Multiple sequence alignment - TraesCS2D01G112700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G112700 | chr2D | 100.000 | 6192 | 0 | 0 | 1 | 6192 | 62406833 | 62400642 | 0.000000e+00 | 11435.0 |
1 | TraesCS2D01G112700 | chr2D | 96.520 | 431 | 14 | 1 | 5762 | 6192 | 473090096 | 473090525 | 0.000000e+00 | 712.0 |
2 | TraesCS2D01G112700 | chr2D | 90.852 | 317 | 27 | 2 | 5423 | 5737 | 473089796 | 473090112 | 2.060000e-114 | 424.0 |
3 | TraesCS2D01G112700 | chr2D | 89.967 | 299 | 27 | 3 | 247 | 543 | 328796243 | 328796540 | 3.500000e-102 | 383.0 |
4 | TraesCS2D01G112700 | chr2D | 94.340 | 53 | 3 | 0 | 5359 | 5411 | 20348843 | 20348895 | 1.430000e-11 | 82.4 |
5 | TraesCS2D01G112700 | chr2A | 95.246 | 2482 | 72 | 24 | 2887 | 5356 | 63361683 | 63359236 | 0.000000e+00 | 3888.0 |
6 | TraesCS2D01G112700 | chr2A | 90.320 | 1529 | 86 | 30 | 533 | 2035 | 63364058 | 63362566 | 0.000000e+00 | 1947.0 |
7 | TraesCS2D01G112700 | chr2A | 97.689 | 779 | 18 | 0 | 5414 | 6192 | 63357420 | 63356642 | 0.000000e+00 | 1339.0 |
8 | TraesCS2D01G112700 | chr2A | 89.481 | 770 | 30 | 18 | 2160 | 2898 | 63362465 | 63361716 | 0.000000e+00 | 926.0 |
9 | TraesCS2D01G112700 | chr2A | 83.968 | 761 | 77 | 22 | 1086 | 1836 | 628726118 | 628725393 | 0.000000e+00 | 688.0 |
10 | TraesCS2D01G112700 | chr2A | 84.211 | 722 | 70 | 25 | 1127 | 1836 | 610180518 | 610179829 | 0.000000e+00 | 662.0 |
11 | TraesCS2D01G112700 | chr2A | 94.340 | 212 | 12 | 0 | 4 | 215 | 63364265 | 63364054 | 5.990000e-85 | 326.0 |
12 | TraesCS2D01G112700 | chr2A | 92.793 | 222 | 16 | 0 | 5762 | 5983 | 614574654 | 614574875 | 7.740000e-84 | 322.0 |
13 | TraesCS2D01G112700 | chr2A | 86.447 | 273 | 29 | 6 | 5469 | 5737 | 614574402 | 614574670 | 6.070000e-75 | 292.0 |
14 | TraesCS2D01G112700 | chr2A | 93.923 | 181 | 11 | 0 | 5982 | 6162 | 614574957 | 614575137 | 2.200000e-69 | 274.0 |
15 | TraesCS2D01G112700 | chr2A | 91.667 | 168 | 11 | 3 | 1885 | 2050 | 63362646 | 63362480 | 4.830000e-56 | 230.0 |
16 | TraesCS2D01G112700 | chr2A | 100.000 | 30 | 0 | 0 | 6163 | 6192 | 614575572 | 614575601 | 8.670000e-04 | 56.5 |
17 | TraesCS2D01G112700 | chr2A | 100.000 | 28 | 0 | 0 | 3014 | 3041 | 16611943 | 16611970 | 1.100000e-02 | 52.8 |
18 | TraesCS2D01G112700 | chr2A | 100.000 | 28 | 0 | 0 | 3014 | 3041 | 16625686 | 16625713 | 1.100000e-02 | 52.8 |
19 | TraesCS2D01G112700 | chr2B | 90.416 | 2786 | 157 | 62 | 1877 | 4606 | 97955910 | 97953179 | 0.000000e+00 | 3565.0 |
20 | TraesCS2D01G112700 | chr2B | 88.513 | 1419 | 70 | 30 | 647 | 2035 | 97957247 | 97955892 | 0.000000e+00 | 1631.0 |
21 | TraesCS2D01G112700 | chr2B | 96.816 | 534 | 14 | 2 | 5414 | 5945 | 97950746 | 97950214 | 0.000000e+00 | 889.0 |
22 | TraesCS2D01G112700 | chr2B | 90.755 | 530 | 17 | 11 | 4652 | 5171 | 97953187 | 97952680 | 0.000000e+00 | 678.0 |
23 | TraesCS2D01G112700 | chr2B | 98.268 | 231 | 4 | 0 | 5962 | 6192 | 97950129 | 97949899 | 7.470000e-109 | 405.0 |
24 | TraesCS2D01G112700 | chr2B | 93.204 | 206 | 13 | 1 | 5988 | 6192 | 552425807 | 552426012 | 1.010000e-77 | 302.0 |
25 | TraesCS2D01G112700 | chr2B | 92.357 | 157 | 12 | 0 | 3 | 159 | 97958800 | 97958644 | 2.250000e-54 | 224.0 |
26 | TraesCS2D01G112700 | chr2B | 93.750 | 144 | 9 | 0 | 1892 | 2035 | 97955965 | 97955822 | 3.760000e-52 | 217.0 |
27 | TraesCS2D01G112700 | chr2B | 96.667 | 120 | 3 | 1 | 5205 | 5324 | 97952679 | 97952561 | 1.360000e-46 | 198.0 |
28 | TraesCS2D01G112700 | chr2B | 100.000 | 34 | 0 | 0 | 5323 | 5356 | 97952343 | 97952310 | 5.180000e-06 | 63.9 |
29 | TraesCS2D01G112700 | chr7A | 83.871 | 775 | 69 | 31 | 1086 | 1836 | 471564528 | 471565270 | 0.000000e+00 | 688.0 |
30 | TraesCS2D01G112700 | chr6A | 84.605 | 721 | 68 | 23 | 1128 | 1836 | 17964081 | 17964770 | 0.000000e+00 | 676.0 |
31 | TraesCS2D01G112700 | chr6A | 85.009 | 527 | 48 | 13 | 1319 | 1836 | 554798270 | 554798774 | 1.990000e-139 | 507.0 |
32 | TraesCS2D01G112700 | chr6A | 79.681 | 251 | 26 | 17 | 1086 | 1321 | 554794659 | 554794899 | 2.310000e-34 | 158.0 |
33 | TraesCS2D01G112700 | chr6A | 93.182 | 44 | 2 | 1 | 5526 | 5569 | 609026027 | 609026069 | 5.180000e-06 | 63.9 |
34 | TraesCS2D01G112700 | chr4A | 83.549 | 772 | 72 | 29 | 1086 | 1836 | 625650533 | 625649796 | 0.000000e+00 | 671.0 |
35 | TraesCS2D01G112700 | chr4A | 80.952 | 777 | 78 | 28 | 1086 | 1836 | 395049319 | 395048587 | 9.070000e-153 | 551.0 |
36 | TraesCS2D01G112700 | chr4A | 97.222 | 36 | 1 | 0 | 5359 | 5394 | 688324487 | 688324522 | 1.860000e-05 | 62.1 |
37 | TraesCS2D01G112700 | chr7B | 94.158 | 291 | 13 | 4 | 251 | 538 | 697030748 | 697030459 | 2.050000e-119 | 440.0 |
38 | TraesCS2D01G112700 | chr6D | 91.582 | 297 | 23 | 2 | 248 | 542 | 327021863 | 327022159 | 5.780000e-110 | 409.0 |
39 | TraesCS2D01G112700 | chr3D | 91.667 | 288 | 22 | 2 | 253 | 538 | 255424391 | 255424678 | 1.250000e-106 | 398.0 |
40 | TraesCS2D01G112700 | chr3B | 91.667 | 288 | 21 | 3 | 253 | 538 | 377115119 | 377115405 | 4.500000e-106 | 396.0 |
41 | TraesCS2D01G112700 | chr3B | 85.994 | 357 | 36 | 13 | 204 | 551 | 39465201 | 39464850 | 2.730000e-98 | 370.0 |
42 | TraesCS2D01G112700 | chr3A | 91.349 | 289 | 22 | 3 | 253 | 538 | 319962311 | 319962599 | 5.820000e-105 | 392.0 |
43 | TraesCS2D01G112700 | chr1A | 91.034 | 290 | 24 | 2 | 254 | 541 | 478212079 | 478211790 | 2.090000e-104 | 390.0 |
44 | TraesCS2D01G112700 | chr5D | 88.415 | 328 | 29 | 9 | 221 | 540 | 132472957 | 132472631 | 2.710000e-103 | 387.0 |
45 | TraesCS2D01G112700 | chr5D | 92.453 | 53 | 4 | 0 | 5359 | 5411 | 529823925 | 529823977 | 6.660000e-10 | 76.8 |
46 | TraesCS2D01G112700 | chrUn | 92.157 | 51 | 4 | 0 | 5359 | 5409 | 29750339 | 29750389 | 8.610000e-09 | 73.1 |
47 | TraesCS2D01G112700 | chr1B | 90.566 | 53 | 5 | 0 | 5359 | 5411 | 658448357 | 658448409 | 3.100000e-08 | 71.3 |
48 | TraesCS2D01G112700 | chr1B | 91.489 | 47 | 4 | 0 | 5359 | 5405 | 610016126 | 610016172 | 1.440000e-06 | 65.8 |
49 | TraesCS2D01G112700 | chr4D | 95.122 | 41 | 2 | 0 | 5371 | 5411 | 13329923 | 13329963 | 1.440000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G112700 | chr2D | 62400642 | 62406833 | 6191 | True | 11435.000000 | 11435 | 100.000000 | 1 | 6192 | 1 | chr2D.!!$R1 | 6191 |
1 | TraesCS2D01G112700 | chr2D | 473089796 | 473090525 | 729 | False | 568.000000 | 712 | 93.686000 | 5423 | 6192 | 2 | chr2D.!!$F3 | 769 |
2 | TraesCS2D01G112700 | chr2A | 63356642 | 63364265 | 7623 | True | 1442.666667 | 3888 | 93.123833 | 4 | 6192 | 6 | chr2A.!!$R3 | 6188 |
3 | TraesCS2D01G112700 | chr2A | 628725393 | 628726118 | 725 | True | 688.000000 | 688 | 83.968000 | 1086 | 1836 | 1 | chr2A.!!$R2 | 750 |
4 | TraesCS2D01G112700 | chr2A | 610179829 | 610180518 | 689 | True | 662.000000 | 662 | 84.211000 | 1127 | 1836 | 1 | chr2A.!!$R1 | 709 |
