Multiple sequence alignment - TraesCS2D01G112800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G112800 chr2D 100.000 3336 0 0 1 3336 62549720 62553055 0.000000e+00 6161.0
1 TraesCS2D01G112800 chr2D 78.427 496 71 17 2831 3326 62289144 62289603 1.170000e-74 291.0
2 TraesCS2D01G112800 chr2D 79.448 326 47 15 2819 3134 62558943 62559258 2.610000e-51 213.0
3 TraesCS2D01G112800 chr2D 89.474 95 10 0 691 785 62550247 62550341 1.630000e-23 121.0
4 TraesCS2D01G112800 chr2D 89.474 95 10 0 528 622 62550410 62550504 1.630000e-23 121.0
5 TraesCS2D01G112800 chr2B 93.867 2674 123 16 1 2649 98253078 98255735 0.000000e+00 3991.0
6 TraesCS2D01G112800 chr2B 90.369 2658 219 23 1 2649 98150729 98153358 0.000000e+00 3456.0
7 TraesCS2D01G112800 chr2B 88.372 645 65 8 157 799 98149927 98150563 0.000000e+00 767.0
8 TraesCS2D01G112800 chr2B 94.385 374 14 2 2958 3326 98256389 98256760 4.830000e-158 568.0
9 TraesCS2D01G112800 chr2B 86.689 293 28 7 3048 3336 98249616 98249901 6.950000e-82 315.0
10 TraesCS2D01G112800 chr2B 78.728 503 74 22 2833 3330 97933151 97933625 4.180000e-79 305.0
11 TraesCS2D01G112800 chr2B 90.338 207 11 4 2724 2927 98256125 98256325 2.550000e-66 263.0
12 TraesCS2D01G112800 chr2B 81.424 323 41 17 2819 3134 98263918 98264228 2.570000e-61 246.0
13 TraesCS2D01G112800 chr2B 79.167 312 53 11 2831 3134 98285993 98286300 4.360000e-49 206.0
14 TraesCS2D01G112800 chr2B 83.945 218 29 4 440 657 98150014 98150225 1.570000e-48 204.0
15 TraesCS2D01G112800 chr2B 89.474 95 10 0 691 785 98151252 98151346 1.630000e-23 121.0
16 TraesCS2D01G112800 chr2B 89.474 95 10 0 691 785 98253600 98253694 1.630000e-23 121.0
17 TraesCS2D01G112800 chr2B 88.636 88 10 0 528 615 98151415 98151502 1.270000e-19 108.0
18 TraesCS2D01G112800 chr2B 84.043 94 9 2 692 785 98150103 98150190 5.930000e-13 86.1
19 TraesCS2D01G112800 chr2A 91.940 670 41 7 2666 3326 63588074 63588739 0.000000e+00 926.0
20 TraesCS2D01G112800 chr2A 78.715 498 75 20 2831 3326 63137485 63137953 1.500000e-78 303.0
21 TraesCS2D01G112800 chr2A 82.298 322 41 15 2816 3134 63606463 63606771 7.100000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G112800 chr2D 62549720 62553055 3335 False 2134.333333 6161 92.982667 1 3336 3 chr2D.!!$F3 3335
1 TraesCS2D01G112800 chr2B 98249616 98256760 7144 False 1051.600000 3991 90.950600 1 3336 5 chr2B.!!$F5 3335
