 2.766313 TGAGGCGTATGGCATATTGAC 58.234 47.619 10.92 8.85 46.16 3.18
425 1385 2.028112 AGGCGTATGGCATATTGACGAT 60.028 45.455 21.08 8.32 46.16 3.73
431 1391 1.238439 GGCATATTGACGATGTGGGG 58.762 55.000 1.99 0.00 0.00 4.96
436 1396 0.752743 ATTGACGATGTGGGGGCATG 60.753 55.000 0.00 0.00 0.00 4.06
439 1399 1.978455 GACGATGTGGGGGCATGGTA 61.978 60.000 0.00 0.00 37.80 3.25
493 1453 1.349688 AGGGTTTATGGTGTTCGCTGA 59.650 47.619 0.00 0.00 0.00 4.26
498 1458 2.442212 TATGGTGTTCGCTGAAACGA 57.558 45.000 0.00 0.00 41.04 3.85
538 1498 3.500680 TCGTTAGACATCCAAACTTTGCC 59.499 43.478 0.00 0.00 0.00 4.52
577 1560 6.665474 TTAGACTCTGTGAATAGTCGAGAC 57.335 41.667 1.38 0.00 45.47 3.36
580 1563 3.127895 ACTCTGTGAATAGTCGAGACTGC 59.872 47.826 15.36 5.96 42.52 4.40
606 1589 1.024046 AACATGTGATAGCGCCGCAA 61.024 50.000 13.36 0.00 0.00 4.85
625 1612 5.732647 CCGCAAAAATGTAGTCACTTATTCG 59.267 40.000 0.00 0.00 0.00 3.34
626 1613 5.225129 CGCAAAAATGTAGTCACTTATTCGC 59.775 40.000 0.00 0.00 0.00 4.70
650 1637 3.623906 AGATGGAGTGACTTGGACATG 57.376 47.619 0.00 0.00 0.00 3.21
663 2122 4.940046 ACTTGGACATGATGATGAGTGAAC 59.060 41.667 0.00 0.00 33.36 3.18
746 2206 3.352648 CCTAAAACCCATCACACCGATT 58.647 45.455 0.00 0.00 29.21 3.34
750 2215 6.768861 CCTAAAACCCATCACACCGATTATTA 59.231 38.462 0.00 0.00 29.21 0.98
753 2218 3.074412 CCCATCACACCGATTATTAGGC 58.926 50.000 0.00 0.00 29.21 3.93
759 2224 3.375922 CACACCGATTATTAGGCCGTTTT 59.624 43.478 0.00 0.00 0.00 2.43
856 2324 4.095782 CGTATCGTGTCCCCAATTTCAAAT 59.904 41.667 0.00 0.00 0.00 2.32
858 2326 3.491342 TCGTGTCCCCAATTTCAAATCA 58.509 40.909 0.00 0.00 0.00 2.57
892 2360 2.433664 CGTCCGCCGCCTAAAACT 60.434 61.111 0.00 0.00 0.00 2.66
959 2427 0.892063 GCTAGCTAGGATTCCTCGGG 59.108 60.000 22.10 2.36 34.61 5.14
1003 2472 1.678635 CCAACGGCACATCCCATGT 60.679 57.895 0.00 0.00 46.22 3.21
1421 2911 1.271102 GCGGGAGGTGATAGATCTCAC 59.729 57.143 0.00 2.06 43.90 3.51
1484 2974 0.940126 GGTATTGGCGATGTGAGCAG 59.060 55.000 0.00 0.00 36.08 4.24
1506 2996 2.930562 ACACTGGAGGAGGTGCCC 60.931 66.667 0.00 0.00 36.99 5.36
1530 3020 2.693591 CGATAGTCCCAAAGAGGTAGCA 59.306 50.000 0.00 0.00 34.66 3.49
1598 3088 7.503566 AGTTTGCTGATATGCATAGTAAATGGT 59.496 33.333 12.79 0.00 42.96 3.55
1600 3090 8.916628 TTGCTGATATGCATAGTAAATGGTTA 57.083 30.769 12.79 0.00 42.96 2.85
1602 3092 9.519191 TGCTGATATGCATAGTAAATGGTTAAT 57.481 29.630 12.79 0.00 38.12 1.40
1603 3093 9.778993 GCTGATATGCATAGTAAATGGTTAATG 57.221 33.333 12.79 0.00 0.00 1.90
1661 3187 5.534654 TGGCTGTTTATGAACTTGTTAGCTT 59.465 36.000 0.00 0.00 36.70 3.74
1676 3202 3.984292 GCTTGAGCGAATTCACCTG 57.016 52.632 6.22 0.00 0.00 4.00
1679 3205 2.349886 GCTTGAGCGAATTCACCTGTAG 59.650 50.000 6.22 2.47 0.00 2.74
1680 3206 2.010145 TGAGCGAATTCACCTGTAGC 57.990 50.000 6.22 0.00 0.00 3.58
1682 3208 2.289382 TGAGCGAATTCACCTGTAGCAA 60.289 45.455 6.22 0.00 0.00 3.91
1683 3209 2.076863 AGCGAATTCACCTGTAGCAAC 58.923 47.619 6.22 0.00 0.00 4.17
1684 3210 2.076863 GCGAATTCACCTGTAGCAACT 58.923 47.619 6.22 0.00 0.00 3.16
1685 3211 3.056107 AGCGAATTCACCTGTAGCAACTA 60.056 43.478 6.22 0.00 0.00 2.24
1686 3212 3.062234 GCGAATTCACCTGTAGCAACTAC 59.938 47.826 6.22 0.00 37.46 2.73
1698 3272 6.641314 CCTGTAGCAACTACGTATGATTTAGG 59.359 42.308 0.00 0.00 39.58 2.69
1836 3410 4.576463 AGCCTGTTAGTTGTGACTCTTTTG 59.424 41.667 0.00 0.00 37.33 2.44
1838 3412 5.239525 GCCTGTTAGTTGTGACTCTTTTGAT 59.760 40.000 0.00 0.00 37.33 2.57
2051 3625 8.531146 CACCATTAAACATTAACCATCCTCTTT 58.469 33.333 0.00 0.00 0.00 2.52
2149 3723 1.310904 GCCTCGTGGTTGGTTAAACA 58.689 50.000 5.26 0.00 40.86 2.83
2191 3765 4.350816 TGGAAGAACCTCCTTCATCAAAGA 59.649 41.667 0.00 0.00 43.19 2.52
2192 3766 5.163099 TGGAAGAACCTCCTTCATCAAAGAA 60.163 40.000 0.00 0.00 43.19 2.52
2247 3823 6.942005 TGTTCCATTCTTTCTTAGCTTGATGA 59.058 34.615 0.00 0.00 0.00 2.92
2251 3827 5.475273 TTCTTTCTTAGCTTGATGATGCG 57.525 39.130 0.00 0.00 0.00 4.73
2523 4101 0.106268 TTTCTGCCTTGGTTGCTGGA 60.106 50.000 0.00 0.00 0.00 3.86
2808 4386 0.662619 CACCGAAGAAGTTGCTGCAA 59.337 50.000 11.69 11.69 0.00 4.08
2810 4388 1.267806 ACCGAAGAAGTTGCTGCAATG 59.732 47.619 19.11 3.16 0.00 2.82
2856 4472 8.788813 GTTTGTTTTAGCGATCAGAATTGTATG 58.211 33.333 0.00 0.00 0.00 2.39
2863 4479 3.183172 CGATCAGAATTGTATGTGAGGCG 59.817 47.826 0.00 0.00 0.00 5.52
2903 4520 0.951040 GGGCTCTGGTTCAAGTCGTG 60.951 60.000 0.00 0.00 0.00 4.35
2915 4536 1.732259 CAAGTCGTGACAGCCCAATAC 59.268 52.381 2.44 0.00 0.00 1.89
2916 4537 0.108804 AGTCGTGACAGCCCAATACG 60.109 55.000 2.44 0.00 36.20 3.06
2917 4538 0.389426 GTCGTGACAGCCCAATACGT 60.389 55.000 0.00 0.00 36.28 3.57
2918 4539 1.135315 GTCGTGACAGCCCAATACGTA 60.135 52.381 0.00 0.00 36.28 3.57
2919 4540 1.752498 TCGTGACAGCCCAATACGTAT 59.248 47.619 1.14 1.14 36.28 3.06
2920 4541 2.124903 CGTGACAGCCCAATACGTATC 58.875 52.381 8.86 0.00 0.00 2.24
2921 4542 2.480845 GTGACAGCCCAATACGTATCC 58.519 52.381 8.86 0.00 0.00 2.59
2938 4559 0.401395 TCCCCCTGTGGTATCCCATC 60.401 60.000 0.00 0.00 44.35 3.51
3097 4720 1.512926 CCGTATCCCTGCAACATAGC 58.487 55.000 0.00 0.00 0.00 2.97
3098 4721 1.070758 CCGTATCCCTGCAACATAGCT 59.929 52.381 0.00 0.00 34.99 3.32
3099 4722 2.138320 CGTATCCCTGCAACATAGCTG 58.862 52.381 0.00 0.00 34.99 4.24
3285 4915 5.401376 GGCTTGTTAACTCGGTTTGAAATTC 59.599 40.000 7.22 0.00 0.00 2.17
3495 5126 3.104512 CACCCCTACCTACATGACTTGA 58.895 50.000 0.00 0.00 0.00 3.02
3513 5147 3.737559 TGATCTGTTTACCCATGCCTT 57.262 42.857 0.00 0.00 0.00 4.35
3571 5206 6.712095 AGTACAATACATATGGATGCCTGTTG 59.288 38.462 8.66 2.74 36.43 3.33
3616 5251 2.163390 CATCCAGCACGAGTCTGCG 61.163 63.158 8.35 0.00 42.42 5.18
3677 5312 8.438676 ACTATGTGTTAATATCCTTGCTTGTC 57.561 34.615 0.00 0.00 0.00 3.18
3890 5525 6.362248 TCCACTTTTCTTGTTACTAGCCTTT 58.638 36.000 0.00 0.00 0.00 3.11
4084 5719 6.926313 ACTGGTAGACTTAACTGATGTCTTC 58.074 40.000 0.00 0.00 41.52 2.87
4133 5768 8.475639 ACTGATGTCTACGAATAAAGTACCATT 58.524 33.333 0.00 0.00 0.00 3.16
4686 6334 0.818040 GACACAAGTTCTTGGCGGGT 60.818 55.000 15.51 8.63 0.00 5.28