5 | TraesCS2D01G112700 | chr2A | 614574402 | 614575601 | 1199 | False | 236.125000 | 322 | 93.290750 | 5469 | 6192 | 4 | chr2A.!!$F3 | 723 |
6 | TraesCS2D01G112700 | chr2B | 97949899 | 97958800 | 8901 | True | 874.544444 | 3565 | 94.171333 | 3 | 6192 | 9 | chr2B.!!$R1 | 6189 |
7 | TraesCS2D01G112700 | chr7A | 471564528 | 471565270 | 742 | False | 688.000000 | 688 | 83.871000 | 1086 | 1836 | 1 | chr7A.!!$F1 | 750 |
8 | TraesCS2D01G112700 | chr6A | 17964081 | 17964770 | 689 | False | 676.000000 | 676 | 84.605000 | 1128 | 1836 | 1 | chr6A.!!$F1 | 708 |
9 | TraesCS2D01G112700 | chr6A | 554794659 | 554798774 | 4115 | False | 332.500000 | 507 | 82.345000 | 1086 | 1836 | 2 | chr6A.!!$F3 | 750 |
10 | TraesCS2D01G112700 | chr4A | 625649796 | 625650533 | 737 | True | 671.000000 | 671 | 83.549000 | 1086 | 1836 | 1 | chr4A.!!$R2 | 750 |
11 | TraesCS2D01G112700 | chr4A | 395048587 | 395049319 | 732 | True | 551.000000 | 551 | 80.952000 | 1086 | 1836 | 1 | chr4A.!!$R1 | 750 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
536 | 777 | 0.316937 | AACGCACGTGCATTGTTCAG | 60.317 | 50.000 | 37.03 | 21.56 | 42.21 | 3.02 | F |
1560 | 6222 | 0.250166 | AGGTTAGTGTTGGCACCGAC | 60.250 | 55.000 | 0.00 | 0.00 | 46.35 | 4.79 | F |
1881 | 6570 | 1.795768 | ATTACACCGATGCGCATAGG | 58.204 | 50.000 | 38.08 | 38.08 | 39.19 | 2.57 | F |
2240 | 7071 | 2.407340 | TGGGGCAGGGTAATTTGTTT | 57.593 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 | F |
3842 | 8804 | 1.279846 | TGAGATGTGCATGCCTCTTGA | 59.720 | 47.619 | 16.68 | 3.40 | 0.00 | 3.02 | F |
4060 | 9022 | 0.388659 | ATCAGATGCTCACTCGCCTC | 59.611 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2209 | 7040 | 0.179113 | CTGCCCCAAAACACACACAC | 60.179 | 55.0 | 0.00 | 0.00 | 0.00 | 3.82 | R |
2453 | 7302 | 1.247567 | CAAATGCTTCCCGTCCAAGT | 58.752 | 50.0 | 0.00 | 0.00 | 0.00 | 3.16 | R |
2818 | 7696 | 1.549203 | GATGGCAAACAGACCACCAT | 58.451 | 50.0 | 0.00 | 0.00 | 43.72 | 3.55 | R |
4045 | 9007 | 0.809241 | CCTTGAGGCGAGTGAGCATC | 60.809 | 60.0 | 0.00 | 0.00 | 46.74 | 3.91 | R |
4929 | 9893 | 0.179070 | GCCTCCGGAACTCCTCATTC | 60.179 | 60.0 | 5.23 | 0.00 | 0.00 | 2.67 | R |
5664 | 13530 | 0.443869 | GTAATGTGCTGCAGTCACGG | 59.556 | 55.0 | 25.65 | 1.04 | 37.26 | 4.94 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 4.811557 | GCACCCGAATTAGAGATATATGCC | 59.188 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
63 | 64 | 3.004734 | ACTTTGGCTCTTCAAAATGGTCG | 59.995 | 43.478 | 0.00 | 0.00 | 36.37 | 4.79 |
71 | 72 | 4.714632 | TCTTCAAAATGGTCGAACCTTCT | 58.285 | 39.130 | 0.00 | 0.00 | 39.58 | 2.85 |
93 | 94 | 2.083774 | GTCTGGTGCAATCGGATTTCA | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
94 | 95 | 2.083774 | TCTGGTGCAATCGGATTTCAC | 58.916 | 47.619 | 20.55 | 20.55 | 0.00 | 3.18 |
96 | 97 | 2.083774 | TGGTGCAATCGGATTTCACTC | 58.916 | 47.619 | 25.22 | 18.11 | 0.00 | 3.51 |
151 | 152 | 4.885426 | ATCACCGCATGATCACCC | 57.115 | 55.556 | 0.00 | 0.00 | 45.52 | 4.61 |
240 | 481 | 9.991906 | TCTTTATCTCTACTTCTCTAGCTCTAC | 57.008 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
241 | 482 | 9.998106 | CTTTATCTCTACTTCTCTAGCTCTACT | 57.002 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
243 | 484 | 9.991906 | TTATCTCTACTTCTCTAGCTCTACTTC | 57.008 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
244 | 485 | 7.670605 | TCTCTACTTCTCTAGCTCTACTTCT | 57.329 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
245 | 486 | 7.723324 | TCTCTACTTCTCTAGCTCTACTTCTC | 58.277 | 42.308 | 0.00 | 0.00 | 0.00 | 2.87 |
246 | 487 | 7.563924 | TCTCTACTTCTCTAGCTCTACTTCTCT | 59.436 | 40.741 | 0.00 | 0.00 | 0.00 | 3.10 |
247 | 488 | 8.771521 | TCTACTTCTCTAGCTCTACTTCTCTA | 57.228 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
248 | 489 | 9.375974 | TCTACTTCTCTAGCTCTACTTCTCTAT | 57.624 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
249 | 490 | 9.640963 | CTACTTCTCTAGCTCTACTTCTCTATC | 57.359 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
250 | 491 | 8.263854 | ACTTCTCTAGCTCTACTTCTCTATCT | 57.736 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
251 | 492 | 8.368668 | ACTTCTCTAGCTCTACTTCTCTATCTC | 58.631 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
252 | 493 | 8.492415 | TTCTCTAGCTCTACTTCTCTATCTCT | 57.508 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
253 | 494 | 9.596308 | TTCTCTAGCTCTACTTCTCTATCTCTA | 57.404 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
254 | 495 | 9.769677 | TCTCTAGCTCTACTTCTCTATCTCTAT | 57.230 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
256 | 497 | 9.769677 | TCTAGCTCTACTTCTCTATCTCTATCT | 57.230 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
258 | 499 | 8.671987 | AGCTCTACTTCTCTATCTCTATCTCT | 57.328 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
259 | 500 | 9.769677 | AGCTCTACTTCTCTATCTCTATCTCTA | 57.230 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
260 | 501 | 9.804758 | GCTCTACTTCTCTATCTCTATCTCTAC | 57.195 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
293 | 534 | 2.786777 | ACGTAAGGTTCCCATTTCACC | 58.213 | 47.619 | 0.00 | 0.00 | 46.39 | 4.02 |
294 | 535 | 2.374170 | ACGTAAGGTTCCCATTTCACCT | 59.626 | 45.455 | 0.00 | 0.00 | 43.17 | 4.00 |
296 | 537 | 3.824443 | CGTAAGGTTCCCATTTCACCTTT | 59.176 | 43.478 | 8.08 | 0.00 | 46.85 | 3.11 |
297 | 538 | 4.279922 | CGTAAGGTTCCCATTTCACCTTTT | 59.720 | 41.667 | 8.08 | 0.00 | 46.85 | 2.27 |
298 | 539 | 5.221362 | CGTAAGGTTCCCATTTCACCTTTTT | 60.221 | 40.000 | 8.08 | 0.00 | 46.85 | 1.94 |
314 | 555 | 2.668144 | TTTTTCCACCATCCCTTCGT | 57.332 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
315 | 556 | 2.194201 | TTTTCCACCATCCCTTCGTC | 57.806 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
316 | 557 | 0.326927 | TTTCCACCATCCCTTCGTCC | 59.673 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
317 | 558 | 0.838554 | TTCCACCATCCCTTCGTCCA | 60.839 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
318 | 559 | 0.838554 | TCCACCATCCCTTCGTCCAA | 60.839 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
319 | 560 | 0.676782 | CCACCATCCCTTCGTCCAAC | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
320 | 561 | 0.676782 | CACCATCCCTTCGTCCAACC | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
321 | 562 | 0.840722 | ACCATCCCTTCGTCCAACCT | 60.841 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
322 | 563 | 0.328258 | CCATCCCTTCGTCCAACCTT | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
323 | 564 | 1.679032 | CCATCCCTTCGTCCAACCTTC | 60.679 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
324 | 565 | 0.618981 | ATCCCTTCGTCCAACCTTCC | 59.381 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
325 | 566 | 0.765135 | TCCCTTCGTCCAACCTTCCA | 60.765 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
