Multiple sequence alignment - TraesCS2D01G112900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G112900 chr2D 100.000 2818 0 0 1 2818 62554370 62551553 0.000000e+00 5204.0
1 TraesCS2D01G112900 chr2D 78.010 764 97 43 1073 1821 62289851 62289144 5.620000e-112 414.0
2 TraesCS2D01G112900 chr2D 88.581 289 27 4 1047 1335 253618385 253618667 2.080000e-91 346.0
3 TraesCS2D01G112900 chr2D 73.928 863 133 66 597 1433 62560218 62559422 2.150000e-66 263.0
4 TraesCS2D01G112900 chr2D 79.448 326 47 15 1518 1833 62559258 62558943 2.200000e-51 213.0
5 TraesCS2D01G112900 chr2D 89.286 168 14 3 283 448 67498232 67498067 1.020000e-49 207.0
6 TraesCS2D01G112900 chr2D 76.169 449 74 23 1025 1446 62565168 62564726 3.680000e-49 206.0
7 TraesCS2D01G112900 chr2A 91.006 1123 68 16 891 1986 63589190 63588074 0.000000e+00 1483.0
8 TraesCS2D01G112900 chr2A 76.963 777 125 36 1050 1821 63138212 63137485 7.320000e-106 394.0
9 TraesCS2D01G112900 chr2A 77.778 522 68 32 935 1433 63607378 63606882 7.690000e-71 278.0
10 TraesCS2D01G112900 chr2A 82.298 322 41 15 1518 1836 63606771 63606463 5.990000e-67 265.0
11 TraesCS2D01G112900 chr2A 94.186 172 8 2 692 861 63589357 63589186 7.740000e-66 261.0
12 TraesCS2D01G112900 chr2B 93.697 825 33 6 2003 2818 98255735 98254921 0.000000e+00 1218.0
13 TraesCS2D01G112900 chr2B 87.408 818 83 10 2003 2818 98153358 98152559 0.000000e+00 922.0
14 TraesCS2D01G112900 chr2B 87.774 638 42 10 649 1277 98257454 98256844 0.000000e+00 713.0
15 TraesCS2D01G112900 chr2B 90.239 502 35 8 289 788 98251840 98251351 0.000000e+00 643.0
16 TraesCS2D01G112900 chr2B 88.469 529 47 9 1081 1604 98250135 98249616 6.630000e-176 627.0
17 TraesCS2D01G112900 chr2B 92.841 433 18 3 1273 1694 98256819 98256389 1.430000e-172 616.0
18 TraesCS2D01G112900 chr2B 77.345 821 111 55 1050 1833 98264700 98263918 1.560000e-112 416.0
19 TraesCS2D01G112900 chr2B 77.720 763 111 38 1073 1819 97933870 97933151 2.020000e-111 412.0
20 TraesCS2D01G112900 chr2B 90.338 207 11 4 1725 1928 98256325 98256125 2.150000e-66 263.0
21 TraesCS2D01G112900 chr2B 90.303 165 16 0 284 448 103193804 103193968 1.700000e-52 217.0
22 TraesCS2D01G112900 chr2B 79.167 312 53 11 1518 1821 98286300 98285993 3.680000e-49 206.0
23 TraesCS2D01G112900 chr3D 83.430 344 46 10 111 448 44966163 44966501 2.730000e-80 309.0
24 TraesCS2D01G112900 chr3D 94.118 51 3 0 400 450 8417338 8417388 8.370000e-11 78.7
25 TraesCS2D01G112900 chr4B 81.749 263 40 7 116 376 656650746 656650490 2.200000e-51 213.0
26 TraesCS2D01G112900 chr7B 80.508 236 42 3 110 344 677413261 677413493 8.020000e-41 178.0
27 TraesCS2D01G112900 chr4D 85.542 166 23 1 282 446 7033828 7033993 3.730000e-39 172.0
28 TraesCS2D01G112900 chr5A 84.940 166 25 0 283 448 1724873 1725038 4.830000e-38 169.0
29 TraesCS2D01G112900 chr5A 77.966 236 49 2 110 344 564748299 564748532 8.140000e-31 145.0
30 TraesCS2D01G112900 chr6A 86.755 151 19 1 125 274 607885218 607885368 1.740000e-37 167.0
31 TraesCS2D01G112900 chr3A 81.000 200 38 0 145 344 154380606 154380805 2.910000e-35 159.0
32 TraesCS2D01G112900 chr1D 79.012 243 44 6 105 344 67879947 67880185 2.910000e-35 159.0
33 TraesCS2D01G112900 chr6D 78.723 235 48 1 110 344 115077163 115077395 3.760000e-34 156.0
34 TraesCS2D01G112900 chr5D 83.537 164 25 1 108 269 207961864 207961701 4.860000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G112900 chr2D 62551553 62554370 2817 True 5204.0 5204 100.000000 1 2818 1 chr2D.!!$R2 2817
1 TraesCS2D01G112900 chr2D 62289144 62289851 707 True 414.0 414 78.010000 1073 1821 1 chr2D.!!$R1 748
2 TraesCS2D01G112900 chr2D 62558943 62560218 1275 True 238.0 263 76.688000 597 1833 2 chr2D.!!$R5 1236
3 TraesCS2D01G112900 chr2A 63588074 63589357 1283 True 872.0 1483 92.596000 692 1986 2 chr2A.!!$R2 1294
4 TraesCS2D01G112900 chr2A 63137485 63138212 727 True 394.0 394 76.963000 1050 1821 1 chr2A.!!$R1 771
5 TraesCS2D01G112900 chr2A 63606463 63607378 915 True 271.5 278 80.038000 935 1836 2 chr2A.!!$R3 901
6 TraesCS2D01G112900 chr2B 98152559 98153358 799 True 922.0 922 87.408000 2003 2818 1 chr2B.!!$R2 815
7 TraesCS2D01G112900 chr2B 98249616 98257454 7838 True 680.0 1218 90.559667 289 2818 6 chr2B.!!$R5 2529
8 TraesCS2D01G112900 chr2B 98263918 98264700 782 True 416.0 416 77.345000 1050 1833 1 chr2B.!!$R3 783
9 TraesCS2D01G112900 chr2B 97933151 97933870 719 True 412.0 412 77.720000 1073 1819 1 chr2B.!!$R1 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 506 0.028110 GCGCATTCCCTCAAACGATC 59.972 55.0 0.3 0.0 0.00 3.69 F
565 566 0.110486 ACCAAGGAAGGTTGCATCGT 59.890 50.0 0.0 0.0 39.34 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 1848 0.110104 GGGGCTGGAGAATGGAGATG 59.890 60.0 0.0 0.0 0.00 2.90 R
2031 2589 0.179084 CGTTGGATATGCCCGTCAGT 60.179 55.0 0.0 0.0 34.97 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.590850 AGTCCTGACAAAATTTTCCTGC 57.409 40.909 0.00 0.00 0.00 4.85
24 25 4.218312 AGTCCTGACAAAATTTTCCTGCT 58.782 39.130 0.00 0.00 0.00 4.24
25 26 5.385198 AGTCCTGACAAAATTTTCCTGCTA 58.615 37.500 0.00 0.00 0.00 3.49
26 27 6.012745 AGTCCTGACAAAATTTTCCTGCTAT 58.987 36.000 0.00 0.00 0.00 2.97
27 28 6.151817 AGTCCTGACAAAATTTTCCTGCTATC 59.848 38.462 0.00 0.00 0.00 2.08
28 29 6.009589 TCCTGACAAAATTTTCCTGCTATCA 58.990 36.000 0.00 0.00 0.00 2.15
29 30 6.664816 TCCTGACAAAATTTTCCTGCTATCAT 59.335 34.615 0.00 0.00 0.00 2.45
30 31 6.755141 CCTGACAAAATTTTCCTGCTATCATG 59.245 38.462 0.00 0.00 0.00 3.07
31 32 7.363181 CCTGACAAAATTTTCCTGCTATCATGA 60.363 37.037 0.00 0.00 0.00 3.07
32 33 7.315142 TGACAAAATTTTCCTGCTATCATGAC 58.685 34.615 0.00 0.00 0.00 3.06
33 34 7.039853 TGACAAAATTTTCCTGCTATCATGACA 60.040 33.333 0.00 0.00 0.00 3.58
34 35 7.844009 ACAAAATTTTCCTGCTATCATGACAT 58.156 30.769 0.00 0.00 0.00 3.06
35 36 8.316214 ACAAAATTTTCCTGCTATCATGACATT 58.684 29.630 0.00 0.00 0.00 2.71
36 37 9.158233 CAAAATTTTCCTGCTATCATGACATTT 57.842 29.630 0.00 0.00 0.00 2.32
37 38 9.729281 AAAATTTTCCTGCTATCATGACATTTT 57.271 25.926 0.00 0.00 0.00 1.82
38 39 9.729281 AAATTTTCCTGCTATCATGACATTTTT 57.271 25.926 0.00 0.00 0.00 1.94
67 68 9.669353 CAACATGACAAGTATTTCTATAATGGC 57.331 33.333 0.00 0.00 0.00 4.40
68 69 8.978874 ACATGACAAGTATTTCTATAATGGCA 57.021 30.769 0.00 0.00 31.56 4.92
69 70 9.578576 ACATGACAAGTATTTCTATAATGGCAT 57.421 29.630 0.00 0.00 35.78 4.40
70 71 9.836076 CATGACAAGTATTTCTATAATGGCATG 57.164 33.333 0.00 4.49 41.06 4.06
71 72 7.874940 TGACAAGTATTTCTATAATGGCATGC 58.125 34.615 9.90 9.90 0.00 4.06
72 73 7.040478 TGACAAGTATTTCTATAATGGCATGCC 60.040 37.037 30.54 30.54 0.00 4.40
106 107 5.666969 TTATAGCATGAAATTCCCGAACG 57.333 39.130 0.00 0.00 0.00 3.95
107 108 1.821216 AGCATGAAATTCCCGAACGT 58.179 45.000 0.00 0.00 0.00 3.99
108 109 2.159382 AGCATGAAATTCCCGAACGTT 58.841 42.857 0.00 0.00 0.00 3.99
109 110 3.340034 AGCATGAAATTCCCGAACGTTA 58.660 40.909 0.00 0.00 0.00 3.18
110 111 3.374058 AGCATGAAATTCCCGAACGTTAG 59.626 43.478 0.00 0.00 0.00 2.34
111 112 3.372822 GCATGAAATTCCCGAACGTTAGA 59.627 43.478 10.21 0.41 0.00 2.10
112 113 4.494199 GCATGAAATTCCCGAACGTTAGAG 60.494 45.833 10.21 0.00 0.00 2.43
113 114 2.997986 TGAAATTCCCGAACGTTAGAGC 59.002 45.455 10.21 0.00 0.00 4.09
114 115 1.636988 AATTCCCGAACGTTAGAGCG 58.363 50.000 10.21 5.05 37.94 5.03
116 117 0.109597 TTCCCGAACGTTAGAGCGTC 60.110 55.000 10.21 0.00 45.00 5.19
117 118 0.957395 TCCCGAACGTTAGAGCGTCT 60.957 55.000 10.21 0.00 45.00 4.18
118 119 0.522915 CCCGAACGTTAGAGCGTCTC 60.523 60.000 10.21 0.00 45.00 3.36
119 120 0.522915 CCGAACGTTAGAGCGTCTCC 60.523 60.000 10.21 0.00 45.00 3.71
120 121 0.167470 CGAACGTTAGAGCGTCTCCA 59.833 55.000 0.00 0.00 45.00 3.86
121 122 1.400629 CGAACGTTAGAGCGTCTCCAA 60.401 52.381 0.00 0.00 45.00 3.53
122 123 1.984297 GAACGTTAGAGCGTCTCCAAC 59.016 52.381 0.00 7.65 45.00 3.77
123 124 0.956633 ACGTTAGAGCGTCTCCAACA 59.043 50.000 14.50 0.00 41.71 3.33
124 125 1.068472 ACGTTAGAGCGTCTCCAACAG 60.068 52.381 14.50 10.81 41.71 3.16
125 126 1.199327 CGTTAGAGCGTCTCCAACAGA 59.801 52.381 14.50 0.00 33.07 3.41
131 132 2.049063 GTCTCCAACAGACGCGCT 60.049 61.111 5.73 0.50 42.43 5.92