4781 6429 6.651225 AGCTGTGACTTAAGGAATAACAGTTC 59.349 38.462 18.30 9.13 0.00 3.01
5054 7075 4.302455 ACATCTTCTGACTGTCAACTTCG 58.698 43.478 12.16 0.00 0.00 3.79
5285 7306 9.247861 GCAGGAACATATGGAATATTTTAGGAT 57.752 33.333 7.80 0.00 37.44 3.24
5334 7355 7.936301 AGATTAAGAGCTGATTAAGAATGTCCC 59.064 37.037 0.00 0.00 0.00 4.46
5352 7373 3.004171 TCCCGTTTATGACCAACATTCG 58.996 45.455 0.00 0.00 40.07 3.34
5434 7455 2.731976 CGGCTGTCAACAACTAGAGTTC 59.268 50.000 0.00 0.00 35.83 3.01
5456 7477 6.902771 TCTGGTGATTATAAGCTCTAGGAC 57.097 41.667 13.81 0.00 0.00 3.85
5578 7599 6.326843 AGGGAAGACAGTAAGACAAGTTTAGT 59.673 38.462 0.00 0.00 0.00 2.24
5599 7620 0.174617 GTAGAGTGCTCTGCTCACCC 59.825 60.000 11.63 0.00 40.71 4.61
5609 7640 0.602106 CTGCTCACCCCGATAGCATG 60.602 60.000 0.00 0.00 44.69 4.06
5610 7641 1.337384 TGCTCACCCCGATAGCATGT 61.337 55.000 0.00 0.00 41.15 3.21
5611 7642 0.679505 GCTCACCCCGATAGCATGTA 59.320 55.000 0.00 0.00 36.26 2.29
5736 7770 3.496130 CAGTGAGGTTCTGTGATCACAAC 59.504 47.826 27.63 22.68 43.55 3.32
5760 7794 7.523219 ACGTTTATCTTGATCGTTATTGCAAA 58.477 30.769 1.71 0.00 0.00 3.68
5817 7851 6.741992 AAAAGAACATCACGCATCTCAATA 57.258 33.333 0.00 0.00 0.00 1.90
5905 7939 6.098017 CGAGTAACTTAACCCTAGTTTCTGG 58.902 44.000 0.00 0.00 34.63 3.86
5944 7980 8.715191 TTTGTGTGATGCTAGTTTTTGAATTT 57.285 26.923 0.00 0.00 0.00 1.82
5945 7981 8.715191 TTGTGTGATGCTAGTTTTTGAATTTT 57.285 26.923 0.00 0.00 0.00 1.82
5946 7982 8.715191 TGTGTGATGCTAGTTTTTGAATTTTT 57.285 26.923 0.00 0.00 0.00 1.94
5964 8000 4.742438 TTTTTCTCGAATACGCAAAGCT 57.258 36.364 0.00 0.00 39.58 3.74
5965 8001 4.742438 TTTTCTCGAATACGCAAAGCTT 57.258 36.364 0.00 0.00 39.58 3.74
5966 8002 3.722555 TTCTCGAATACGCAAAGCTTG 57.277 42.857 0.00 0.00 39.58 4.01
5978 8014 2.866198 CAAAGCTTGCGTATCATTGCA 58.134 42.857 0.00 0.00 39.81 4.08
5979 8015 3.441163 CAAAGCTTGCGTATCATTGCAT 58.559 40.909 0.00 0.00 41.42 3.96
5980 8016 3.788333 AAGCTTGCGTATCATTGCATT 57.212 38.095 0.00 0.00 41.42 3.56
5981 8017 3.074504 AGCTTGCGTATCATTGCATTG 57.925 42.857 2.08 2.08 41.42 2.82
5982 8018 2.684374 AGCTTGCGTATCATTGCATTGA 59.316 40.909 13.30 13.30 41.42 2.57
5983 8019 3.317149 AGCTTGCGTATCATTGCATTGAT 59.683 39.130 23.42 23.42 41.42 2.57
5984 8020 4.516321 AGCTTGCGTATCATTGCATTGATA 59.484 37.500 21.66 21.66 41.42 2.15
5985 8021 4.849926 GCTTGCGTATCATTGCATTGATAG 59.150 41.667 24.60 19.64 41.42 2.08
5986 8022 5.334337 GCTTGCGTATCATTGCATTGATAGA 60.334 40.000 24.60 13.17 41.42 1.98
5987 8023 6.616774 TTGCGTATCATTGCATTGATAGAA 57.383 33.333 24.60 16.86 41.42 2.10
5988 8024 6.232139 TGCGTATCATTGCATTGATAGAAG 57.768 37.500 24.60 19.93 38.83 2.85
5989 8025 5.990996 TGCGTATCATTGCATTGATAGAAGA 59.009 36.000 24.60 8.66 38.83 2.87
5990 8026 6.482973 TGCGTATCATTGCATTGATAGAAGAA 59.517 34.615 24.60 14.53 38.83 2.52
5991 8027 7.012232 TGCGTATCATTGCATTGATAGAAGAAA 59.988 33.333 24.60 7.47 38.83 2.52
5992 8028 7.857389 GCGTATCATTGCATTGATAGAAGAAAA 59.143 33.333 24.60 6.86 38.83 2.29
5993 8029 9.888878 CGTATCATTGCATTGATAGAAGAAAAT 57.111 29.630 24.60 5.66 38.83 1.82
6019 8055 8.228035 AGAATGAGTACAGATAGGAGTACAAC 57.772 38.462 0.00 0.00 42.26 3.32
6020 8056 7.834681 AGAATGAGTACAGATAGGAGTACAACA 59.165 37.037 0.00 0.00 42.26 3.33
6021 8057 6.754702 TGAGTACAGATAGGAGTACAACAC 57.245 41.667 0.00 0.00 42.26 3.32
6022 8058 6.243148 TGAGTACAGATAGGAGTACAACACA 58.757 40.000 0.00 0.00 42.26 3.72
6023 8059 6.890268 TGAGTACAGATAGGAGTACAACACAT 59.110 38.462 0.00 0.00 42.26 3.21
6024 8060 7.101652 AGTACAGATAGGAGTACAACACATG 57.898 40.000 0.00 0.00 42.26 3.21
6025 8061 5.344743 ACAGATAGGAGTACAACACATGG 57.655 43.478 0.00 0.00 0.00 3.66
6026 8062 4.122776 CAGATAGGAGTACAACACATGGC 58.877 47.826 0.00 0.00 0.00 4.40
6027 8063 3.774766 AGATAGGAGTACAACACATGGCA 59.225 43.478 0.00 0.00 0.00 4.92
6028 8064 2.185004 AGGAGTACAACACATGGCAC 57.815 50.000 0.00 0.00 0.00 5.01
6029 8065 0.796312 GGAGTACAACACATGGCACG 59.204 55.000 0.00 0.00 0.00 5.34
6030 8066 1.606994 GGAGTACAACACATGGCACGA 60.607 52.381 0.00 0.00 0.00 4.35
6031 8067 2.139917 GAGTACAACACATGGCACGAA 58.860 47.619 0.00 0.00 0.00 3.85
6032 8068 1.871039 AGTACAACACATGGCACGAAC 59.129 47.619 0.00 0.00 0.00 3.95
6033 8069 0.862490 TACAACACATGGCACGAACG 59.138 50.000 0.00 0.00 0.00 3.95
6034 8070 1.725625 CAACACATGGCACGAACGC 60.726 57.895 0.00 0.00 0.00 4.84
6035 8071 2.183504 AACACATGGCACGAACGCA 61.184 52.632 0.00 0.00 0.00 5.24
6036 8072 2.116736 AACACATGGCACGAACGCAG 62.117 55.000 0.00 0.00 0.00 5.18
6037 8073 3.049674 ACATGGCACGAACGCAGG 61.050 61.111 0.00 0.00 0.00 4.85
6038 8074 4.465512 CATGGCACGAACGCAGGC 62.466 66.667 0.00 6.81 0.00 4.85
6050 8086 3.058160 GCAGGCAGGCGTGAACAT 61.058 61.111 17.21 0.00 34.13 2.71
6051 8087 2.872557 CAGGCAGGCGTGAACATG 59.127 61.111 11.29 0.00 34.13 3.21
6052 8088 2.360350 AGGCAGGCGTGAACATGG 60.360 61.111 11.29 0.00 0.00 3.66
6053 8089 2.672996 GGCAGGCGTGAACATGGT 60.673 61.111 11.29 0.00 0.00 3.55
6054 8090 2.562912 GCAGGCGTGAACATGGTG 59.437 61.111 11.29 0.00 0.00 4.17
6055 8091 1.965930 GCAGGCGTGAACATGGTGA 60.966 57.895 11.29 0.00 0.00 4.02
6056 8092 1.868997 CAGGCGTGAACATGGTGAC 59.131 57.895 0.00 0.00 0.00 3.67
6057 8093 1.302511 AGGCGTGAACATGGTGACC 60.303 57.895 0.00 0.00 0.00 4.02
6058 8094 2.677003 GGCGTGAACATGGTGACCG 61.677 63.158 0.00 0.00 0.00 4.79
6059 8095 2.677003 GCGTGAACATGGTGACCGG 61.677 63.158 0.00 0.00 0.00 5.28
6060 8096 1.005512 CGTGAACATGGTGACCGGA 60.006 57.895 9.46 0.00 0.00 5.14
6061 8097 1.014044 CGTGAACATGGTGACCGGAG 61.014 60.000 9.46 0.00 0.00 4.63
6062 8098 1.003839 TGAACATGGTGACCGGAGC 60.004 57.895 9.46 0.00 0.00 4.70
6063 8099 1.003839 GAACATGGTGACCGGAGCA 60.004 57.895 9.46 1.98 0.00 4.26
6064 8100 1.003355 AACATGGTGACCGGAGCAG 60.003 57.895 9.46 0.00 0.00 4.24
6065 8101 1.480212 AACATGGTGACCGGAGCAGA 61.480 55.000 9.46 0.00 0.00 4.26
6066 8102 1.296392 CATGGTGACCGGAGCAGAA 59.704 57.895 9.46 0.00 0.00 3.02
6067 8103 0.321564 CATGGTGACCGGAGCAGAAA 60.322 55.000 9.46 0.00 0.00 2.52
6068 8104 0.036010 ATGGTGACCGGAGCAGAAAG 60.036 55.000 9.46 0.00 0.00 2.62
