Multiple sequence alignment - TraesCS2D01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G111400 chr2D 100.000 6141 0 0 1 6141 61985479 61979339 0.000000e+00 11341.0
1 TraesCS2D01G111400 chr2B 90.448 2879 156 52 309 3150 97195552 97192756 0.000000e+00 3683.0
2 TraesCS2D01G111400 chr2B 86.576 1907 135 43 4319 6141 97191480 97189611 0.000000e+00 1991.0
3 TraesCS2D01G111400 chr2B 83.687 613 37 33 3666 4234 97192080 97191487 2.540000e-143 520.0
4 TraesCS2D01G111400 chr2B 86.797 462 34 17 3146 3603 97192679 97192241 1.990000e-134 490.0
5 TraesCS2D01G111400 chr2B 88.338 343 22 8 1 325 97195910 97195568 4.460000e-106 396.0
6 TraesCS2D01G111400 chr2A 88.184 2192 150 59 1013 3152 62303993 62301859 0.000000e+00 2512.0
7 TraesCS2D01G111400 chr2A 86.919 1376 68 44 4038 5358 62300691 62299373 0.000000e+00 1441.0
8 TraesCS2D01G111400 chr2A 93.256 430 23 2 5714 6141 62299034 62298609 4.040000e-176 628.0
9 TraesCS2D01G111400 chr2A 86.481 540 37 18 3146 3662 62301782 62301256 1.490000e-155 560.0
10 TraesCS2D01G111400 chr2A 86.849 365 18 11 3666 4008 62301161 62300805 1.250000e-101 381.0
11 TraesCS2D01G111400 chr2A 89.333 300 23 3 613 912 62304541 62304251 9.720000e-98 368.0
12 TraesCS2D01G111400 chr2A 78.977 352 23 22 9 332 62305027 62304699 6.280000e-45 193.0
13 TraesCS2D01G111400 chr2A 100.000 31 0 0 502 532 62304650 62304620 2.390000e-04 58.4
14 TraesCS2D01G111400 chr1A 85.563 284 41 0 4821 5104 403026218 403026501 1.290000e-76 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G111400 chr2D 61979339 61985479 6140 True 11341.000 11341 100.000000 1 6141 1 chr2D.!!$R1 6140
1 TraesCS2D01G111400 chr2B 97189611 97195910 6299 True 1416.000 3683 87.169200 1 6141 5 chr2B.!!$R1 6140
2 TraesCS2D01G111400 chr2A 62298609 62305027 6418 True 767.675 2512 88.749875 9 6141 8 chr2A.!!$R1 6132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 163 0.036164 ATAGCCTGCACGTTTCCACA 59.964 50.0 0.00 0.00 0.00 4.17 F
995 1126 0.103208 AGAAGTCCATCACGCGATCC 59.897 55.0 15.93 0.00 0.00 3.36 F
2324 2643 0.388134 GCAACTTCGTCGCTCAGGTA 60.388 55.0 0.00 0.00 0.00 3.08 F
3635 4082 0.034756 ACTGCTAACGGTGACATGCA 59.965 50.0 0.00 0.00 32.77 3.96 F
3965 4555 0.178533 TCCATGTGCTCGATCATGCA 59.821 50.0 15.30 5.63 39.74 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 2183 0.379669 CGATGGCAGCATTTCTGTCC 59.620 55.0 2.73 0.0 46.65 4.02 R
2384 2704 0.163146 GAAGTTACGTGGAAGCGTGC 59.837 55.0 0.00 0.0 45.33 5.34 R
4278 4997 0.038801 GCTGATGATCGATCGAGCCA 60.039 55.0 28.63 24.1 32.96 4.75 R
4810 5597 0.325933 CCTCAACCTGCACCATCAGA 59.674 55.0 0.00 0.0 36.19 3.27 R
5693 6558 0.112995 AACCAAATCTCCAGCAGGCA 59.887 50.0 0.00 0.0 33.74 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.186047 CAGCCCGCGTTCGTTAGG 61.186 66.667 4.92 0.00 0.00 2.69
100 111 4.227134 CCGCTAGCCAGCCGACAT 62.227 66.667 9.66 0.00 45.64 3.06
103 114 1.005630 GCTAGCCAGCCGACATAGG 60.006 63.158 2.29 0.00 42.37 2.57
123 134 0.731417 CCCACACGTAGTACGAGAGG 59.269 60.000 28.47 25.32 46.05 3.69
144 163 0.036164 ATAGCCTGCACGTTTCCACA 59.964 50.000 0.00 0.00 0.00 4.17
146 165 2.631428 CCTGCACGTTTCCACACG 59.369 61.111 0.00 0.00 46.04 4.49
152 171 1.525077 ACGTTTCCACACGGTGCAT 60.525 52.632 8.30 0.00 44.82 3.96
153 172 1.082169 CGTTTCCACACGGTGCATG 60.082 57.895 8.30 0.00 36.47 4.06
162 181 3.913573 CGGTGCATGCGACGCTAC 61.914 66.667 22.08 13.80 0.00 3.58
213 237 2.104170 TGACATGTGCACCGTATCCTA 58.896 47.619 15.69 0.00 0.00 2.94
234 260 2.583164 GCTACGACGCGGCCATTAC 61.583 63.158 12.47 0.00 0.00 1.89
280 306 1.458777 TGGTCGAGTGAACCTGGGT 60.459 57.895 0.00 0.00 0.00 4.51
287 325 0.320697 AGTGAACCTGGGTACGCTTC 59.679 55.000 11.59 7.37 0.00 3.86
352 422 0.511221 ACAACGCTGTTATCACACGC 59.489 50.000 0.00 0.00 33.40 5.34
355 425 2.020016 GCTGTTATCACACGCGCG 59.980 61.111 30.96 30.96 0.00 6.86
356 426 2.726691 GCTGTTATCACACGCGCGT 61.727 57.895 32.73 32.73 0.00 6.01
394 464 2.418083 CCTCCCCAAAGCGCCAATC 61.418 63.158 2.29 0.00 0.00 2.67
396 466 1.228706 TCCCCAAAGCGCCAATCAA 60.229 52.632 2.29 0.00 0.00 2.57