2 TraesCS2D01G112800 chr2B 98149927 98153358 3431 False 790.350000 3456 87.473167 1 2649 6 chr2B.!!$F4 2648
3 TraesCS2D01G112800 chr2A 63588074 63588739 665 False 926.000000 926 91.940000 2666 3326 1 chr2A.!!$F2 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 3674 0.107831 GTGAACACCCAGCCTGTGTA 59.892 55.0 4.2 0.0 45.78 2.9 F
1074 4611 0.109342 CCAACCTCACTTCAGCCACT 59.891 55.0 0.0 0.0 0.00 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 5113 0.393077 CCGTGGTTCCAGAACTCAGT 59.607 55.0 10.19 0.0 40.94 3.41 R
2600 6150 0.179084 ACTGACGGGCATATCCAACG 60.179 55.0 0.00 0.0 36.21 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 3641 2.299013 GGTGTCACTGTATCTGTGTCCA 59.701 50.000 2.35 3.55 35.37 4.02
119 3642 3.579709 GTGTCACTGTATCTGTGTCCAG 58.420 50.000 0.00 0.00 40.25 3.86
124 3647 6.014584 TGTCACTGTATCTGTGTCCAGTTTAT 60.015 38.462 6.65 0.00 39.82 1.40
128 3651 5.030147 TGTATCTGTGTCCAGTTTATCCCT 58.970 41.667 0.00 0.00 39.82 4.20
130 3653 4.286297 TCTGTGTCCAGTTTATCCCTTG 57.714 45.455 0.00 0.00 39.82 3.61
151 3674 0.107831 GTGAACACCCAGCCTGTGTA 59.892 55.000 4.20 0.00 45.78 2.90
159 3682 3.823873 CACCCAGCCTGTGTACAAAAATA 59.176 43.478 0.00 0.00 0.00 1.40
213 3737 7.164230 TGTTGCGATTTAAGGGTTTATTCAT 57.836 32.000 0.00 0.00 0.00 2.57
270 3794 4.603131 ACACATTAATTGGAGCATGGAGT 58.397 39.130 0.00 0.00 0.00 3.85
287 3811 7.664731 AGCATGGAGTATGAAGATTCCATTTAG 59.335 37.037 2.26 0.00 45.68 1.85
432 3956 9.616156 TTTATGGCCGAGTATTAAACTATTTCA 57.384 29.630 0.00 0.00 39.07 2.69
460 3984 3.731867 CGATTTGCCACATTAGTTGGAGC 60.732 47.826 0.00 0.00 0.00 4.70
491 4015 5.643348 CACATAGACTCCATTTAGTGCAACA 59.357 40.000 0.00 0.00 41.43 3.33
492 4016 5.643777 ACATAGACTCCATTTAGTGCAACAC 59.356 40.000 0.00 0.00 41.43 3.32
574 4098 7.599630 ACATAAATGCAACACATCCATTTTC 57.400 32.000 0.00 0.00 38.34 2.29
592 4116 6.373216 CCATTTTCGACATTCTTACACCCTAA 59.627 38.462 0.00 0.00 0.00 2.69
774 4301 7.757173 CACCCGAGTATGATGTATCTCATTTAG 59.243 40.741 0.00 0.00 37.13 1.85
854 4388 6.073331 GCAGCACATCCAATTTAGATACTCTC 60.073 42.308 0.00 0.00 0.00 3.20
875 4409 8.718734 ACTCTCATTTACGGAAAAGTATCAAAC 58.281 33.333 0.00 0.00 0.00 2.93
887 4421 3.944087 AGTATCAAACTGCTCCTTCCAC 58.056 45.455 0.00 0.00 36.93 4.02
895 4429 1.808945 CTGCTCCTTCCACACACAATC 59.191 52.381 0.00 0.00 0.00 2.67