6069 8105 1.118965 TGGTGACCGGAGCAGAAAGA 61.119 55.000 9.46 0.00 0.00 2.52
6070 8106 0.034896 GGTGACCGGAGCAGAAAGAA 59.965 55.000 9.46 0.00 0.00 2.52
6071 8107 1.542547 GGTGACCGGAGCAGAAAGAAA 60.543 52.381 9.46 0.00 0.00 2.52
6072 8108 2.218603 GTGACCGGAGCAGAAAGAAAA 58.781 47.619 9.46 0.00 0.00 2.29
6073 8109 2.224314 GTGACCGGAGCAGAAAGAAAAG 59.776 50.000 9.46 0.00 0.00 2.27
6074 8110 1.807142 GACCGGAGCAGAAAGAAAAGG 59.193 52.381 9.46 0.00 0.00 3.11
6075 8111 1.168714 CCGGAGCAGAAAGAAAAGGG 58.831 55.000 0.00 0.00 0.00 3.95
6076 8112 1.271379 CCGGAGCAGAAAGAAAAGGGA 60.271 52.381 0.00 0.00 0.00 4.20
6077 8113 2.619074 CCGGAGCAGAAAGAAAAGGGAT 60.619 50.000 0.00 0.00 0.00 3.85
6078 8114 2.421424 CGGAGCAGAAAGAAAAGGGATG 59.579 50.000 0.00 0.00 0.00 3.51
6079 8115 2.165234 GGAGCAGAAAGAAAAGGGATGC 59.835 50.000 0.00 0.00 0.00 3.91
6080 8116 3.087781 GAGCAGAAAGAAAAGGGATGCT 58.912 45.455 0.00 0.00 44.65 3.79
6081 8117 3.087781 AGCAGAAAGAAAAGGGATGCTC 58.912 45.455 0.00 0.00 38.04 4.26
6082 8118 2.159462 GCAGAAAGAAAAGGGATGCTCG 60.159 50.000 0.00 0.00 0.00 5.03
6083 8119 3.338249 CAGAAAGAAAAGGGATGCTCGA 58.662 45.455 0.00 0.00 0.00 4.04
6084 8120 3.126000 CAGAAAGAAAAGGGATGCTCGAC 59.874 47.826 0.00 0.00 0.00 4.20
6085 8121 2.115343 AAGAAAAGGGATGCTCGACC 57.885 50.000 0.00 0.00 0.00 4.79
6086 8122 0.253327 AGAAAAGGGATGCTCGACCC 59.747 55.000 0.45 0.45 45.88 4.46
6090 8126 2.107141 GGGATGCTCGACCCGAAG 59.893 66.667 0.00 0.00 36.56 3.79
6091 8127 2.423898 GGGATGCTCGACCCGAAGA 61.424 63.158 0.00 0.00 36.56 2.87
6092 8128 1.066587 GGATGCTCGACCCGAAGAG 59.933 63.158 0.00 0.00 34.74 2.85
6093 8129 1.384989 GGATGCTCGACCCGAAGAGA 61.385 60.000 0.00 0.00 36.65 3.10
6094 8130 0.030101 GATGCTCGACCCGAAGAGAG 59.970 60.000 0.00 0.00 36.65 3.20
6095 8131 1.388065 ATGCTCGACCCGAAGAGAGG 61.388 60.000 0.00 0.00 36.65 3.69
6096 8132 1.749638 GCTCGACCCGAAGAGAGGA 60.750 63.158 0.00 0.00 36.65 3.71
6097 8133 1.104577 GCTCGACCCGAAGAGAGGAT 61.105 60.000 0.00 0.00 36.65 3.24
6098 8134 1.814634 GCTCGACCCGAAGAGAGGATA 60.815 57.143 0.00 0.00 36.65 2.59
6099 8135 1.874872 CTCGACCCGAAGAGAGGATAC 59.125 57.143 0.00 0.00 36.65 2.24
6100 8136 1.211212 TCGACCCGAAGAGAGGATACA 59.789 52.381 0.00 0.00 32.64 2.29
6101 8137 2.158652 TCGACCCGAAGAGAGGATACAT 60.159 50.000 0.00 0.00 32.64 2.29
6102 8138 2.226912 CGACCCGAAGAGAGGATACATC 59.773 54.545 0.00 0.00 41.41 3.06
6103 8139 3.223435 GACCCGAAGAGAGGATACATCA 58.777 50.000 0.00 0.00 41.41 3.07
6104 8140 2.959707 ACCCGAAGAGAGGATACATCAC 59.040 50.000 0.00 0.00 41.41 3.06
6105 8141 2.959030 CCCGAAGAGAGGATACATCACA 59.041 50.000 0.00 0.00 41.41 3.58
6106 8142 3.005261 CCCGAAGAGAGGATACATCACAG 59.995 52.174 0.00 0.00 41.41 3.66
6107 8143 3.551863 CCGAAGAGAGGATACATCACAGC 60.552 52.174 0.00 0.00 41.41 4.40
6108 8144 3.317711 CGAAGAGAGGATACATCACAGCT 59.682 47.826 0.00 0.00 41.41 4.24
6109 8145 4.517075 CGAAGAGAGGATACATCACAGCTA 59.483 45.833 0.00 0.00 41.41 3.32
6110 8146 5.009110 CGAAGAGAGGATACATCACAGCTAA 59.991 44.000 0.00 0.00 41.41 3.09
6111 8147 6.460261 CGAAGAGAGGATACATCACAGCTAAA 60.460 42.308 0.00 0.00 41.41 1.85
6112 8148 6.155475 AGAGAGGATACATCACAGCTAAAC 57.845 41.667 0.00 0.00 41.41 2.01
6113 8149 5.069781 AGAGAGGATACATCACAGCTAAACC 59.930 44.000 0.00 0.00 41.41 3.27
6114 8150 4.965532 AGAGGATACATCACAGCTAAACCT 59.034 41.667 0.00 0.00 41.41 3.50
6115 8151 6.136857 AGAGGATACATCACAGCTAAACCTA 58.863 40.000 0.00 0.00 41.41 3.08
6116 8152 6.041069 AGAGGATACATCACAGCTAAACCTAC 59.959 42.308 0.00 0.00 41.41 3.18
6117 8153 5.070580 AGGATACATCACAGCTAAACCTACC 59.929 44.000 0.00 0.00 41.41 3.18
6118 8154 5.163343 GGATACATCACAGCTAAACCTACCA 60.163 44.000 0.00 0.00 0.00 3.25
6119 8155 4.634012 ACATCACAGCTAAACCTACCAA 57.366 40.909 0.00 0.00 0.00 3.67
6120 8156 4.980573 ACATCACAGCTAAACCTACCAAA 58.019 39.130 0.00 0.00 0.00 3.28
6121 8157 4.760204 ACATCACAGCTAAACCTACCAAAC 59.240 41.667 0.00 0.00 0.00 2.93
6122 8158 3.746940 TCACAGCTAAACCTACCAAACC 58.253 45.455 0.00 0.00 0.00 3.27
6123 8159 2.817844 CACAGCTAAACCTACCAAACCC 59.182 50.000 0.00 0.00 0.00 4.11
6124 8160 2.081462 CAGCTAAACCTACCAAACCCG 58.919 52.381 0.00 0.00 0.00 5.28
6125 8161 1.980036 AGCTAAACCTACCAAACCCGA 59.020 47.619 0.00 0.00 0.00 5.14
6126 8162 2.372837 AGCTAAACCTACCAAACCCGAA 59.627 45.455 0.00 0.00 0.00 4.30
6127 8163 2.485426 GCTAAACCTACCAAACCCGAAC 59.515 50.000 0.00 0.00 0.00 3.95
6128 8164 1.985473 AAACCTACCAAACCCGAACC 58.015 50.000 0.00 0.00 0.00 3.62
6129 8165 0.845337 AACCTACCAAACCCGAACCA 59.155 50.000 0.00 0.00 0.00 3.67
6130 8166 0.845337 ACCTACCAAACCCGAACCAA 59.155 50.000 0.00 0.00 0.00 3.67
6131 8167 1.202842 ACCTACCAAACCCGAACCAAG 60.203 52.381 0.00 0.00 0.00 3.61
6132 8168 1.072648 CCTACCAAACCCGAACCAAGA 59.927 52.381 0.00 0.00 0.00 3.02
6133 8169 2.423577 CTACCAAACCCGAACCAAGAG 58.576 52.381 0.00 0.00 0.00 2.85
6134 8170 0.549469 ACCAAACCCGAACCAAGAGT 59.451 50.000 0.00 0.00 0.00 3.24
6135 8171 0.951558 CCAAACCCGAACCAAGAGTG 59.048 55.000 0.00 0.00 0.00 3.51
6152 8188 3.284449 GGCAACGCCGAACCAACT 61.284 61.111 0.00 0.00 39.62 3.16
6153 8189 2.251371 GCAACGCCGAACCAACTC 59.749 61.111 0.00 0.00 0.00 3.01
6154 8190 2.549282 CAACGCCGAACCAACTCG 59.451 61.111 0.00 0.00 38.58 4.18
6155 8191 1.952133 CAACGCCGAACCAACTCGA 60.952 57.895 0.00 0.00 41.44 4.04
6156 8192 1.952635 AACGCCGAACCAACTCGAC 60.953 57.895 0.00 0.00 41.44 4.20
6157 8193 3.110178 CGCCGAACCAACTCGACC 61.110 66.667 0.00 0.00 41.44 4.79
6158 8194 2.029964 GCCGAACCAACTCGACCA 59.970 61.111 0.00 0.00 41.44 4.02
6159 8195 1.375523 GCCGAACCAACTCGACCAT 60.376 57.895 0.00 0.00 41.44 3.55
6160 8196 1.359459 GCCGAACCAACTCGACCATC 61.359 60.000 0.00 0.00 41.44 3.51
6161 8197 0.037697 CCGAACCAACTCGACCATCA 60.038 55.000 0.00 0.00 41.44 3.07
6162 8198 1.606994 CCGAACCAACTCGACCATCAA 60.607 52.381 0.00 0.00 41.44 2.57
6163 8199 1.459592 CGAACCAACTCGACCATCAAC 59.540 52.381 0.00 0.00 41.44 3.18
6164 8200 2.489971 GAACCAACTCGACCATCAACA 58.510 47.619 0.00 0.00 0.00 3.33
6165 8201 2.859165 ACCAACTCGACCATCAACAT 57.141 45.000 0.00 0.00 0.00 2.71