397 467 0.614415 TCCCCAAAGCGCCAATCAAT 60.614 50.000 2.29 0.00 0.00 2.57
398 468 0.179103 CCCCAAAGCGCCAATCAATC 60.179 55.000 2.29 0.00 0.00 2.67
399 469 0.179103 CCCAAAGCGCCAATCAATCC 60.179 55.000 2.29 0.00 0.00 3.01
427 497 3.726517 CACGCCAACGCCCAAGAG 61.727 66.667 0.00 0.00 45.53 2.85
428 498 4.250305 ACGCCAACGCCCAAGAGT 62.250 61.111 0.00 0.00 45.53 3.24
430 500 4.043200 GCCAACGCCCAAGAGTGC 62.043 66.667 0.00 0.00 0.00 4.40
438 508 1.086634 GCCCAAGAGTGCGAGCTAAG 61.087 60.000 0.00 0.00 0.00 2.18
439 509 1.086634 CCCAAGAGTGCGAGCTAAGC 61.087 60.000 6.70 6.70 0.00 3.09
440 510 0.390340 CCAAGAGTGCGAGCTAAGCA 60.390 55.000 11.78 11.78 42.99 3.91
446 516 2.827604 TGCGAGCTAAGCACAGAAC 58.172 52.632 11.78 0.00 40.01 3.01
447 517 0.318441 TGCGAGCTAAGCACAGAACT 59.682 50.000 11.78 0.00 40.01 3.01
448 518 1.270305 TGCGAGCTAAGCACAGAACTT 60.270 47.619 11.78 0.00 40.01 2.66
449 519 1.127582 GCGAGCTAAGCACAGAACTTG 59.872 52.381 8.60 0.00 34.19 3.16
450 520 1.728971 CGAGCTAAGCACAGAACTTGG 59.271 52.381 0.00 0.00 0.00 3.61
451 521 2.610479 CGAGCTAAGCACAGAACTTGGA 60.610 50.000 0.00 0.00 0.00 3.53
452 522 3.403038 GAGCTAAGCACAGAACTTGGAA 58.597 45.455 0.00 0.00 0.00 3.53
453 523 3.406764 AGCTAAGCACAGAACTTGGAAG 58.593 45.455 0.00 0.00 0.00 3.46
454 524 3.142174 GCTAAGCACAGAACTTGGAAGT 58.858 45.455 0.00 0.00 42.04 3.01
532 622 0.461516 TTCCGTGTGTGCGTTTACCA 60.462 50.000 0.00 0.00 0.00 3.25
533 623 0.249953 TCCGTGTGTGCGTTTACCAT 60.250 50.000 0.00 0.00 0.00 3.55
534 624 1.000618 TCCGTGTGTGCGTTTACCATA 59.999 47.619 0.00 0.00 0.00 2.74
535 625 1.127213 CCGTGTGTGCGTTTACCATAC 59.873 52.381 0.00 0.00 0.00 2.39
536 626 1.127213 CGTGTGTGCGTTTACCATACC 59.873 52.381 0.00 0.00 0.00 2.73
537 627 1.465777 GTGTGTGCGTTTACCATACCC 59.534 52.381 0.00 0.00 0.00 3.69
538 628 1.089112 GTGTGCGTTTACCATACCCC 58.911 55.000 0.00 0.00 0.00 4.95
539 629 0.691332 TGTGCGTTTACCATACCCCA 59.309 50.000 0.00 0.00 0.00 4.96
540 630 1.339247 TGTGCGTTTACCATACCCCAG 60.339 52.381 0.00 0.00 0.00 4.45
541 631 0.393267 TGCGTTTACCATACCCCAGC 60.393 55.000 0.00 0.00 0.00 4.85
542 632 0.393267 GCGTTTACCATACCCCAGCA 60.393 55.000 0.00 0.00 0.00 4.41
543 633 1.663695 CGTTTACCATACCCCAGCAG 58.336 55.000 0.00 0.00 0.00 4.24
544 634 1.065709 CGTTTACCATACCCCAGCAGT 60.066 52.381 0.00 0.00 0.00 4.40
545 635 2.365582 GTTTACCATACCCCAGCAGTG 58.634 52.381 0.00 0.00 0.00 3.66
546 636 0.254747 TTACCATACCCCAGCAGTGC 59.745 55.000 7.13 7.13 0.00 4.40
547 637 0.912006 TACCATACCCCAGCAGTGCA 60.912 55.000 19.20 0.00 0.00 4.57
548 638 1.750399 CCATACCCCAGCAGTGCAC 60.750 63.158 19.20 9.40 0.00 4.57
549 639 2.108514 CATACCCCAGCAGTGCACG 61.109 63.158 19.20 7.78 0.00 5.34
550 640 2.592993 ATACCCCAGCAGTGCACGT 61.593 57.895 19.20 9.54 0.00 4.49
551 641 1.261938 ATACCCCAGCAGTGCACGTA 61.262 55.000 19.20 11.42 0.00 3.57
552 642 1.473497 TACCCCAGCAGTGCACGTAA 61.473 55.000 19.20 0.00 0.00 3.18
553 643 2.325082 CCCCAGCAGTGCACGTAAC 61.325 63.158 19.20 2.15 0.00 2.50
554 644 2.667318 CCCAGCAGTGCACGTAACG 61.667 63.158 19.20 0.08 0.00 3.18
555 645 1.663388 CCAGCAGTGCACGTAACGA 60.663 57.895 19.20 0.00 0.00 3.85
556 646 1.487231 CAGCAGTGCACGTAACGAC 59.513 57.895 19.20 0.00 0.00 4.34
557 647 1.663702 AGCAGTGCACGTAACGACC 60.664 57.895 19.20 0.00 0.00 4.79
564 654 1.955157 CACGTAACGACCCGGCAAA 60.955 57.895 0.00 0.00 0.00 3.68
594 689 5.668558 TTCTCCTTTGTTTTTACTCGAGC 57.331 39.130 13.61 0.00 0.00 5.03
660 774 4.070716 GCCGATCCTTTCATCATGAGATT 58.929 43.478 0.09 0.00 30.20 2.40
748 863 2.043349 GGCAGGGCCGGGTAAATT 60.043 61.111 2.18 0.00 39.62 1.82
749 864 1.684391 GGCAGGGCCGGGTAAATTT 60.684 57.895 2.18 0.00 39.62 1.82
750 865 1.672854 GGCAGGGCCGGGTAAATTTC 61.673 60.000 2.18 0.00 39.62 2.17
921 1039 1.518572 AAATACGCGCCACTCCTCG 60.519 57.895 5.73 0.00 0.00 4.63
938 1056 3.706373 GCCCTCTTCTCCCGCACA 61.706 66.667 0.00 0.00 0.00 4.57
939 1057 2.266055 CCCTCTTCTCCCGCACAC 59.734 66.667 0.00 0.00 0.00 3.82
940 1058 2.266055 CCTCTTCTCCCGCACACC 59.734 66.667 0.00 0.00 0.00 4.16