326 | 567 | 0.328258 | CCCTTCGTCCAACCTTCCAT | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
327 | 568 | 1.453155 | CCTTCGTCCAACCTTCCATG | 58.547 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
328 | 569 | 1.271379 | CCTTCGTCCAACCTTCCATGT | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
329 | 570 | 2.027561 | CCTTCGTCCAACCTTCCATGTA | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
330 | 571 | 3.370527 | CCTTCGTCCAACCTTCCATGTAT | 60.371 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
331 | 572 | 4.141801 | CCTTCGTCCAACCTTCCATGTATA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 1.47 |
332 | 573 | 5.454755 | CCTTCGTCCAACCTTCCATGTATAT | 60.455 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
333 | 574 | 4.956085 | TCGTCCAACCTTCCATGTATATG | 58.044 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
334 | 575 | 4.651962 | TCGTCCAACCTTCCATGTATATGA | 59.348 | 41.667 | 0.25 | 0.00 | 36.36 | 2.15 |
335 | 576 | 5.306937 | TCGTCCAACCTTCCATGTATATGAT | 59.693 | 40.000 | 0.25 | 0.00 | 36.36 | 2.45 |
336 | 577 | 6.495526 | TCGTCCAACCTTCCATGTATATGATA | 59.504 | 38.462 | 0.25 | 0.00 | 36.36 | 2.15 |
337 | 578 | 7.015779 | TCGTCCAACCTTCCATGTATATGATAA | 59.984 | 37.037 | 0.25 | 0.00 | 36.36 | 1.75 |
338 | 579 | 7.824289 | CGTCCAACCTTCCATGTATATGATAAT | 59.176 | 37.037 | 0.25 | 0.00 | 36.36 | 1.28 |
339 | 580 | 9.167311 | GTCCAACCTTCCATGTATATGATAATC | 57.833 | 37.037 | 0.25 | 0.00 | 36.36 | 1.75 |
340 | 581 | 8.889445 | TCCAACCTTCCATGTATATGATAATCA | 58.111 | 33.333 | 0.25 | 0.00 | 36.36 | 2.57 |
341 | 582 | 9.519191 | CCAACCTTCCATGTATATGATAATCAA | 57.481 | 33.333 | 0.25 | 0.00 | 36.36 | 2.57 |
369 | 610 | 9.687210 | CACCTTAATTTACTTACCTTTTGAACC | 57.313 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
370 | 611 | 9.423964 | ACCTTAATTTACTTACCTTTTGAACCA | 57.576 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
375 | 616 | 9.772973 | AATTTACTTACCTTTTGAACCAATTCC | 57.227 | 29.630 | 0.00 | 0.00 | 33.49 | 3.01 |
376 | 617 | 7.899648 | TTACTTACCTTTTGAACCAATTCCA | 57.100 | 32.000 | 0.00 | 0.00 | 33.49 | 3.53 |
377 | 618 | 6.156748 | ACTTACCTTTTGAACCAATTCCAC | 57.843 | 37.500 | 0.00 | 0.00 | 33.49 | 4.02 |
378 | 619 | 5.897250 | ACTTACCTTTTGAACCAATTCCACT | 59.103 | 36.000 | 0.00 | 0.00 | 33.49 | 4.00 |
379 | 620 | 6.382859 | ACTTACCTTTTGAACCAATTCCACTT | 59.617 | 34.615 | 0.00 | 0.00 | 33.49 | 3.16 |
380 | 621 | 5.692115 | ACCTTTTGAACCAATTCCACTTT | 57.308 | 34.783 | 0.00 | 0.00 | 33.49 | 2.66 |
381 | 622 | 6.800072 | ACCTTTTGAACCAATTCCACTTTA | 57.200 | 33.333 | 0.00 | 0.00 | 33.49 | 1.85 |
382 | 623 | 7.189079 | ACCTTTTGAACCAATTCCACTTTAA | 57.811 | 32.000 | 0.00 | 0.00 | 33.49 | 1.52 |
383 | 624 | 7.801104 | ACCTTTTGAACCAATTCCACTTTAAT | 58.199 | 30.769 | 0.00 | 0.00 | 33.49 | 1.40 |
384 | 625 | 8.271458 | ACCTTTTGAACCAATTCCACTTTAATT | 58.729 | 29.630 | 0.00 | 0.00 | 33.49 | 1.40 |
385 | 626 | 9.119418 | CCTTTTGAACCAATTCCACTTTAATTT | 57.881 | 29.630 | 0.00 | 0.00 | 33.49 | 1.82 |
388 | 629 | 8.804688 | TTGAACCAATTCCACTTTAATTTACG | 57.195 | 30.769 | 0.00 | 0.00 | 33.49 | 3.18 |
389 | 630 | 7.942990 | TGAACCAATTCCACTTTAATTTACGT | 58.057 | 30.769 | 0.00 | 0.00 | 33.49 | 3.57 |
390 | 631 | 9.064706 | TGAACCAATTCCACTTTAATTTACGTA | 57.935 | 29.630 | 0.00 | 0.00 | 33.49 | 3.57 |
393 | 634 | 9.233649 | ACCAATTCCACTTTAATTTACGTATCA | 57.766 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
435 | 676 | 6.683974 | AAGGTAATTCATGGTCAGAATTCG | 57.316 | 37.500 | 4.60 | 0.00 | 42.82 | 3.34 |
436 | 677 | 5.989477 | AGGTAATTCATGGTCAGAATTCGA | 58.011 | 37.500 | 4.60 | 0.00 | 42.82 | 3.71 |
437 | 678 | 6.595682 | AGGTAATTCATGGTCAGAATTCGAT | 58.404 | 36.000 | 4.60 | 0.00 | 42.82 | 3.59 |
438 | 679 | 6.484643 | AGGTAATTCATGGTCAGAATTCGATG | 59.515 | 38.462 | 4.60 | 0.00 | 42.82 | 3.84 |
439 | 680 | 6.483307 | GGTAATTCATGGTCAGAATTCGATGA | 59.517 | 38.462 | 4.60 | 0.00 | 42.82 | 2.92 |
440 | 681 | 7.012327 | GGTAATTCATGGTCAGAATTCGATGAA | 59.988 | 37.037 | 15.67 | 15.67 | 42.82 | 2.57 |
441 | 682 | 5.801350 | TTCATGGTCAGAATTCGATGAAC | 57.199 | 39.130 | 5.92 | 5.92 | 35.22 | 3.18 |
442 | 683 | 4.831107 | TCATGGTCAGAATTCGATGAACA | 58.169 | 39.130 | 15.46 | 15.46 | 46.51 | 3.18 |
447 | 688 | 7.864108 | TGGTCAGAATTCGATGAACATTTAT | 57.136 | 32.000 | 10.52 | 0.00 | 38.20 | 1.40 |
448 | 689 | 8.279970 | TGGTCAGAATTCGATGAACATTTATT | 57.720 | 30.769 | 10.52 | 0.00 | 38.20 | 1.40 |
449 | 690 | 8.739039 | TGGTCAGAATTCGATGAACATTTATTT | 58.261 | 29.630 | 10.52 | 0.00 | 38.20 | 1.40 |
459 | 700 | 9.381027 | TCGATGAACATTTATTTATTCAATCGC | 57.619 | 29.630 | 0.00 | 0.00 | 34.88 | 4.58 |
460 | 701 | 9.168353 | CGATGAACATTTATTTATTCAATCGCA | 57.832 | 29.630 | 0.00 | 0.00 | 34.88 | 5.10 |
471 | 712 | 7.928908 | TTTATTCAATCGCATTATTCTTGGC | 57.071 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
472 | 713 | 4.979943 | TTCAATCGCATTATTCTTGGCA | 57.020 | 36.364 | 0.00 | 0.00 | 0.00 | 4.92 |
473 | 714 | 4.979943 | TCAATCGCATTATTCTTGGCAA | 57.020 | 36.364 | 0.00 | 0.00 | 0.00 | 4.52 |
474 | 715 | 4.923893 | TCAATCGCATTATTCTTGGCAAG | 58.076 | 39.130 | 21.17 | 21.17 | 0.00 | 4.01 |
475 | 716 | 4.398988 | TCAATCGCATTATTCTTGGCAAGT | 59.601 | 37.500 | 25.39 | 11.09 | 0.00 | 3.16 |
476 | 717 | 5.588246 | TCAATCGCATTATTCTTGGCAAGTA | 59.412 | 36.000 | 25.39 | 17.65 | 0.00 | 2.24 |
477 | 718 | 6.094742 | TCAATCGCATTATTCTTGGCAAGTAA | 59.905 | 34.615 | 25.39 | 17.75 | 0.00 | 2.24 |
478 | 719 | 5.888691 | TCGCATTATTCTTGGCAAGTAAA | 57.111 | 34.783 | 25.39 | 17.66 | 0.00 | 2.01 |
479 | 720 | 6.449635 | TCGCATTATTCTTGGCAAGTAAAT | 57.550 | 33.333 | 25.39 | 19.98 | 0.00 | 1.40 |
480 | 721 | 6.494842 | TCGCATTATTCTTGGCAAGTAAATC | 58.505 | 36.000 | 25.39 | 12.49 | 0.00 | 2.17 |
481 | 722 | 6.094742 | TCGCATTATTCTTGGCAAGTAAATCA | 59.905 | 34.615 | 25.39 | 11.61 | 0.00 | 2.57 |
482 | 723 | 6.197096 | CGCATTATTCTTGGCAAGTAAATCAC | 59.803 | 38.462 | 25.39 | 15.10 | 0.00 | 3.06 |
483 | 724 | 7.035004 | GCATTATTCTTGGCAAGTAAATCACA | 58.965 | 34.615 | 25.39 | 8.36 | 0.00 | 3.58 |
484 | 725 | 7.545265 | GCATTATTCTTGGCAAGTAAATCACAA | 59.455 | 33.333 | 25.39 | 11.13 | 0.00 | 3.33 |
485 | 726 | 9.421806 | CATTATTCTTGGCAAGTAAATCACAAA | 57.578 | 29.630 | 25.39 | 10.44 | 0.00 | 2.83 |
486 | 727 | 8.810652 | TTATTCTTGGCAAGTAAATCACAAAC | 57.189 | 30.769 | 25.39 | 0.00 | 0.00 | 2.93 |
487 | 728 | 6.463995 | TTCTTGGCAAGTAAATCACAAACT | 57.536 | 33.333 | 25.39 | 0.00 | 0.00 | 2.66 |
488 | 729 | 7.575414 | TTCTTGGCAAGTAAATCACAAACTA | 57.425 | 32.000 | 25.39 | 0.00 | 0.00 | 2.24 |
489 | 730 | 7.575414 | TCTTGGCAAGTAAATCACAAACTAA | 57.425 | 32.000 | 25.39 | 0.00 | 0.00 | 2.24 |
490 | 731 | 7.422399 | TCTTGGCAAGTAAATCACAAACTAAC | 58.578 | 34.615 | 25.39 | 0.00 | 0.00 | 2.34 |
491 | 732 | 6.701145 | TGGCAAGTAAATCACAAACTAACA | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