1014 4551 3.374058 CGTCAACCATGTCCTGTTTATCC 59.626 47.826 0.00 0.00 0.00 2.59
1016 4553 2.038387 ACCATGTCCTGTTTATCCGC 57.962 50.000 0.00 0.00 0.00 5.54
1074 4611 0.109342 CCAACCTCACTTCAGCCACT 59.891 55.000 0.00 0.00 0.00 4.00
1656 5193 1.070134 TCGTTCAAGTACCAGCTTGCT 59.930 47.619 0.00 0.00 43.92 3.91
1658 5195 1.068954 GTTCAAGTACCAGCTTGCTGC 60.069 52.381 16.37 4.12 43.92 5.25
1715 5252 0.250124 TTCTACCACGGCCAACACAG 60.250 55.000 2.24 0.00 0.00 3.66
1827 5367 1.821332 CTTCATCGGCTTGGAGGGC 60.821 63.158 0.00 0.00 0.00 5.19
1992 5532 1.012086 CGGTCGTCTCGGATCTACAA 58.988 55.000 0.00 0.00 0.00 2.41
2129 5669 2.240500 GCGCCCAGCTTACGATCAG 61.241 63.158 0.00 0.00 44.04 2.90
2163 5703 3.931468 TGTTTGTGACAAAAATGCACCAG 59.069 39.130 12.89 0.00 34.69 4.00
2258 5798 2.202349 GCGCTTCACCATTGACGC 60.202 61.111 0.00 0.00 42.30 5.19
2265 5805 2.047274 ACCATTGACGCCGACCAG 60.047 61.111 0.00 0.00 0.00 4.00
2297 5837 0.321210 TTTGCTCCGGAGAATTGCGA 60.321 50.000 35.69 17.04 41.04 5.10
2343 5883 3.753272 TGCCTTTCTTTCTGATGCACTAC 59.247 43.478 0.00 0.00 0.00 2.73
2355 5895 2.268920 CACTACATGCCCGCTGGT 59.731 61.111 0.00 0.00 0.00 4.00
2356 5896 1.815421 CACTACATGCCCGCTGGTC 60.815 63.158 0.00 0.00 0.00 4.02
2357 5897 2.586079 CTACATGCCCGCTGGTCG 60.586 66.667 0.00 0.00 38.08 4.79
2375 5915 1.656441 GGCTGGTGCAAGAACTGTG 59.344 57.895 0.00 0.00 41.91 3.66
2438 5987 2.795329 TGGGGTGATTTTCTCTCAAGC 58.205 47.619 0.00 0.00 0.00 4.01
2488 6037 1.529226 TCATGCCACCCGTGTAAAAG 58.471 50.000 0.00 0.00 0.00 2.27
2512 6061 7.191551 AGTTGATGCGATTTGATTTCATACTG 58.808 34.615 0.00 0.00 0.00 2.74
2541 6091 4.702247 TCAGTGATGACAAAAACGTACG 57.298 40.909 15.01 15.01 0.00 3.67
2552 6102 5.177326 ACAAAAACGTACGCTCCCAATATA 58.823 37.500 16.72 0.00 0.00 0.86
2600 6150 6.171213 AGCCTGTTACTATACACCTTTGTTC 58.829 40.000 0.00 0.00 37.15 3.18
2619 6169 0.179084 CGTTGGATATGCCCGTCAGT 60.179 55.000 0.00 0.00 34.97 3.41
2632 6182 3.522553 CCCGTCAGTAAGATGTTCTTCC 58.477 50.000 0.00 0.00 37.89 3.46
2641 6191 9.219603 TCAGTAAGATGTTCTTCCAACATTTAG 57.780 33.333 1.66 0.00 40.62 1.85
2643 6193 5.904362 AGATGTTCTTCCAACATTTAGCC 57.096 39.130 1.66 0.00 40.62 3.93
2646 6196 7.175104 AGATGTTCTTCCAACATTTAGCCTAA 58.825 34.615 1.66 0.00 40.62 2.69