941 1059 2.266055 CTCTTCTCCCGCACACCC 59.734 66.667 0.00 0.00 0.00 4.61
942 1060 3.316573 CTCTTCTCCCGCACACCCC 62.317 68.421 0.00 0.00 0.00 4.95
943 1061 4.410400 CTTCTCCCGCACACCCCC 62.410 72.222 0.00 0.00 0.00 5.40
987 1118 1.107114 GCCGAGAGAGAAGTCCATCA 58.893 55.000 0.00 0.00 0.00 3.07
995 1126 0.103208 AGAAGTCCATCACGCGATCC 59.897 55.000 15.93 0.00 0.00 3.36
1177 1458 3.068691 TCGCCACCCTCCTCTTCG 61.069 66.667 0.00 0.00 0.00 3.79
1266 1550 2.809601 GTGTCGCGGCAGTACCAG 60.810 66.667 16.68 0.00 39.03 4.00
1267 1551 3.299977 TGTCGCGGCAGTACCAGT 61.300 61.111 10.57 0.00 39.03 4.00
1268 1552 2.506438 GTCGCGGCAGTACCAGTC 60.506 66.667 5.47 0.00 39.03 3.51
1793 2091 5.456192 GGTACGTCATCACATCTTTTCTG 57.544 43.478 0.00 0.00 0.00 3.02
1794 2092 4.330074 GGTACGTCATCACATCTTTTCTGG 59.670 45.833 0.00 0.00 0.00 3.86
1797 2097 2.096496 GTCATCACATCTTTTCTGGCCG 59.904 50.000 0.00 0.00 0.00 6.13
1798 2098 1.402968 CATCACATCTTTTCTGGCCGG 59.597 52.381 4.71 4.71 0.00 6.13
1819 2134 0.534412 CCTATCCTAGAGCCGCCATG 59.466 60.000 0.00 0.00 0.00 3.66
1842 2157 2.015587 GGTCGTCCTCGTCTATCTGTT 58.984 52.381 0.00 0.00 38.33 3.16
1868 2183 2.094390 CACACAGGATGCATGGGAAAAG 60.094 50.000 2.46 0.00 42.53 2.27
1907 2222 2.414824 CGTCCTCTCCTCTTTCTGAACG 60.415 54.545 0.00 0.00 0.00 3.95
2052 2367 0.394192 CCACTCACTCAGCAACCTCA 59.606 55.000 0.00 0.00 0.00 3.86
2053 2368 1.607509 CCACTCACTCAGCAACCTCAG 60.608 57.143 0.00 0.00 0.00 3.35
2079 2394 1.740025 CTGGAAACGAAAGCATCCTCC 59.260 52.381 0.00 0.00 39.25 4.30
2080 2395 1.351017 TGGAAACGAAAGCATCCTCCT 59.649 47.619 0.00 0.00 39.25 3.69
2082 2397 2.355209 GGAAACGAAAGCATCCTCCTCT 60.355 50.000 0.00 0.00 36.52 3.69
2107 2422 8.877864 TCCTTTTCTTTCCATTATTAGAAGCA 57.122 30.769 0.00 0.00 0.00 3.91
2218 2533 2.230508 TCGCCTGGTTAACTGACTGTAG 59.769 50.000 5.42 0.00 0.00 2.74
2324 2643 0.388134 GCAACTTCGTCGCTCAGGTA 60.388 55.000 0.00 0.00 0.00 3.08
2342 2662 8.354426 GCTCAGGTAAGAAAGATAACCTACTAG 58.646 40.741 0.00 0.00 40.39 2.57
2430 2751 1.626825 TCCGGCTTTACTTGGCTTAGT 59.373 47.619 0.00 0.00 0.00 2.24
2431 2752 2.007608 CCGGCTTTACTTGGCTTAGTC 58.992 52.381 0.00 0.00 0.00 2.59
2432 2753 1.659098 CGGCTTTACTTGGCTTAGTCG 59.341 52.381 0.00 0.00 0.00 4.18
2433 2754 2.696506 GGCTTTACTTGGCTTAGTCGT 58.303 47.619 0.00 0.00 0.00 4.34
2434 2755 3.674138 CGGCTTTACTTGGCTTAGTCGTA 60.674 47.826 0.00 0.00 0.00 3.43
2435 2756 3.864003 GGCTTTACTTGGCTTAGTCGTAG 59.136 47.826 0.00 0.00 0.00 3.51
2436 2757 3.864003 GCTTTACTTGGCTTAGTCGTAGG 59.136 47.826 0.00 0.00 0.00 3.18
2437 2758 3.515330 TTACTTGGCTTAGTCGTAGGC 57.485 47.619 0.00 0.00 38.56 3.93
2454 2775 3.842007 AGGCTCGTAGCTAGACTTCTA 57.158 47.619 0.00 0.00 41.99 2.10
2477 2798 8.857098 TCTACCACTAGCAGTAACCTAATATTG 58.143 37.037 0.00 0.00 0.00 1.90
2504 2829 7.612668 TTTTCGATCTAGATCTACGATAGGG 57.387 40.000 26.29 10.68 36.56 3.53
2518 2848 4.887748 ACGATAGGGATTGATTAGTGCTG 58.112 43.478 0.00 0.00 43.77 4.41
2533 2863 1.661112 GTGCTGCCTCGATCTTGTAAC 59.339 52.381 0.00 0.00 0.00 2.50
2545 2875 7.599245 CCTCGATCTTGTAACTTGTAAACTTCT 59.401 37.037 0.00 0.00 0.00 2.85
2555 2885 7.939784 AACTTGTAAACTTCTATTCCCATCC 57.060 36.000 0.00 0.00 0.00 3.51
2561 2895 1.417890 CTTCTATTCCCATCCAGCCGT 59.582 52.381 0.00 0.00 0.00 5.68
2569 2903 1.303236 CATCCAGCCGTTGAACCCA 60.303 57.895 0.00 0.00 0.00 4.51
2594 2928 2.092753 CCCCACATGCAAGTCTACTGAT 60.093 50.000 0.00 0.00 0.00 2.90
2598 2932 5.647658 CCCACATGCAAGTCTACTGATTTAA 59.352 40.000 0.00 0.00 0.00 1.52
2599 2933 6.150976 CCCACATGCAAGTCTACTGATTTAAA 59.849 38.462 0.00 0.00 0.00 1.52
2600 2934 7.309133 CCCACATGCAAGTCTACTGATTTAAAA 60.309 37.037 0.00 0.00 0.00 1.52
2622 2960 4.592485 AAAAACATGTACGGGAATGCAA 57.408 36.364 0.00 0.00 0.00 4.08
2623 2961 3.569250 AAACATGTACGGGAATGCAAC 57.431 42.857 0.00 0.00 0.00 4.17
2752 3091 6.854496 AGCGATTGTGTACAAGTTAAGAAA 57.146 33.333 0.00 0.00 39.47 2.52
2831 3170 0.108585 CCTAGCAACACACCACCACT 59.891 55.000 0.00 0.00 0.00 4.00
2900 3240 3.001086 ACATAAAACCCTCCCCCTTTCT 58.999 45.455 0.00 0.00 0.00 2.52