492 | 733 | 7.283625 | TGGCAAGTAAATCACAAACTAACAT | 57.716 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
493 | 734 | 8.397575 | TGGCAAGTAAATCACAAACTAACATA | 57.602 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
494 | 735 | 8.293867 | TGGCAAGTAAATCACAAACTAACATAC | 58.706 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
495 | 736 | 8.512138 | GGCAAGTAAATCACAAACTAACATACT | 58.488 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
528 | 769 | 2.621542 | CGTTGTAACGCACGTGCA | 59.378 | 55.556 | 37.03 | 18.05 | 46.06 | 4.57 |
529 | 770 | 1.203065 | CGTTGTAACGCACGTGCAT | 59.797 | 52.632 | 37.03 | 27.35 | 46.06 | 3.96 |
530 | 771 | 0.383737 | CGTTGTAACGCACGTGCATT | 60.384 | 50.000 | 37.03 | 31.72 | 46.06 | 3.56 |
531 | 772 | 1.041726 | GTTGTAACGCACGTGCATTG | 58.958 | 50.000 | 37.03 | 24.38 | 42.21 | 2.82 |
532 | 773 | 0.658368 | TTGTAACGCACGTGCATTGT | 59.342 | 45.000 | 37.03 | 25.05 | 42.21 | 2.71 |
533 | 774 | 0.658368 | TGTAACGCACGTGCATTGTT | 59.342 | 45.000 | 37.03 | 31.54 | 42.21 | 2.83 |
534 | 775 | 1.314581 | GTAACGCACGTGCATTGTTC | 58.685 | 50.000 | 37.03 | 20.09 | 42.21 | 3.18 |
535 | 776 | 0.938008 | TAACGCACGTGCATTGTTCA | 59.062 | 45.000 | 37.03 | 13.37 | 42.21 | 3.18 |
536 | 777 | 0.316937 | AACGCACGTGCATTGTTCAG | 60.317 | 50.000 | 37.03 | 21.56 | 42.21 | 3.02 |
537 | 778 | 1.279539 | CGCACGTGCATTGTTCAGT | 59.720 | 52.632 | 37.03 | 0.00 | 42.21 | 3.41 |
604 | 845 | 1.605232 | CCCCGTGACTTGTTTGGTTAC | 59.395 | 52.381 | 0.00 | 0.00 | 0.00 | 2.50 |
610 | 851 | 3.625764 | GTGACTTGTTTGGTTACAGCAGA | 59.374 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
617 | 858 | 3.838244 | TTGGTTACAGCAGAGACTTGT | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
660 | 1893 | 9.780186 | AATAGCAGATTATAACCCTCAAACTAC | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
665 | 1905 | 7.438459 | CAGATTATAACCCTCAAACTACGAAGG | 59.562 | 40.741 | 0.00 | 0.00 | 0.00 | 3.46 |
693 | 1933 | 5.717078 | AAAACTCCTTTATTCCCCGAAAC | 57.283 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
726 | 1969 | 5.086104 | TGCTTCATAAGGTAGGAGTGAAC | 57.914 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
815 | 2058 | 5.907197 | TCTTCGAGCAGTTAAAAGTTCAG | 57.093 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
816 | 2059 | 5.597806 | TCTTCGAGCAGTTAAAAGTTCAGA | 58.402 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
844 | 2088 | 1.843992 | AAACAAGAACTACGCGTCGT | 58.156 | 45.000 | 18.63 | 14.34 | 44.35 | 4.34 |
937 | 2181 | 3.367395 | GGAAACTCCAAAATACTGCAGCC | 60.367 | 47.826 | 15.27 | 0.00 | 36.28 | 4.85 |
939 | 2183 | 2.440409 | ACTCCAAAATACTGCAGCCTG | 58.560 | 47.619 | 15.27 | 3.92 | 0.00 | 4.85 |
943 | 2187 | 1.089920 | AAAATACTGCAGCCTGAGCG | 58.910 | 50.000 | 15.27 | 0.00 | 46.67 | 5.03 |
1046 | 2291 | 1.191489 | GCAGCCTCCTCCTATCTCCC | 61.191 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1163 | 2437 | 2.939022 | GTGTTCGTGGCTGCTGTC | 59.061 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
1308 | 2591 | 1.912371 | GCTGGTGCTACTTTCGTGCC | 61.912 | 60.000 | 0.00 | 0.00 | 36.03 | 5.01 |
1409 | 6069 | 6.936900 | TGAGCCTAATTGAAATAGTAGATGGC | 59.063 | 38.462 | 0.00 | 0.00 | 36.11 | 4.40 |
1446 | 6107 | 1.403780 | CCGTTTGGTTCCTACGAGGAG | 60.404 | 57.143 | 14.77 | 0.00 | 46.73 | 3.69 |
1461 | 6122 | 2.739932 | CGAGGAGTTAATCAGCTGGTGG | 60.740 | 54.545 | 15.13 | 0.00 | 0.00 | 4.61 |
1560 | 6222 | 0.250166 | AGGTTAGTGTTGGCACCGAC | 60.250 | 55.000 | 0.00 | 0.00 | 46.35 | 4.79 |
1595 | 6262 | 3.374745 | CAAAGATTAATGACATGGCCGC | 58.625 | 45.455 | 0.00 | 0.00 | 0.00 | 6.53 |
1732 | 6402 | 2.237392 | CCTTAGCCAACTCTGGTAGCTT | 59.763 | 50.000 | 0.00 | 0.00 | 45.53 | 3.74 |
1875 | 6564 | 5.706916 | ACCTTACTATATTACACCGATGCG | 58.293 | 41.667 | 0.00 | 0.00 | 0.00 | 4.73 |
1881 | 6570 | 1.795768 | ATTACACCGATGCGCATAGG | 58.204 | 50.000 | 38.08 | 38.08 | 39.19 | 2.57 |
2056 | 6886 | 3.795488 | GCCGCAAGTTCTAATAATTGGGC | 60.795 | 47.826 | 0.00 | 0.00 | 35.10 | 5.36 |
2098 | 6929 | 2.562298 | GAGCCCCAATTGTGACAATTCA | 59.438 | 45.455 | 19.77 | 0.00 | 0.00 | 2.57 |
2101 | 6932 | 3.509575 | GCCCCAATTGTGACAATTCAGTA | 59.490 | 43.478 | 19.77 | 0.00 | 30.10 | 2.74 |
2102 | 6933 | 4.160252 | GCCCCAATTGTGACAATTCAGTAT | 59.840 | 41.667 | 19.77 | 0.00 | 30.10 | 2.12 |
2103 | 6934 | 5.359576 | GCCCCAATTGTGACAATTCAGTATA | 59.640 | 40.000 | 19.77 | 0.00 | 30.10 | 1.47 |
2125 | 6956 | 4.490743 | ACCGAGGTTTTGTTTTTCTGTTG | 58.509 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
2139 | 6970 | 7.556275 | TGTTTTTCTGTTGAGAGTTTACCATCT | 59.444 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2209 | 7040 | 5.231702 | TGGAATGAATTTGATGTTGCTGTG | 58.768 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
2240 | 7071 | 2.407340 | TGGGGCAGGGTAATTTGTTT | 57.593 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2315 | 7164 | 5.706916 | CTGATTCCTGATGTTTTGAACAGG | 58.293 | 41.667 | 0.00 | 0.00 | 45.95 | 4.00 |
2369 | 7218 | 3.202818 | TGGGTGGAAGCAACTATGATGAT | 59.797 | 43.478 | 0.00 | 0.00 | 34.77 | 2.45 |
2576 | 7426 | 6.346096 | TGTTATTGATACACCAGGTAAGAGC | 58.654 | 40.000 | 0.00 | 0.00 | 35.14 | 4.09 |
2597 | 7447 | 6.986231 | AGAGCGTTTTGGATCTTTTGAATTTT | 59.014 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2650 | 7505 | 9.961265 | TTTTGAACCTACGATGTCTATATAGTG | 57.039 | 33.333 | 9.58 | 0.00 | 0.00 | 2.74 |
2882 | 7834 | 9.430399 | AATTTCCTGAGTAATGATCCATGATTT | 57.570 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
2883 | 7835 | 8.455903 | TTTCCTGAGTAATGATCCATGATTTC | 57.544 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2884 | 7836 | 6.537355 | TCCTGAGTAATGATCCATGATTTCC | 58.463 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2885 | 7837 | 6.101588 | TCCTGAGTAATGATCCATGATTTCCA | 59.898 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
2886 | 7838 | 6.206243 | CCTGAGTAATGATCCATGATTTCCAC | 59.794 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
2887 | 7839 | 6.903516 | TGAGTAATGATCCATGATTTCCACT | 58.096 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2888 | 7840 | 8.033178 | TGAGTAATGATCCATGATTTCCACTA | 57.967 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
2889 | 7841 | 8.663167 | TGAGTAATGATCCATGATTTCCACTAT | 58.337 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2890 | 7842 | 9.512588 | GAGTAATGATCCATGATTTCCACTATT | 57.487 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2891 | 7843 | 9.872684 | AGTAATGATCCATGATTTCCACTATTT | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2950 | 7904 | 6.756542 | GGTTGTTGTTTATTCTAATCCCATGC | 59.243 | 38.462 | 0.00 | 0.00 | 0.00 | 4.06 |
2998 | 7954 | 2.700371 | TGAGACTCCGCCACATGATTAT | 59.300 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