2649 6199 7.601856 TGTTCTTCCAACATTTAGCCTAATTG 58.398 34.615 5.11 5.11 0.00 2.32
2651 6201 7.775053 TCTTCCAACATTTAGCCTAATTGTT 57.225 32.000 15.49 15.49 40.71 2.83
2658 6208 9.853555 CAACATTTAGCCTAATTGTTGTAATCA 57.146 29.630 27.98 0.00 45.51 2.57
2664 6214 7.759489 AGCCTAATTGTTGTAATCAAGTTCA 57.241 32.000 0.00 0.00 33.97 3.18
2701 6251 1.888512 GCAGAAGATGAACCCAAAGCA 59.111 47.619 0.00 0.00 0.00 3.91
2722 6586 1.134818 TCATGTCAGGCACCGATGTAC 60.135 52.381 0.00 0.00 0.00 2.90
2778 6646 3.735237 ATTAGACAGGGATACAGTGCG 57.265 47.619 0.00 0.00 39.74 5.34
2780 6648 1.521681 GACAGGGATACAGTGCGGC 60.522 63.158 0.00 0.00 39.74 6.53
2815 6687 1.267806 GGCACAATGTCAACACTGGAG 59.732 52.381 0.00 0.00 0.00 3.86
2829 6705 0.465097 CTGGAGCTGGAAATGGCGAT 60.465 55.000 0.00 0.00 0.00 4.58
2830 6706 0.464373 TGGAGCTGGAAATGGCGATC 60.464 55.000 0.00 0.00 0.00 3.69
2831 6707 1.502163 GGAGCTGGAAATGGCGATCG 61.502 60.000 11.69 11.69 0.00 3.69
2832 6708 0.530650 GAGCTGGAAATGGCGATCGA 60.531 55.000 21.57 0.00 0.00 3.59
2845 6721 1.541233 GCGATCGATCATTCCTTGGGT 60.541 52.381 24.40 0.00 0.00 4.51
2917 6793 1.869690 GCTCACGCTCCCAAGAAAC 59.130 57.895 0.00 0.00 0.00 2.78
2950 6826 1.398692 TGCCCAGGTTCAGACAAAAC 58.601 50.000 0.00 0.00 0.00 2.43
2951 6827 1.064017 TGCCCAGGTTCAGACAAAACT 60.064 47.619 0.00 0.00 0.00 2.66
2996 6905 0.110104 GGGGCTGGAGAATGGAGATG 59.890 60.000 0.00 0.00 0.00 2.90
3094 7008 1.571460 GTTGCAGAGCACGAACCTG 59.429 57.895 0.00 0.00 38.71 4.00
3115 7029 1.454111 CTCCCCGTCGATCACCTCT 60.454 63.158 0.00 0.00 0.00 3.69
3154 7068 3.871006 GCAATCGATTCCACATGTGACTA 59.129 43.478 27.46 11.74 0.00 2.59
3156 7070 5.111989 CAATCGATTCCACATGTGACTAGT 58.888 41.667 27.46 8.78 0.00 2.57
3303 7221 3.740397 TCCGCGTCCACGTACCTG 61.740 66.667 4.92 0.00 42.22 4.00
3315 7233 1.608627 GTACCTGACCACGTCCCCT 60.609 63.158 0.00 0.00 0.00 4.79
3318 7236 3.625897 CTGACCACGTCCCCTGCA 61.626 66.667 0.00 0.00 0.00 4.41
3334 7252 2.630317 CAGCGGCTGCAATCGATC 59.370 61.111 21.93 0.00 46.23 3.69
3335 7253 2.963854 AGCGGCTGCAATCGATCG 60.964 61.111 21.93 9.36 46.23 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 3563 0.392706 ATGTGAGCACACTTCGGACA 59.607 50.000 15.43 0.00 45.05 4.02
71 3594 8.375493 TCCTGATCATGATCATCATATTCTGA 57.625 34.615 32.96 17.10 45.74 3.27
92 3615 2.828520 ACAGATACAGTGACACCTCCTG 59.171 50.000 0.84 5.86 0.00 3.86