2920 3260 1.086950 TTGGGGCCTTGGGGGTATA 59.913 57.895 0.84 0.00 37.43 1.47
3049 3389 0.524862 GCAAGGCAAGATGGTCACAG 59.475 55.000 0.00 0.00 0.00 3.66
3080 3420 0.531090 GTACCGAGCAACACACCACA 60.531 55.000 0.00 0.00 0.00 4.17
3081 3421 0.531090 TACCGAGCAACACACCACAC 60.531 55.000 0.00 0.00 0.00 3.82
3086 3426 2.407210 CAACACACCACACCACGC 59.593 61.111 0.00 0.00 0.00 5.34
3087 3427 2.045829 AACACACCACACCACGCA 60.046 55.556 0.00 0.00 0.00 5.24
3088 3428 2.403378 AACACACCACACCACGCAC 61.403 57.895 0.00 0.00 0.00 5.34
3089 3429 2.821810 CACACCACACCACGCACA 60.822 61.111 0.00 0.00 0.00 4.57
3090 3430 2.822255 ACACCACACCACGCACAC 60.822 61.111 0.00 0.00 0.00 3.82
3094 3434 1.227409 CCACACCACGCACACACTA 60.227 57.895 0.00 0.00 0.00 2.74
3104 3445 3.906008 CACGCACACACTACAAAAATAGC 59.094 43.478 0.00 0.00 0.00 2.97
3124 3465 2.546795 GCCTTCAGTGATACTCCATCCG 60.547 54.545 0.00 0.00 32.09 4.18
3125 3466 2.546795 CCTTCAGTGATACTCCATCCGC 60.547 54.545 0.00 0.00 32.09 5.54
3127 3468 1.957177 TCAGTGATACTCCATCCGCTC 59.043 52.381 0.00 0.00 32.09 5.03
3128 3469 1.959985 CAGTGATACTCCATCCGCTCT 59.040 52.381 0.00 0.00 32.09 4.09
3157 3498 6.812998 TGTAGCGCATATAAACTTTCTACCT 58.187 36.000 11.47 0.00 0.00 3.08
3159 3500 4.511826 AGCGCATATAAACTTTCTACCTGC 59.488 41.667 11.47 0.00 0.00 4.85
3161 3502 5.049405 GCGCATATAAACTTTCTACCTGCAT 60.049 40.000 0.30 0.00 0.00 3.96
3162 3503 6.365839 CGCATATAAACTTTCTACCTGCATG 58.634 40.000 0.00 0.00 0.00 4.06
3203 3624 2.362397 TCGTTTATCCTCTGGCTAGCTG 59.638 50.000 15.72 8.27 0.00 4.24
3317 3739 0.455972 GCAAAAGCAGCGCGGAATTA 60.456 50.000 13.03 0.00 0.00 1.40
3356 3779 1.157870 ACTTTGACAAGTGGACGCCG 61.158 55.000 0.00 0.00 42.05 6.46
3383 3827 7.094805 CGTTCCAACTCTCATTTTCTTAATCCA 60.095 37.037 0.00 0.00 0.00 3.41
3385 3829 8.340618 TCCAACTCTCATTTTCTTAATCCAAG 57.659 34.615 0.00 0.00 35.38 3.61
3386 3830 7.031975 CCAACTCTCATTTTCTTAATCCAAGC 58.968 38.462 0.00 0.00 33.94 4.01
3388 3832 6.488715 ACTCTCATTTTCTTAATCCAAGCCT 58.511 36.000 0.00 0.00 33.94 4.58
3390 3834 5.653769 TCTCATTTTCTTAATCCAAGCCTGG 59.346 40.000 0.00 0.00 45.08 4.45
3391 3835 4.160252 TCATTTTCTTAATCCAAGCCTGGC 59.840 41.667 11.65 11.65 43.17 4.85
3392 3836 2.897271 TTCTTAATCCAAGCCTGGCA 57.103 45.000 22.65 0.00 43.17 4.92
3393 3837 2.128771 TCTTAATCCAAGCCTGGCAC 57.871 50.000 22.65 0.00 43.17 5.01
3396 3840 0.407528 TAATCCAAGCCTGGCACCAA 59.592 50.000 22.65 3.76 43.17 3.67
3397 3841 0.252375 AATCCAAGCCTGGCACCAAT 60.252 50.000 22.65 6.14 43.17 3.16
3398 3842 0.685458 ATCCAAGCCTGGCACCAATC 60.685 55.000 22.65 0.00 43.17 2.67
3399 3843 2.703798 CCAAGCCTGGCACCAATCG 61.704 63.158 22.65 0.38 35.39 3.34
3407 3852 4.740822 GCACCAATCGCCCCCACT 62.741 66.667 0.00 0.00 0.00 4.00
3420 3865 3.512329 CGCCCCCACTTAATTAAAACCTT 59.488 43.478 0.00 0.00 0.00 3.50
3426 3871 8.308931 CCCCCACTTAATTAAAACCTTCTTTAC 58.691 37.037 0.00 0.00 0.00 2.01
3440 3885 5.221661 ACCTTCTTTACTCCGAACTTGACAT 60.222 40.000 0.00 0.00 0.00 3.06
3468 3913 2.027897 ACGCGAAAGGTACGTGCA 59.972 55.556 15.93 0.00 43.56 4.57
3469 3914 1.373748 ACGCGAAAGGTACGTGCAT 60.374 52.632 15.93 0.00 43.56 3.96
3470 3915 0.109179 ACGCGAAAGGTACGTGCATA 60.109 50.000 15.93 0.00 43.56 3.14
3520 3967 2.072298 GCAGGAAGATCAGTCACACAC 58.928 52.381 0.00 0.00 0.00 3.82
3522 3969 1.625818 AGGAAGATCAGTCACACACCC 59.374 52.381 0.00 0.00 0.00 4.61
3523 3970 1.347707 GGAAGATCAGTCACACACCCA 59.652 52.381 0.00 0.00 0.00 4.51
3529 3976 1.998438 AGTCACACACCCACACCCA 60.998 57.895 0.00 0.00 0.00 4.51
3634 4081 1.135972 CAACTGCTAACGGTGACATGC 60.136 52.381 0.00 0.00 34.87 4.06
3635 4082 0.034756 ACTGCTAACGGTGACATGCA 59.965 50.000 0.00 0.00 32.77 3.96
3636 4083 1.339055 ACTGCTAACGGTGACATGCAT 60.339 47.619 0.00 0.00 32.77 3.96
3650 4097 4.023739 ACATGCATTGTGTCGATTGATG 57.976 40.909 0.00 0.00 37.11 3.07
3655 4102 4.023365 TGCATTGTGTCGATTGATGTTTGA 60.023 37.500 0.00 0.00 0.00 2.69
3662 4109 5.740569 GTGTCGATTGATGTTTGATTGATGG 59.259 40.000 0.00 0.00 0.00 3.51