132 133 1.211969 GTCTCCAACAGACGCGCTA 59.788 57.895 5.73 0.00 42.43 4.26
133 134 0.388134 GTCTCCAACAGACGCGCTAA 60.388 55.000 5.73 0.00 42.43 3.09
134 135 0.315886 TCTCCAACAGACGCGCTAAA 59.684 50.000 5.73 0.00 0.00 1.85
135 136 1.067142 TCTCCAACAGACGCGCTAAAT 60.067 47.619 5.73 0.00 0.00 1.40
136 137 2.164827 TCTCCAACAGACGCGCTAAATA 59.835 45.455 5.73 0.00 0.00 1.40
137 138 2.927477 CTCCAACAGACGCGCTAAATAA 59.073 45.455 5.73 0.00 0.00 1.40
138 139 2.927477 TCCAACAGACGCGCTAAATAAG 59.073 45.455 5.73 0.00 0.00 1.73
155 156 4.541020 GCTGCTCGCTGGAAAAAC 57.459 55.556 0.00 0.00 35.14 2.43
156 157 1.441016 GCTGCTCGCTGGAAAAACG 60.441 57.895 0.00 0.00 35.14 3.60
157 158 1.207593 CTGCTCGCTGGAAAAACGG 59.792 57.895 0.00 0.00 0.00 4.44
158 159 2.126850 GCTCGCTGGAAAAACGGC 60.127 61.111 0.00 0.00 39.37 5.68
159 160 2.617274 GCTCGCTGGAAAAACGGCT 61.617 57.895 0.00 0.00 40.59 5.52
160 161 1.296056 GCTCGCTGGAAAAACGGCTA 61.296 55.000 0.00 0.00 40.59 3.93
161 162 1.369625 CTCGCTGGAAAAACGGCTAT 58.630 50.000 0.00 0.00 40.59 2.97
162 163 1.062587 CTCGCTGGAAAAACGGCTATG 59.937 52.381 0.00 0.00 40.59 2.23
163 164 0.802494 CGCTGGAAAAACGGCTATGT 59.198 50.000 0.00 0.00 40.59 2.29
164 165 2.004017 CGCTGGAAAAACGGCTATGTA 58.996 47.619 0.00 0.00 40.59 2.29
165 166 2.030457 CGCTGGAAAAACGGCTATGTAG 59.970 50.000 0.00 0.00 40.59 2.74
184 185 3.898640 GCGCGCGACCGAAAGTAG 61.899 66.667 37.18 0.00 36.29 2.57
185 186 3.898640 CGCGCGACCGAAAGTAGC 61.899 66.667 28.94 0.00 43.10 3.58
188 189 2.506438 GCGACCGAAAGTAGCGCT 60.506 61.111 17.26 17.26 43.85 5.92
189 190 2.506345 GCGACCGAAAGTAGCGCTC 61.506 63.158 16.34 5.88 43.85 5.03
190 191 1.872679 CGACCGAAAGTAGCGCTCC 60.873 63.158 16.34 0.52 0.00 4.70
191 192 1.214589 GACCGAAAGTAGCGCTCCA 59.785 57.895 16.34 0.00 0.00 3.86
192 193 0.802607 GACCGAAAGTAGCGCTCCAG 60.803 60.000 16.34 0.15 0.00 3.86
193 194 2.167861 CCGAAAGTAGCGCTCCAGC 61.168 63.158 16.34 2.71 37.78 4.85
194 195 1.446099 CGAAAGTAGCGCTCCAGCA 60.446 57.895 16.34 0.00 42.21 4.41
195 196 1.416813 CGAAAGTAGCGCTCCAGCAG 61.417 60.000 16.34 0.00 42.21 4.24
196 197 0.390472 GAAAGTAGCGCTCCAGCAGT 60.390 55.000 16.34 0.00 42.21 4.40
197 198 0.390472 AAAGTAGCGCTCCAGCAGTC 60.390 55.000 16.34 0.00 42.21 3.51
198 199 2.549611 AAGTAGCGCTCCAGCAGTCG 62.550 60.000 16.34 0.00 42.21 4.18
199 200 4.498520 TAGCGCTCCAGCAGTCGC 62.499 66.667 16.34 0.00 43.68 5.19
203 204 4.724602 GCTCCAGCAGTCGCGTCA 62.725 66.667 5.77 0.00 45.49 4.35
204 205 2.182791 CTCCAGCAGTCGCGTCAT 59.817 61.111 5.77 0.00 45.49 3.06
205 206 1.433471 CTCCAGCAGTCGCGTCATA 59.567 57.895 5.77 0.00 45.49 2.15
206 207 0.179137 CTCCAGCAGTCGCGTCATAA 60.179 55.000 5.77 0.00 45.49 1.90
207 208 0.459899 TCCAGCAGTCGCGTCATAAT 59.540 50.000 5.77 0.00 45.49 1.28
208 209 0.855349 CCAGCAGTCGCGTCATAATC 59.145 55.000 5.77 0.00 45.49 1.75
209 210 0.855349 CAGCAGTCGCGTCATAATCC 59.145 55.000 5.77 0.00 45.49 3.01
210 211 0.249489 AGCAGTCGCGTCATAATCCC 60.249 55.000 5.77 0.00 45.49 3.85
211 212 1.548973 GCAGTCGCGTCATAATCCCG 61.549 60.000 5.77 0.00 0.00 5.14
212 213 0.248907 CAGTCGCGTCATAATCCCGT 60.249 55.000 5.77 0.00 0.00 5.28
213 214 0.248907 AGTCGCGTCATAATCCCGTG 60.249 55.000 5.77 0.00 0.00 4.94
214 215 1.590525 TCGCGTCATAATCCCGTGC 60.591 57.895 5.77 0.00 32.52 5.34
215 216 2.927618 CGCGTCATAATCCCGTGCG 61.928 63.158 0.00 0.00 38.04 5.34
216 217 2.928361 CGTCATAATCCCGTGCGC 59.072 61.111 0.00 0.00 0.00 6.09
217 218 2.927618 CGTCATAATCCCGTGCGCG 61.928 63.158 13.88 13.88 37.95 6.86
227 228 2.172419 CGTGCGCGGTAAACAAGG 59.828 61.111 12.87 0.00 0.00 3.61
228 229 2.600475 CGTGCGCGGTAAACAAGGT 61.600 57.895 12.87 0.00 0.00 3.50
229 230 1.650363 GTGCGCGGTAAACAAGGTT 59.350 52.632 8.83 0.00 0.00 3.50
230 231 0.385098 GTGCGCGGTAAACAAGGTTC 60.385 55.000 8.83 0.00 0.00 3.62
231 232 0.814410 TGCGCGGTAAACAAGGTTCA 60.814 50.000 8.83 0.00 0.00 3.18
232 233 0.110373 GCGCGGTAAACAAGGTTCAG 60.110 55.000 8.83 0.00 0.00 3.02
233 234 0.110373 CGCGGTAAACAAGGTTCAGC 60.110 55.000 0.00 0.00 0.00 4.26
234 235 0.110373 GCGGTAAACAAGGTTCAGCG 60.110 55.000 0.00 0.00 0.00 5.18
235 236 0.110373 CGGTAAACAAGGTTCAGCGC 60.110 55.000 0.00 0.00 0.00 5.92
236 237 0.110373 GGTAAACAAGGTTCAGCGCG 60.110 55.000 0.00 0.00 0.00 6.86
237 238 0.724785 GTAAACAAGGTTCAGCGCGC 60.725 55.000 26.66 26.66 0.00 6.86
238 239 0.882927 TAAACAAGGTTCAGCGCGCT 60.883 50.000 31.32 31.32 0.00 5.92
239 240 2.392613 AAACAAGGTTCAGCGCGCTG 62.393 55.000 46.54 46.54 44.86 5.18
251 252 2.353376 GCGCTGCGAAAAACTGCA 60.353 55.556 28.07 0.00 39.13 4.41
252 253 1.730547 GCGCTGCGAAAAACTGCAT 60.731 52.632 28.07 0.00 40.89 3.96
253 254 1.668253 GCGCTGCGAAAAACTGCATC 61.668 55.000 28.07 0.00 40.89 3.91
254 255 1.390664 CGCTGCGAAAAACTGCATCG 61.391 55.000 18.66 2.33 42.99 3.84
257 258 3.352536 CGAAAAACTGCATCGCGC 58.647 55.556 0.00 0.00 42.89 6.86
258 259 2.479782 CGAAAAACTGCATCGCGCG 61.480 57.895 26.76 26.76 46.97 6.86
259 260 2.767919 GAAAAACTGCATCGCGCGC 61.768 57.895 27.95 23.91 46.97 6.86
260 261 3.254014 AAAAACTGCATCGCGCGCT 62.254 52.632 30.48 14.34 46.97 5.92
261 262 3.933900 AAAACTGCATCGCGCGCTG 62.934 57.895 30.48 27.73 46.97 5.18
267 268 2.967076 CATCGCGCGCTGGGTATT 60.967 61.111 30.48 2.39 0.00 1.89
268 269 2.203015 ATCGCGCGCTGGGTATTT 60.203 55.556 30.48 1.24 0.00 1.40
269 270 2.534019 ATCGCGCGCTGGGTATTTG 61.534 57.895 30.48 10.19 0.00 2.32
270 271 4.236416 CGCGCGCTGGGTATTTGG 62.236 66.667 30.48 5.07 0.00 3.28
271 272 3.131478 GCGCGCTGGGTATTTGGT 61.131 61.111 26.67 0.00 0.00 3.67
272 273 2.791256 CGCGCTGGGTATTTGGTG 59.209 61.111 5.56 0.00 0.00 4.17
273 274 2.489751 GCGCTGGGTATTTGGTGC 59.510 61.111 0.00 0.00 0.00 5.01
274 275 3.063743 GCGCTGGGTATTTGGTGCC 62.064 63.158 0.00 0.00 0.00 5.01
280 281 2.976099 GGTATTTGGTGCCCTTGCT 58.024 52.632 0.00 0.00 38.71 3.91
281 282 0.817654 GGTATTTGGTGCCCTTGCTC 59.182 55.000 0.00 0.00 38.71 4.26
282 283 0.451783 GTATTTGGTGCCCTTGCTCG 59.548 55.000 0.00 0.00 38.71 5.03
283 284 0.037590 TATTTGGTGCCCTTGCTCGT 59.962 50.000 0.00 0.00 38.71 4.18
284 285 1.526575 ATTTGGTGCCCTTGCTCGTG 61.527 55.000 0.00 0.00 38.71 4.35
285 286 2.902423 TTTGGTGCCCTTGCTCGTGT 62.902 55.000 0.00 0.00 38.71 4.49
286 287 3.357079 GGTGCCCTTGCTCGTGTG 61.357 66.667 0.00 0.00 38.71 3.82
287 288 4.030452 GTGCCCTTGCTCGTGTGC 62.030 66.667 0.00 0.00 38.71 4.57
291 292 4.081030 CCTTGCTCGTGTGCGCTG 62.081 66.667 9.73 0.00 38.14 5.18
292 293 3.341043 CTTGCTCGTGTGCGCTGT 61.341 61.111 9.73 0.00 38.14 4.40
293 294 2.021584 CTTGCTCGTGTGCGCTGTA 61.022 57.895 9.73 0.00 38.14 2.74
294 295 1.556591 CTTGCTCGTGTGCGCTGTAA 61.557 55.000 9.73 0.00 38.14 2.41
295 296 1.154814 TTGCTCGTGTGCGCTGTAAA 61.155 50.000 9.73 0.00 38.14 2.01
296 297 1.154814 TGCTCGTGTGCGCTGTAAAA 61.155 50.000 9.73 0.00 38.14 1.52
297 298 0.165944 GCTCGTGTGCGCTGTAAAAT 59.834 50.000 9.73 0.00 38.14 1.82
298 299 1.786928 GCTCGTGTGCGCTGTAAAATC 60.787 52.381 9.73 0.00 38.14 2.17
299 300 1.726791 CTCGTGTGCGCTGTAAAATCT 59.273 47.619 9.73 0.00 38.14 2.40
300 301 1.459209 TCGTGTGCGCTGTAAAATCTG 59.541 47.619 9.73 0.00 38.14 2.90
301 302 1.464023 CGTGTGCGCTGTAAAATCTGG 60.464 52.381 9.73 0.00 0.00 3.86
302 303 1.135689 GTGTGCGCTGTAAAATCTGGG 60.136 52.381 9.73 0.00 0.00 4.45
303 304 0.179163 GTGCGCTGTAAAATCTGGGC 60.179 55.000 9.73 0.00 42.28 5.36
304 305 0.322456 TGCGCTGTAAAATCTGGGCT 60.322 50.000 9.73 0.00 42.37 5.19
305 306 0.099436 GCGCTGTAAAATCTGGGCTG 59.901 55.000 0.00 0.00 40.19 4.85
306 307 0.099436 CGCTGTAAAATCTGGGCTGC 59.901 55.000 0.00 0.00 0.00 5.25
307 308 1.467920 GCTGTAAAATCTGGGCTGCT 58.532 50.000 0.00 0.00 0.00 4.24
308 309 1.133790 GCTGTAAAATCTGGGCTGCTG 59.866 52.381 0.00 0.00 0.00 4.41
309 310 1.133790 CTGTAAAATCTGGGCTGCTGC 59.866 52.381 7.10 7.10 38.76 5.25
310 311 1.176527 GTAAAATCTGGGCTGCTGCA 58.823 50.000 17.89 0.88 41.91 4.41
311 312 1.133790 GTAAAATCTGGGCTGCTGCAG 59.866 52.381 24.80 24.80 41.91 4.41
312 313 1.255667 AAAATCTGGGCTGCTGCAGG 61.256 55.000 29.05 13.77 41.91 4.85
313 314 2.436596 AAATCTGGGCTGCTGCAGGT 62.437 55.000 29.05 0.10 41.91 4.00