6166 8202 2.699954 ACCAACTCGACCATCAACATC 58.300 47.619 0.00 0.00 0.00 3.06
6167 8203 2.303022 ACCAACTCGACCATCAACATCT 59.697 45.455 0.00 0.00 0.00 2.90
6168 8204 2.932614 CCAACTCGACCATCAACATCTC 59.067 50.000 0.00 0.00 0.00 2.75
6169 8205 2.568696 ACTCGACCATCAACATCTCG 57.431 50.000 0.00 0.00 0.00 4.04
6170 8206 1.135139 ACTCGACCATCAACATCTCGG 59.865 52.381 0.00 0.00 0.00 4.63
6171 8207 0.459899 TCGACCATCAACATCTCGGG 59.540 55.000 0.00 0.00 0.00 5.14
6172 8208 0.459899 CGACCATCAACATCTCGGGA 59.540 55.000 0.00 0.00 0.00 5.14
6173 8209 1.134818 CGACCATCAACATCTCGGGAA 60.135 52.381 0.00 0.00 0.00 3.97
6174 8210 2.280628 GACCATCAACATCTCGGGAAC 58.719 52.381 0.00 0.00 0.00 3.62
6187 8223 3.767816 GGAACCAAAACCGGGGAC 58.232 61.111 6.32 0.00 0.00 4.46
6188 8224 1.152715 GGAACCAAAACCGGGGACA 60.153 57.895 6.32 0.00 0.00 4.02
6189 8225 1.457823 GGAACCAAAACCGGGGACAC 61.458 60.000 6.32 0.00 0.00 3.67
6190 8226 1.456145 AACCAAAACCGGGGACACC 60.456 57.895 6.32 0.00 0.00 4.16
6205 8241 4.135153 ACCGCGAGCGAGCAAGAT 62.135 61.111 19.72 0.00 42.83 2.40
6206 8242 3.624300 CCGCGAGCGAGCAAGATG 61.624 66.667 19.72 0.00 42.83 2.90
6207 8243 3.624300 CGCGAGCGAGCAAGATGG 61.624 66.667 12.58 0.00 42.83 3.51
6208 8244 3.934684 GCGAGCGAGCAAGATGGC 61.935 66.667 0.00 0.00 37.05 4.40
6209 8245 3.624300 CGAGCGAGCAAGATGGCG 61.624 66.667 0.00 0.00 39.27 5.69
6213 8249 2.821366 CGAGCAAGATGGCGCCTT 60.821 61.111 29.70 22.95 39.27 4.35
6214 8250 2.817423 CGAGCAAGATGGCGCCTTC 61.817 63.158 29.78 29.78 39.27 3.46
6215 8251 1.746615 GAGCAAGATGGCGCCTTCA 60.747 57.895 35.52 16.01 39.27 3.02
6216 8252 1.303561 AGCAAGATGGCGCCTTCAA 60.304 52.632 35.52 15.63 39.27 2.69
6217 8253 1.138247 GCAAGATGGCGCCTTCAAG 59.862 57.895 35.52 28.26 0.00 3.02
6218 8254 1.308069 GCAAGATGGCGCCTTCAAGA 61.308 55.000 35.52 14.48 0.00 3.02
6219 8255 1.167851 CAAGATGGCGCCTTCAAGAA 58.832 50.000 35.52 13.73 0.00 2.52
6220 8256 1.131883 CAAGATGGCGCCTTCAAGAAG 59.868 52.381 35.52 19.93 38.14 2.85
6230 8266 1.983972 CTTCAAGAAGGAGGACGACG 58.016 55.000 1.86 0.00 34.87 5.12
6231 8267 1.269998 CTTCAAGAAGGAGGACGACGT 59.730 52.381 0.00 0.00 34.87 4.34
6232 8268 0.879765 TCAAGAAGGAGGACGACGTC 59.120 55.000 19.70 19.70 0.00 4.34
6233 8269 0.454620 CAAGAAGGAGGACGACGTCG 60.455 60.000 34.58 34.58 46.33 5.12
6234 8270 0.604780 AAGAAGGAGGACGACGTCGA 60.605 55.000 41.52 0.00 43.02 4.20
6235 8271 1.020333 AGAAGGAGGACGACGTCGAG 61.020 60.000 41.52 16.87 43.02 4.04
6236 8272 1.004080 AAGGAGGACGACGTCGAGA 60.004 57.895 41.52 0.00 43.02 4.04
6237 8273 1.297456 AAGGAGGACGACGTCGAGAC 61.297 60.000 41.52 28.46 43.02 3.36
6273 8309 2.342478 CGGAGGAATCGGACCTAGG 58.658 63.158 7.41 7.41 37.93 3.02
6274 8310 1.179814 CGGAGGAATCGGACCTAGGG 61.180 65.000 14.81 0.00 37.93 3.53
6275 8311 0.105607 GGAGGAATCGGACCTAGGGT 60.106 60.000 14.81 0.00 39.44 4.34
6319 8355 3.056328 GCCGAGGGCCTTGACAAC 61.056 66.667 22.99 4.92 44.06 3.32
6320 8356 2.742372 CCGAGGGCCTTGACAACG 60.742 66.667 22.99 12.66 0.00 4.10
6321 8357 3.423154 CGAGGGCCTTGACAACGC 61.423 66.667 16.36 0.98 0.00 4.84
6322 8358 3.056328 GAGGGCCTTGACAACGCC 61.056 66.667 17.15 17.15 42.23 5.68
6323 8359 3.553095 GAGGGCCTTGACAACGCCT 62.553 63.158 22.40 11.98 42.58 5.52
6324 8360 3.056328 GGGCCTTGACAACGCCTC 61.056 66.667 22.40 12.29 42.58 4.70
6325 8361 3.056328 GGCCTTGACAACGCCTCC 61.056 66.667 17.88 0.00 39.70 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.862209 TGATATTAACTTGGCGCAAAATTCT 58.138 32.000 10.83 0.00 0.00 2.40
1 2 7.306749 CCATGATATTAACTTGGCGCAAAATTC 60.307 37.037 10.83 0.00 0.00 2.17
2 3 6.479660 CCATGATATTAACTTGGCGCAAAATT 59.520 34.615 10.83 2.08 0.00 1.82
9 10 5.507315 GGGTTTCCATGATATTAACTTGGCG 60.507 44.000 0.00 0.00 34.13 5.69
22 23 2.642311 TGAGCAGTTAGGGTTTCCATGA 59.358 45.455 0.00 0.00 34.83 3.07
24 25 3.806949 TTGAGCAGTTAGGGTTTCCAT 57.193 42.857 0.00 0.00 34.83 3.41
27 28 4.518970 TCATGTTTGAGCAGTTAGGGTTTC 59.481 41.667 0.00 0.00 0.00 2.78
66 67 1.843851 CATCCCAACCAAGCCCTACTA 59.156 52.381 0.00 0.00 0.00 1.82
72 73 0.324645 ACATCCATCCCAACCAAGCC 60.325 55.000 0.00 0.00 0.00 4.35
78 79 2.524306 TGTGGAAACATCCATCCCAAC 58.476 47.619 0.19 0.00 46.14 3.77
86 87 7.229306 TCAGCTTCATATAATGTGGAAACATCC 59.771 37.037 0.00 0.00 46.14 3.51
105 106 3.304726 GCTTAGGGTTGTTTGTCAGCTTC 60.305 47.826 0.00 0.00 0.00 3.86
115 116 5.046807 ACTGACGTTATAGCTTAGGGTTGTT 60.047 40.000 0.00 0.00 0.00 2.83
129 130 2.526432 AGTGGACTGGACTGACGTTAT 58.474 47.619 0.00 0.00 0.00 1.89
130 131 1.991121 AGTGGACTGGACTGACGTTA 58.009 50.000 0.00 0.00 0.00 3.18
131 132 1.887198 CTAGTGGACTGGACTGACGTT 59.113 52.381 0.00 0.00 0.00 3.99
133 134 1.822506 TCTAGTGGACTGGACTGACG 58.177 55.000 0.00 0.00 0.00 4.35
163 164 7.120726 AGCAAACCATGACCTACAAACTATAAC 59.879 37.037 0.00 0.00 0.00 1.89
221 531 4.730949 ATGATTTTGCACAATCTCCTGG 57.269 40.909 22.53 0.00 34.66 4.45
224 534 7.010183 CAGATCAAATGATTTTGCACAATCTCC 59.990 37.037 22.53 2.13 41.66 3.71
261 572 7.079451 ACCTAATGGGGAGTAGAAACATATG 57.921 40.000 0.00 0.00 40.03 1.78
264 575 6.749036 CTACCTAATGGGGAGTAGAAACAT 57.251 41.667 0.00 0.00 41.20 2.71
320 631 1.004440 GGGCAACGACTCTGCTCTT 60.004 57.895 0.00 0.00 37.31 2.85
340 651 2.111043 CACCGTGTTGCTCCCACT 59.889 61.111 0.00 0.00 0.00 4.00
372 686 5.994054 ACCGTAATCACTATAACGAGCTCTA 59.006 40.000 12.85 0.00 37.53 2.43
386 700 1.269621 CCTCATCGGGACCGTAATCAC 60.270 57.143 10.90 0.00 40.74 3.06
400 1360 3.372206 GTCAATATGCCATACGCCTCATC 59.628 47.826 0.00 0.00 36.24 2.92
422 1382 1.227943 CTACCATGCCCCCACATCG 60.228 63.158 0.00 0.00 0.00 3.84
425 1385 2.000701 CCTCTACCATGCCCCCACA 61.001 63.158 0.00 0.00 0.00 4.17
431 1391 0.694444 TCCCCTTCCTCTACCATGCC 60.694 60.000 0.00 0.00 0.00 4.40
436 1396 3.182976 AGAAAAGTCCCCTTCCTCTACC 58.817 50.000 0.00 0.00 0.00 3.18
439 1399 3.056832 ACAAGAAAAGTCCCCTTCCTCT 58.943 45.455 0.00 0.00 0.00 3.69
459 1419 3.513909 AAACCCTAACCTAACCACCAC 57.486 47.619 0.00 0.00 0.00 4.16
493 1453 4.142337 ACGAATCAAACCCAAAAGTCGTTT 60.142 37.500 0.00 0.00 37.18 3.60