3663 4110 5.163632 TGTCGATTGATGTTTGATTGATGGG 60.164 40.000 0.00 0.00 0.00 4.00
3664 4111 4.046462 CGATTGATGTTTGATTGATGGGC 58.954 43.478 0.00 0.00 0.00 5.36
3668 4238 2.747396 TGTTTGATTGATGGGCTTGC 57.253 45.000 0.00 0.00 0.00 4.01
3807 4381 5.185454 TCGCCACAAGTCAAGATTCATATT 58.815 37.500 0.00 0.00 0.00 1.28
3808 4382 5.294306 TCGCCACAAGTCAAGATTCATATTC 59.706 40.000 0.00 0.00 0.00 1.75
3809 4383 5.065090 CGCCACAAGTCAAGATTCATATTCA 59.935 40.000 0.00 0.00 0.00 2.57
3810 4384 6.238566 CGCCACAAGTCAAGATTCATATTCAT 60.239 38.462 0.00 0.00 0.00 2.57
3812 4386 8.790718 GCCACAAGTCAAGATTCATATTCATAT 58.209 33.333 0.00 0.00 0.00 1.78
3865 4450 2.213499 GCACGCTCCATTATACAAGCT 58.787 47.619 0.00 0.00 32.55 3.74
3881 4466 2.281070 CTCCAACAGCAGCACGGT 60.281 61.111 0.00 0.00 0.00 4.83
3883 4468 1.845809 CTCCAACAGCAGCACGGTTC 61.846 60.000 0.00 0.00 34.16 3.62
3905 4494 5.123227 TCTCATTAATCGGTTGGTTCATCC 58.877 41.667 0.00 0.00 0.00 3.51
3964 4554 1.302366 TTCCATGTGCTCGATCATGC 58.698 50.000 15.30 4.12 39.74 4.06
3965 4555 0.178533 TCCATGTGCTCGATCATGCA 59.821 50.000 15.30 5.63 39.74 3.96
3966 4556 1.202722 TCCATGTGCTCGATCATGCAT 60.203 47.619 11.90 0.00 41.45 3.96
3967 4557 1.069227 CCATGTGCTCGATCATGCATG 60.069 52.381 21.07 21.07 41.45 4.06
4009 4608 3.973206 TGCGACATTTTTCCTCTCCTA 57.027 42.857 0.00 0.00 0.00 2.94
4010 4609 3.596214 TGCGACATTTTTCCTCTCCTAC 58.404 45.455 0.00 0.00 0.00 3.18
4011 4610 3.007506 TGCGACATTTTTCCTCTCCTACA 59.992 43.478 0.00 0.00 0.00 2.74
4012 4611 3.371285 GCGACATTTTTCCTCTCCTACAC 59.629 47.826 0.00 0.00 0.00 2.90
4016 4615 0.963962 TTTTCCTCTCCTACACGCGT 59.036 50.000 5.58 5.58 0.00 6.01
4018 4617 2.202623 CCTCTCCTACACGCGTGC 60.203 66.667 37.35 0.00 0.00 5.34
4021 4620 1.923227 CTCTCCTACACGCGTGCTGA 61.923 60.000 37.35 27.56 0.00 4.26
4025 4624 0.796312 CCTACACGCGTGCTGAAATT 59.204 50.000 37.35 19.49 0.00 1.82
4031 4630 0.792640 CGCGTGCTGAAATTCTGAGT 59.207 50.000 0.00 0.00 0.00 3.41
4036 4720 3.662713 CGTGCTGAAATTCTGAGTCGTTG 60.663 47.826 4.00 0.00 0.00 4.10
4055 4739 3.580193 CTGCCATGCCAGCGCTAC 61.580 66.667 10.99 6.05 35.36 3.58
4056 4740 4.407245 TGCCATGCCAGCGCTACA 62.407 61.111 10.99 12.84 35.36 2.74
4057 4741 3.880846 GCCATGCCAGCGCTACAC 61.881 66.667 10.99 2.51 35.36 2.90
4064 4748 1.516386 CCAGCGCTACACCTACACG 60.516 63.158 10.99 0.00 0.00 4.49
4082 4776 2.338620 CGTTGGCGTCTCAGTCCA 59.661 61.111 0.00 0.00 0.00 4.02
4156 4875 2.038329 TAGGTCGGGGTGGTCCAG 59.962 66.667 0.00 0.00 37.22 3.86
4217 4936 3.011119 CCTACTCAAGTACAGAGTCGCT 58.989 50.000 20.13 3.69 44.70 4.93
4234 4953 2.813754 TCGCTGAGTTGCTAGCATTTTT 59.186 40.909 20.13 4.31 39.87 1.94
4237 4956 3.248266 CTGAGTTGCTAGCATTTTTGGC 58.752 45.455 20.13 4.90 0.00 4.52
4266 4985 1.006281 TGGACCACGTACCCTACTGAT 59.994 52.381 0.00 0.00 0.00 2.90
4276 4995 1.236628 CCCTACTGATACGGACCGAG 58.763 60.000 23.38 10.02 0.00 4.63
4277 4996 1.476471 CCCTACTGATACGGACCGAGT 60.476 57.143 23.38 15.82 0.00 4.18
4278 4997 2.295885 CCTACTGATACGGACCGAGTT 58.704 52.381 23.38 4.10 0.00 3.01
4279 4998 2.033049 CCTACTGATACGGACCGAGTTG 59.967 54.545 23.38 13.71 0.00 3.16
4280 4999 0.815734 ACTGATACGGACCGAGTTGG 59.184 55.000 23.38 9.88 46.41 3.77
4281 5000 0.527817 CTGATACGGACCGAGTTGGC 60.528 60.000 23.38 4.06 43.94 4.52
4282 5001 0.968901 TGATACGGACCGAGTTGGCT 60.969 55.000 23.38 0.00 43.94 4.75
4283 5002 0.248949 GATACGGACCGAGTTGGCTC 60.249 60.000 23.38 2.40 43.94 4.70
4361 5081 1.061411 CATTGCATCGTCGTGCTGG 59.939 57.895 16.80 6.50 45.27 4.85
4427 5153 1.425428 CTTCGACGGGAAGCAATGC 59.575 57.895 0.00 0.00 45.21 3.56
4428 5154 1.298157 CTTCGACGGGAAGCAATGCA 61.298 55.000 8.35 0.00 45.21 3.96
4429 5155 0.886938 TTCGACGGGAAGCAATGCAA 60.887 50.000 8.35 0.00 0.00 4.08
4477 5218 2.982130 GGTCGAGGCAGATGGTGT 59.018 61.111 0.00 0.00 0.00 4.16
4478 5219 1.448540 GGTCGAGGCAGATGGTGTG 60.449 63.158 0.00 0.00 0.00 3.82
4499 5240 0.525668 CGTACACATCGCTCTGGACC 60.526 60.000 0.00 0.00 0.00 4.46
4500 5241 0.530744 GTACACATCGCTCTGGACCA 59.469 55.000 0.00 0.00 0.00 4.02