314 315 3.640257 ATCTGGGCTGCTGCAGGTG 62.640 63.158 29.05 7.40 41.91 4.00
338 339 4.715523 CCGGAATGGGTGCCGTGT 62.716 66.667 0.00 0.00 45.85 4.49
339 340 2.671619 CGGAATGGGTGCCGTGTT 60.672 61.111 0.00 0.00 42.49 3.32
340 341 2.265182 CGGAATGGGTGCCGTGTTT 61.265 57.895 0.00 0.00 42.49 2.83
341 342 1.801309 CGGAATGGGTGCCGTGTTTT 61.801 55.000 0.00 0.00 42.49 2.43
342 343 0.391228 GGAATGGGTGCCGTGTTTTT 59.609 50.000 0.00 0.00 0.00 1.94
343 344 1.496934 GAATGGGTGCCGTGTTTTTG 58.503 50.000 0.00 0.00 0.00 2.44
344 345 0.827368 AATGGGTGCCGTGTTTTTGT 59.173 45.000 0.00 0.00 0.00 2.83
345 346 0.103937 ATGGGTGCCGTGTTTTTGTG 59.896 50.000 0.00 0.00 0.00 3.33
346 347 1.880796 GGGTGCCGTGTTTTTGTGC 60.881 57.895 0.00 0.00 0.00 4.57
347 348 1.153745 GGTGCCGTGTTTTTGTGCA 60.154 52.632 0.00 0.00 0.00 4.57
348 349 0.529555 GGTGCCGTGTTTTTGTGCAT 60.530 50.000 0.00 0.00 34.04 3.96
349 350 1.269309 GGTGCCGTGTTTTTGTGCATA 60.269 47.619 0.00 0.00 34.04 3.14
350 351 2.609244 GGTGCCGTGTTTTTGTGCATAT 60.609 45.455 0.00 0.00 34.04 1.78
351 352 2.408032 GTGCCGTGTTTTTGTGCATATG 59.592 45.455 0.00 0.00 34.04 1.78
352 353 2.294512 TGCCGTGTTTTTGTGCATATGA 59.705 40.909 6.97 0.00 0.00 2.15
353 354 3.243535 TGCCGTGTTTTTGTGCATATGAA 60.244 39.130 6.97 0.00 0.00 2.57
354 355 3.738282 GCCGTGTTTTTGTGCATATGAAA 59.262 39.130 6.97 0.00 0.00 2.69
355 356 4.210120 GCCGTGTTTTTGTGCATATGAAAA 59.790 37.500 6.97 1.80 0.00 2.29
356 357 5.277058 GCCGTGTTTTTGTGCATATGAAAAA 60.277 36.000 6.97 8.03 0.00 1.94
357 358 6.126079 CCGTGTTTTTGTGCATATGAAAAAC 58.874 36.000 23.83 23.83 44.39 2.43
358 359 6.126079 CGTGTTTTTGTGCATATGAAAAACC 58.874 36.000 25.70 19.73 43.89 3.27
359 360 6.019156 CGTGTTTTTGTGCATATGAAAAACCT 60.019 34.615 25.70 0.00 43.89 3.50
360 361 7.344441 GTGTTTTTGTGCATATGAAAAACCTC 58.656 34.615 25.70 19.36 43.89 3.85
361 362 7.224557 GTGTTTTTGTGCATATGAAAAACCTCT 59.775 33.333 25.70 0.00 43.89 3.69
362 363 7.768120 TGTTTTTGTGCATATGAAAAACCTCTT 59.232 29.630 25.70 0.00 43.89 2.85
363 364 7.945033 TTTTGTGCATATGAAAAACCTCTTC 57.055 32.000 6.97 0.00 0.00 2.87
364 365 5.295431 TGTGCATATGAAAAACCTCTTCG 57.705 39.130 6.97 0.00 0.00 3.79
365 366 4.759693 TGTGCATATGAAAAACCTCTTCGT 59.240 37.500 6.97 0.00 0.00 3.85
366 367 5.106712 TGTGCATATGAAAAACCTCTTCGTC 60.107 40.000 6.97 0.00 0.00 4.20
367 368 4.092821 TGCATATGAAAAACCTCTTCGTCG 59.907 41.667 6.97 0.00 0.00 5.12
368 369 4.578601 CATATGAAAAACCTCTTCGTCGC 58.421 43.478 0.00 0.00 0.00 5.19
369 370 2.234300 TGAAAAACCTCTTCGTCGCT 57.766 45.000 0.00 0.00 0.00 4.93
370 371 2.132762 TGAAAAACCTCTTCGTCGCTC 58.867 47.619 0.00 0.00 0.00 5.03
371 372 1.459975 GAAAAACCTCTTCGTCGCTCC 59.540 52.381 0.00 0.00 0.00 4.70
372 373 0.320508 AAAACCTCTTCGTCGCTCCC 60.321 55.000 0.00 0.00 0.00 4.30
373 374 2.488087 AAACCTCTTCGTCGCTCCCG 62.488 60.000 0.00 0.00 0.00 5.14
374 375 4.856607 CCTCTTCGTCGCTCCCGC 62.857 72.222 0.00 0.00 0.00 6.13
385 386 2.535588 GCTCCCGCGTGTAAAAAGA 58.464 52.632 4.92 0.00 0.00 2.52
386 387 0.165295 GCTCCCGCGTGTAAAAAGAC 59.835 55.000 4.92 0.00 0.00 3.01
387 388 1.792006 CTCCCGCGTGTAAAAAGACT 58.208 50.000 4.92 0.00 0.00 3.24
388 389 2.927871 GCTCCCGCGTGTAAAAAGACTA 60.928 50.000 4.92 0.00 0.00 2.59
389 390 3.518590 CTCCCGCGTGTAAAAAGACTAT 58.481 45.455 4.92 0.00 0.00 2.12
390 391 3.929094 TCCCGCGTGTAAAAAGACTATT 58.071 40.909 4.92 0.00 0.00 1.73
391 392 4.317488 TCCCGCGTGTAAAAAGACTATTT 58.683 39.130 4.92 0.00 0.00 1.40
392 393 4.756135 TCCCGCGTGTAAAAAGACTATTTT 59.244 37.500 4.92 0.00 36.52 1.82
393 394 5.931146 TCCCGCGTGTAAAAAGACTATTTTA 59.069 36.000 4.92 0.00 34.51 1.52
394 395 6.091169 TCCCGCGTGTAAAAAGACTATTTTAG 59.909 38.462 4.92 0.00 35.91 1.85
395 396 5.731263 CCGCGTGTAAAAAGACTATTTTAGC 59.269 40.000 4.92 0.00 35.91 3.09
396 397 5.443763 CGCGTGTAAAAAGACTATTTTAGCG 59.556 40.000 0.00 13.61 38.91 4.26
397 398 5.731263 GCGTGTAAAAAGACTATTTTAGCGG 59.269 40.000 16.64 7.91 35.91 5.52
398 399 6.619232 GCGTGTAAAAAGACTATTTTAGCGGT 60.619 38.462 16.64 0.00 35.91 5.68
399 400 6.735063 CGTGTAAAAAGACTATTTTAGCGGTG 59.265 38.462 0.00 0.00 35.91 4.94
400 401 7.569957 CGTGTAAAAAGACTATTTTAGCGGTGT 60.570 37.037 0.00 0.00 35.91 4.16
401 402 8.711457 GTGTAAAAAGACTATTTTAGCGGTGTA 58.289 33.333 0.00 0.00 35.91 2.90
402 403 9.270640 TGTAAAAAGACTATTTTAGCGGTGTAA 57.729 29.630 0.00 0.00 35.91 2.41
405 406 9.673454 AAAAAGACTATTTTAGCGGTGTAAAAG 57.327 29.630 0.00 2.07 35.79 2.27
406 407 8.611654 AAAGACTATTTTAGCGGTGTAAAAGA 57.388 30.769 0.00 0.00 35.79 2.52
407 408 8.611654 AAGACTATTTTAGCGGTGTAAAAGAA 57.388 30.769 0.00 0.00 35.79 2.52
408 409 8.788325 AGACTATTTTAGCGGTGTAAAAGAAT 57.212 30.769 0.00 0.00 35.79 2.40
409 410 9.227777 AGACTATTTTAGCGGTGTAAAAGAATT 57.772 29.630 0.00 0.00 35.79 2.17
419 420 5.813717 GGTGTAAAAGAATTATACCGTGCC 58.186 41.667 0.00 0.00 0.00 5.01
420 421 5.495502 GTGTAAAAGAATTATACCGTGCCG 58.504 41.667 0.00 0.00 0.00 5.69
421 422 5.291614 GTGTAAAAGAATTATACCGTGCCGA 59.708 40.000 0.00 0.00 0.00 5.54
422 423 5.521010 TGTAAAAGAATTATACCGTGCCGAG 59.479 40.000 0.00 0.00 0.00 4.63
423 424 2.814280 AGAATTATACCGTGCCGAGG 57.186 50.000 0.00 0.00 0.00 4.63
424 425 1.145803 GAATTATACCGTGCCGAGGC 58.854 55.000 7.26 7.26 42.35 4.70
425 426 0.599204 AATTATACCGTGCCGAGGCG 60.599 55.000 9.78 0.00 45.51 5.52
426 427 1.457823 ATTATACCGTGCCGAGGCGA 61.458 55.000 9.78 0.00 45.51 5.54
427 428 1.665264 TTATACCGTGCCGAGGCGAA 61.665 55.000 9.78 0.00 45.51 4.70
428 429 2.067091 TATACCGTGCCGAGGCGAAG 62.067 60.000 9.78 2.77 45.51 3.79
441 442 3.329231 CGAAGCACGCCAGTTGAA 58.671 55.556 0.00 0.00 34.51 2.69
442 443 1.205064 CGAAGCACGCCAGTTGAAG 59.795 57.895 0.00 0.00 34.51 3.02
443 444 1.221466 CGAAGCACGCCAGTTGAAGA 61.221 55.000 0.00 0.00 34.51 2.87
444 445 1.160137 GAAGCACGCCAGTTGAAGAT 58.840 50.000 0.00 0.00 0.00 2.40
445 446 0.877071 AAGCACGCCAGTTGAAGATG 59.123 50.000 0.00 0.00 0.00 2.90
446 447 1.154150 GCACGCCAGTTGAAGATGC 60.154 57.895 0.00 0.00 0.00 3.91
447 448 1.580845 GCACGCCAGTTGAAGATGCT 61.581 55.000 0.00 0.00 0.00 3.79
448 449 0.877071 CACGCCAGTTGAAGATGCTT 59.123 50.000 0.00 0.00 0.00 3.91
449 450 1.267806 CACGCCAGTTGAAGATGCTTT 59.732 47.619 0.00 0.00 0.00 3.51
450 451 1.956477 ACGCCAGTTGAAGATGCTTTT 59.044 42.857 0.00 0.00 0.00 2.27
451 452 2.362077 ACGCCAGTTGAAGATGCTTTTT 59.638 40.909 0.00 0.00 0.00 1.94
479 480 8.807667 AAACTTGTTGAAGATGCTTTTAGATG 57.192 30.769 0.00 0.00 32.98 2.90
480 481 6.385033 ACTTGTTGAAGATGCTTTTAGATGC 58.615 36.000 0.00 0.00 32.98 3.91
481 482 5.963176 TGTTGAAGATGCTTTTAGATGCA 57.037 34.783 0.00 0.00 43.67 3.96
482 483 5.702865 TGTTGAAGATGCTTTTAGATGCAC 58.297 37.500 0.00 0.00 42.26 4.57
483 484 5.241285 TGTTGAAGATGCTTTTAGATGCACA 59.759 36.000 0.00 0.00 42.26 4.57
484 485 6.071784 TGTTGAAGATGCTTTTAGATGCACAT 60.072 34.615 0.00 0.00 42.26 3.21
485 486 5.886992 TGAAGATGCTTTTAGATGCACATG 58.113 37.500 0.00 0.00 42.26 3.21
486 487 4.913335 AGATGCTTTTAGATGCACATGG 57.087 40.909 0.00 0.00 42.26 3.66
487 488 2.945447 TGCTTTTAGATGCACATGGC 57.055 45.000 0.00 0.00 45.13 4.40
496 497 3.142838 GCACATGGCGCATTCCCT 61.143 61.111 10.83 0.00 0.00 4.20
497 498 3.113745 CACATGGCGCATTCCCTC 58.886 61.111 10.83 0.00 0.00 4.30
498 499 1.750018 CACATGGCGCATTCCCTCA 60.750 57.895 10.83 0.00 0.00 3.86
499 500 1.001020 ACATGGCGCATTCCCTCAA 60.001 52.632 10.83 0.00 0.00 3.02
500 501 0.611618 ACATGGCGCATTCCCTCAAA 60.612 50.000 10.83 0.00 0.00 2.69
501 502 0.179129 CATGGCGCATTCCCTCAAAC 60.179 55.000 10.83 0.00 0.00 2.93
502 503 1.656818 ATGGCGCATTCCCTCAAACG 61.657 55.000 10.83 0.00 0.00 3.60
503 504 2.038269 GGCGCATTCCCTCAAACGA 61.038 57.895 10.83 0.00 0.00 3.85
504 505 1.376609 GGCGCATTCCCTCAAACGAT 61.377 55.000 10.83 0.00 0.00 3.73
505 506 0.028110 GCGCATTCCCTCAAACGATC 59.972 55.000 0.30 0.00 0.00 3.69
506 507 1.368641 CGCATTCCCTCAAACGATCA 58.631 50.000 0.00 0.00 0.00 2.92
507 508 1.942657 CGCATTCCCTCAAACGATCAT 59.057 47.619 0.00 0.00 0.00 2.45
508 509 2.032549 CGCATTCCCTCAAACGATCATC 60.033 50.000 0.00 0.00 0.00 2.92
509 510 2.032549 GCATTCCCTCAAACGATCATCG 60.033 50.000 5.22 5.22 46.93 3.84