93 3616 2.828520 CACAGATACAGTGACACCTCCT 59.171 50.000 0.84 0.00 39.30 3.69
118 3641 3.499745 GGTGTTCACCCAAGGGATAAACT 60.500 47.826 13.15 0.00 38.96 2.66
119 3642 2.823747 GGTGTTCACCCAAGGGATAAAC 59.176 50.000 13.15 12.47 38.96 2.01
260 3784 4.965814 TGGAATCTTCATACTCCATGCTC 58.034 43.478 0.00 0.00 32.97 4.26
270 3794 7.392953 TGTGTTGCACTAAATGGAATCTTCATA 59.607 33.333 0.00 0.00 41.17 2.15
314 3838 1.998315 GAGCACATCTATATGGCGCAG 59.002 52.381 10.83 0.00 37.82 5.18
360 3884 3.957383 AAAAATGGACGTGGTGCAC 57.043 47.368 8.80 8.80 36.59 4.57
381 3905 9.860650 AATTAGACACATAATAATGCAAGGGTA 57.139 29.630 0.00 0.00 36.50 3.69
391 3915 9.214957 CTCGGCCATAAATTAGACACATAATAA 57.785 33.333 2.24 0.00 0.00 1.40
395 3919 6.169557 ACTCGGCCATAAATTAGACACATA 57.830 37.500 2.24 0.00 0.00 2.29
413 3937 6.898189 GTGCGTTGAAATAGTTTAATACTCGG 59.102 38.462 0.00 0.00 38.33 4.63
460 3984 7.598118 CACTAAATGGAGTCTATGTGCTCTATG 59.402 40.741 0.00 0.00 34.04 2.23
475 3999 5.878332 TGTATGTGTTGCACTAAATGGAG 57.122 39.130 0.00 0.00 35.11 3.86
491 4015 7.178274 TGGTGAAAGAATGCCTAAAATGTATGT 59.822 33.333 0.00 0.00 0.00 2.29
492 4016 7.546358 TGGTGAAAGAATGCCTAAAATGTATG 58.454 34.615 0.00 0.00 0.00 2.39
574 4098 7.872993 ACATCATATTAGGGTGTAAGAATGTCG 59.127 37.037 0.00 0.00 0.00 4.35
592 4116 8.134202 TCATCCGTAAATGAGGTACATCATAT 57.866 34.615 22.26 9.09 39.00 1.78
774 4301 6.518493 TCCAATTAATGTGTATACTCGTCCC 58.482 40.000 4.17 0.00 0.00 4.46
854 4388 7.305474 AGCAGTTTGATACTTTTCCGTAAATG 58.695 34.615 0.00 0.00 33.85 2.32
860 4394 4.003648 AGGAGCAGTTTGATACTTTTCCG 58.996 43.478 0.00 0.00 39.85 4.30
875 4409 1.808945 GATTGTGTGTGGAAGGAGCAG 59.191 52.381 0.00 0.00 0.00 4.24
887 4421 7.369607 TCCAATTTAATGTGTCAGATTGTGTG 58.630 34.615 5.49 0.00 0.00 3.82
895 4429 6.878923 TCCTACACTCCAATTTAATGTGTCAG 59.121 38.462 0.00 0.00 41.35 3.51
993 4530 3.374058 CGGATAAACAGGACATGGTTGAC 59.626 47.826 0.00 0.00 39.84 3.18
1014 4551 2.289002 GAGGAAACATAGCATGGAAGCG 59.711 50.000 0.00 0.00 40.15 4.68
1016 4553 4.162040 AGGAGGAAACATAGCATGGAAG 57.838 45.455 0.00 0.00 33.60 3.46
1074 4611 1.421268 AGGCTGAATCCGATATTGCCA 59.579 47.619 16.05 0.00 41.12 4.92
1166 4703 2.794103 TGTTCATGGGGTTCACATCAG 58.206 47.619 0.00 0.00 0.00 2.90
1437 4974 1.621301 CGGAGAAGCTGCACTTGTCG 61.621 60.000 15.07 9.75 47.00 4.35