4501 5242 0.530744 TACACATCGCTCTGGACCAC 59.469 55.000 0.00 0.00 0.00 4.16
4502 5243 1.807165 CACATCGCTCTGGACCACG 60.807 63.158 0.00 0.00 0.00 4.94
4578 5323 0.677731 ATGGACACGGCAACATCTGG 60.678 55.000 0.00 0.00 0.00 3.86
4641 5386 0.806492 GATCGAGCCCCTTTGTCGTC 60.806 60.000 0.00 0.00 35.22 4.20
4647 5392 2.025418 CCCCTTTGTCGTCGAACGG 61.025 63.158 0.00 0.00 42.81 4.44
4789 5574 4.517832 GGTTTTACCAAGGAAGTGTGTAGG 59.482 45.833 0.00 0.00 38.42 3.18
4801 5588 7.408543 AGGAAGTGTGTAGGTAGTGTCTAATA 58.591 38.462 0.00 0.00 0.00 0.98
4805 5592 9.690913 AAGTGTGTAGGTAGTGTCTAATACATA 57.309 33.333 0.00 0.00 41.10 2.29
4806 5593 9.118300 AGTGTGTAGGTAGTGTCTAATACATAC 57.882 37.037 14.69 14.69 41.96 2.39
4807 5594 8.896744 GTGTGTAGGTAGTGTCTAATACATACA 58.103 37.037 7.90 7.90 46.01 2.29
4852 5639 1.767088 CTGATGAAGCTGATGGAGGGA 59.233 52.381 0.00 0.00 0.00 4.20
4855 5642 1.198713 TGAAGCTGATGGAGGGAGAC 58.801 55.000 0.00 0.00 0.00 3.36
5062 5849 3.787001 CTCAGGAACGGCCTCCCC 61.787 72.222 7.41 1.85 46.97 4.81
5146 5933 0.393944 ACGGCTCCGAGTAGTGATCA 60.394 55.000 15.95 0.00 42.83 2.92
5151 5938 0.034767 TCCGAGTAGTGATCACCCGT 60.035 55.000 22.21 6.78 0.00 5.28
5231 6022 3.849574 TGTAGGATGGATTTGTTGAGGGA 59.150 43.478 0.00 0.00 0.00 4.20
5269 6060 3.838317 TGACAGTAACAGCAAGGATACCT 59.162 43.478 0.00 0.00 33.87 3.08
5288 6079 8.139989 GGATACCTGGAAATGAATGAATGAAAG 58.860 37.037 0.00 0.00 0.00 2.62
5332 6123 2.472397 CGACTGTGTAGCTTTTTAGCGC 60.472 50.000 0.00 0.00 40.27 5.92
5362 6153 2.398588 TGGGTGAAGTAGCTAGATGGG 58.601 52.381 0.00 0.00 0.00 4.00
5401 6192 3.547413 CGCGATCTTAACTATGACCGTGA 60.547 47.826 0.00 0.00 0.00 4.35
5416 6207 1.527736 CCGTGACCGAAATTTGTTCGA 59.472 47.619 9.89 0.00 43.97 3.71
5437 6228 6.863230 TCGATCGCATTCTTCTAATTTTACG 58.137 36.000 11.09 0.00 0.00 3.18
5442 6233 8.637281 TCGCATTCTTCTAATTTTACGTCATA 57.363 30.769 0.00 0.00 0.00 2.15
5443 6234 9.089601 TCGCATTCTTCTAATTTTACGTCATAA 57.910 29.630 0.00 0.00 0.00 1.90
5444 6235 9.864034 CGCATTCTTCTAATTTTACGTCATAAT 57.136 29.630 0.00 0.00 0.00 1.28
5482 6279 7.709182 TCCATGTTGATTTATAGAACTGGTACG 59.291 37.037 0.00 0.00 0.00 3.67
5508 6305 4.427312 GAGGGCACATGTTTGATGAAATC 58.573 43.478 0.00 0.00 45.83 2.17
5513 6310 5.106987 GGCACATGTTTGATGAAATCCAAAC 60.107 40.000 0.00 10.09 44.73 2.93
5515 6312 6.018098 GCACATGTTTGATGAAATCCAAACAA 60.018 34.615 19.88 8.06 46.62 2.83
5516 6313 7.308109 GCACATGTTTGATGAAATCCAAACAAT 60.308 33.333 19.88 11.44 46.62 2.71
5517 6314 8.225107 CACATGTTTGATGAAATCCAAACAATC 58.775 33.333 19.88 4.46 46.62 2.67
5518 6315 8.152246 ACATGTTTGATGAAATCCAAACAATCT 58.848 29.630 19.88 5.96 46.62 2.40
5519 6316 8.653338 CATGTTTGATGAAATCCAAACAATCTC 58.347 33.333 19.88 0.00 46.62 2.75
5524 6321 5.818136 TGAAATCCAAACAATCTCGATCC 57.182 39.130 0.00 0.00 0.00 3.36
5556 6353 1.840635 AGAGACCCATTTACTGGCTCC 59.159 52.381 0.00 0.00 44.46 4.70
5559 6356 0.034089 ACCCATTTACTGGCTCCTGC 60.034 55.000 0.00 0.00 44.46 4.85
5561 6358 1.098050 CCATTTACTGGCTCCTGCAC 58.902 55.000 0.00 0.00 38.47 4.57
5565 6362 1.825090 TTACTGGCTCCTGCACAATG 58.175 50.000 0.00 0.00 41.91 2.82
5569 6369 2.056223 GGCTCCTGCACAATGGCAT 61.056 57.895 0.00 0.00 43.97 4.40
5571 6371 1.035932 GCTCCTGCACAATGGCATCT 61.036 55.000 0.00 0.00 43.97 2.90
5599 6399 6.411376 TGTTTAAGACTTGTCTGAACTTCCA 58.589 36.000 20.53 7.61 0.00 3.53
5605 6405 3.456277 ACTTGTCTGAACTTCCAGTCCTT 59.544 43.478 0.00 0.00 35.71 3.36
5632 6478 2.044946 AGGGAGGAAACGGCATGC 60.045 61.111 9.90 9.90 0.00 4.06
5644 6490 1.741770 GGCATGCCGACTTTCTCGT 60.742 57.895 23.48 0.00 41.18 4.18
5646 6492 0.737715 GCATGCCGACTTTCTCGTCT 60.738 55.000 6.36 0.00 41.18 4.18
5647 6493 1.714794 CATGCCGACTTTCTCGTCTT 58.285 50.000 0.00 0.00 41.18 3.01
5681 6539 4.771114 AATGCAACAGCTACCCTACATA 57.229 40.909 0.00 0.00 0.00 2.29
5690 6555 2.564771 CTACCCTACATACGGTCGTCA 58.435 52.381 0.00 0.00 33.36 4.35
5693 6558 2.762327 ACCCTACATACGGTCGTCAATT 59.238 45.455 0.00 0.00 0.00 2.32
5694 6559 3.120792 CCCTACATACGGTCGTCAATTG 58.879 50.000 0.00 0.00 0.00 2.32