510 511 1.651987 TTCCCTCAAACGATCATCGC 58.348 50.000 7.05 0.00 45.12 4.58
511 512 0.824109 TCCCTCAAACGATCATCGCT 59.176 50.000 7.05 0.00 45.12 4.93
512 513 1.207089 TCCCTCAAACGATCATCGCTT 59.793 47.619 7.05 0.00 45.12 4.68
513 514 2.429250 TCCCTCAAACGATCATCGCTTA 59.571 45.455 7.05 0.00 45.12 3.09
514 515 3.118920 TCCCTCAAACGATCATCGCTTAA 60.119 43.478 7.05 0.00 45.12 1.85
515 516 3.621268 CCCTCAAACGATCATCGCTTAAA 59.379 43.478 7.05 0.00 45.12 1.52
516 517 4.494199 CCCTCAAACGATCATCGCTTAAAC 60.494 45.833 7.05 0.00 45.12 2.01
517 518 4.239505 TCAAACGATCATCGCTTAAACG 57.760 40.909 7.05 0.00 45.12 3.60
518 519 3.921630 TCAAACGATCATCGCTTAAACGA 59.078 39.130 7.05 3.07 45.12 3.85
519 520 4.031314 TCAAACGATCATCGCTTAAACGAG 59.969 41.667 7.05 0.17 46.69 4.18
520 521 1.852895 ACGATCATCGCTTAAACGAGC 59.147 47.619 7.05 0.00 46.69 5.03
521 522 2.120232 CGATCATCGCTTAAACGAGCT 58.880 47.619 7.11 0.00 46.69 4.09
522 523 2.535984 CGATCATCGCTTAAACGAGCTT 59.464 45.455 7.11 0.00 46.69 3.74
523 524 3.361147 CGATCATCGCTTAAACGAGCTTC 60.361 47.826 7.11 2.88 46.69 3.86
524 525 2.268298 TCATCGCTTAAACGAGCTTCC 58.732 47.619 7.11 0.00 46.69 3.46
525 526 2.094182 TCATCGCTTAAACGAGCTTCCT 60.094 45.455 7.11 0.00 46.69 3.36
526 527 2.450609 TCGCTTAAACGAGCTTCCTT 57.549 45.000 0.00 0.00 40.52 3.36
527 528 2.334838 TCGCTTAAACGAGCTTCCTTC 58.665 47.619 0.00 0.00 40.52 3.46
528 529 1.059264 CGCTTAAACGAGCTTCCTTCG 59.941 52.381 0.00 0.00 40.52 3.79
533 534 3.073446 CGAGCTTCCTTCGTTCGC 58.927 61.111 0.00 0.00 33.57 4.70
534 535 1.444553 CGAGCTTCCTTCGTTCGCT 60.445 57.895 0.00 0.00 33.57 4.93
535 536 1.406970 CGAGCTTCCTTCGTTCGCTC 61.407 60.000 0.00 0.00 42.63 5.03
536 537 1.406970 GAGCTTCCTTCGTTCGCTCG 61.407 60.000 0.00 0.00 37.89 5.03
537 538 2.445438 GCTTCCTTCGTTCGCTCGG 61.445 63.158 0.00 0.00 0.00 4.63
538 539 1.211969 CTTCCTTCGTTCGCTCGGA 59.788 57.895 0.00 0.00 0.00 4.55
539 540 0.179134 CTTCCTTCGTTCGCTCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
540 541 0.457853 TTCCTTCGTTCGCTCGGATG 60.458 55.000 0.00 0.00 0.00 3.51
541 542 1.878522 CCTTCGTTCGCTCGGATGG 60.879 63.158 0.00 0.00 0.00 3.51
542 543 2.508439 TTCGTTCGCTCGGATGGC 60.508 61.111 0.00 0.00 0.00 4.40
543 544 4.508128 TCGTTCGCTCGGATGGCC 62.508 66.667 0.00 0.00 0.00 5.36
544 545 4.514577 CGTTCGCTCGGATGGCCT 62.515 66.667 3.32 0.00 0.00 5.19
545 546 2.586357 GTTCGCTCGGATGGCCTC 60.586 66.667 3.32 0.00 0.00 4.70
546 547 3.074369 TTCGCTCGGATGGCCTCA 61.074 61.111 3.32 0.00 0.00 3.86
547 548 3.371097 TTCGCTCGGATGGCCTCAC 62.371 63.158 3.32 0.00 0.00 3.51
548 549 4.899239 CGCTCGGATGGCCTCACC 62.899 72.222 3.32 3.67 39.84 4.02
561 562 3.419793 CTCACCAAGGAAGGTTGCA 57.580 52.632 0.00 0.00 40.77 4.08
562 563 1.915141 CTCACCAAGGAAGGTTGCAT 58.085 50.000 0.00 0.00 40.77 3.96
563 564 1.815003 CTCACCAAGGAAGGTTGCATC 59.185 52.381 0.00 0.00 40.77 3.91
564 565 0.523072 CACCAAGGAAGGTTGCATCG 59.477 55.000 0.00 0.00 40.77 3.84
565 566 0.110486 ACCAAGGAAGGTTGCATCGT 59.890 50.000 0.00 0.00 39.34 3.73
566 567 0.523072 CCAAGGAAGGTTGCATCGTG 59.477 55.000 0.00 0.00 0.00 4.35
567 568 1.522668 CAAGGAAGGTTGCATCGTGA 58.477 50.000 0.00 0.00 0.00 4.35
568 569 2.086869 CAAGGAAGGTTGCATCGTGAT 58.913 47.619 0.00 0.00 0.00 3.06
569 570 2.489329 CAAGGAAGGTTGCATCGTGATT 59.511 45.455 0.00 0.00 0.00 2.57
570 571 2.086869 AGGAAGGTTGCATCGTGATTG 58.913 47.619 0.00 0.00 0.00 2.67
571 572 1.133025 GGAAGGTTGCATCGTGATTGG 59.867 52.381 0.00 0.00 0.00 3.16
572 573 0.527565 AAGGTTGCATCGTGATTGGC 59.472 50.000 0.00 0.00 0.00 4.52
573 574 1.226379 GGTTGCATCGTGATTGGCG 60.226 57.895 0.00 0.00 0.00 5.69
574 575 1.226379 GTTGCATCGTGATTGGCGG 60.226 57.895 0.00 0.00 0.00 6.13
575 576 2.405805 TTGCATCGTGATTGGCGGG 61.406 57.895 0.00 0.00 0.00 6.13
576 577 4.256090 GCATCGTGATTGGCGGGC 62.256 66.667 0.00 0.00 0.00 6.13
577 578 2.823593 CATCGTGATTGGCGGGCA 60.824 61.111 0.00 0.00 0.00 5.36
578 579 2.045438 ATCGTGATTGGCGGGCAA 60.045 55.556 19.70 19.70 0.00 4.52
579 580 1.677300 ATCGTGATTGGCGGGCAAA 60.677 52.632 21.22 4.52 0.00 3.68
580 581 1.247419 ATCGTGATTGGCGGGCAAAA 61.247 50.000 21.22 9.81 0.00 2.44
581 582 1.006805 CGTGATTGGCGGGCAAAAA 60.007 52.632 21.22 9.45 0.00 1.94
582 583 1.008361 CGTGATTGGCGGGCAAAAAG 61.008 55.000 21.22 10.81 0.00 2.27
583 584 0.316841 GTGATTGGCGGGCAAAAAGA 59.683 50.000 21.22 0.00 0.00 2.52
584 585 1.043816 TGATTGGCGGGCAAAAAGAA 58.956 45.000 21.22 0.00 0.00 2.52
585 586 1.414181 TGATTGGCGGGCAAAAAGAAA 59.586 42.857 21.22 0.00 0.00 2.52
586 587 2.068519 GATTGGCGGGCAAAAAGAAAG 58.931 47.619 21.22 0.00 0.00 2.62
587 588 1.115467 TTGGCGGGCAAAAAGAAAGA 58.885 45.000 15.15 0.00 0.00 2.52
588 589 0.673437 TGGCGGGCAAAAAGAAAGAG 59.327 50.000 0.01 0.00 0.00 2.85
589 590 0.673985 GGCGGGCAAAAAGAAAGAGT 59.326 50.000 0.00 0.00 0.00 3.24
590 591 1.602920 GGCGGGCAAAAAGAAAGAGTG 60.603 52.381 0.00 0.00 0.00 3.51
591 592 1.770957 CGGGCAAAAAGAAAGAGTGC 58.229 50.000 0.00 0.00 34.42 4.40
593 594 1.770957 GGCAAAAAGAAAGAGTGCCG 58.229 50.000 0.00 0.00 44.82 5.69
594 595 1.336755 GGCAAAAAGAAAGAGTGCCGA 59.663 47.619 0.00 0.00 44.82 5.54
595 596 2.385315 GCAAAAAGAAAGAGTGCCGAC 58.615 47.619 0.00 0.00 0.00 4.79
610 611 1.354337 CCGACCTCAACACGCATCTG 61.354 60.000 0.00 0.00 0.00 2.90
614 615 0.742281 CCTCAACACGCATCTGGAGG 60.742 60.000 0.00 0.00 36.33 4.30
621 622 1.890979 CGCATCTGGAGGGCATCAC 60.891 63.158 0.08 0.00 0.00 3.06
622 623 1.527844 GCATCTGGAGGGCATCACC 60.528 63.158 0.08 0.00 37.93 4.02
629 630 1.105759 GGAGGGCATCACCAATCAGC 61.106 60.000 0.08 0.00 42.05 4.26
639 640 2.324330 CCAATCAGCACGCACCGAA 61.324 57.895 0.00 0.00 0.00 4.30
640 641 1.573932 CAATCAGCACGCACCGAAA 59.426 52.632 0.00 0.00 0.00 3.46
641 642 0.725784 CAATCAGCACGCACCGAAAC 60.726 55.000 0.00 0.00 0.00 2.78
642 643 1.852067 AATCAGCACGCACCGAAACC 61.852 55.000 0.00 0.00 0.00 3.27
643 644 3.276091 CAGCACGCACCGAAACCA 61.276 61.111 0.00 0.00 0.00 3.67
644 645 2.515057 AGCACGCACCGAAACCAA 60.515 55.556 0.00 0.00 0.00 3.67
645 646 2.115911 AGCACGCACCGAAACCAAA 61.116 52.632 0.00 0.00 0.00 3.28
655 656 4.739436 GCACCGAAACCAAAGGAAAAGAAT 60.739 41.667 0.00 0.00 0.00 2.40
657 658 4.647399 ACCGAAACCAAAGGAAAAGAATCA 59.353 37.500 0.00 0.00 0.00 2.57
659 660 6.183360 ACCGAAACCAAAGGAAAAGAATCAAT 60.183 34.615 0.00 0.00 0.00 2.57
668 669 4.773674 AGGAAAAGAATCAATCACCATGCA 59.226 37.500 0.00 0.00 0.00 3.96
860 862 0.824109 CGCCTACTTCTCACATCCCA 59.176 55.000 0.00 0.00 0.00 4.37
947 976 1.336755 GACGGCAAACCACATCAAACT 59.663 47.619 0.00 0.00 34.57 2.66
970 1005 7.461749 ACTGGAAACCTTCTCTCATCATTTTA 58.538 34.615 0.00 0.00 0.00 1.52
995 1030 0.933047 TCGCGTCGTTGACTCTTGTG 60.933 55.000 5.77 0.00 0.00 3.33
1324 1423 2.820059 TTCTGGGGATCGATCGATTG 57.180 50.000 29.89 17.41 34.60 2.67
1332 1431 2.705934 ATCGATCGATTGCAGCCGCT 62.706 55.000 24.60 0.00 39.64 5.52
1494 1653 3.561310 CCGATTGCTGCTCTGCTTAATTA 59.439 43.478 0.00 0.00 0.00 1.40
1496 1655 4.272018 CGATTGCTGCTCTGCTTAATTACT 59.728 41.667 0.00 0.00 0.00 2.24
1556 1741 4.222847 GTGATCGACGGGGAGCCC 62.223 72.222 0.00 0.00 41.09 5.19
1654 1848 7.805071 CGCCATCAAGAGGTAATTGATTTATTC 59.195 37.037 0.00 0.00 43.20 1.75
1699 1902 1.479730 CTGCAGAGCTAGTGGTCATGA 59.520 52.381 8.42 0.00 42.66 3.07
1805 2041 2.877097 TGATAGTCAAGCAGCCCAAA 57.123 45.000 0.00 0.00 0.00 3.28
1846 2084 2.507484 CATTTCCAGCTCCAGTGTTGA 58.493 47.619 0.00 0.00 0.00 3.18
1907 2147 9.710818 TCCCTGTCTAATTACTGTACTCTATTT 57.289 33.333 0.00 0.00 0.00 1.40
1928 2172 3.081061 TGTTGGATCCTCCGAATGTTTG 58.919 45.455 14.23 0.00 40.17 2.93
1969 2213 1.888512 TGCTTTGGGTTCATCTTCTGC 59.111 47.619 0.00 0.00 0.00 4.26
1986 2230 2.680913 GCTGTCATCGCCGTTTGCT 61.681 57.895 0.00 0.00 38.05 3.91
1987 2231 1.133253 CTGTCATCGCCGTTTGCTG 59.867 57.895 0.00 0.00 38.05 4.41
1988 2232 1.291184 CTGTCATCGCCGTTTGCTGA 61.291 55.000 0.00 0.00 38.05 4.26
1989 2233 0.882484 TGTCATCGCCGTTTGCTGAA 60.882 50.000 0.00 0.00 38.05 3.02
1990 2234 0.452784 GTCATCGCCGTTTGCTGAAC 60.453 55.000 0.00 0.00 38.05 3.18
1991 2235 0.602638 TCATCGCCGTTTGCTGAACT 60.603 50.000 2.83 0.00 38.05 3.01