3133 | 8092 | 9.643693 | AATGTATTGCTCCTTATTTTGACTTTG | 57.356 | 29.630 | 0.00 | 0.00 | 0.00 | 2.77 |
3173 | 8132 | 3.130340 | GCGTTGGATGTTGTATTGGGAAT | 59.870 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3320 | 8279 | 5.741982 | GTGAAAGCAGCTTCGTAAAGAAAAA | 59.258 | 36.000 | 8.48 | 0.00 | 38.57 | 1.94 |
3377 | 8336 | 9.615295 | GCTAATCGTGTTTTTAGGAAAATGTTA | 57.385 | 29.630 | 0.00 | 0.00 | 37.12 | 2.41 |
3415 | 8374 | 3.009033 | TCACCAATGTGGAAACTAGGGAG | 59.991 | 47.826 | 0.18 | 0.00 | 40.96 | 4.30 |
3437 | 8396 | 5.506708 | AGCCGGTAAATTTATCTTCCTTGT | 58.493 | 37.500 | 1.90 | 0.00 | 0.00 | 3.16 |
3443 | 8402 | 7.273381 | CGGTAAATTTATCTTCCTTGTTGCAAG | 59.727 | 37.037 | 0.00 | 2.16 | 0.00 | 4.01 |
3510 | 8471 | 9.675464 | ATGTTTTGCTAATCATCCATTTCATTT | 57.325 | 25.926 | 0.00 | 0.00 | 0.00 | 2.32 |
3540 | 8501 | 6.710744 | GGATAGGATTATTTGACATGACCGTT | 59.289 | 38.462 | 0.00 | 0.00 | 0.00 | 4.44 |
3732 | 8693 | 7.159372 | TGGTCTTAGTTTTCACTTATGGAGAC | 58.841 | 38.462 | 0.00 | 0.00 | 34.06 | 3.36 |
3835 | 8797 | 2.602878 | CCAAACTTGAGATGTGCATGC | 58.397 | 47.619 | 11.82 | 11.82 | 0.00 | 4.06 |
3840 | 8802 | 2.290768 | ACTTGAGATGTGCATGCCTCTT | 60.291 | 45.455 | 16.68 | 6.65 | 0.00 | 2.85 |
3841 | 8803 | 1.746470 | TGAGATGTGCATGCCTCTTG | 58.254 | 50.000 | 16.68 | 0.00 | 0.00 | 3.02 |
3842 | 8804 | 1.279846 | TGAGATGTGCATGCCTCTTGA | 59.720 | 47.619 | 16.68 | 3.40 | 0.00 | 3.02 |
3861 | 8823 | 7.118535 | CCTCTTGATGAATCATATGAGCTTGAG | 59.881 | 40.741 | 11.78 | 9.51 | 36.56 | 3.02 |
3862 | 8824 | 7.732996 | TCTTGATGAATCATATGAGCTTGAGA | 58.267 | 34.615 | 11.78 | 5.88 | 36.56 | 3.27 |
3863 | 8825 | 8.376270 | TCTTGATGAATCATATGAGCTTGAGAT | 58.624 | 33.333 | 11.78 | 0.00 | 36.56 | 2.75 |
4045 | 9007 | 4.884164 | GGAGGAAACCCATTTACAGATCAG | 59.116 | 45.833 | 0.00 | 0.00 | 30.03 | 2.90 |
4060 | 9022 | 0.388659 | ATCAGATGCTCACTCGCCTC | 59.611 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4363 | 9325 | 9.868160 | CCAGAAACTTATCCCCTTCTTTATAAT | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
4546 | 9510 | 2.406401 | GCGATGCACACAGCCATC | 59.594 | 61.111 | 0.00 | 0.00 | 44.83 | 3.51 |
4623 | 9587 | 9.227777 | GTTGTTGGAAAAAGTACTAGGACATAT | 57.772 | 33.333 | 8.10 | 0.00 | 0.00 | 1.78 |
4629 | 9593 | 9.968870 | GGAAAAAGTACTAGGACATATCTGTAG | 57.031 | 37.037 | 8.10 | 0.00 | 35.14 | 2.74 |
4666 | 9630 | 5.860941 | TCCAGCTTTGTTTGGACATTTTA | 57.139 | 34.783 | 0.00 | 0.00 | 38.53 | 1.52 |
4708 | 9672 | 5.241662 | CCAGAACTATCTAAATAGCTGCCC | 58.758 | 45.833 | 0.00 | 0.00 | 38.81 | 5.36 |
4710 | 9674 | 6.471146 | CAGAACTATCTAAATAGCTGCCCAT | 58.529 | 40.000 | 0.00 | 0.00 | 38.81 | 4.00 |
4809 | 9773 | 1.294659 | CGGTGGAGAAGCTGCAAGTC | 61.295 | 60.000 | 1.02 | 0.00 | 32.80 | 3.01 |
4929 | 9893 | 0.395036 | TCGAGAAGGCTCAGGAGGAG | 60.395 | 60.000 | 0.00 | 0.00 | 46.93 | 3.69 |
5078 | 10048 | 5.890110 | CAGATATACTGTACTTGGTTGCG | 57.110 | 43.478 | 0.00 | 0.00 | 41.30 | 4.85 |
5119 | 10092 | 0.038166 | GTTGAATGCCTGGGGAGTCA | 59.962 | 55.000 | 7.16 | 7.16 | 38.65 | 3.41 |
5120 | 10093 | 0.776810 | TTGAATGCCTGGGGAGTCAA | 59.223 | 50.000 | 17.32 | 17.32 | 45.24 | 3.18 |
5121 | 10094 | 0.776810 | TGAATGCCTGGGGAGTCAAA | 59.223 | 50.000 | 8.69 | 0.00 | 37.59 | 2.69 |
5289 | 10264 | 3.742013 | GCCAATGGGTTTATGCTTGGATG | 60.742 | 47.826 | 0.00 | 0.00 | 38.92 | 3.51 |
5356 | 10550 | 1.513158 | CCTCGTACTGGTGCCAGAG | 59.487 | 63.158 | 23.55 | 13.96 | 46.30 | 3.35 |
5373 | 10859 | 3.611113 | CCAGAGTAATCAAACCACGTACG | 59.389 | 47.826 | 15.01 | 15.01 | 0.00 | 3.67 |
5374 | 10860 | 3.060363 | CAGAGTAATCAAACCACGTACGC | 59.940 | 47.826 | 16.72 | 0.00 | 0.00 | 4.42 |
5375 | 10861 | 2.988493 | GAGTAATCAAACCACGTACGCA | 59.012 | 45.455 | 16.72 | 0.00 | 0.00 | 5.24 |
5376 | 10862 | 2.991190 | AGTAATCAAACCACGTACGCAG | 59.009 | 45.455 | 16.72 | 9.51 | 0.00 | 5.18 |
5377 | 10863 | 1.153353 | AATCAAACCACGTACGCAGG | 58.847 | 50.000 | 21.68 | 21.68 | 0.00 | 4.85 |
5383 | 10869 | 3.172575 | CACGTACGCAGGAGCACG | 61.173 | 66.667 | 16.72 | 0.00 | 43.37 | 5.34 |
5388 | 10874 | 3.076258 | TACGCAGGAGCACGGATGG | 62.076 | 63.158 | 0.00 | 0.00 | 42.27 | 3.51 |
5569 | 13432 | 2.861462 | TCCTTTGTTTCAAACGGCAG | 57.139 | 45.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5617 | 13483 | 6.254281 | TCGATTCTCCAAAATTCCTTTGAC | 57.746 | 37.500 | 0.00 | 0.00 | 46.35 | 3.18 |
5620 | 13486 | 6.749118 | CGATTCTCCAAAATTCCTTTGACATC | 59.251 | 38.462 | 0.00 | 0.00 | 46.35 | 3.06 |
5642 | 13508 | 3.506810 | CCGCTGTTTCAACTTTCAAACA | 58.493 | 40.909 | 0.00 | 0.00 | 39.61 | 2.83 |
5664 | 13530 | 1.531578 | GGTCTGAGAACGGAAACAAGC | 59.468 | 52.381 | 0.00 | 0.00 | 32.84 | 4.01 |
6057 | 14074 | 2.123726 | CCTGCAATGGGTAGGGCC | 60.124 | 66.667 | 0.00 | 0.00 | 44.95 | 5.80 |
6097 | 14115 | 0.984995 | AGCTCTAAGGGCTCGGTTTT | 59.015 | 50.000 | 0.00 | 0.00 | 34.70 | 2.43 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 5.395768 | GCATATATCTCTAATTCGGGTGCCT | 60.396 | 44.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1 | 2 | 4.811557 | GCATATATCTCTAATTCGGGTGCC | 59.188 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
25 | 26 | 6.243900 | AGCCAAAGTCATATCTCCCATTATG | 58.756 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
63 | 64 | 3.402628 | TTGCACCAGACTAGAAGGTTC | 57.597 | 47.619 | 0.00 | 0.00 | 32.15 | 3.62 |
71 | 72 | 3.055458 | TGAAATCCGATTGCACCAGACTA | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
151 | 152 | 8.817100 | CATGAACATCTTTGATTTCATTGATGG | 58.183 | 33.333 | 18.71 | 8.35 | 36.72 | 3.51 |
215 | 456 | 9.998106 | AGTAGAGCTAGAGAAGTAGAGATAAAG | 57.002 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
217 | 458 | 9.991906 | GAAGTAGAGCTAGAGAAGTAGAGATAA | 57.008 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
218 | 459 | 9.375974 | AGAAGTAGAGCTAGAGAAGTAGAGATA | 57.624 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
219 | 460 | 8.263854 | AGAAGTAGAGCTAGAGAAGTAGAGAT | 57.736 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
220 | 461 | 7.563924 | AGAGAAGTAGAGCTAGAGAAGTAGAGA | 59.436 | 40.741 | 0.00 | 0.00 | 0.00 | 3.10 |
221 | 462 | 7.727181 | AGAGAAGTAGAGCTAGAGAAGTAGAG | 58.273 | 42.308 | 0.00 | 0.00 | 0.00 | 2.43 |
222 | 463 | 7.670605 | AGAGAAGTAGAGCTAGAGAAGTAGA | 57.329 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
223 | 464 | 9.640963 | GATAGAGAAGTAGAGCTAGAGAAGTAG | 57.359 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
224 | 465 | 9.375974 | AGATAGAGAAGTAGAGCTAGAGAAGTA | 57.624 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
225 | 466 | 8.263854 | AGATAGAGAAGTAGAGCTAGAGAAGT | 57.736 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
226 | 467 | 8.589338 | AGAGATAGAGAAGTAGAGCTAGAGAAG | 58.411 | 40.741 | 0.00 | 0.00 | 0.00 | 2.85 |
227 | 468 | 8.492415 | AGAGATAGAGAAGTAGAGCTAGAGAA | 57.508 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