498 1458 2.946990 ACGACGAATCAAACCCAAAAGT 59.053 40.909 0.00 0.00 0.00 2.66
538 1498 5.986501 AGTCTAAACTCACTCCTAGGTTG 57.013 43.478 9.08 7.71 0.00 3.77
577 1560 1.086067 ATCACATGTTCGCCGAGCAG 61.086 55.000 9.95 4.56 0.00 4.24
580 1563 0.855349 GCTATCACATGTTCGCCGAG 59.145 55.000 0.00 0.00 0.00 4.63
625 1612 4.342378 TGTCCAAGTCACTCCATCTATAGC 59.658 45.833 0.00 0.00 0.00 2.97
626 1613 6.266330 TCATGTCCAAGTCACTCCATCTATAG 59.734 42.308 0.00 0.00 0.00 1.31
746 2206 6.127842 CCTTTGCTTAAGAAAACGGCCTAATA 60.128 38.462 6.67 0.00 35.80 0.98
750 2215 2.296190 CCTTTGCTTAAGAAAACGGCCT 59.704 45.455 6.67 0.00 35.80 5.19
753 2218 7.095816 CCAAATTACCTTTGCTTAAGAAAACGG 60.096 37.037 16.78 16.78 42.46 4.44
759 2224 5.766174 ACGACCAAATTACCTTTGCTTAAGA 59.234 36.000 6.67 0.00 42.46 2.10
902 2370 4.200283 GAGGCGGCGAGGAGTGAG 62.200 72.222 12.98 0.00 0.00 3.51
941 2409 0.892063 GCCCGAGGAATCCTAGCTAG 59.108 60.000 14.20 14.20 31.76 3.42
994 2463 2.896854 CGCACGGGACATGGGATG 60.897 66.667 0.00 0.00 36.28 3.51
1206 2693 1.302192 GCTGGGGTCAACAACGCTA 60.302 57.895 0.00 0.00 40.55 4.26
1216 2703 4.475135 GAGGAAGCGGCTGGGGTC 62.475 72.222 1.81 0.00 0.00 4.46
1421 2911 1.667724 CAGCTTGAACCCTATTCGCAG 59.332 52.381 0.00 0.00 0.00 5.18
1484 2974 0.392193 CACCTCCTCCAGTGTGATGC 60.392 60.000 0.00 0.00 0.00 3.91
1506 2996 1.749634 ACCTCTTTGGGACTATCGTCG 59.250 52.381 0.00 0.00 41.16 5.12
1517 3007 5.435291 AGATTGAGATTGCTACCTCTTTGG 58.565 41.667 0.00 0.00 42.93 3.28
1519 3009 6.305272 TGAGATTGAGATTGCTACCTCTTT 57.695 37.500 0.00 0.00 0.00 2.52
1530 3020 4.167502 ACCATGACCCATGAGATTGAGATT 59.832 41.667 8.38 0.00 43.81 2.40
1595 3085 7.200455 CACGAGTCATACTATCACATTAACCA 58.800 38.462 0.00 0.00 0.00 3.67
1596 3086 6.641314 CCACGAGTCATACTATCACATTAACC 59.359 42.308 0.00 0.00 0.00 2.85
1598 3088 7.576861 TCCACGAGTCATACTATCACATTAA 57.423 36.000 0.00 0.00 0.00 1.40
1600 3090 6.096987 ACTTCCACGAGTCATACTATCACATT 59.903 38.462 0.00 0.00 0.00 2.71
1602 3092 4.948004 ACTTCCACGAGTCATACTATCACA 59.052 41.667 0.00 0.00 0.00 3.58
1603 3093 5.502153 ACTTCCACGAGTCATACTATCAC 57.498 43.478 0.00 0.00 0.00 3.06
1604 3094 5.238868 GCTACTTCCACGAGTCATACTATCA 59.761 44.000 0.00 0.00 0.00 2.15
1605 3095 5.470777 AGCTACTTCCACGAGTCATACTATC 59.529 44.000 0.00 0.00 0.00 2.08
1636 3161 5.182001 AGCTAACAAGTTCATAAACAGCCAG 59.818 40.000 0.00 0.00 37.88 4.85
1661 3187 1.275010 TGCTACAGGTGAATTCGCTCA 59.725 47.619 18.02 5.13 0.00 4.26
1675 3201 7.337480 TCCTAAATCATACGTAGTTGCTACA 57.663 36.000 0.08 0.00 37.78 2.74
1676 3202 8.700644 CATTCCTAAATCATACGTAGTTGCTAC 58.299 37.037 0.08 0.00 37.78 3.58
1679 3205 6.704493 TCCATTCCTAAATCATACGTAGTTGC 59.296 38.462 0.08 0.00 37.78 4.17
1680 3206 8.833231 ATCCATTCCTAAATCATACGTAGTTG 57.167 34.615 0.08 0.00 37.78 3.16
1698 3272 6.154363 TGTGAGGAACCCAAAAATATCCATTC 59.846 38.462 0.00 0.00 32.47 2.67
1710 3284 3.117322 TCCATTCTTTGTGAGGAACCCAA 60.117 43.478 0.00 0.00 0.00 4.12
1836 3410 9.396022 TGGGAGTTATATTTTGAAGAACTGATC 57.604 33.333 0.00 0.00 30.66 2.92
2247 3823 5.615289 AGAATACAAGATAAAGCCTCGCAT 58.385 37.500 0.00 0.00 0.00 4.73
2382 3960 2.672961 TGTGGATCAGCTAACCTTCG 57.327 50.000 0.00 0.00 0.00 3.79
2488 4066 3.872240 GCAGAAACATAACCTGGGCAGTA 60.872 47.826 0.00 0.00 0.00 2.74
2583 4161 4.903049 TCCCCGTACCATGTAACATAGAAT 59.097 41.667 0.00 0.00 0.00 2.40
2584 4162 4.288398 TCCCCGTACCATGTAACATAGAA 58.712 43.478 0.00 0.00 0.00 2.10
2585 4163 3.913509 TCCCCGTACCATGTAACATAGA 58.086 45.455 0.00 0.00 0.00 1.98
2731 4309 9.971922 CTTCATTAACCTCAATTTTATCATCCC 57.028 33.333 0.00 0.00 0.00 3.85
2763 4341 8.848182 GCTGATTTTATCATCCTCAAAAGATCT 58.152 33.333 0.00 0.00 38.85 2.75
2808 4386 0.249280 TCACGCACGACACTTGACAT 60.249 50.000 0.00 0.00 0.00 3.06
2810 4388 1.548973 CCTCACGCACGACACTTGAC 61.549 60.000 0.00 0.00 0.00 3.18
2903 4520 1.270678 GGGGATACGTATTGGGCTGTC 60.271 57.143 9.92 0.00 37.60 3.51
2915 4536 0.974383 GGATACCACAGGGGGATACG 59.026 60.000 0.00 0.00 41.83 3.06
2938 4559 1.392589 ATGCAAAACGGCTGGGATAG 58.607 50.000 0.00 0.00 34.04 2.08
2988 4611 4.801164 ACACGTATCCCTAAGTATCACCT 58.199 43.478 0.00 0.00 0.00 4.00
3097 4720 5.240844 TGATCTCATATGCTTGAAATGCCAG 59.759 40.000 0.00 0.00 35.91 4.85
3098 4721 5.134661 TGATCTCATATGCTTGAAATGCCA 58.865 37.500 0.00 0.00 35.91 4.92
3099 4722 5.700722 TGATCTCATATGCTTGAAATGCC 57.299 39.130 0.00 0.00 35.91 4.40
3100 4723 7.368059 TGAATGATCTCATATGCTTGAAATGC 58.632 34.615 0.00 0.00 35.10 3.56
3101 4724 9.561270 GATGAATGATCTCATATGCTTGAAATG 57.439 33.333 0.00 0.00 36.15 2.32
3285 4915 9.113876 GAACAAAGTAACGTGAATAATTGAAGG 57.886 33.333 0.00 0.00 0.00 3.46
3513 5147 7.915293 ACAGTCATGAATTTTCGTAACCATA 57.085 32.000 0.00 0.00 0.00 2.74
3571 5206 8.122952 GGCAACATACAACAGTGATATAAGAAC 58.877 37.037 0.00 0.00 0.00 3.01
3677 5312 9.232082 TGTCAAAATTTACGACAGAAAAATCTG 57.768 29.630 15.73 4.36 43.03 2.90
4133 5768 9.993454 CATGAGAGAAGTAATTGGAGATTATCA 57.007 33.333 0.00 0.00 0.00 2.15
4281 5916 5.718724 AGTCCGCTTTTTACTACTACTGT 57.281 39.130 0.00 0.00 0.00 3.55
4313 5948 4.038042 TGAATGACACGGATAGATCAGTCC 59.962 45.833 6.38 6.38 34.87 3.85
4488 6123 9.717942 AATAATGTTAATTTGCTGCTTGGTAAA 57.282 25.926 0.00 0.00 0.00 2.01
4686 6334 9.109393 GTTGCAAAGGAATATGAACAGATACTA 57.891 33.333 0.00 0.00 0.00 1.82
4897 6916 6.870971 AACAAATCCGTGTGTACTTATTGT 57.129 33.333 0.00 0.00 0.00 2.71
4911 6930 4.503741 AGTTCCACATCAAACAAATCCG 57.496 40.909 0.00 0.00 0.00 4.18
5054 7075 8.451908 ACAGAACCCTAATCAAGCATATTTAC 57.548 34.615 0.00 0.00 0.00 2.01
5139 7160 7.847564 GTCTTCAATTTGAACTTGATTTTGCAC 59.152 33.333 7.74 0.00 32.21 4.57
5242 7263 5.957842 TCCTGCAACGAGTAATTGATTTT 57.042 34.783 0.00 0.00 0.00 1.82
5256 7277 9.683069 CTAAAATATTCCATATGTTCCTGCAAC 57.317 33.333 1.24 0.00 35.28 4.17
5334 7355 3.433957 TGTCCGAATGTTGGTCATAAACG 59.566 43.478 0.00 0.00 35.48 3.60
5352 7373 6.120378 GAAGAATACCTTCGGAAAATGTCC 57.880 41.667 0.00 0.00 41.54 4.02
5434 7455 6.909550 AGTCCTAGAGCTTATAATCACCAG 57.090 41.667 0.00 0.00 0.00 4.00
5456 7477 2.019249 CTGTGGTGGCATGGTGATTAG 58.981 52.381 0.00 0.00 0.00 1.73