1576 5113 0.393077 CCGTGGTTCCAGAACTCAGT 59.607 55.000 10.19 0.00 40.94 3.41
1577 5114 0.951040 GCCGTGGTTCCAGAACTCAG 60.951 60.000 10.19 2.54 40.94 3.35
1604 5141 0.961019 GTTCAAGCTCATGGCACCAA 59.039 50.000 8.58 0.00 44.79 3.67
1665 5202 4.292977 AGAAAACTTTGAAGTGGCGAAG 57.707 40.909 0.00 0.00 39.66 3.79
1981 5521 1.337071 GAGGCGATGTTGTAGATCCGA 59.663 52.381 0.00 0.00 0.00 4.55
2129 5669 3.244422 TGTCACAAACAGTAGATCCCACC 60.244 47.826 0.00 0.00 32.81 4.61
2258 5798 4.668151 AGAGTAGCCTCTGGTCGG 57.332 61.111 0.00 0.00 46.45 4.79
2265 5805 2.223618 CGGAGCAAAGTAGAGTAGCCTC 60.224 54.545 0.00 0.00 38.04 4.70
2297 5837 7.589395 CATATTGATCTAGCTACTGTCGTTCT 58.411 38.462 0.00 0.00 0.00 3.01
2351 5891 3.052082 CTTGCACCAGCCGACCAG 61.052 66.667 0.00 0.00 41.13 4.00
2352 5892 3.113514 TTCTTGCACCAGCCGACCA 62.114 57.895 0.00 0.00 41.13 4.02
2353 5893 2.281484 TTCTTGCACCAGCCGACC 60.281 61.111 0.00 0.00 41.13 4.79
2354 5894 1.598130 AGTTCTTGCACCAGCCGAC 60.598 57.895 0.00 0.00 41.13 4.79
2355 5895 1.597854 CAGTTCTTGCACCAGCCGA 60.598 57.895 0.00 0.00 41.13 5.54
2356 5896 1.893808 ACAGTTCTTGCACCAGCCG 60.894 57.895 0.00 0.00 41.13 5.52
2357 5897 1.103398 ACACAGTTCTTGCACCAGCC 61.103 55.000 0.00 0.00 41.13 4.85
2375 5915 9.777297 ATTATTTATTTATTTGTCCCCATGCAC 57.223 29.630 0.00 0.00 0.00 4.57
2406 5955 6.327365 AGAAAATCACCCCAAAAGTTCTGATT 59.673 34.615 0.00 0.00 31.23 2.57
2462 6011 3.096092 ACACGGGTGGCATGATATTTTT 58.904 40.909 0.00 0.00 34.19 1.94
2488 6037 6.415867 CCAGTATGAAATCAAATCGCATCAAC 59.584 38.462 0.00 0.00 39.69 3.18
2512 6061 4.771590 TTTGTCATCACTGATTCTTGCC 57.228 40.909 0.00 0.00 32.98 4.52
2541 6091 4.973168 TCATGTCCTTGTATATTGGGAGC 58.027 43.478 0.00 0.00 0.00 4.70
2552 6102 4.592942 ACAGCAATACATCATGTCCTTGT 58.407 39.130 12.34 2.55 30.44 3.16
2600 6150 0.179084 ACTGACGGGCATATCCAACG 60.179 55.000 0.00 0.00 36.21 4.10
2619 6169 7.175104 AGGCTAAATGTTGGAAGAACATCTTA 58.825 34.615 0.00 0.00 39.73 2.10
2641 6191 6.528072 GCTGAACTTGATTACAACAATTAGGC 59.472 38.462 0.00 0.00 32.27 3.93
2643 6193 9.462174 TTTGCTGAACTTGATTACAACAATTAG 57.538 29.630 0.00 0.00 32.27 1.73
2646 6196 6.417635 CGTTTGCTGAACTTGATTACAACAAT 59.582 34.615 0.00 0.00 36.06 2.71
2649 6199 4.675114 CCGTTTGCTGAACTTGATTACAAC 59.325 41.667 2.83 0.00 36.06 3.32
2651 6201 3.304391 GCCGTTTGCTGAACTTGATTACA 60.304 43.478 2.83 0.00 36.06 2.41