228 | 469 | 9.769677 | ATAGAGATAGAGAAGTAGAGCTAGAGA | 57.230 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
230 | 471 | 9.769677 | AGATAGAGATAGAGAAGTAGAGCTAGA | 57.230 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
232 | 473 | 9.769677 | AGAGATAGAGATAGAGAAGTAGAGCTA | 57.230 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
233 | 474 | 8.671987 | AGAGATAGAGATAGAGAAGTAGAGCT | 57.328 | 38.462 | 0.00 | 0.00 | 0.00 | 4.09 |
234 | 475 | 9.804758 | GTAGAGATAGAGATAGAGAAGTAGAGC | 57.195 | 40.741 | 0.00 | 0.00 | 0.00 | 4.09 |
255 | 496 | 9.905171 | ACCTTACGTTCTTTTTAAGTAGTAGAG | 57.095 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
295 | 536 | 2.510613 | GACGAAGGGATGGTGGAAAAA | 58.489 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
296 | 537 | 1.271707 | GGACGAAGGGATGGTGGAAAA | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
297 | 538 | 0.326927 | GGACGAAGGGATGGTGGAAA | 59.673 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
298 | 539 | 0.838554 | TGGACGAAGGGATGGTGGAA | 60.839 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
299 | 540 | 0.838554 | TTGGACGAAGGGATGGTGGA | 60.839 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
300 | 541 | 0.676782 | GTTGGACGAAGGGATGGTGG | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
301 | 542 | 0.676782 | GGTTGGACGAAGGGATGGTG | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
302 | 543 | 0.840722 | AGGTTGGACGAAGGGATGGT | 60.841 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
303 | 544 | 0.328258 | AAGGTTGGACGAAGGGATGG | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
304 | 545 | 1.679032 | GGAAGGTTGGACGAAGGGATG | 60.679 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
305 | 546 | 0.618981 | GGAAGGTTGGACGAAGGGAT | 59.381 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
306 | 547 | 0.765135 | TGGAAGGTTGGACGAAGGGA | 60.765 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
307 | 548 | 0.328258 | ATGGAAGGTTGGACGAAGGG | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
308 | 549 | 1.271379 | ACATGGAAGGTTGGACGAAGG | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
309 | 550 | 2.185004 | ACATGGAAGGTTGGACGAAG | 57.815 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
310 | 551 | 3.992943 | ATACATGGAAGGTTGGACGAA | 57.007 | 42.857 | 0.00 | 0.00 | 28.09 | 3.85 |
311 | 552 | 4.651962 | TCATATACATGGAAGGTTGGACGA | 59.348 | 41.667 | 0.00 | 0.00 | 32.61 | 4.20 |
312 | 553 | 4.956085 | TCATATACATGGAAGGTTGGACG | 58.044 | 43.478 | 0.00 | 0.00 | 32.61 | 4.79 |
313 | 554 | 9.167311 | GATTATCATATACATGGAAGGTTGGAC | 57.833 | 37.037 | 0.00 | 0.00 | 32.61 | 4.02 |
314 | 555 | 8.889445 | TGATTATCATATACATGGAAGGTTGGA | 58.111 | 33.333 | 0.00 | 0.00 | 32.61 | 3.53 |
315 | 556 | 9.519191 | TTGATTATCATATACATGGAAGGTTGG | 57.481 | 33.333 | 0.00 | 0.00 | 32.61 | 3.77 |
343 | 584 | 9.687210 | GGTTCAAAAGGTAAGTAAATTAAGGTG | 57.313 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
344 | 585 | 9.423964 | TGGTTCAAAAGGTAAGTAAATTAAGGT | 57.576 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
349 | 590 | 9.772973 | GGAATTGGTTCAAAAGGTAAGTAAATT | 57.227 | 29.630 | 0.00 | 0.00 | 36.01 | 1.82 |
350 | 591 | 8.929487 | TGGAATTGGTTCAAAAGGTAAGTAAAT | 58.071 | 29.630 | 0.00 | 0.00 | 36.01 | 1.40 |
351 | 592 | 8.198778 | GTGGAATTGGTTCAAAAGGTAAGTAAA | 58.801 | 33.333 | 0.00 | 0.00 | 36.01 | 2.01 |
352 | 593 | 7.562088 | AGTGGAATTGGTTCAAAAGGTAAGTAA | 59.438 | 33.333 | 0.00 | 0.00 | 36.01 | 2.24 |
353 | 594 | 7.064229 | AGTGGAATTGGTTCAAAAGGTAAGTA | 58.936 | 34.615 | 0.00 | 0.00 | 36.01 | 2.24 |
354 | 595 | 5.897250 | AGTGGAATTGGTTCAAAAGGTAAGT | 59.103 | 36.000 | 0.00 | 0.00 | 36.01 | 2.24 |
355 | 596 | 6.405278 | AGTGGAATTGGTTCAAAAGGTAAG | 57.595 | 37.500 | 0.00 | 0.00 | 36.01 | 2.34 |
356 | 597 | 6.800072 | AAGTGGAATTGGTTCAAAAGGTAA | 57.200 | 33.333 | 0.00 | 0.00 | 36.01 | 2.85 |
357 | 598 | 6.800072 | AAAGTGGAATTGGTTCAAAAGGTA | 57.200 | 33.333 | 0.00 | 0.00 | 36.01 | 3.08 |
358 | 599 | 5.692115 | AAAGTGGAATTGGTTCAAAAGGT | 57.308 | 34.783 | 0.00 | 0.00 | 36.01 | 3.50 |
359 | 600 | 8.675705 | AATTAAAGTGGAATTGGTTCAAAAGG | 57.324 | 30.769 | 0.00 | 0.00 | 36.01 | 3.11 |
362 | 603 | 9.250624 | CGTAAATTAAAGTGGAATTGGTTCAAA | 57.749 | 29.630 | 0.00 | 0.00 | 36.01 | 2.69 |
363 | 604 | 8.414778 | ACGTAAATTAAAGTGGAATTGGTTCAA | 58.585 | 29.630 | 0.00 | 0.00 | 36.01 | 2.69 |
364 | 605 | 7.942990 | ACGTAAATTAAAGTGGAATTGGTTCA | 58.057 | 30.769 | 0.00 | 0.00 | 36.01 | 3.18 |
367 | 608 | 9.233649 | TGATACGTAAATTAAAGTGGAATTGGT | 57.766 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
409 | 650 | 9.489084 | CGAATTCTGACCATGAATTACCTTATA | 57.511 | 33.333 | 3.52 | 0.00 | 42.17 | 0.98 |
410 | 651 | 8.210946 | TCGAATTCTGACCATGAATTACCTTAT | 58.789 | 33.333 | 3.52 | 0.00 | 42.17 | 1.73 |
411 | 652 | 7.561251 | TCGAATTCTGACCATGAATTACCTTA | 58.439 | 34.615 | 3.52 | 0.00 | 42.17 | 2.69 |
412 | 653 | 6.414732 | TCGAATTCTGACCATGAATTACCTT | 58.585 | 36.000 | 3.52 | 0.00 | 42.17 | 3.50 |
413 | 654 | 5.989477 | TCGAATTCTGACCATGAATTACCT | 58.011 | 37.500 | 3.52 | 0.00 | 42.17 | 3.08 |
414 | 655 | 6.483307 | TCATCGAATTCTGACCATGAATTACC | 59.517 | 38.462 | 3.52 | 0.00 | 42.17 | 2.85 |
415 | 656 | 7.482654 | TCATCGAATTCTGACCATGAATTAC | 57.517 | 36.000 | 3.52 | 0.00 | 42.17 | 1.89 |
416 | 657 | 7.552330 | TGTTCATCGAATTCTGACCATGAATTA | 59.448 | 33.333 | 3.52 | 2.60 | 42.17 | 1.40 |
417 | 658 | 6.375174 | TGTTCATCGAATTCTGACCATGAATT | 59.625 | 34.615 | 3.52 | 0.00 | 44.01 | 2.17 |
418 | 659 | 5.882000 | TGTTCATCGAATTCTGACCATGAAT | 59.118 | 36.000 | 3.52 | 0.00 | 33.89 | 2.57 |
419 | 660 | 5.244755 | TGTTCATCGAATTCTGACCATGAA | 58.755 | 37.500 | 3.52 | 7.15 | 0.00 | 2.57 |
420 | 661 | 4.831107 | TGTTCATCGAATTCTGACCATGA | 58.169 | 39.130 | 3.52 | 1.84 | 0.00 | 3.07 |
421 | 662 | 5.746307 | ATGTTCATCGAATTCTGACCATG | 57.254 | 39.130 | 6.86 | 1.82 | 0.00 | 3.66 |
422 | 663 | 6.764308 | AAATGTTCATCGAATTCTGACCAT | 57.236 | 33.333 | 3.52 | 3.17 | 0.00 | 3.55 |
423 | 664 | 7.864108 | ATAAATGTTCATCGAATTCTGACCA | 57.136 | 32.000 | 3.52 | 0.78 | 0.00 | 4.02 |
433 | 674 | 9.381027 | GCGATTGAATAAATAAATGTTCATCGA | 57.619 | 29.630 | 15.72 | 0.00 | 35.79 | 3.59 |
434 | 675 | 9.168353 | TGCGATTGAATAAATAAATGTTCATCG | 57.832 | 29.630 | 0.00 | 0.00 | 36.23 | 3.84 |
445 | 686 | 9.624697 | GCCAAGAATAATGCGATTGAATAAATA | 57.375 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
446 | 687 | 8.143193 | TGCCAAGAATAATGCGATTGAATAAAT | 58.857 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
447 | 688 | 7.487484 | TGCCAAGAATAATGCGATTGAATAAA | 58.513 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
448 | 689 | 7.036996 | TGCCAAGAATAATGCGATTGAATAA | 57.963 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