5523 7544 7.996758 TCTCTTTTCCAACCCTCTATTCTAT 57.003 36.000 0.00 0.00 0.00 1.98
5578 7599 0.891373 GTGAGCAGAGCACTCTACCA 59.109 55.000 0.00 0.00 37.98 3.25
5599 7620 7.679144 CAATTATTGCTACTACATGCTATCGG 58.321 38.462 0.00 0.00 0.00 4.18
5736 7770 7.946918 TTTGCAATAACGATCAAGATAAACG 57.053 32.000 0.00 0.00 0.00 3.60
5760 7794 5.565455 AACCATTTGTGGATGTTGGAAAT 57.435 34.783 0.73 0.00 0.00 2.17
5764 7798 4.959723 AGAAAACCATTTGTGGATGTTGG 58.040 39.130 0.73 0.00 0.00 3.77
5801 7835 4.986659 TGACTGATATTGAGATGCGTGATG 59.013 41.667 0.00 0.00 0.00 3.07
5817 7851 6.547141 TCACTCCATTGAAACTTTTGACTGAT 59.453 34.615 0.00 0.00 0.00 2.90
5880 7914 6.294955 CCAGAAACTAGGGTTAAGTTACTCGT 60.295 42.308 0.00 0.00 36.17 4.18
5881 7915 6.071728 TCCAGAAACTAGGGTTAAGTTACTCG 60.072 42.308 0.00 0.00 36.17 4.18
5917 7953 8.715191 ATTCAAAAACTAGCATCACACAAAAA 57.285 26.923 0.00 0.00 0.00 1.94
5918 7954 8.715191 AATTCAAAAACTAGCATCACACAAAA 57.285 26.923 0.00 0.00 0.00 2.44
5919 7955 8.715191 AAATTCAAAAACTAGCATCACACAAA 57.285 26.923 0.00 0.00 0.00 2.83
5920 7956 8.715191 AAAATTCAAAAACTAGCATCACACAA 57.285 26.923 0.00 0.00 0.00 3.33
5921 7957 8.715191 AAAAATTCAAAAACTAGCATCACACA 57.285 26.923 0.00 0.00 0.00 3.72
5944 7980 4.463209 CAAGCTTTGCGTATTCGAGAAAA 58.537 39.130 0.00 0.00 39.71 2.29
5945 7981 4.065423 CAAGCTTTGCGTATTCGAGAAA 57.935 40.909 0.00 0.00 39.71 2.52
5946 7982 3.722555 CAAGCTTTGCGTATTCGAGAA 57.277 42.857 0.00 0.00 39.71 2.87
5958 7994 2.866198 TGCAATGATACGCAAGCTTTG 58.134 42.857 0.00 0.00 45.62 2.77
5959 7995 3.788333 ATGCAATGATACGCAAGCTTT 57.212 38.095 0.00 0.00 42.37 3.51
5960 7996 3.129113 TCAATGCAATGATACGCAAGCTT 59.871 39.130 0.00 0.00 42.37 3.74
5961 7997 2.684374 TCAATGCAATGATACGCAAGCT 59.316 40.909 0.00 0.00 42.37 3.74
5962 7998 3.069074 TCAATGCAATGATACGCAAGC 57.931 42.857 0.00 0.00 42.37 4.01
5963 7999 6.232139 TCTATCAATGCAATGATACGCAAG 57.768 37.500 18.52 11.65 42.37 4.01
5964 8000 6.482973 TCTTCTATCAATGCAATGATACGCAA 59.517 34.615 18.52 11.35 42.37 4.85
5965 8001 5.990996 TCTTCTATCAATGCAATGATACGCA 59.009 36.000 18.52 2.96 40.44 5.24
5966 8002 6.471976 TCTTCTATCAATGCAATGATACGC 57.528 37.500 18.52 0.00 40.44 4.42
5967 8003 9.888878 ATTTTCTTCTATCAATGCAATGATACG 57.111 29.630 18.52 14.61 40.44 3.06
5993 8029 9.339850 GTTGTACTCCTATCTGTACTCATTCTA 57.660 37.037 0.00 0.00 39.57 2.10
5994 8030 7.834681 TGTTGTACTCCTATCTGTACTCATTCT 59.165 37.037 0.00 0.00 39.57 2.40
5995 8031 7.916450 GTGTTGTACTCCTATCTGTACTCATTC 59.084 40.741 0.00 0.00 39.57 2.67
5996 8032 7.396339 TGTGTTGTACTCCTATCTGTACTCATT 59.604 37.037 0.00 0.00 39.57 2.57
5997 8033 6.890268 TGTGTTGTACTCCTATCTGTACTCAT 59.110 38.462 0.00 0.00 39.57 2.90
5998 8034 6.243148 TGTGTTGTACTCCTATCTGTACTCA 58.757 40.000 0.00 0.00 39.57 3.41
5999 8035 6.754702 TGTGTTGTACTCCTATCTGTACTC 57.245 41.667 0.00 0.00 39.57 2.59
6000 8036 6.096987 CCATGTGTTGTACTCCTATCTGTACT 59.903 42.308 0.00 0.00 39.57 2.73
6001 8037 6.273825 CCATGTGTTGTACTCCTATCTGTAC 58.726 44.000 0.00 0.00 39.37 2.90
6002 8038 5.163447 GCCATGTGTTGTACTCCTATCTGTA 60.163 44.000 0.00 0.00 0.00 2.74
6003 8039 4.383118 GCCATGTGTTGTACTCCTATCTGT 60.383 45.833 0.00 0.00 0.00 3.41
6004 8040 4.122776 GCCATGTGTTGTACTCCTATCTG 58.877 47.826 0.00 0.00 0.00 2.90
6005 8041 3.774766 TGCCATGTGTTGTACTCCTATCT 59.225 43.478 0.00 0.00 0.00 1.98
6006 8042 3.871594 GTGCCATGTGTTGTACTCCTATC 59.128 47.826 0.00 0.00 0.00 2.08
6007 8043 3.678806 CGTGCCATGTGTTGTACTCCTAT 60.679 47.826 0.00 0.00 0.00 2.57
6008 8044 2.353307 CGTGCCATGTGTTGTACTCCTA 60.353 50.000 0.00 0.00 0.00 2.94
6009 8045 1.608025 CGTGCCATGTGTTGTACTCCT 60.608 52.381 0.00 0.00 0.00 3.69
6010 8046 0.796312 CGTGCCATGTGTTGTACTCC 59.204 55.000 0.00 0.00 0.00 3.85
6011 8047 1.790755 TCGTGCCATGTGTTGTACTC 58.209 50.000 0.00 0.00 0.00 2.59
6012 8048 1.871039 GTTCGTGCCATGTGTTGTACT 59.129 47.619 0.00 0.00 0.00 2.73
6013 8049 1.397945 CGTTCGTGCCATGTGTTGTAC 60.398 52.381 0.00 0.00 0.00 2.90
6014 8050 0.862490 CGTTCGTGCCATGTGTTGTA 59.138 50.000 0.00 0.00 0.00 2.41
6015 8051 1.646540 CGTTCGTGCCATGTGTTGT 59.353 52.632 0.00 0.00 0.00 3.32
6016 8052 1.725625 GCGTTCGTGCCATGTGTTG 60.726 57.895 0.00 0.00 0.00 3.33
6017 8053 2.116736 CTGCGTTCGTGCCATGTGTT 62.117 55.000 0.00 0.00 0.00 3.32
6018 8054 2.590291 TGCGTTCGTGCCATGTGT 60.590 55.556 0.00 0.00 0.00 3.72
6019 8055 2.174107 CTGCGTTCGTGCCATGTG 59.826 61.111 0.00 0.00 0.00 3.21
6020 8056 3.049674 CCTGCGTTCGTGCCATGT 61.050 61.111 0.00 0.00 0.00 3.21
6021 8057 4.465512 GCCTGCGTTCGTGCCATG 62.466 66.667 0.00 0.00 0.00 3.66
6033 8069 3.058160 ATGTTCACGCCTGCCTGC 61.058 61.111 0.00 0.00 0.00 4.85
6034 8070 2.693762 CCATGTTCACGCCTGCCTG 61.694 63.158 0.00 0.00 0.00 4.85
6035 8071 2.360350 CCATGTTCACGCCTGCCT 60.360 61.111 0.00 0.00 0.00 4.75
6036 8072 2.672996 ACCATGTTCACGCCTGCC 60.673 61.111 0.00 0.00 0.00 4.85
6037 8073 1.965930 TCACCATGTTCACGCCTGC 60.966 57.895 0.00 0.00 0.00 4.85
6038 8074 1.577328 GGTCACCATGTTCACGCCTG 61.577 60.000 0.00 0.00 0.00 4.85
6039 8075 1.302511 GGTCACCATGTTCACGCCT 60.303 57.895 0.00 0.00 0.00 5.52
6040 8076 2.677003 CGGTCACCATGTTCACGCC 61.677 63.158 0.00 0.00 0.00 5.68
6041 8077 2.677003 CCGGTCACCATGTTCACGC 61.677 63.158 0.00 0.00 0.00 5.34
6042 8078 1.005512 TCCGGTCACCATGTTCACG 60.006 57.895 0.00 0.00 0.00 4.35
6043 8079 1.298859 GCTCCGGTCACCATGTTCAC 61.299 60.000 0.00 0.00 0.00 3.18
6044 8080 1.003839 GCTCCGGTCACCATGTTCA 60.004 57.895 0.00 0.00 0.00 3.18
6045 8081 1.003839 TGCTCCGGTCACCATGTTC 60.004 57.895 0.00 0.00 0.00 3.18
6046 8082 1.003355 CTGCTCCGGTCACCATGTT 60.003 57.895 0.00 0.00 0.00 2.71
6047 8083 1.480212 TTCTGCTCCGGTCACCATGT 61.480 55.000 0.00 0.00 0.00 3.21
6048 8084 0.321564 TTTCTGCTCCGGTCACCATG 60.322 55.000 0.00 0.00 0.00 3.66
6049 8085 0.036010 CTTTCTGCTCCGGTCACCAT 60.036 55.000 0.00 0.00 0.00 3.55
6050 8086 1.118965 TCTTTCTGCTCCGGTCACCA 61.119 55.000 0.00 0.00 0.00 4.17
6051 8087 0.034896 TTCTTTCTGCTCCGGTCACC 59.965 55.000 0.00 0.00 0.00 4.02
6052 8088 1.878953 TTTCTTTCTGCTCCGGTCAC 58.121 50.000 0.00 0.00 0.00 3.67