2652 6202 3.234386 GCCGTTTGCTGAACTTGATTAC 58.766 45.455 2.83 0.00 36.06 1.89
2654 6204 1.334960 CGCCGTTTGCTGAACTTGATT 60.335 47.619 2.83 0.00 38.05 2.57
2655 6205 0.238289 CGCCGTTTGCTGAACTTGAT 59.762 50.000 2.83 0.00 38.05 2.57
2657 6207 0.238289 ATCGCCGTTTGCTGAACTTG 59.762 50.000 2.83 0.00 38.05 3.16
2658 6208 0.238289 CATCGCCGTTTGCTGAACTT 59.762 50.000 2.83 0.00 38.05 2.66
2660 6210 0.452784 GTCATCGCCGTTTGCTGAAC 60.453 55.000 0.00 0.00 38.05 3.18
2661 6211 0.882484 TGTCATCGCCGTTTGCTGAA 60.882 50.000 0.00 0.00 38.05 3.02
2662 6212 1.291184 CTGTCATCGCCGTTTGCTGA 61.291 55.000 0.00 0.00 38.05 4.26
2663 6213 1.133253 CTGTCATCGCCGTTTGCTG 59.867 57.895 0.00 0.00 38.05 4.41
2664 6214 2.680913 GCTGTCATCGCCGTTTGCT 61.681 57.895 0.00 0.00 38.05 3.91
2701 6251 0.543277 ACATCGGTGCCTGACATGAT 59.457 50.000 0.00 0.00 0.00 2.45
2722 6586 3.081061 TGTTGGATCCTCCGAATGTTTG 58.919 45.455 14.23 0.00 40.17 2.93
2743 6607 9.710818 TCCCTGTCTAATTACTGTACTCTATTT 57.289 33.333 0.00 0.00 0.00 1.40
2804 6674 2.507484 CATTTCCAGCTCCAGTGTTGA 58.493 47.619 0.00 0.00 0.00 3.18
2815 6687 0.514691 GATCGATCGCCATTTCCAGC 59.485 55.000 11.09 0.00 0.00 4.85
2829 6705 2.620367 CCCAAACCCAAGGAATGATCGA 60.620 50.000 0.00 0.00 0.00 3.59
2830 6706 1.750778 CCCAAACCCAAGGAATGATCG 59.249 52.381 0.00 0.00 0.00 3.69
2831 6707 1.482182 GCCCAAACCCAAGGAATGATC 59.518 52.381 0.00 0.00 0.00 2.92
2832 6708 1.079323 AGCCCAAACCCAAGGAATGAT 59.921 47.619 0.00 0.00 0.00 2.45
2845 6721 2.877097 TGATAGTCAAGCAGCCCAAA 57.123 45.000 0.00 0.00 0.00 3.28
2950 6826 1.479730 TGCAGAGCTAGTGGTCATGAG 59.520 52.381 0.00 0.00 42.66 2.90
2951 6827 1.479730 CTGCAGAGCTAGTGGTCATGA 59.520 52.381 8.42 0.00 42.66 3.07
2980 6889 6.713903 TGATTTATTCATCTCCATTCTCCAGC 59.286 38.462 0.00 0.00 0.00 4.85
2996 6905 7.805071 CGCCATCAAGAGGTAATTGATTTATTC 59.195 37.037 0.00 0.00 43.20 1.75
3094 7008 4.222847 GTGATCGACGGGGAGCCC 62.223 72.222 0.00 0.00 41.09 5.19
3115 7029 3.156714 CAGGTGCAGGGTGTGGTA 58.843 61.111 0.00 0.00 0.00 3.25
3154 7068 4.272018 CGATTGCTGCTCTGCTTAATTACT 59.728 41.667 0.00 0.00 0.00 2.24
3156 7070 3.561310 CCGATTGCTGCTCTGCTTAATTA 59.439 43.478 0.00 0.00 0.00 1.40
3318 7236 2.963854 CGATCGATTGCAGCCGCT 60.964 61.111 10.26 0.00 39.64 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.