449 | 690 | 6.631971 | TGCCAAGAATAATGCGATTGAATA | 57.368 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
450 | 691 | 5.518848 | TGCCAAGAATAATGCGATTGAAT | 57.481 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
451 | 692 | 4.979943 | TGCCAAGAATAATGCGATTGAA | 57.020 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
452 | 693 | 4.398988 | ACTTGCCAAGAATAATGCGATTGA | 59.601 | 37.500 | 12.25 | 0.00 | 0.00 | 2.57 |
453 | 694 | 4.675510 | ACTTGCCAAGAATAATGCGATTG | 58.324 | 39.130 | 12.25 | 0.00 | 0.00 | 2.67 |
454 | 695 | 4.989279 | ACTTGCCAAGAATAATGCGATT | 57.011 | 36.364 | 12.25 | 0.00 | 0.00 | 3.34 |
455 | 696 | 6.449635 | TTTACTTGCCAAGAATAATGCGAT | 57.550 | 33.333 | 12.25 | 0.00 | 0.00 | 4.58 |
456 | 697 | 5.888691 | TTTACTTGCCAAGAATAATGCGA | 57.111 | 34.783 | 12.25 | 0.00 | 0.00 | 5.10 |
457 | 698 | 6.197096 | GTGATTTACTTGCCAAGAATAATGCG | 59.803 | 38.462 | 12.25 | 0.00 | 0.00 | 4.73 |
458 | 699 | 7.035004 | TGTGATTTACTTGCCAAGAATAATGC | 58.965 | 34.615 | 12.25 | 4.14 | 0.00 | 3.56 |
459 | 700 | 8.984891 | TTGTGATTTACTTGCCAAGAATAATG | 57.015 | 30.769 | 12.25 | 0.00 | 0.00 | 1.90 |
460 | 701 | 9.423061 | GTTTGTGATTTACTTGCCAAGAATAAT | 57.577 | 29.630 | 12.25 | 7.22 | 0.00 | 1.28 |
461 | 702 | 8.637986 | AGTTTGTGATTTACTTGCCAAGAATAA | 58.362 | 29.630 | 12.25 | 2.54 | 0.00 | 1.40 |
462 | 703 | 8.177119 | AGTTTGTGATTTACTTGCCAAGAATA | 57.823 | 30.769 | 12.25 | 0.00 | 0.00 | 1.75 |
463 | 704 | 7.054491 | AGTTTGTGATTTACTTGCCAAGAAT | 57.946 | 32.000 | 12.25 | 0.96 | 0.00 | 2.40 |
464 | 705 | 6.463995 | AGTTTGTGATTTACTTGCCAAGAA | 57.536 | 33.333 | 12.25 | 0.00 | 0.00 | 2.52 |
465 | 706 | 7.067615 | TGTTAGTTTGTGATTTACTTGCCAAGA | 59.932 | 33.333 | 12.25 | 0.00 | 0.00 | 3.02 |
466 | 707 | 7.199766 | TGTTAGTTTGTGATTTACTTGCCAAG | 58.800 | 34.615 | 2.11 | 2.11 | 0.00 | 3.61 |
467 | 708 | 7.101652 | TGTTAGTTTGTGATTTACTTGCCAA | 57.898 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
468 | 709 | 6.701145 | TGTTAGTTTGTGATTTACTTGCCA | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
469 | 710 | 8.512138 | AGTATGTTAGTTTGTGATTTACTTGCC | 58.488 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
518 | 759 | 1.279539 | CTGAACAATGCACGTGCGT | 59.720 | 52.632 | 33.22 | 31.21 | 45.83 | 5.24 |
519 | 760 | 0.510790 | TACTGAACAATGCACGTGCG | 59.489 | 50.000 | 33.22 | 22.30 | 45.83 | 5.34 |
520 | 761 | 1.798223 | TCTACTGAACAATGCACGTGC | 59.202 | 47.619 | 33.11 | 33.11 | 42.50 | 5.34 |
521 | 762 | 4.668576 | ATTCTACTGAACAATGCACGTG | 57.331 | 40.909 | 12.28 | 12.28 | 34.71 | 4.49 |
522 | 763 | 9.411801 | CTATATATTCTACTGAACAATGCACGT | 57.588 | 33.333 | 0.00 | 0.00 | 34.71 | 4.49 |
523 | 764 | 9.626045 | TCTATATATTCTACTGAACAATGCACG | 57.374 | 33.333 | 0.00 | 0.00 | 34.71 | 5.34 |
556 | 797 | 1.666553 | CCGTACGAGCAAGCCAACA | 60.667 | 57.895 | 18.76 | 0.00 | 0.00 | 3.33 |
557 | 798 | 3.023591 | GCCGTACGAGCAAGCCAAC | 62.024 | 63.158 | 18.76 | 0.00 | 0.00 | 3.77 |
588 | 829 | 3.625764 | TCTGCTGTAACCAAACAAGTCAC | 59.374 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
604 | 845 | 4.694037 | TGATGAATGAACAAGTCTCTGCTG | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 4.41 |
610 | 851 | 8.853077 | TTACAAGATGATGAATGAACAAGTCT | 57.147 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
617 | 858 | 9.788889 | ATCTGCTATTACAAGATGATGAATGAA | 57.211 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
693 | 1933 | 4.082787 | ACCTTATGAAGCAAATCGTGTTGG | 60.083 | 41.667 | 3.62 | 0.00 | 0.00 | 3.77 |
726 | 1969 | 5.351465 | ACTGATTTACAATAGCAACAGACCG | 59.649 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
853 | 2097 | 9.947669 | GACTACAAAATATTTCTAGTAGCTCGA | 57.052 | 33.333 | 22.41 | 0.00 | 33.96 | 4.04 |
854 | 2098 | 9.731819 | TGACTACAAAATATTTCTAGTAGCTCG | 57.268 | 33.333 | 22.41 | 10.32 | 33.96 | 5.03 |
868 | 2112 | 4.142227 | GCCCGTCTCTCTGACTACAAAATA | 60.142 | 45.833 | 0.00 | 0.00 | 43.25 | 1.40 |
869 | 2113 | 3.368531 | GCCCGTCTCTCTGACTACAAAAT | 60.369 | 47.826 | 0.00 | 0.00 | 43.25 | 1.82 |
870 | 2114 | 2.029290 | GCCCGTCTCTCTGACTACAAAA | 60.029 | 50.000 | 0.00 | 0.00 | 43.25 | 2.44 |
873 | 2117 | 0.680280 | GGCCCGTCTCTCTGACTACA | 60.680 | 60.000 | 0.00 | 0.00 | 43.25 | 2.74 |
1308 | 2591 | 1.064296 | CCTACGACTAGCACAGCCG | 59.936 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
1369 | 6025 | 2.435805 | AGGCTCATCGATTCCTGCTTAA | 59.564 | 45.455 | 9.20 | 0.00 | 0.00 | 1.85 |
1376 | 6033 | 6.566197 | ATTTCAATTAGGCTCATCGATTCC | 57.434 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
1409 | 6069 | 2.328099 | GGACGTGGCTTGCTCCAAG | 61.328 | 63.158 | 0.00 | 0.74 | 43.57 | 3.61 |
1421 | 6082 | 1.142474 | GTAGGAACCAAACGGACGTG | 58.858 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1446 | 6107 | 1.305219 | TGCGCCACCAGCTGATTAAC | 61.305 | 55.000 | 17.39 | 0.20 | 40.39 | 2.01 |
1461 | 6122 | 1.060937 | CCGATGCTAAACACTGCGC | 59.939 | 57.895 | 0.00 | 0.00 | 0.00 | 6.09 |
1539 | 6201 | 1.234615 | CGGTGCCAACACTAACCTGG | 61.235 | 60.000 | 0.00 | 0.00 | 46.57 | 4.45 |
1560 | 6222 | 4.376340 | AATCTTTGCGCCTATTTTCCTG | 57.624 | 40.909 | 4.18 | 0.00 | 0.00 | 3.86 |
1595 | 6262 | 0.948678 | CACCAAACTGGGTAACACCG | 59.051 | 55.000 | 0.00 | 0.00 | 43.37 | 4.94 |
1732 | 6402 | 3.586470 | TTCCTTTTCCAGTACCAAGCA | 57.414 | 42.857 | 0.00 | 0.00 | 0.00 | 3.91 |
1875 | 6564 | 3.688673 | GCTCCAGAGAAATATGCCTATGC | 59.311 | 47.826 | 0.00 | 0.00 | 38.26 | 3.14 |
1881 | 6570 | 2.947127 | AGGGCTCCAGAGAAATATGC | 57.053 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2056 | 6886 | 3.455910 | TCTCTGGAATAGACACAATGGGG | 59.544 | 47.826 | 0.00 | 0.00 | 0.00 | 4.96 |
2098 | 6929 | 6.769341 | ACAGAAAAACAAAACCTCGGTATACT | 59.231 | 34.615 | 2.25 | 0.00 | 0.00 | 2.12 |
2101 | 6932 | 6.095720 | TCAACAGAAAAACAAAACCTCGGTAT | 59.904 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
2102 | 6933 | 5.415077 | TCAACAGAAAAACAAAACCTCGGTA | 59.585 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2103 | 6934 | 4.218852 | TCAACAGAAAAACAAAACCTCGGT | 59.781 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
2209 | 7040 | 0.179113 | CTGCCCCAAAACACACACAC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2240 | 7071 | 7.934665 | TCCTAAATTGCTATATGCGACCTTTTA | 59.065 | 33.333 | 0.00 | 0.00 | 46.63 | 1.52 |
2315 | 7164 | 4.603231 | TGGTAACGAACACTCACAAAAC | 57.397 | 40.909 | 0.00 | 0.00 | 42.51 | 2.43 |
2453 | 7302 | 1.247567 | CAAATGCTTCCCGTCCAAGT | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2620 | 7475 | 9.832445 | ATATAGACATCGTAGGTTCAAAACATT | 57.168 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2669 | 7546 | 7.539034 | ACAACTTAGCATAACCAGGAAAAAT | 57.461 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2764 | 7642 | 5.997129 | TGTTAAGAATGAGTGCAACAGATGA | 59.003 | 36.000 | 0.00 | 0.00 | 41.43 | 2.92 |