1992 2236 0.238289 CATCGCCGTTTGCTGAACTT 59.762 50.000 2.83 0.00 38.05 2.66
1993 2237 0.238289 ATCGCCGTTTGCTGAACTTG 59.762 50.000 2.83 0.00 38.05 3.16
1994 2238 0.812014 TCGCCGTTTGCTGAACTTGA 60.812 50.000 2.83 0.00 38.05 3.02
1996 2240 1.334960 CGCCGTTTGCTGAACTTGATT 60.335 47.619 2.83 0.00 38.05 2.57
1997 2241 2.095969 CGCCGTTTGCTGAACTTGATTA 60.096 45.455 2.83 0.00 38.05 1.75
1999 2243 3.304391 GCCGTTTGCTGAACTTGATTACA 60.304 43.478 2.83 0.00 36.06 2.41
2000 2244 4.791411 GCCGTTTGCTGAACTTGATTACAA 60.791 41.667 2.83 0.00 36.06 2.41
2001 2245 4.675114 CCGTTTGCTGAACTTGATTACAAC 59.325 41.667 2.83 0.00 36.06 3.32
2002 2246 5.270083 CGTTTGCTGAACTTGATTACAACA 58.730 37.500 2.83 0.00 36.06 3.33
2003 2247 5.741510 CGTTTGCTGAACTTGATTACAACAA 59.258 36.000 2.83 0.00 36.06 2.83
2004 2248 6.417635 CGTTTGCTGAACTTGATTACAACAAT 59.582 34.615 0.00 0.00 36.06 2.71
2006 2250 9.243637 GTTTGCTGAACTTGATTACAACAATTA 57.756 29.630 0.00 0.00 35.31 1.40
2007 2251 9.462174 TTTGCTGAACTTGATTACAACAATTAG 57.538 29.630 0.00 0.00 32.27 1.73
2008 2252 7.592938 TGCTGAACTTGATTACAACAATTAGG 58.407 34.615 0.00 0.00 32.27 2.69
2009 2253 6.528072 GCTGAACTTGATTACAACAATTAGGC 59.472 38.462 0.00 0.00 32.27 3.93
2031 2589 7.175104 AGGCTAAATGTTGGAAGAACATCTTA 58.825 34.615 0.00 0.00 39.73 2.10
2050 2608 0.179084 ACTGACGGGCATATCCAACG 60.179 55.000 0.00 0.00 36.21 4.10
2098 2656 4.592942 ACAGCAATACATCATGTCCTTGT 58.407 39.130 12.34 2.55 30.44 3.16
2109 2667 4.973168 TCATGTCCTTGTATATTGGGAGC 58.027 43.478 0.00 0.00 0.00 4.70
2138 2697 4.771590 TTTGTCATCACTGATTCTTGCC 57.228 40.909 0.00 0.00 32.98 4.52
2162 2721 6.415867 CCAGTATGAAATCAAATCGCATCAAC 59.584 38.462 0.00 0.00 39.69 3.18
2188 2747 3.096092 ACACGGGTGGCATGATATTTTT 58.904 40.909 0.00 0.00 34.19 1.94
2244 2803 6.327365 AGAAAATCACCCCAAAAGTTCTGATT 59.673 34.615 0.00 0.00 31.23 2.57
2275 2843 9.777297 ATTATTTATTTATTTGTCCCCATGCAC 57.223 29.630 0.00 0.00 0.00 4.57
2294 2862 1.893808 ACAGTTCTTGCACCAGCCG 60.894 57.895 0.00 0.00 41.13 5.52
2295 2863 1.597854 CAGTTCTTGCACCAGCCGA 60.598 57.895 0.00 0.00 41.13 5.54
2296 2864 1.598130 AGTTCTTGCACCAGCCGAC 60.598 57.895 0.00 0.00 41.13 4.79
2297 2865 2.281484 TTCTTGCACCAGCCGACC 60.281 61.111 0.00 0.00 41.13 4.79
2299 2867 3.052082 CTTGCACCAGCCGACCAG 61.052 66.667 0.00 0.00 41.13 4.00
2353 2921 7.589395 CATATTGATCTAGCTACTGTCGTTCT 58.411 38.462 0.00 0.00 0.00 3.01
2385 2953 2.223618 CGGAGCAAAGTAGAGTAGCCTC 60.224 54.545 0.00 0.00 38.04 4.70
2392 2960 4.668151 AGAGTAGCCTCTGGTCGG 57.332 61.111 0.00 0.00 46.45 4.79
2521 3089 3.244422 TGTCACAAACAGTAGATCCCACC 60.244 47.826 0.00 0.00 32.81 4.61
2669 3237 1.337071 GAGGCGATGTTGTAGATCCGA 59.663 52.381 0.00 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.590850 AGCAGGAAAATTTTGTCAGGAC 57.409 40.909 8.47 0.00 0.00 3.85
4 5 6.009589 TGATAGCAGGAAAATTTTGTCAGGA 58.990 36.000 8.47 0.00 0.00 3.86
5 6 6.271488 TGATAGCAGGAAAATTTTGTCAGG 57.729 37.500 8.47 0.00 0.00 3.86
6 7 7.487189 GTCATGATAGCAGGAAAATTTTGTCAG 59.513 37.037 8.47 0.00 36.47 3.51
7 8 7.039853 TGTCATGATAGCAGGAAAATTTTGTCA 60.040 33.333 8.47 0.00 36.47 3.58
8 9 7.315142 TGTCATGATAGCAGGAAAATTTTGTC 58.685 34.615 8.47 0.53 36.47 3.18
10 11 8.712285 AATGTCATGATAGCAGGAAAATTTTG 57.288 30.769 8.47 0.00 36.47 2.44
11 12 9.729281 AAAATGTCATGATAGCAGGAAAATTTT 57.271 25.926 17.57 17.57 37.88 1.82
12 13 9.729281 AAAAATGTCATGATAGCAGGAAAATTT 57.271 25.926 10.18 10.18 36.47 1.82
41 42 9.669353 GCCATTATAGAAATACTTGTCATGTTG 57.331 33.333 0.00 0.00 0.00 3.33
42 43 9.407380 TGCCATTATAGAAATACTTGTCATGTT 57.593 29.630 0.00 0.00 0.00 2.71
43 44 8.978874 TGCCATTATAGAAATACTTGTCATGT 57.021 30.769 0.00 0.00 0.00 3.21
44 45 9.836076 CATGCCATTATAGAAATACTTGTCATG 57.164 33.333 0.00 0.00 0.00 3.07
45 46 8.517878 GCATGCCATTATAGAAATACTTGTCAT 58.482 33.333 6.36 0.00 0.00 3.06
46 47 7.040478 GGCATGCCATTATAGAAATACTTGTCA 60.040 37.037 32.08 0.00 35.81 3.58
47 48 7.040478 TGGCATGCCATTATAGAAATACTTGTC 60.040 37.037 35.59 2.23 41.89 3.18
48 49 6.777091 TGGCATGCCATTATAGAAATACTTGT 59.223 34.615 35.59 0.00 41.89 3.16
49 50 7.218228 TGGCATGCCATTATAGAAATACTTG 57.782 36.000 35.59 0.00 41.89 3.16
50 51 7.838079 TTGGCATGCCATTATAGAAATACTT 57.162 32.000 38.78 0.00 46.64 2.24
51 52 7.838079 TTTGGCATGCCATTATAGAAATACT 57.162 32.000 38.78 0.00 46.64 2.12
80 81 8.450964 CGTTCGGGAATTTCATGCTATAATAAT 58.549 33.333 0.00 0.00 0.00 1.28
81 82 7.442969 ACGTTCGGGAATTTCATGCTATAATAA 59.557 33.333 0.00 0.00 0.00 1.40
82 83 6.932400 ACGTTCGGGAATTTCATGCTATAATA 59.068 34.615 0.00 0.00 0.00 0.98
83 84 5.763204 ACGTTCGGGAATTTCATGCTATAAT 59.237 36.000 0.00 0.00 0.00 1.28
84 85 5.120399 ACGTTCGGGAATTTCATGCTATAA 58.880 37.500 0.00 0.00 0.00 0.98
85 86 4.699637 ACGTTCGGGAATTTCATGCTATA 58.300 39.130 0.00 0.00 0.00 1.31
86 87 3.541632 ACGTTCGGGAATTTCATGCTAT 58.458 40.909 0.00 0.00 0.00 2.97
87 88 2.980568 ACGTTCGGGAATTTCATGCTA 58.019 42.857 0.00 0.00 0.00 3.49
88 89 1.821216 ACGTTCGGGAATTTCATGCT 58.179 45.000 0.00 0.00 0.00 3.79
89 90 2.629639 AACGTTCGGGAATTTCATGC 57.370 45.000 0.00 0.00 0.00 4.06
90 91 4.494199 GCTCTAACGTTCGGGAATTTCATG 60.494 45.833 2.82 0.00 0.00 3.07
91 92 3.621715 GCTCTAACGTTCGGGAATTTCAT 59.378 43.478 2.82 0.00 0.00 2.57
92 93 2.997986 GCTCTAACGTTCGGGAATTTCA 59.002 45.455 2.82 0.00 0.00 2.69
93 94 2.028883 CGCTCTAACGTTCGGGAATTTC 59.971 50.000 2.82 0.00 0.00 2.17
94 95 1.997606 CGCTCTAACGTTCGGGAATTT 59.002 47.619 2.82 0.00 0.00 1.82
95 96 1.067354 ACGCTCTAACGTTCGGGAATT 60.067 47.619 2.82 0.00 45.75 2.17
96 97 0.529378 ACGCTCTAACGTTCGGGAAT 59.471 50.000 2.82 0.00 45.75 3.01
97 98 1.959085 ACGCTCTAACGTTCGGGAA 59.041 52.632 2.82 0.00 45.75 3.97
98 99 3.672293 ACGCTCTAACGTTCGGGA 58.328 55.556 2.82 1.03 45.75 5.14
114 115 0.388134 TTAGCGCGTCTGTTGGAGAC 60.388 55.000 8.43 0.00 46.91 3.36
115 116 0.315886 TTTAGCGCGTCTGTTGGAGA 59.684 50.000 8.43 0.00 0.00 3.71
116 117 1.359848 ATTTAGCGCGTCTGTTGGAG 58.640 50.000 8.43 0.00 0.00 3.86
117 118 2.658373 TATTTAGCGCGTCTGTTGGA 57.342 45.000 8.43 0.00 0.00 3.53
118 119 2.536928 GCTTATTTAGCGCGTCTGTTGG 60.537 50.000 8.43 0.00 40.71 3.77
119 120 2.694043 GCTTATTTAGCGCGTCTGTTG 58.306 47.619 8.43 0.00 40.71 3.33
139 140 1.207593 CCGTTTTTCCAGCGAGCAG 59.792 57.895 0.00 0.00 0.00 4.24
140 141 2.903547 GCCGTTTTTCCAGCGAGCA 61.904 57.895 0.00 0.00 0.00 4.26
141 142 1.296056 TAGCCGTTTTTCCAGCGAGC 61.296 55.000 0.00 0.00 0.00 5.03
142 143 1.062587 CATAGCCGTTTTTCCAGCGAG 59.937 52.381 0.00 0.00 0.00 5.03
143 144 1.083489 CATAGCCGTTTTTCCAGCGA 58.917 50.000 0.00 0.00 0.00 4.93
144 145 0.802494 ACATAGCCGTTTTTCCAGCG 59.198 50.000 0.00 0.00 0.00 5.18
145 146 2.223272 GCTACATAGCCGTTTTTCCAGC 60.223 50.000 0.00 0.00 43.39 4.85
146 147 2.030457 CGCTACATAGCCGTTTTTCCAG 59.970 50.000 5.33 0.00 46.34 3.86
147 148 2.004017 CGCTACATAGCCGTTTTTCCA 58.996 47.619 5.33 0.00 46.34 3.53
148 149 1.267882 GCGCTACATAGCCGTTTTTCC 60.268 52.381 0.00 0.00 46.34 3.13
149 150 1.591394 CGCGCTACATAGCCGTTTTTC 60.591 52.381 5.56 0.00 46.34 2.29
150 151 0.372334 CGCGCTACATAGCCGTTTTT 59.628 50.000 5.56 0.00 46.34 1.94
151 152 2.003672 CGCGCTACATAGCCGTTTT 58.996 52.632 5.56 0.00 46.34 2.43
152 153 2.522638 GCGCGCTACATAGCCGTTT 61.523 57.895 26.67 0.00 46.34 3.60
153 154 2.960129 GCGCGCTACATAGCCGTT 60.960 61.111 26.67 0.00 46.34 4.44
158 159 3.743167 GTCGCGCGCGCTACATAG 61.743 66.667 42.32 30.73 36.89 2.23
167 168 3.898640 CTACTTTCGGTCGCGCGC 61.899 66.667 27.95 23.91 0.00 6.86
168 169 3.898640 GCTACTTTCGGTCGCGCG 61.899 66.667 26.76 26.76 0.00 6.86
171 172 2.506345 GAGCGCTACTTTCGGTCGC 61.506 63.158 11.50 0.00 43.03 5.19
172 173 3.676742 GAGCGCTACTTTCGGTCG 58.323 61.111 11.50 0.00 43.03 4.79
174 175 1.215647 CTGGAGCGCTACTTTCGGT 59.784 57.895 22.67 0.00 40.58 4.69
175 176 2.167861 GCTGGAGCGCTACTTTCGG 61.168 63.158 22.67 9.59 0.00 4.30
176 177 1.416813 CTGCTGGAGCGCTACTTTCG 61.417 60.000 22.67 7.78 45.83 3.46
177 178 0.390472 ACTGCTGGAGCGCTACTTTC 60.390 55.000 22.67 10.17 45.83 2.62
178 179 0.390472 GACTGCTGGAGCGCTACTTT 60.390 55.000 22.67 0.00 45.83 2.66