5802 6685 9.832445 AATTATTACCAGAGATAACATTCGTGT 57.168 29.630 0.00 0.00 0.00 4.49
5804 6687 9.661563 TTATTACCAGAGATAACATTCGTGTTT 57.338 29.630 0.00 0.00 33.59 2.83
5921 6807 3.553096 GCCATGGTACCAATCTAGAGTCG 60.553 52.174 20.76 0.00 0.00 4.18
5964 6850 1.411041 AGGGTGTAGGACGATTAGCC 58.589 55.000 0.00 0.00 0.00 3.93
6010 6896 1.461127 GCCTTGAGTGAACTACAAGCG 59.539 52.381 13.01 9.59 39.41 4.68
6020 6906 3.259064 GAACTACAAGCGCTGGTTATCA 58.741 45.455 25.12 3.46 0.00 2.15
6034 6920 4.021229 TGGTTATCAGGTAGATGACACGT 58.979 43.478 0.00 0.00 43.13 4.49
6063 6949 0.324738 TCGGATGAGGAGGAACAGCT 60.325 55.000 0.00 0.00 0.00 4.24
6101 6987 3.338249 GTTAGCAGCACTTGAAGGATCA 58.662 45.455 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.749609 GCTTAGCCTAACGAACGCGG 61.750 60.000 12.47 0.00 43.17 6.46
28 29 1.815840 GAGCTTCCACCGGCTTAGC 60.816 63.158 0.00 5.79 39.05 3.09
100 111 0.035534 TCGTACTACGTGTGGGCCTA 60.036 55.000 4.53 0.00 43.14 3.93
103 114 0.098376 CTCTCGTACTACGTGTGGGC 59.902 60.000 8.42 0.00 43.14 5.36
123 134 0.392461 TGGAAACGTGCAGGCTATCC 60.392 55.000 6.26 11.82 0.00 2.59
144 163 4.429212 TAGCGTCGCATGCACCGT 62.429 61.111 21.09 11.31 31.07 4.83
146 165 3.913573 CGTAGCGTCGCATGCACC 61.914 66.667 21.09 5.98 31.07 5.01
152 171 3.391160 CTAGCCACGTAGCGTCGCA 62.391 63.158 21.09 2.36 45.49 5.10
153 172 2.651232 CTAGCCACGTAGCGTCGC 60.651 66.667 9.80 9.80 43.62 5.19
162 181 1.805945 GAGCGTTCACCTAGCCACG 60.806 63.158 0.00 0.00 35.71 4.94
232 258 1.950909 CCCGTTTGAACCAGCAAAGTA 59.049 47.619 0.00 0.00 38.33 2.24
234 260 1.028905 TCCCGTTTGAACCAGCAAAG 58.971 50.000 0.00 0.00 38.33 2.77
280 306 2.664568 GTGTCAAGCGTTATGAAGCGTA 59.335 45.455 0.00 0.00 38.61 4.42
319 357 0.179235 CGTTGTTACGCGTCAATGGG 60.179 55.000 18.63 5.08 41.41 4.00
355 425 3.022287 CACGTCAAGGGTGTGCAC 58.978 61.111 10.75 10.75 0.00 4.57
358 428 4.012895 GCGCACGTCAAGGGTGTG 62.013 66.667 0.30 1.40 46.00 3.82
420 490 1.086634 GCTTAGCTCGCACTCTTGGG 61.087 60.000 0.00 0.00 37.01 4.12
421 491 0.390340 TGCTTAGCTCGCACTCTTGG 60.390 55.000 5.60 0.00 31.40 3.61
422 492 3.128259 TGCTTAGCTCGCACTCTTG 57.872 52.632 5.60 0.00 31.40 3.02
428 498 0.318441 AGTTCTGTGCTTAGCTCGCA 59.682 50.000 5.60 6.52 34.52 5.10
430 500 1.728971 CCAAGTTCTGTGCTTAGCTCG 59.271 52.381 5.60 0.00 0.00 5.03
431 501 3.045601 TCCAAGTTCTGTGCTTAGCTC 57.954 47.619 5.60 1.97 0.00 4.09
432 502 3.181450 ACTTCCAAGTTCTGTGCTTAGCT 60.181 43.478 5.60 0.00 35.21 3.32
433 503 3.142174 ACTTCCAAGTTCTGTGCTTAGC 58.858 45.455 0.00 0.00 35.21 3.09
445 515 0.466963 ACGGGTTCGAACTTCCAAGT 59.533 50.000 26.32 12.04 39.40 3.16
446 516 1.145803 GACGGGTTCGAACTTCCAAG 58.854 55.000 26.32 11.47 40.11 3.61
447 517 0.464870 TGACGGGTTCGAACTTCCAA 59.535 50.000 26.32 8.58 40.11 3.53
448 518 0.464870 TTGACGGGTTCGAACTTCCA 59.535 50.000 26.32 16.15 40.11 3.53
449 519 1.585297 TTTGACGGGTTCGAACTTCC 58.415 50.000 26.32 18.83 40.11 3.46
450 520 2.286595 GGTTTTGACGGGTTCGAACTTC 60.287 50.000 26.32 19.47 40.11 3.01
451 521 1.672363 GGTTTTGACGGGTTCGAACTT 59.328 47.619 26.32 12.16 40.11 2.66
452 522 1.302366 GGTTTTGACGGGTTCGAACT 58.698 50.000 26.32 8.28 40.11 3.01
453 523 1.003223 CTGGTTTTGACGGGTTCGAAC 60.003 52.381 20.14 20.14 40.11 3.95
454 524 1.301423 CTGGTTTTGACGGGTTCGAA 58.699 50.000 0.00 0.00 40.11 3.71
532 622 1.261938 TACGTGCACTGCTGGGGTAT 61.262 55.000 16.19 0.00 0.00 2.73
533 623 1.473497 TTACGTGCACTGCTGGGGTA 61.473 55.000 16.19 4.85 0.00 3.69
534 624 2.813726 TTACGTGCACTGCTGGGGT 61.814 57.895 16.19 5.90 0.00 4.95
535 625 2.031919 TTACGTGCACTGCTGGGG 59.968 61.111 16.19 0.00 0.00 4.96
536 626 2.667318 CGTTACGTGCACTGCTGGG 61.667 63.158 16.19 0.00 0.00 4.45
537 627 1.663388 TCGTTACGTGCACTGCTGG 60.663 57.895 16.19 0.68 0.00 4.85
538 628 1.487231 GTCGTTACGTGCACTGCTG 59.513 57.895 16.19 1.10 0.00 4.41
539 629 1.663702 GGTCGTTACGTGCACTGCT 60.664 57.895 16.19 0.00 0.00 4.24
540 630 2.664436 GGGTCGTTACGTGCACTGC 61.664 63.158 16.19 0.00 0.00 4.40
541 631 2.369629 CGGGTCGTTACGTGCACTG 61.370 63.158 16.19 11.05 0.00 3.66