2771 | 7649 | 8.539770 | TTTTGTTTTGTTAAGAATGAGTGCAA | 57.460 | 26.923 | 0.00 | 0.00 | 0.00 | 4.08 |
2818 | 7696 | 1.549203 | GATGGCAAACAGACCACCAT | 58.451 | 50.000 | 0.00 | 0.00 | 43.72 | 3.55 |
2890 | 7842 | 9.194271 | GCAAAACCATAAAATACGACCTAAAAA | 57.806 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2891 | 7843 | 8.578151 | AGCAAAACCATAAAATACGACCTAAAA | 58.422 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
2892 | 7844 | 8.113173 | AGCAAAACCATAAAATACGACCTAAA | 57.887 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
2893 | 7845 | 7.690952 | AGCAAAACCATAAAATACGACCTAA | 57.309 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2894 | 7846 | 8.967664 | ATAGCAAAACCATAAAATACGACCTA | 57.032 | 30.769 | 0.00 | 0.00 | 0.00 | 3.08 |
2895 | 7847 | 7.875327 | ATAGCAAAACCATAAAATACGACCT | 57.125 | 32.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2896 | 7848 | 8.920509 | AAATAGCAAAACCATAAAATACGACC | 57.079 | 30.769 | 0.00 | 0.00 | 0.00 | 4.79 |
2903 | 7855 | 9.482627 | CAACCTGTAAATAGCAAAACCATAAAA | 57.517 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
2904 | 7856 | 8.643324 | ACAACCTGTAAATAGCAAAACCATAAA | 58.357 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2905 | 7857 | 8.184304 | ACAACCTGTAAATAGCAAAACCATAA | 57.816 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
2906 | 7858 | 7.768807 | ACAACCTGTAAATAGCAAAACCATA | 57.231 | 32.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2907 | 7859 | 6.664428 | ACAACCTGTAAATAGCAAAACCAT | 57.336 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2908 | 7860 | 6.127310 | ACAACAACCTGTAAATAGCAAAACCA | 60.127 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
2909 | 7861 | 6.277605 | ACAACAACCTGTAAATAGCAAAACC | 58.722 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2910 | 7862 | 7.764695 | AACAACAACCTGTAAATAGCAAAAC | 57.235 | 32.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2913 | 7865 | 9.685828 | GAATAAACAACAACCTGTAAATAGCAA | 57.314 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2923 | 7875 | 7.461182 | TGGGATTAGAATAAACAACAACCTG | 57.539 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2950 | 7904 | 2.855209 | TCCATGGCCACAAAAATTGG | 57.145 | 45.000 | 8.16 | 10.81 | 37.17 | 3.16 |
3081 | 8040 | 8.175925 | TGTAATTCACAAAATGAGATTCACCA | 57.824 | 30.769 | 0.00 | 0.00 | 38.99 | 4.17 |
3110 | 8069 | 9.346725 | CTTCAAAGTCAAAATAAGGAGCAATAC | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
3133 | 8092 | 4.946784 | ACGCTCCAATTGTGATAACTTC | 57.053 | 40.909 | 4.43 | 0.00 | 0.00 | 3.01 |
3173 | 8132 | 2.355108 | GCTCTCCTACATTTCAGTGGCA | 60.355 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
3212 | 8171 | 7.980662 | ACAGCTGCAAAATATAAAACATGCATA | 59.019 | 29.630 | 15.27 | 0.00 | 42.25 | 3.14 |
3415 | 8374 | 5.830000 | ACAAGGAAGATAAATTTACCGGC | 57.170 | 39.130 | 0.00 | 0.00 | 0.00 | 6.13 |
3437 | 8396 | 2.073117 | TAACGCGATCAGTCTTGCAA | 57.927 | 45.000 | 15.93 | 0.00 | 0.00 | 4.08 |
3510 | 8471 | 9.778741 | GTCATGTCAAATAATCCTATCCAAGTA | 57.221 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
3540 | 8501 | 2.072487 | GCCAGCATCCTCAGGGGTA | 61.072 | 63.158 | 0.00 | 0.00 | 36.25 | 3.69 |
3835 | 8797 | 6.935208 | TCAAGCTCATATGATTCATCAAGAGG | 59.065 | 38.462 | 5.72 | 0.00 | 40.69 | 3.69 |
3840 | 8802 | 7.387948 | CACATCTCAAGCTCATATGATTCATCA | 59.612 | 37.037 | 5.72 | 0.00 | 41.70 | 3.07 |
3841 | 8803 | 7.624554 | GCACATCTCAAGCTCATATGATTCATC | 60.625 | 40.741 | 5.72 | 0.00 | 0.00 | 2.92 |
3842 | 8804 | 6.149640 | GCACATCTCAAGCTCATATGATTCAT | 59.850 | 38.462 | 5.72 | 4.28 | 0.00 | 2.57 |
3861 | 8823 | 9.787532 | ACATACAAATGTAACTATTTGCACATC | 57.212 | 29.630 | 10.23 | 0.00 | 44.66 | 3.06 |
3863 | 8825 | 9.619316 | GAACATACAAATGTAACTATTTGCACA | 57.381 | 29.630 | 10.23 | 0.00 | 45.79 | 4.57 |
4045 | 9007 | 0.809241 | CCTTGAGGCGAGTGAGCATC | 60.809 | 60.000 | 0.00 | 0.00 | 46.74 | 3.91 |
4117 | 9079 | 9.202273 | CCTACAAGATGAGATAAGCATAAGAAC | 57.798 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4546 | 9510 | 9.853177 | AATATCAACTTATGTAGAAAGGGAAGG | 57.147 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
4596 | 9560 | 6.416415 | TGTCCTAGTACTTTTTCCAACAACA | 58.584 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4623 | 9587 | 5.305902 | TGGATGTGTAAACAGAACCTACAGA | 59.694 | 40.000 | 7.83 | 0.00 | 33.97 | 3.41 |
4629 | 9593 | 3.412386 | AGCTGGATGTGTAAACAGAACC | 58.588 | 45.455 | 0.23 | 0.23 | 33.53 | 3.62 |
4666 | 9630 | 7.780271 | AGTTCTGGGAAAGTTAAAACAATCTCT | 59.220 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
4708 | 9672 | 6.424509 | ACTTGGAAACACATGCATGTAAAATG | 59.575 | 34.615 | 30.92 | 20.40 | 42.67 | 2.32 |
4710 | 9674 | 5.911752 | ACTTGGAAACACATGCATGTAAAA | 58.088 | 33.333 | 30.92 | 16.81 | 42.67 | 1.52 |
4891 | 9855 | 1.002868 | GCCTCTCCTTGAGCTTGCA | 60.003 | 57.895 | 0.00 | 0.00 | 41.35 | 4.08 |
4929 | 9893 | 0.179070 | GCCTCCGGAACTCCTCATTC | 60.179 | 60.000 | 5.23 | 0.00 | 0.00 | 2.67 |
4932 | 9896 | 1.984570 | CAGCCTCCGGAACTCCTCA | 60.985 | 63.158 | 5.23 | 0.00 | 0.00 | 3.86 |
5078 | 10048 | 6.297694 | ACTTCTACCAATATACGAGACGAC | 57.702 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
5156 | 10129 | 5.627367 | GTCGCAAGTGCTACTAATATGAGAG | 59.373 | 44.000 | 1.21 | 0.00 | 39.32 | 3.20 |
5289 | 10264 | 9.673454 | ATTAAAAACGATCAGACAAACTAAACC | 57.327 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
5317 | 10292 | 3.418995 | GGTTTCAAGGGAGAGTTAACCC | 58.581 | 50.000 | 0.88 | 0.00 | 45.88 | 4.11 |
5356 | 10550 | 2.093152 | CCTGCGTACGTGGTTTGATTAC | 59.907 | 50.000 | 17.90 | 0.00 | 0.00 | 1.89 |
5399 | 10885 | 1.589414 | ATTCTTACTGCCTGCTCCCT | 58.411 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5402 | 10888 | 3.198872 | GGTGTATTCTTACTGCCTGCTC | 58.801 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5411 | 10897 | 8.391106 | CAAATAGCAAGTCTGGTGTATTCTTAC | 58.609 | 37.037 | 0.00 | 0.00 | 34.40 | 2.34 |
5412 | 10898 | 7.552687 | CCAAATAGCAAGTCTGGTGTATTCTTA | 59.447 | 37.037 | 0.00 | 0.00 | 34.40 | 2.10 |
5583 | 13448 | 7.938140 | TTTTGGAGAATCGAATTCCTACATT | 57.062 | 32.000 | 12.59 | 0.00 | 40.13 | 2.71 |
5617 | 13483 | 2.293122 | TGAAAGTTGAAACAGCGGGATG | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
5620 | 13486 | 2.857748 | GTTTGAAAGTTGAAACAGCGGG | 59.142 | 45.455 | 1.85 | 0.00 | 34.94 | 6.13 |
5642 | 13508 | 1.420430 | TGTTTCCGTTCTCAGACCCT | 58.580 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
5664 | 13530 | 0.443869 | GTAATGTGCTGCAGTCACGG | 59.556 | 55.000 | 25.65 | 1.04 | 37.26 | 4.94 |
5804 | 13670 | 2.569404 | GTCCAGGGCCTAGATATTGGAG | 59.431 | 54.545 | 5.28 | 0.00 | 35.55 | 3.86 |
5863 | 13729 | 2.280628 | GGCCCTGAGTCAAGATAAACG | 58.719 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.