6053 8089 2.494059 CTTTTCTTTCTGCTCCGGTCA 58.506 47.619 0.00 0.00 0.00 4.02
6054 8090 1.807142 CCTTTTCTTTCTGCTCCGGTC 59.193 52.381 0.00 0.00 0.00 4.79
6055 8091 1.545651 CCCTTTTCTTTCTGCTCCGGT 60.546 52.381 0.00 0.00 0.00 5.28
6056 8092 1.168714 CCCTTTTCTTTCTGCTCCGG 58.831 55.000 0.00 0.00 0.00 5.14
6057 8093 2.185004 TCCCTTTTCTTTCTGCTCCG 57.815 50.000 0.00 0.00 0.00 4.63
6058 8094 2.165234 GCATCCCTTTTCTTTCTGCTCC 59.835 50.000 0.00 0.00 0.00 4.70
6059 8095 3.087781 AGCATCCCTTTTCTTTCTGCTC 58.912 45.455 0.00 0.00 33.47 4.26
6060 8096 3.087781 GAGCATCCCTTTTCTTTCTGCT 58.912 45.455 0.00 0.00 40.89 4.24
6061 8097 2.159462 CGAGCATCCCTTTTCTTTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
6062 8098 3.126000 GTCGAGCATCCCTTTTCTTTCTG 59.874 47.826 0.00 0.00 0.00 3.02
6063 8099 3.339141 GTCGAGCATCCCTTTTCTTTCT 58.661 45.455 0.00 0.00 0.00 2.52
6064 8100 2.420372 GGTCGAGCATCCCTTTTCTTTC 59.580 50.000 10.30 0.00 0.00 2.62
6065 8101 2.437413 GGTCGAGCATCCCTTTTCTTT 58.563 47.619 10.30 0.00 0.00 2.52
6066 8102 1.340114 GGGTCGAGCATCCCTTTTCTT 60.340 52.381 17.59 0.00 40.48 2.52
6067 8103 0.253327 GGGTCGAGCATCCCTTTTCT 59.747 55.000 17.59 0.00 40.48 2.52
6068 8104 1.090052 CGGGTCGAGCATCCCTTTTC 61.090 60.000 17.59 0.00 41.40 2.29
6069 8105 1.078426 CGGGTCGAGCATCCCTTTT 60.078 57.895 17.59 0.00 41.40 2.27
6070 8106 1.550130 TTCGGGTCGAGCATCCCTTT 61.550 55.000 17.59 0.00 41.40 3.11
6071 8107 1.961180 CTTCGGGTCGAGCATCCCTT 61.961 60.000 17.59 0.00 41.40 3.95
6072 8108 2.363795 TTCGGGTCGAGCATCCCT 60.364 61.111 17.59 0.00 41.40 4.20
6073 8109 2.107141 CTTCGGGTCGAGCATCCC 59.893 66.667 17.59 7.91 37.14 3.85
6074 8110 1.066587 CTCTTCGGGTCGAGCATCC 59.933 63.158 17.59 0.00 37.14 3.51
6075 8111 0.030101 CTCTCTTCGGGTCGAGCATC 59.970 60.000 17.59 0.00 37.14 3.91
6076 8112 1.388065 CCTCTCTTCGGGTCGAGCAT 61.388 60.000 17.59 0.00 37.14 3.79
6077 8113 2.046864 CCTCTCTTCGGGTCGAGCA 61.047 63.158 17.59 0.00 37.14 4.26
6078 8114 1.104577 ATCCTCTCTTCGGGTCGAGC 61.105 60.000 5.93 5.93 37.14 5.03
6079 8115 1.874872 GTATCCTCTCTTCGGGTCGAG 59.125 57.143 0.00 0.00 37.14 4.04
6080 8116 1.211212 TGTATCCTCTCTTCGGGTCGA 59.789 52.381 0.00 0.00 0.00 4.20
6081 8117 1.676746 TGTATCCTCTCTTCGGGTCG 58.323 55.000 0.00 0.00 0.00 4.79
6082 8118 3.004944 GTGATGTATCCTCTCTTCGGGTC 59.995 52.174 0.00 0.00 0.00 4.46
6083 8119 2.959707 GTGATGTATCCTCTCTTCGGGT 59.040 50.000 0.00 0.00 0.00 5.28
6084 8120 2.959030 TGTGATGTATCCTCTCTTCGGG 59.041 50.000 0.00 0.00 0.00 5.14
6085 8121 3.551863 GCTGTGATGTATCCTCTCTTCGG 60.552 52.174 0.00 0.00 0.00 4.30
6086 8122 3.317711 AGCTGTGATGTATCCTCTCTTCG 59.682 47.826 0.00 0.00 0.00 3.79
6087 8123 4.935352 AGCTGTGATGTATCCTCTCTTC 57.065 45.455 0.00 0.00 0.00 2.87
6088 8124 6.407525 GGTTTAGCTGTGATGTATCCTCTCTT 60.408 42.308 0.00 0.00 0.00 2.85
6089 8125 5.069781 GGTTTAGCTGTGATGTATCCTCTCT 59.930 44.000 0.00 0.00 0.00 3.10
6090 8126 5.069781 AGGTTTAGCTGTGATGTATCCTCTC 59.930 44.000 0.00 0.00 0.00 3.20
6091 8127 4.965532 AGGTTTAGCTGTGATGTATCCTCT 59.034 41.667 0.00 0.00 0.00 3.69
6092 8128 5.283457 AGGTTTAGCTGTGATGTATCCTC 57.717 43.478 0.00 0.00 0.00 3.71
6093 8129 5.070580 GGTAGGTTTAGCTGTGATGTATCCT 59.929 44.000 0.00 0.00 0.00 3.24
6094 8130 5.163343 TGGTAGGTTTAGCTGTGATGTATCC 60.163 44.000 0.00 0.00 0.00 2.59
6095 8131 5.914033 TGGTAGGTTTAGCTGTGATGTATC 58.086 41.667 0.00 0.00 0.00 2.24
6096 8132 5.950544 TGGTAGGTTTAGCTGTGATGTAT 57.049 39.130 0.00 0.00 0.00 2.29
6097 8133 5.748670 TTGGTAGGTTTAGCTGTGATGTA 57.251 39.130 0.00 0.00 0.00 2.29
6098 8134 4.634012 TTGGTAGGTTTAGCTGTGATGT 57.366 40.909 0.00 0.00 0.00 3.06
6099 8135 4.156008 GGTTTGGTAGGTTTAGCTGTGATG 59.844 45.833 0.00 0.00 0.00 3.07
6100 8136 4.332828 GGTTTGGTAGGTTTAGCTGTGAT 58.667 43.478 0.00 0.00 0.00 3.06
6101 8137 3.497227 GGGTTTGGTAGGTTTAGCTGTGA 60.497 47.826 0.00 0.00 0.00 3.58
6102 8138 2.817844 GGGTTTGGTAGGTTTAGCTGTG 59.182 50.000 0.00 0.00 0.00 3.66
6103 8139 2.551504 CGGGTTTGGTAGGTTTAGCTGT 60.552 50.000 0.00 0.00 0.00 4.40
6104 8140 2.081462 CGGGTTTGGTAGGTTTAGCTG 58.919 52.381 0.00 0.00 0.00 4.24
6105 8141 1.980036 TCGGGTTTGGTAGGTTTAGCT 59.020 47.619 0.00 0.00 0.00 3.32
6106 8142 2.477845 TCGGGTTTGGTAGGTTTAGC 57.522 50.000 0.00 0.00 0.00 3.09
6107 8143 3.076621 GGTTCGGGTTTGGTAGGTTTAG 58.923 50.000 0.00 0.00 0.00 1.85
6108 8144 2.441001 TGGTTCGGGTTTGGTAGGTTTA 59.559 45.455 0.00 0.00 0.00 2.01
6109 8145 1.214923 TGGTTCGGGTTTGGTAGGTTT 59.785 47.619 0.00 0.00 0.00 3.27
6110 8146 0.845337 TGGTTCGGGTTTGGTAGGTT 59.155 50.000 0.00 0.00 0.00 3.50
6111 8147 0.845337 TTGGTTCGGGTTTGGTAGGT 59.155 50.000 0.00 0.00 0.00 3.08
6112 8148 1.072648 TCTTGGTTCGGGTTTGGTAGG 59.927 52.381 0.00 0.00 0.00 3.18
6113 8149 2.224450 ACTCTTGGTTCGGGTTTGGTAG 60.224 50.000 0.00 0.00 0.00 3.18
6114 8150 1.770061 ACTCTTGGTTCGGGTTTGGTA 59.230 47.619 0.00 0.00 0.00 3.25
6115 8151 0.549469 ACTCTTGGTTCGGGTTTGGT 59.451 50.000 0.00 0.00 0.00 3.67
6116 8152 0.951558 CACTCTTGGTTCGGGTTTGG 59.048 55.000 0.00 0.00 0.00 3.28
6117 8153 0.951558 CCACTCTTGGTTCGGGTTTG 59.048 55.000 0.00 0.00 38.23 2.93
6118 8154 0.822121 GCCACTCTTGGTTCGGGTTT 60.822 55.000 0.00 0.00 45.98 3.27
6119 8155 1.228154 GCCACTCTTGGTTCGGGTT 60.228 57.895 0.00 0.00 45.98 4.11
6120 8156 1.990160 TTGCCACTCTTGGTTCGGGT 61.990 55.000 0.00 0.00 45.98 5.28
6121 8157 1.228124 TTGCCACTCTTGGTTCGGG 60.228 57.895 0.00 0.00 45.98 5.14
6122 8158 1.841663 CGTTGCCACTCTTGGTTCGG 61.842 60.000 0.00 0.00 45.98 4.30
6123 8159 1.569493 CGTTGCCACTCTTGGTTCG 59.431 57.895 0.00 0.00 45.98 3.95
6124 8160 1.282875 GCGTTGCCACTCTTGGTTC 59.717 57.895 0.00 0.00 45.98 3.62
6125 8161 3.432186 GCGTTGCCACTCTTGGTT 58.568 55.556 0.00 0.00 45.98 3.67
6135 8171 3.249973 GAGTTGGTTCGGCGTTGCC 62.250 63.158 6.85 8.46 46.75 4.52
6136 8172 2.251371 GAGTTGGTTCGGCGTTGC 59.749 61.111 6.85 0.00 0.00 4.17
6137 8173 1.952133 TCGAGTTGGTTCGGCGTTG 60.952 57.895 6.85 0.00 40.83 4.10
6138 8174 1.952635 GTCGAGTTGGTTCGGCGTT 60.953 57.895 6.85 0.00 40.83 4.84
6139 8175 2.355481 GTCGAGTTGGTTCGGCGT 60.355 61.111 6.85 0.00 40.83 5.68