179 180 1.216710 GACTGCTGGAGCGCTACTT 59.783 57.895 22.67 0.00 45.83 2.24
180 181 2.888863 GACTGCTGGAGCGCTACT 59.111 61.111 22.67 0.00 45.83 2.57
181 182 2.580867 CGACTGCTGGAGCGCTAC 60.581 66.667 14.39 14.39 45.83 3.58
182 183 4.498520 GCGACTGCTGGAGCGCTA 62.499 66.667 22.65 0.00 45.83 4.26
186 187 2.613739 TATGACGCGACTGCTGGAGC 62.614 60.000 15.93 0.00 39.65 4.70
187 188 0.179137 TTATGACGCGACTGCTGGAG 60.179 55.000 15.93 0.00 39.65 3.86
188 189 0.459899 ATTATGACGCGACTGCTGGA 59.540 50.000 15.93 0.00 39.65 3.86
189 190 0.855349 GATTATGACGCGACTGCTGG 59.145 55.000 15.93 0.00 39.65 4.85
190 191 0.855349 GGATTATGACGCGACTGCTG 59.145 55.000 15.93 0.00 39.65 4.41
191 192 0.249489 GGGATTATGACGCGACTGCT 60.249 55.000 15.93 0.00 39.65 4.24
192 193 1.548973 CGGGATTATGACGCGACTGC 61.549 60.000 15.93 0.00 44.21 4.40
193 194 0.248907 ACGGGATTATGACGCGACTG 60.249 55.000 15.93 0.00 44.21 3.51
194 195 0.248907 CACGGGATTATGACGCGACT 60.249 55.000 15.93 0.00 44.21 4.18
195 196 1.818221 GCACGGGATTATGACGCGAC 61.818 60.000 15.93 7.62 44.21 5.19
196 197 1.590525 GCACGGGATTATGACGCGA 60.591 57.895 15.93 0.00 44.21 5.87
197 198 2.927618 CGCACGGGATTATGACGCG 61.928 63.158 3.53 3.53 46.19 6.01
198 199 2.928361 CGCACGGGATTATGACGC 59.072 61.111 0.00 0.00 0.00 5.19
199 200 2.927618 CGCGCACGGGATTATGACG 61.928 63.158 8.75 0.00 34.97 4.35
200 201 2.928361 CGCGCACGGGATTATGAC 59.072 61.111 8.75 0.00 34.97 3.06
210 211 2.108344 AACCTTGTTTACCGCGCACG 62.108 55.000 8.75 0.00 39.67 5.34
211 212 0.385098 GAACCTTGTTTACCGCGCAC 60.385 55.000 8.75 0.00 0.00 5.34
212 213 0.814410 TGAACCTTGTTTACCGCGCA 60.814 50.000 8.75 0.00 0.00 6.09
213 214 0.110373 CTGAACCTTGTTTACCGCGC 60.110 55.000 0.00 0.00 0.00 6.86
214 215 0.110373 GCTGAACCTTGTTTACCGCG 60.110 55.000 0.00 0.00 0.00 6.46
215 216 0.110373 CGCTGAACCTTGTTTACCGC 60.110 55.000 0.00 0.00 0.00 5.68
216 217 0.110373 GCGCTGAACCTTGTTTACCG 60.110 55.000 0.00 0.00 0.00 4.02
217 218 0.110373 CGCGCTGAACCTTGTTTACC 60.110 55.000 5.56 0.00 0.00 2.85
218 219 0.724785 GCGCGCTGAACCTTGTTTAC 60.725 55.000 26.67 0.00 0.00 2.01
219 220 0.882927 AGCGCGCTGAACCTTGTTTA 60.883 50.000 36.13 0.00 0.00 2.01
220 221 2.186826 AGCGCGCTGAACCTTGTTT 61.187 52.632 36.13 3.44 0.00 2.83
221 222 2.591715 AGCGCGCTGAACCTTGTT 60.592 55.556 36.13 4.10 0.00 2.83
234 235 1.668253 GATGCAGTTTTTCGCAGCGC 61.668 55.000 10.87 0.00 42.37 5.92
235 236 2.342956 GATGCAGTTTTTCGCAGCG 58.657 52.632 9.06 9.06 42.37 5.18
236 237 2.342956 CGATGCAGTTTTTCGCAGC 58.657 52.632 0.00 0.00 42.37 5.25
240 241 2.479782 CGCGCGATGCAGTTTTTCG 61.480 57.895 28.94 2.33 46.97 3.46
241 242 2.767919 GCGCGCGATGCAGTTTTTC 61.768 57.895 37.18 6.98 46.97 2.29
242 243 2.800746 GCGCGCGATGCAGTTTTT 60.801 55.556 37.18 0.00 46.97 1.94
243 244 3.726517 AGCGCGCGATGCAGTTTT 61.727 55.556 37.18 0.00 46.97 2.43
244 245 4.450122 CAGCGCGCGATGCAGTTT 62.450 61.111 35.81 0.57 46.97 2.66
250 251 2.534019 AAATACCCAGCGCGCGATG 61.534 57.895 38.45 38.45 0.00 3.84
251 252 2.203015 AAATACCCAGCGCGCGAT 60.203 55.556 37.18 28.60 0.00 4.58
252 253 3.192230 CAAATACCCAGCGCGCGA 61.192 61.111 37.18 12.44 0.00 5.87
253 254 4.236416 CCAAATACCCAGCGCGCG 62.236 66.667 28.44 28.44 0.00 6.86
254 255 3.131478 ACCAAATACCCAGCGCGC 61.131 61.111 26.66 26.66 0.00 6.86
255 256 2.791256 CACCAAATACCCAGCGCG 59.209 61.111 0.00 0.00 0.00 6.86
256 257 2.489751 GCACCAAATACCCAGCGC 59.510 61.111 0.00 0.00 0.00 5.92
257 258 3.196648 GGCACCAAATACCCAGCG 58.803 61.111 0.00 0.00 0.00 5.18
270 271 4.030452 GCACACGAGCAAGGGCAC 62.030 66.667 0.00 0.00 44.61 5.01
274 275 4.081030 CAGCGCACACGAGCAAGG 62.081 66.667 11.47 0.00 43.93 3.61
275 276 1.556591 TTACAGCGCACACGAGCAAG 61.557 55.000 11.47 0.00 43.93 4.01
276 277 1.154814 TTTACAGCGCACACGAGCAA 61.155 50.000 11.47 0.00 43.93 3.91
277 278 1.154814 TTTTACAGCGCACACGAGCA 61.155 50.000 11.47 0.00 43.93 4.26
278 279 0.165944 ATTTTACAGCGCACACGAGC 59.834 50.000 11.47 0.00 43.93 5.03
279 280 1.726791 AGATTTTACAGCGCACACGAG 59.273 47.619 11.47 0.00 43.93 4.18
280 281 1.459209 CAGATTTTACAGCGCACACGA 59.541 47.619 11.47 0.00 43.93 4.35
281 282 1.464023 CCAGATTTTACAGCGCACACG 60.464 52.381 11.47 0.00 44.07 4.49
282 283 1.135689 CCCAGATTTTACAGCGCACAC 60.136 52.381 11.47 0.00 0.00 3.82
283 284 1.164411 CCCAGATTTTACAGCGCACA 58.836 50.000 11.47 0.00 0.00 4.57
284 285 0.179163 GCCCAGATTTTACAGCGCAC 60.179 55.000 11.47 0.00 0.00 5.34
285 286 0.322456 AGCCCAGATTTTACAGCGCA 60.322 50.000 11.47 0.00 0.00 6.09
286 287 0.099436 CAGCCCAGATTTTACAGCGC 59.901 55.000 0.00 0.00 0.00 5.92
287 288 0.099436 GCAGCCCAGATTTTACAGCG 59.901 55.000 0.00 0.00 0.00 5.18
288 289 1.133790 CAGCAGCCCAGATTTTACAGC 59.866 52.381 0.00 0.00 0.00 4.40
289 290 1.133790 GCAGCAGCCCAGATTTTACAG 59.866 52.381 0.00 0.00 33.58 2.74
290 291 1.176527 GCAGCAGCCCAGATTTTACA 58.823 50.000 0.00 0.00 33.58 2.41
291 292 1.133790 CTGCAGCAGCCCAGATTTTAC 59.866 52.381 10.14 0.00 41.13 2.01
292 293 1.466856 CTGCAGCAGCCCAGATTTTA 58.533 50.000 10.14 0.00 41.13 1.52
293 294 1.255667 CCTGCAGCAGCCCAGATTTT 61.256 55.000 17.81 0.00 41.13 1.82
294 295 1.681327 CCTGCAGCAGCCCAGATTT 60.681 57.895 17.81 0.00 41.13 2.17
295 296 2.044252 CCTGCAGCAGCCCAGATT 60.044 61.111 17.81 0.00 41.13 2.40
296 297 3.336568 ACCTGCAGCAGCCCAGAT 61.337 61.111 17.81 0.00 41.13 2.90
297 298 4.340246 CACCTGCAGCAGCCCAGA 62.340 66.667 17.81 0.00 41.13 3.86
323 324 0.391228 AAAAACACGGCACCCATTCC 59.609 50.000 0.00 0.00 0.00 3.01
324 325 1.202475 ACAAAAACACGGCACCCATTC 60.202 47.619 0.00 0.00 0.00 2.67
325 326 0.827368 ACAAAAACACGGCACCCATT 59.173 45.000 0.00 0.00 0.00 3.16
326 327 0.103937 CACAAAAACACGGCACCCAT 59.896 50.000 0.00 0.00 0.00 4.00
327 328 1.513158 CACAAAAACACGGCACCCA 59.487 52.632 0.00 0.00 0.00 4.51
328 329 1.880796 GCACAAAAACACGGCACCC 60.881 57.895 0.00 0.00 0.00 4.61
329 330 0.529555 ATGCACAAAAACACGGCACC 60.530 50.000 0.00 0.00 37.30 5.01
330 331 2.126914 TATGCACAAAAACACGGCAC 57.873 45.000 0.00 0.00 37.30 5.01
331 332 2.294512 TCATATGCACAAAAACACGGCA 59.705 40.909 0.00 0.00 39.03 5.69
332 333 2.940147 TCATATGCACAAAAACACGGC 58.060 42.857 0.00 0.00 0.00 5.68
333 334 5.896922 TTTTCATATGCACAAAAACACGG 57.103 34.783 0.00 0.00 0.00 4.94
334 335 6.019156 AGGTTTTTCATATGCACAAAAACACG 60.019 34.615 27.71 0.00 45.58 4.49
335 336 7.224557 AGAGGTTTTTCATATGCACAAAAACAC 59.775 33.333 27.71 23.00 45.58 3.32
336 337 7.271511 AGAGGTTTTTCATATGCACAAAAACA 58.728 30.769 27.71 7.19 45.58 2.83
337 338 7.713764 AGAGGTTTTTCATATGCACAAAAAC 57.286 32.000 23.16 23.16 44.15 2.43
338 339 7.168972 CGAAGAGGTTTTTCATATGCACAAAAA 59.831 33.333 8.64 8.64 0.00 1.94
339 340 6.640499 CGAAGAGGTTTTTCATATGCACAAAA 59.360 34.615 0.00 1.01 0.00 2.44
340 341 6.148948 CGAAGAGGTTTTTCATATGCACAAA 58.851 36.000 0.00 0.00 0.00 2.83
341 342 5.240623 ACGAAGAGGTTTTTCATATGCACAA 59.759 36.000 0.00 0.00 0.00 3.33
342 343 4.759693 ACGAAGAGGTTTTTCATATGCACA 59.240 37.500 0.00 0.00 0.00 4.57
343 344 5.296813 ACGAAGAGGTTTTTCATATGCAC 57.703 39.130 0.00 0.00 0.00 4.57
344 345 4.092821 CGACGAAGAGGTTTTTCATATGCA 59.907 41.667 0.00 0.00 0.00 3.96
345 346 4.578601 CGACGAAGAGGTTTTTCATATGC 58.421 43.478 0.00 0.00 0.00 3.14
346 347 4.330074 AGCGACGAAGAGGTTTTTCATATG 59.670 41.667 0.00 0.00 0.00 1.78
347 348 4.504858 AGCGACGAAGAGGTTTTTCATAT 58.495 39.130 0.00 0.00 0.00 1.78
348 349 3.921677 AGCGACGAAGAGGTTTTTCATA 58.078 40.909 0.00 0.00 0.00 2.15
349 350 2.737252 GAGCGACGAAGAGGTTTTTCAT 59.263 45.455 0.00 0.00 0.00 2.57
350 351 2.132762 GAGCGACGAAGAGGTTTTTCA 58.867 47.619 0.00 0.00 0.00 2.69
351 352 1.459975 GGAGCGACGAAGAGGTTTTTC 59.540 52.381 0.00 0.00 0.00 2.29
352 353 1.509703 GGAGCGACGAAGAGGTTTTT 58.490 50.000 0.00 0.00 0.00 1.94
353 354 0.320508 GGGAGCGACGAAGAGGTTTT 60.321 55.000 0.00 0.00 0.00 2.43
354 355 1.292541 GGGAGCGACGAAGAGGTTT 59.707 57.895 0.00 0.00 0.00 3.27
355 356 2.971452 GGGAGCGACGAAGAGGTT 59.029 61.111 0.00 0.00 0.00 3.50
356 357 3.441290 CGGGAGCGACGAAGAGGT 61.441 66.667 0.00 0.00 0.00 3.85
367 368 9.205161 TAAAATAGTCTTTTTACACGCGGGAGC 62.205 40.741 19.19 0.00 39.89 4.70