6140 8176 3.110178 GGTCGAGTTGGTTCGGCG 61.110 66.667 0.00 0.00 45.62 6.46
6141 8177 1.359459 GATGGTCGAGTTGGTTCGGC 61.359 60.000 0.00 0.00 44.04 5.54
6142 8178 0.037697 TGATGGTCGAGTTGGTTCGG 60.038 55.000 0.00 0.00 40.83 4.30
6143 8179 1.459592 GTTGATGGTCGAGTTGGTTCG 59.540 52.381 0.00 0.00 41.79 3.95
6144 8180 2.489971 TGTTGATGGTCGAGTTGGTTC 58.510 47.619 0.00 0.00 0.00 3.62
6145 8181 2.631160 TGTTGATGGTCGAGTTGGTT 57.369 45.000 0.00 0.00 0.00 3.67
6146 8182 2.303022 AGATGTTGATGGTCGAGTTGGT 59.697 45.455 0.00 0.00 0.00 3.67
6147 8183 2.932614 GAGATGTTGATGGTCGAGTTGG 59.067 50.000 0.00 0.00 0.00 3.77
6148 8184 2.600420 CGAGATGTTGATGGTCGAGTTG 59.400 50.000 0.00 0.00 32.32 3.16
6149 8185 2.417379 CCGAGATGTTGATGGTCGAGTT 60.417 50.000 0.00 0.00 32.32 3.01
6150 8186 1.135139 CCGAGATGTTGATGGTCGAGT 59.865 52.381 0.00 0.00 32.32 4.18
6151 8187 1.536922 CCCGAGATGTTGATGGTCGAG 60.537 57.143 0.00 0.00 32.32 4.04
6152 8188 0.459899 CCCGAGATGTTGATGGTCGA 59.540 55.000 0.00 0.00 32.32 4.20
6153 8189 0.459899 TCCCGAGATGTTGATGGTCG 59.540 55.000 0.00 0.00 0.00 4.79
6154 8190 2.280628 GTTCCCGAGATGTTGATGGTC 58.719 52.381 0.00 0.00 0.00 4.02
6155 8191 1.065418 GGTTCCCGAGATGTTGATGGT 60.065 52.381 0.00 0.00 0.00 3.55
6156 8192 1.065491 TGGTTCCCGAGATGTTGATGG 60.065 52.381 0.00 0.00 0.00 3.51
6157 8193 2.401583 TGGTTCCCGAGATGTTGATG 57.598 50.000 0.00 0.00 0.00 3.07
6158 8194 3.433306 TTTGGTTCCCGAGATGTTGAT 57.567 42.857 0.00 0.00 0.00 2.57
6159 8195 2.882137 GTTTTGGTTCCCGAGATGTTGA 59.118 45.455 0.00 0.00 0.00 3.18
6160 8196 2.030274 GGTTTTGGTTCCCGAGATGTTG 60.030 50.000 0.00 0.00 0.00 3.33
6161 8197 2.235891 GGTTTTGGTTCCCGAGATGTT 58.764 47.619 0.00 0.00 0.00 2.71
6162 8198 1.880646 CGGTTTTGGTTCCCGAGATGT 60.881 52.381 0.00 0.00 44.41 3.06
6163 8199 0.802494 CGGTTTTGGTTCCCGAGATG 59.198 55.000 0.00 0.00 44.41 2.90
6164 8200 0.322187 CCGGTTTTGGTTCCCGAGAT 60.322 55.000 0.00 0.00 44.41 2.75
6165 8201 1.071814 CCGGTTTTGGTTCCCGAGA 59.928 57.895 0.00 0.00 44.41 4.04
6166 8202 1.969589 CCCGGTTTTGGTTCCCGAG 60.970 63.158 0.00 0.00 44.41 4.63
6167 8203 2.113562 CCCGGTTTTGGTTCCCGA 59.886 61.111 0.00 0.00 44.41 5.14
6168 8204 2.986979 CCCCGGTTTTGGTTCCCG 60.987 66.667 0.00 0.00 41.37 5.14
6169 8205 1.904865 GTCCCCGGTTTTGGTTCCC 60.905 63.158 0.00 0.00 0.00 3.97
6170 8206 1.152715 TGTCCCCGGTTTTGGTTCC 60.153 57.895 0.00 0.00 0.00 3.62
6171 8207 1.457823 GGTGTCCCCGGTTTTGGTTC 61.458 60.000 0.00 0.00 0.00 3.62
6172 8208 1.456145 GGTGTCCCCGGTTTTGGTT 60.456 57.895 0.00 0.00 0.00 3.67
6173 8209 2.196502 GGTGTCCCCGGTTTTGGT 59.803 61.111 0.00 0.00 0.00 3.67
6188 8224 4.135153 ATCTTGCTCGCTCGCGGT 62.135 61.111 6.13 0.00 40.25 5.68
6189 8225 3.624300 CATCTTGCTCGCTCGCGG 61.624 66.667 6.13 0.00 40.25 6.46
6190 8226 3.624300 CCATCTTGCTCGCTCGCG 61.624 66.667 0.00 0.00 41.35 5.87
6191 8227 3.934684 GCCATCTTGCTCGCTCGC 61.935 66.667 0.00 0.00 0.00 5.03
6192 8228 3.624300 CGCCATCTTGCTCGCTCG 61.624 66.667 0.00 0.00 0.00 5.03
6193 8229 3.934684 GCGCCATCTTGCTCGCTC 61.935 66.667 0.00 0.00 43.70 5.03
6196 8232 2.817423 GAAGGCGCCATCTTGCTCG 61.817 63.158 31.54 0.00 0.00 5.03
6197 8233 1.308069 TTGAAGGCGCCATCTTGCTC 61.308 55.000 29.82 13.92 0.00 4.26
6198 8234 1.303561 TTGAAGGCGCCATCTTGCT 60.304 52.632 29.82 4.57 0.00 3.91
6199 8235 1.138247 CTTGAAGGCGCCATCTTGC 59.862 57.895 29.82 8.91 0.00 4.01
6200 8236 1.131883 CTTCTTGAAGGCGCCATCTTG 59.868 52.381 29.82 21.68 0.00 3.02
6201 8237 1.457346 CTTCTTGAAGGCGCCATCTT 58.543 50.000 29.82 16.13 0.00 2.40
6202 8238 0.393537 CCTTCTTGAAGGCGCCATCT 60.394 55.000 29.82 14.21 32.43 2.90
6203 8239 0.392998 TCCTTCTTGAAGGCGCCATC 60.393 55.000 31.54 27.75 39.80 3.51
6204 8240 0.393537 CTCCTTCTTGAAGGCGCCAT 60.394 55.000 31.54 19.26 39.80 4.40
6205 8241 1.003355 CTCCTTCTTGAAGGCGCCA 60.003 57.895 31.54 4.59 39.80 5.69
6206 8242 1.746991 CCTCCTTCTTGAAGGCGCC 60.747 63.158 21.89 21.89 39.80 6.53
6207 8243 1.021920 GTCCTCCTTCTTGAAGGCGC 61.022 60.000 21.16 0.00 39.80 6.53
6208 8244 0.737715 CGTCCTCCTTCTTGAAGGCG 60.738 60.000 21.16 16.22 39.80 5.52
6209 8245 0.608640 TCGTCCTCCTTCTTGAAGGC 59.391 55.000 21.16 8.97 39.80 4.35
6210 8246 1.402984 CGTCGTCCTCCTTCTTGAAGG 60.403 57.143 20.21 20.21 41.35 3.46
6211 8247 1.269998 ACGTCGTCCTCCTTCTTGAAG 59.730 52.381 3.55 3.55 0.00 3.02
6212 8248 1.268899 GACGTCGTCCTCCTTCTTGAA 59.731 52.381 14.60 0.00 0.00 2.69
6213 8249 0.879765 GACGTCGTCCTCCTTCTTGA 59.120 55.000 14.60 0.00 0.00 3.02
6214 8250 0.454620 CGACGTCGTCCTCCTTCTTG 60.455 60.000 29.08 0.00 34.11 3.02
6215 8251 0.604780 TCGACGTCGTCCTCCTTCTT 60.605 55.000 34.40 0.00 40.80 2.52
6216 8252 1.004080 TCGACGTCGTCCTCCTTCT 60.004 57.895 34.40 0.00 40.80 2.85
6217 8253 1.018226 TCTCGACGTCGTCCTCCTTC 61.018 60.000 34.40 0.00 40.80 3.46
6218 8254 1.004080 TCTCGACGTCGTCCTCCTT 60.004 57.895 34.40 0.00 40.80 3.36
6219 8255 1.741032 GTCTCGACGTCGTCCTCCT 60.741 63.158 34.40 0.00 40.80 3.69
6220 8256 2.783935 GTCTCGACGTCGTCCTCC 59.216 66.667 34.40 16.73 40.80 4.30
6255 8291 1.179814 CCCTAGGTCCGATTCCTCCG 61.180 65.000 8.29 0.00 36.60 4.63
6256 8292 0.105607 ACCCTAGGTCCGATTCCTCC 60.106 60.000 8.29 0.00 36.60 4.30
6257 8293 1.330234 GACCCTAGGTCCGATTCCTC 58.670 60.000 8.29 0.00 46.19 3.71
6258 8294 3.535574 GACCCTAGGTCCGATTCCT 57.464 57.895 8.29 0.00 46.19 3.36
6277 8313 2.430610 CCTCTTCGAGCTCAGGGGG 61.431 68.421 15.40 8.27 0.00 5.40
6278 8314 2.430610 CCCTCTTCGAGCTCAGGGG 61.431 68.421 23.52 18.30 41.96 4.79
6279 8315 2.430610 CCCCTCTTCGAGCTCAGGG 61.431 68.421 24.05 24.05 44.92 4.45
6280 8316 3.087666 GCCCCTCTTCGAGCTCAGG 62.088 68.421 15.40 12.51 0.00 3.86
6281 8317 2.498726 GCCCCTCTTCGAGCTCAG 59.501 66.667 15.40 4.49 0.00 3.35
6282 8318 3.452786 CGCCCCTCTTCGAGCTCA 61.453 66.667 15.40 0.00 0.00 4.26
6283 8319 4.882396 GCGCCCCTCTTCGAGCTC 62.882 72.222 2.73 2.73 0.00 4.09
6303 8339 2.742372 CGTTGTCAAGGCCCTCGG 60.742 66.667 0.00 0.00 0.00 4.63
6304 8340 3.423154 GCGTTGTCAAGGCCCTCG 61.423 66.667 17.52 3.12 36.34 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.