368 369 1.792006 AGTCTTTTTACACGCGGGAG 58.208 50.000 19.19 0.00 0.00 4.30
369 370 3.598019 ATAGTCTTTTTACACGCGGGA 57.402 42.857 19.19 0.00 0.00 5.14
370 371 4.673534 AAATAGTCTTTTTACACGCGGG 57.326 40.909 6.92 6.92 0.00 6.13
371 372 5.731263 GCTAAAATAGTCTTTTTACACGCGG 59.269 40.000 12.47 1.27 31.54 6.46
372 373 5.443763 CGCTAAAATAGTCTTTTTACACGCG 59.556 40.000 3.53 3.53 37.14 6.01
373 374 5.731263 CCGCTAAAATAGTCTTTTTACACGC 59.269 40.000 0.00 0.00 31.09 5.34
374 375 6.735063 CACCGCTAAAATAGTCTTTTTACACG 59.265 38.462 0.00 0.00 31.64 4.49
375 376 7.578852 ACACCGCTAAAATAGTCTTTTTACAC 58.421 34.615 0.00 0.00 31.54 2.90
376 377 7.733402 ACACCGCTAAAATAGTCTTTTTACA 57.267 32.000 0.00 0.00 31.54 2.41
379 380 9.673454 CTTTTACACCGCTAAAATAGTCTTTTT 57.327 29.630 0.00 0.00 33.56 1.94
380 381 9.059260 TCTTTTACACCGCTAAAATAGTCTTTT 57.941 29.630 0.00 0.00 0.00 2.27
381 382 8.611654 TCTTTTACACCGCTAAAATAGTCTTT 57.388 30.769 0.00 0.00 0.00 2.52
382 383 8.611654 TTCTTTTACACCGCTAAAATAGTCTT 57.388 30.769 0.00 0.00 0.00 3.01
383 384 8.788325 ATTCTTTTACACCGCTAAAATAGTCT 57.212 30.769 0.00 0.00 0.00 3.24
389 390 8.389603 CGGTATAATTCTTTTACACCGCTAAAA 58.610 33.333 2.68 0.00 40.69 1.52
390 391 7.908230 CGGTATAATTCTTTTACACCGCTAAA 58.092 34.615 2.68 0.00 40.69 1.85
391 392 7.467557 CGGTATAATTCTTTTACACCGCTAA 57.532 36.000 2.68 0.00 40.69 3.09
393 394 5.978934 CGGTATAATTCTTTTACACCGCT 57.021 39.130 2.68 0.00 40.69 5.52
396 397 5.813717 GGCACGGTATAATTCTTTTACACC 58.186 41.667 0.00 0.00 0.00 4.16
424 425 1.205064 CTTCAACTGGCGTGCTTCG 59.795 57.895 0.00 0.00 43.12 3.79
425 426 1.135859 CATCTTCAACTGGCGTGCTTC 60.136 52.381 0.00 0.00 0.00 3.86
426 427 0.877071 CATCTTCAACTGGCGTGCTT 59.123 50.000 0.00 0.00 0.00 3.91
427 428 1.580845 GCATCTTCAACTGGCGTGCT 61.581 55.000 0.00 0.00 0.00 4.40
428 429 1.154150 GCATCTTCAACTGGCGTGC 60.154 57.895 0.00 0.00 0.00 5.34
429 430 0.877071 AAGCATCTTCAACTGGCGTG 59.123 50.000 0.00 0.00 0.00 5.34
430 431 1.609208 AAAGCATCTTCAACTGGCGT 58.391 45.000 0.00 0.00 0.00 5.68
431 432 2.712057 AAAAGCATCTTCAACTGGCG 57.288 45.000 0.00 0.00 0.00 5.69
453 454 9.897744 CATCTAAAAGCATCTTCAACAAGTTTA 57.102 29.630 0.00 0.00 0.00 2.01
454 455 7.383300 GCATCTAAAAGCATCTTCAACAAGTTT 59.617 33.333 0.00 0.00 0.00 2.66
455 456 6.865205 GCATCTAAAAGCATCTTCAACAAGTT 59.135 34.615 0.00 0.00 0.00 2.66
456 457 6.016024 TGCATCTAAAAGCATCTTCAACAAGT 60.016 34.615 0.00 0.00 35.51 3.16
457 458 6.307318 GTGCATCTAAAAGCATCTTCAACAAG 59.693 38.462 0.00 0.00 43.44 3.16
458 459 6.151691 GTGCATCTAAAAGCATCTTCAACAA 58.848 36.000 0.00 0.00 43.44 2.83
459 460 5.241285 TGTGCATCTAAAAGCATCTTCAACA 59.759 36.000 0.00 0.00 43.44 3.33
460 461 5.702865 TGTGCATCTAAAAGCATCTTCAAC 58.297 37.500 0.00 0.00 43.44 3.18
461 462 5.963176 TGTGCATCTAAAAGCATCTTCAA 57.037 34.783 0.00 0.00 43.44 2.69
462 463 5.163591 CCATGTGCATCTAAAAGCATCTTCA 60.164 40.000 0.00 0.00 43.44 3.02
463 464 5.279384 CCATGTGCATCTAAAAGCATCTTC 58.721 41.667 0.00 0.00 43.44 2.87
464 465 4.441079 GCCATGTGCATCTAAAAGCATCTT 60.441 41.667 0.00 0.00 43.44 2.40
465 466 3.067742 GCCATGTGCATCTAAAAGCATCT 59.932 43.478 0.00 0.00 43.44 2.90
466 467 3.378339 GCCATGTGCATCTAAAAGCATC 58.622 45.455 0.00 0.00 43.44 3.91
467 468 2.223641 CGCCATGTGCATCTAAAAGCAT 60.224 45.455 0.00 0.00 43.44 3.79
468 469 1.132834 CGCCATGTGCATCTAAAAGCA 59.867 47.619 0.00 0.00 41.33 3.91
469 470 1.831343 CGCCATGTGCATCTAAAAGC 58.169 50.000 0.00 0.00 41.33 3.51
470 471 1.132834 TGCGCCATGTGCATCTAAAAG 59.867 47.619 4.18 0.00 44.36 2.27
471 472 1.172175 TGCGCCATGTGCATCTAAAA 58.828 45.000 4.18 0.00 44.36 1.52
472 473 2.865492 TGCGCCATGTGCATCTAAA 58.135 47.368 4.18 0.00 44.36 1.85
473 474 4.633769 TGCGCCATGTGCATCTAA 57.366 50.000 4.18 0.00 44.36 2.10
479 480 3.129913 GAGGGAATGCGCCATGTGC 62.130 63.158 4.18 0.46 39.75 4.57
480 481 1.314534 TTGAGGGAATGCGCCATGTG 61.315 55.000 4.18 0.00 0.00 3.21
481 482 0.611618 TTTGAGGGAATGCGCCATGT 60.612 50.000 4.18 0.00 0.00 3.21
482 483 0.179129 GTTTGAGGGAATGCGCCATG 60.179 55.000 4.18 0.00 0.00 3.66
483 484 1.656818 CGTTTGAGGGAATGCGCCAT 61.657 55.000 4.18 0.00 0.00 4.40
484 485 2.331893 CGTTTGAGGGAATGCGCCA 61.332 57.895 4.18 0.00 0.00 5.69
485 486 1.376609 ATCGTTTGAGGGAATGCGCC 61.377 55.000 4.18 0.00 0.00 6.53
486 487 0.028110 GATCGTTTGAGGGAATGCGC 59.972 55.000 0.00 0.00 0.00 6.09
487 488 1.368641 TGATCGTTTGAGGGAATGCG 58.631 50.000 0.00 0.00 0.00 4.73
488 489 2.032549 CGATGATCGTTTGAGGGAATGC 60.033 50.000 6.68 0.00 34.72 3.56
489 490 2.032549 GCGATGATCGTTTGAGGGAATG 60.033 50.000 16.83 0.00 42.81 2.67
490 491 2.158900 AGCGATGATCGTTTGAGGGAAT 60.159 45.455 16.83 0.00 42.81 3.01
491 492 1.207089 AGCGATGATCGTTTGAGGGAA 59.793 47.619 16.83 0.00 42.81 3.97
492 493 0.824109 AGCGATGATCGTTTGAGGGA 59.176 50.000 16.83 0.00 42.81 4.20
493 494 1.656652 AAGCGATGATCGTTTGAGGG 58.343 50.000 15.89 0.00 41.57 4.30
494 495 4.578601 GTTTAAGCGATGATCGTTTGAGG 58.421 43.478 23.82 0.00 42.95 3.86
495 496 4.031314 TCGTTTAAGCGATGATCGTTTGAG 59.969 41.667 23.82 13.22 42.95 3.02
496 497 3.921630 TCGTTTAAGCGATGATCGTTTGA 59.078 39.130 23.82 14.93 42.95 2.69
497 498 4.239505 TCGTTTAAGCGATGATCGTTTG 57.760 40.909 23.82 9.60 42.95 2.93
498 499 3.241995 GCTCGTTTAAGCGATGATCGTTT 60.242 43.478 19.96 19.96 44.97 3.60
499 500 2.281762 GCTCGTTTAAGCGATGATCGTT 59.718 45.455 16.83 7.64 42.81 3.85
500 501 1.852895 GCTCGTTTAAGCGATGATCGT 59.147 47.619 16.83 0.00 42.81 3.73
501 502 2.545148 GCTCGTTTAAGCGATGATCG 57.455 50.000 14.94 11.02 43.89 3.69
506 507 6.921184 ACGAAGGAAGCTCGTTTAAGCGAT 62.921 45.833 14.94 0.17 46.96 4.58
507 508 5.699299 ACGAAGGAAGCTCGTTTAAGCGA 62.699 47.826 13.89 13.89 46.96 4.93
508 509 3.488404 ACGAAGGAAGCTCGTTTAAGCG 61.488 50.000 5.23 5.23 46.96 4.68
509 510 2.067013 ACGAAGGAAGCTCGTTTAAGC 58.933 47.619 0.00 0.00 46.96 3.09
516 517 1.406970 GAGCGAACGAAGGAAGCTCG 61.407 60.000 0.00 0.00 43.62 5.03
517 518 2.364815 GAGCGAACGAAGGAAGCTC 58.635 57.895 0.00 0.00 45.74 4.09
518 519 1.444553 CGAGCGAACGAAGGAAGCT 60.445 57.895 0.00 0.00 41.29 3.74
519 520 2.445438 CCGAGCGAACGAAGGAAGC 61.445 63.158 0.00 0.00 35.09 3.86
520 521 0.179134 ATCCGAGCGAACGAAGGAAG 60.179 55.000 0.00 0.00 34.35 3.46
521 522 0.457853 CATCCGAGCGAACGAAGGAA 60.458 55.000 0.00 0.00 34.35 3.36
522 523 1.138883 CATCCGAGCGAACGAAGGA 59.861 57.895 0.00 3.58 35.09 3.36
523 524 1.878522 CCATCCGAGCGAACGAAGG 60.879 63.158 0.00 0.00 35.09 3.46
524 525 2.517450 GCCATCCGAGCGAACGAAG 61.517 63.158 0.00 0.00 35.09 3.79
525 526 2.508439 GCCATCCGAGCGAACGAA 60.508 61.111 0.00 0.00 35.09 3.85
526 527 4.508128 GGCCATCCGAGCGAACGA 62.508 66.667 0.00 0.00 35.09 3.85
527 528 4.514577 AGGCCATCCGAGCGAACG 62.515 66.667 5.01 0.00 37.47 3.95
528 529 2.586357 GAGGCCATCCGAGCGAAC 60.586 66.667 5.01 0.00 37.47 3.95
529 530 3.074369 TGAGGCCATCCGAGCGAA 61.074 61.111 5.01 0.00 37.47 4.70
530 531 3.838271 GTGAGGCCATCCGAGCGA 61.838 66.667 5.01 0.00 37.47 4.93
531 532 4.899239 GGTGAGGCCATCCGAGCG 62.899 72.222 5.01 0.00 37.47 5.03
532 533 3.785859 TGGTGAGGCCATCCGAGC 61.786 66.667 5.01 0.00 43.61 5.03
539 540 1.360393 AACCTTCCTTGGTGAGGCCA 61.360 55.000 5.01 0.00 45.87 5.36
540 541 0.895559 CAACCTTCCTTGGTGAGGCC 60.896 60.000 0.00 0.00 45.87 5.19
541 542 1.527433 GCAACCTTCCTTGGTGAGGC 61.527 60.000 10.25 0.00 45.87 4.70
543 544 1.815003 GATGCAACCTTCCTTGGTGAG 59.185 52.381 0.00 0.00 40.73 3.51
544 545 1.881925 CGATGCAACCTTCCTTGGTGA 60.882 52.381 0.00 0.00 40.73 4.02
545 546 0.523072 CGATGCAACCTTCCTTGGTG 59.477 55.000 0.00 0.00 40.73 4.17
546 547 0.110486 ACGATGCAACCTTCCTTGGT 59.890 50.000 0.00 0.00 43.11 3.67
547 548 0.523072 CACGATGCAACCTTCCTTGG 59.477 55.000 0.00 0.00 0.00 3.61
548 549 1.522668 TCACGATGCAACCTTCCTTG 58.477 50.000 0.00 0.00 0.00 3.61
549 550 2.489329 CAATCACGATGCAACCTTCCTT 59.511 45.455 0.00 0.00 0.00 3.36
550 551 2.086869 CAATCACGATGCAACCTTCCT 58.913 47.619 0.00 0.00 0.00 3.36
551 552 1.133025 CCAATCACGATGCAACCTTCC 59.867 52.381 0.00 0.00 0.00 3.46
552 553 1.468054 GCCAATCACGATGCAACCTTC 60.468 52.381 0.00 0.00 0.00 3.46
553 554 0.527565 GCCAATCACGATGCAACCTT 59.472 50.000 0.00 0.00 0.00 3.50
554 555 1.647545 CGCCAATCACGATGCAACCT 61.648 55.000 0.00 0.00 0.00 3.50
555 556 1.226379 CGCCAATCACGATGCAACC 60.226 57.895 0.00 0.00 0.00 3.77
556 557 1.226379 CCGCCAATCACGATGCAAC 60.226 57.895 0.00 0.00 0.00 4.17
557 558 2.405805 CCCGCCAATCACGATGCAA 61.406 57.895 0.00 0.00 0.00 4.08
558 559 2.823593 CCCGCCAATCACGATGCA 60.824 61.111 0.00 0.00 0.00 3.96
559 560 4.256090 GCCCGCCAATCACGATGC 62.256 66.667 0.00 0.00 0.00 3.91
560 561 1.932011 TTTGCCCGCCAATCACGATG 61.932 55.000 0.00 0.00 32.49 3.84
561 562 1.247419 TTTTGCCCGCCAATCACGAT 61.247 50.000 0.00 0.00 32.49 3.73
562 563 1.456196 TTTTTGCCCGCCAATCACGA 61.456 50.000 0.00 0.00 32.49 4.35
563 564 1.006805 TTTTTGCCCGCCAATCACG 60.007 52.632 0.00 0.00 32.49 4.35
564 565 0.316841 TCTTTTTGCCCGCCAATCAC 59.683 50.000 0.00 0.00 32.49 3.06
565 566 1.043816 TTCTTTTTGCCCGCCAATCA 58.956 45.000 0.00 0.00 32.49 2.57
566 567 2.068519 CTTTCTTTTTGCCCGCCAATC 58.931 47.619 0.00 0.00 32.49 2.67
567 568 1.691434 TCTTTCTTTTTGCCCGCCAAT 59.309 42.857 0.00 0.00 32.49 3.16
568 569 1.068434 CTCTTTCTTTTTGCCCGCCAA 59.932 47.619 0.00 0.00 0.00 4.52
569 570 0.673437 CTCTTTCTTTTTGCCCGCCA 59.327 50.000 0.00 0.00 0.00 5.69
570 571 0.673985 ACTCTTTCTTTTTGCCCGCC 59.326 50.000 0.00 0.00 0.00 6.13
571 572 1.770957 CACTCTTTCTTTTTGCCCGC 58.229 50.000 0.00 0.00 0.00 6.13
572 573 1.602920 GGCACTCTTTCTTTTTGCCCG 60.603 52.381 0.00 0.00 45.95 6.13
573 574 2.154854 GGCACTCTTTCTTTTTGCCC 57.845 50.000 0.00 0.00 45.95 5.36
575 576 2.385315 GTCGGCACTCTTTCTTTTTGC 58.615 47.619 0.00 0.00 0.00 3.68
576 577 2.618709 AGGTCGGCACTCTTTCTTTTTG 59.381 45.455 0.00 0.00 0.00 2.44
577 578 2.879026 GAGGTCGGCACTCTTTCTTTTT 59.121 45.455 0.00 0.00 32.28 1.94
578 579 2.158813 TGAGGTCGGCACTCTTTCTTTT 60.159 45.455 6.98 0.00 35.98 2.27
579 580 1.416401 TGAGGTCGGCACTCTTTCTTT 59.584 47.619 6.98 0.00 35.98 2.52
580 581 1.048601 TGAGGTCGGCACTCTTTCTT 58.951 50.000 6.98 0.00 35.98 2.52
581 582 1.048601 TTGAGGTCGGCACTCTTTCT 58.951 50.000 6.98 0.00 35.98 2.52
582 583 1.149148 GTTGAGGTCGGCACTCTTTC 58.851 55.000 6.98 0.00 35.98 2.62
583 584 0.468226 TGTTGAGGTCGGCACTCTTT 59.532 50.000 6.98 0.00 35.98 2.52
584 585 0.249911 GTGTTGAGGTCGGCACTCTT 60.250 55.000 6.98 0.00 35.98 2.85
585 586 1.367840 GTGTTGAGGTCGGCACTCT 59.632 57.895 6.98 0.00 35.98 3.24
586 587 2.022129 CGTGTTGAGGTCGGCACTC 61.022 63.158 0.00 0.00 35.55 3.51
587 588 2.029073 CGTGTTGAGGTCGGCACT 59.971 61.111 0.00 0.00 0.00 4.40
588 589 3.712881 GCGTGTTGAGGTCGGCAC 61.713 66.667 0.00 0.00 0.00 5.01
589 590 3.529341 ATGCGTGTTGAGGTCGGCA 62.529 57.895 0.00 0.00 0.00 5.69
590 591 2.740714 GATGCGTGTTGAGGTCGGC 61.741 63.158 0.00 0.00 0.00 5.54
591 592 1.079819 AGATGCGTGTTGAGGTCGG 60.080 57.895 0.00 0.00 0.00 4.79
592 593 1.354337 CCAGATGCGTGTTGAGGTCG 61.354 60.000 0.00 0.00 0.00 4.79
593 594 0.037326 TCCAGATGCGTGTTGAGGTC 60.037 55.000 0.00 0.00 0.00 3.85
594 595 0.036952 CTCCAGATGCGTGTTGAGGT 60.037 55.000 0.00 0.00 0.00 3.85
595 596 0.742281 CCTCCAGATGCGTGTTGAGG 60.742 60.000 8.60 8.60 34.02 3.86
610 611 1.105759 GCTGATTGGTGATGCCCTCC 61.106 60.000 0.00 0.00 36.04 4.30
614 615 1.430632 CGTGCTGATTGGTGATGCC 59.569 57.895 0.00 0.00 37.90 4.40
621 622 1.851021 TTTCGGTGCGTGCTGATTGG 61.851 55.000 0.00 0.00 0.00 3.16
622 623 0.725784 GTTTCGGTGCGTGCTGATTG 60.726 55.000 0.00 0.00 0.00 2.67
629 630 1.008995 CCTTTGGTTTCGGTGCGTG 60.009 57.895 0.00 0.00 0.00 5.34
639 640 6.099557 TGGTGATTGATTCTTTTCCTTTGGTT 59.900 34.615 0.00 0.00 0.00 3.67
640 641 5.602145 TGGTGATTGATTCTTTTCCTTTGGT 59.398 36.000 0.00 0.00 0.00 3.67
641 642 6.100404 TGGTGATTGATTCTTTTCCTTTGG 57.900 37.500 0.00 0.00 0.00 3.28
642 643 6.091713 GCATGGTGATTGATTCTTTTCCTTTG 59.908 38.462 0.00 0.00 0.00 2.77
643 644 6.168389 GCATGGTGATTGATTCTTTTCCTTT 58.832 36.000 0.00 0.00 0.00 3.11
644 645 5.246656 TGCATGGTGATTGATTCTTTTCCTT 59.753 36.000 0.00 0.00 0.00 3.36
645 646 4.773674 TGCATGGTGATTGATTCTTTTCCT 59.226 37.500 0.00 0.00 0.00 3.36
655 656 1.044231 GGGGCATGCATGGTGATTGA 61.044 55.000 27.34 0.00 0.00 2.57
657 658 2.129146 CGGGGCATGCATGGTGATT 61.129 57.895 27.34 0.00 0.00 2.57
834 836 1.516603 GAGAAGTAGGCGCACCGAC 60.517 63.158 10.83 0.00 42.76 4.79
925 949 1.511318 TTGATGTGGTTTGCCGTCCG 61.511 55.000 0.00 0.00 37.67 4.79
947 976 8.704849 TTTAAAATGATGAGAGAAGGTTTCCA 57.295 30.769 0.00 0.00 0.00 3.53
970 1005 1.654105 GAGTCAACGACGCGATGATTT 59.346 47.619 15.93 4.59 40.38 2.17
975 1010 0.039437 ACAAGAGTCAACGACGCGAT 60.039 50.000 15.93 0.00 37.43 4.58
995 1030 2.969238 CGGTCTCCGCCATCATGC 60.969 66.667 0.00 0.00 41.17 4.06
1332 1431 3.625897 CTGACCACGTCCCCTGCA 61.626 66.667 0.00 0.00 0.00 4.41
1335 1434 1.608627 GTACCTGACCACGTCCCCT 60.609 63.158 0.00 0.00 0.00 4.79
1347 1446 3.740397 TCCGCGTCCACGTACCTG 61.740 66.667 4.92 0.00 42.22 4.00
1494 1653 5.111989 CAATCGATTCCACATGTGACTAGT 58.888 41.667 27.46 8.78 0.00 2.57
1496 1655 3.871006 GCAATCGATTCCACATGTGACTA 59.129 43.478 27.46 11.74 0.00 2.59
1556 1741 1.571460 GTTGCAGAGCACGAACCTG 59.429 57.895 0.00 0.00 38.71 4.00
1654 1848 0.110104 GGGGCTGGAGAATGGAGATG 59.890 60.000 0.00 0.00 0.00 2.90
1699 1902 1.064017 TGCCCAGGTTCAGACAAAACT 60.064 47.619 0.00 0.00 0.00 2.66
1733 1969 1.869690 GCTCACGCTCCCAAGAAAC 59.130 57.895 0.00 0.00 0.00 2.78
1805 2041 1.541233 GCGATCGATCATTCCTTGGGT 60.541 52.381 24.40 0.00 0.00 4.51
1870 2110 1.521681 GACAGGGATACAGTGCGGC 60.522 63.158 0.00 0.00 39.74 6.53
1872 2112 3.735237 ATTAGACAGGGATACAGTGCG 57.265 47.619 0.00 0.00 39.74 5.34
1928 2172 1.134818 TCATGTCAGGCACCGATGTAC 60.135 52.381 0.00 0.00 0.00 2.90
1986 2230 7.759489 AGCCTAATTGTTGTAATCAAGTTCA 57.241 32.000 0.00 0.00 33.97 3.18
1992 2236 9.853555 CAACATTTAGCCTAATTGTTGTAATCA 57.146 29.630 27.98 0.00 45.51 2.57
1999 2243 7.775053 TCTTCCAACATTTAGCCTAATTGTT 57.225 32.000 15.49 15.49 40.71 2.83
2000 2244 7.232534 TGTTCTTCCAACATTTAGCCTAATTGT 59.767 33.333 6.25 6.25 34.72 2.71
2001 2245 7.601856 TGTTCTTCCAACATTTAGCCTAATTG 58.398 34.615 5.11 5.11 0.00 2.32
2002 2246 7.775053 TGTTCTTCCAACATTTAGCCTAATT 57.225 32.000 0.00 0.00 0.00 1.40
2003 2247 7.836183 AGATGTTCTTCCAACATTTAGCCTAAT 59.164 33.333 1.66 0.00 40.62 1.73
2004 2248 7.175104 AGATGTTCTTCCAACATTTAGCCTAA 58.825 34.615 1.66 0.00 40.62 2.69
2006 2250 5.574188 AGATGTTCTTCCAACATTTAGCCT 58.426 37.500 1.66 0.00 40.62 4.58
2007 2251 5.904362 AGATGTTCTTCCAACATTTAGCC 57.096 39.130 1.66 0.00 40.62 3.93
2008 2252 7.965107 CAGTAAGATGTTCTTCCAACATTTAGC 59.035 37.037 1.66 0.00 40.62 3.09
2009 2253 9.219603 TCAGTAAGATGTTCTTCCAACATTTAG 57.780 33.333 1.66 0.00 40.62 1.85
2018 2576 3.522553 CCCGTCAGTAAGATGTTCTTCC 58.477 50.000 0.00 0.00 37.89 3.46
2031 2589 0.179084 CGTTGGATATGCCCGTCAGT 60.179 55.000 0.00 0.00 34.97 3.41
2050 2608 6.171213 AGCCTGTTACTATACACCTTTGTTC 58.829 40.000 0.00 0.00 37.15 3.18
2098 2656 5.177326 ACAAAAACGTACGCTCCCAATATA 58.823 37.500 16.72 0.00 0.00 0.86
2109 2667 4.702247 TCAGTGATGACAAAAACGTACG 57.298 40.909 15.01 15.01 0.00 3.67
2138 2697 7.191551 AGTTGATGCGATTTGATTTCATACTG 58.808 34.615 0.00 0.00 0.00 2.74
2162 2721 1.529226 TCATGCCACCCGTGTAAAAG 58.471 50.000 0.00 0.00 0.00 2.27
2212 2771 2.795329 TGGGGTGATTTTCTCTCAAGC 58.205 47.619 0.00 0.00 0.00 4.01
2275 2843 1.656441 GGCTGGTGCAAGAACTGTG 59.344 57.895 0.00 0.00 41.91 3.66
2294 2862 1.815421 CACTACATGCCCGCTGGTC 60.815 63.158 0.00 0.00 0.00 4.02
2295 2863 2.268920 CACTACATGCCCGCTGGT 59.731 61.111 0.00 0.00 0.00 4.00
2307 2875 3.753272 TGCCTTTCTTTCTGATGCACTAC 59.247 43.478 0.00 0.00 0.00 2.73
2353 2921 0.321210 TTTGCTCCGGAGAATTGCGA 60.321 50.000 35.69 17.04 41.04 5.10
2385 2953 2.047274 ACCATTGACGCCGACCAG 60.047 61.111 0.00 0.00 0.00 4.00
2392 2960 2.202349 GCGCTTCACCATTGACGC 60.202 61.111 0.00 0.00 42.30 5.19
2487 3055 3.931468 TGTTTGTGACAAAAATGCACCAG 59.069 39.130 12.89 0.00 34.69 4.00
2521 3089 2.240500 GCGCCCAGCTTACGATCAG 61.241 63.158 0.00 0.00 44.04 2.90
2658 3226 1.012086 CGGTCGTCTCGGATCTACAA 58.988 55.000 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.