542 632 2.049802 CGGGTCGTTACGTGCACT 60.050 61.111 16.19 4.64 0.00 4.40
543 633 3.107661 CCGGGTCGTTACGTGCAC 61.108 66.667 6.82 6.82 0.00 4.57
546 636 1.955157 TTTGCCGGGTCGTTACGTG 60.955 57.895 2.18 0.00 0.00 4.49
547 637 1.955663 GTTTGCCGGGTCGTTACGT 60.956 57.895 2.18 0.00 0.00 3.57
548 638 1.893168 CTGTTTGCCGGGTCGTTACG 61.893 60.000 2.18 0.00 0.00 3.18
549 639 1.864176 CTGTTTGCCGGGTCGTTAC 59.136 57.895 2.18 0.00 0.00 2.50
550 640 1.962306 GCTGTTTGCCGGGTCGTTA 60.962 57.895 2.18 0.00 35.15 3.18
551 641 3.284449 GCTGTTTGCCGGGTCGTT 61.284 61.111 2.18 0.00 35.15 3.85
552 642 4.555709 TGCTGTTTGCCGGGTCGT 62.556 61.111 2.18 0.00 42.00 4.34
553 643 3.726517 CTGCTGTTTGCCGGGTCG 61.727 66.667 2.18 0.00 42.00 4.79
554 644 1.734388 AAACTGCTGTTTGCCGGGTC 61.734 55.000 19.47 0.00 43.90 4.46
555 645 1.734388 GAAACTGCTGTTTGCCGGGT 61.734 55.000 24.23 0.41 45.36 5.28
556 646 1.007387 GAAACTGCTGTTTGCCGGG 60.007 57.895 24.23 0.00 45.36 5.73
557 647 0.040067 GAGAAACTGCTGTTTGCCGG 60.040 55.000 24.23 0.00 45.36 6.13
564 654 5.405935 AAAAACAAAGGAGAAACTGCTGT 57.594 34.783 0.00 0.00 31.17 4.40
570 660 5.907945 GCTCGAGTAAAAACAAAGGAGAAAC 59.092 40.000 15.13 0.00 0.00 2.78
594 689 1.661341 CTGGCTTCGAGGAAAGGATG 58.339 55.000 0.00 0.00 0.00 3.51
702 817 1.998315 CGATGTTTGACTGAGGCTGAG 59.002 52.381 0.00 0.00 0.00 3.35
703 818 1.338105 CCGATGTTTGACTGAGGCTGA 60.338 52.381 0.00 0.00 0.00 4.26
704 819 1.081892 CCGATGTTTGACTGAGGCTG 58.918 55.000 0.00 0.00 0.00 4.85
705 820 0.036010 CCCGATGTTTGACTGAGGCT 60.036 55.000 0.00 0.00 0.00 4.58
706 821 1.648467 GCCCGATGTTTGACTGAGGC 61.648 60.000 0.00 0.00 0.00 4.70
707 822 0.321564 TGCCCGATGTTTGACTGAGG 60.322 55.000 0.00 0.00 0.00 3.86
748 863 4.467084 GCCCCTCGATGTGGCGAA 62.467 66.667 4.49 0.00 40.13 4.70
921 1039 3.706373 TGTGCGGGAGAAGAGGGC 61.706 66.667 0.00 0.00 0.00 5.19
1177 1458 2.284151 GGAGGGGGAGAGGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
1503 1787 1.207089 TGCCGGATCATCTCGAAGTTT 59.793 47.619 5.05 0.00 0.00 2.66
1793 2091 1.252215 GCTCTAGGATAGGACCGGCC 61.252 65.000 0.00 3.58 39.78 6.13
1794 2092 1.252215 GGCTCTAGGATAGGACCGGC 61.252 65.000 0.00 0.00 39.78 6.13
1797 2097 1.252215 GGCGGCTCTAGGATAGGACC 61.252 65.000 0.00 0.00 39.78 4.46
1798 2098 0.539901 TGGCGGCTCTAGGATAGGAC 60.540 60.000 11.43 0.00 39.78 3.85
1819 2134 2.115533 GATAGACGAGGACGACCGCC 62.116 65.000 1.74 0.00 42.66 6.13
1822 2137 1.666054 ACAGATAGACGAGGACGACC 58.334 55.000 0.00 0.00 42.66 4.79
1842 2157 0.678684 CATGCATCCTGTGTGCTCCA 60.679 55.000 0.00 0.00 42.92 3.86
1868 2183 0.379669 CGATGGCAGCATTTCTGTCC 59.620 55.000 2.73 0.00 46.65 4.02
1907 2222 2.351738 GCACACCTGCACAAATACTTCC 60.352 50.000 0.00 0.00 43.62 3.46
2052 2367 1.269257 GCTTTCGTTTCCAGCAAAGCT 60.269 47.619 7.78 0.00 44.83 3.74
2053 2368 1.131771 GCTTTCGTTTCCAGCAAAGC 58.868 50.000 0.00 0.00 42.80 3.51
2080 2395 9.178758 GCTTCTAATAATGGAAAGAAAAGGAGA 57.821 33.333 0.00 0.00 0.00 3.71
2082 2397 8.877864 TGCTTCTAATAATGGAAAGAAAAGGA 57.122 30.769 0.00 0.00 0.00 3.36
2115 2430 9.168451 GCTACTACTAGCTGACATCATAATCTA 57.832 37.037 0.00 0.00 42.11 1.98
2218 2533 1.133790 CCTGCCAGCACAAAGATTAGC 59.866 52.381 0.00 0.00 0.00 3.09
2351 2671 7.066525 GCTTGTGCATGGGTAATTAGTTAGTTA 59.933 37.037 0.00 0.00 39.41 2.24
2352 2672 6.127730 GCTTGTGCATGGGTAATTAGTTAGTT 60.128 38.462 0.00 0.00 39.41 2.24
2353 2673 5.357032 GCTTGTGCATGGGTAATTAGTTAGT 59.643 40.000 0.00 0.00 39.41 2.24
2354 2674 5.356751 TGCTTGTGCATGGGTAATTAGTTAG 59.643 40.000 0.00 0.00 45.31 2.34
2383 2703 0.531090 AAGTTACGTGGAAGCGTGCA 60.531 50.000 0.00 0.00 45.33 4.57
2384 2704 0.163146 GAAGTTACGTGGAAGCGTGC 59.837 55.000 0.00 0.00 45.33 5.34
2385 2705 0.788391 GGAAGTTACGTGGAAGCGTG 59.212 55.000 0.00 0.00 45.33 5.34
2411 2731 2.007608 GACTAAGCCAAGTAAAGCCGG 58.992 52.381 0.00 0.00 0.00 6.13
2413 2734 2.696506 ACGACTAAGCCAAGTAAAGCC 58.303 47.619 0.00 0.00 0.00 4.35
2430 2751 1.411977 AGTCTAGCTACGAGCCTACGA 59.588 52.381 0.00 0.00 43.77 3.43
2431 2752 1.868469 AGTCTAGCTACGAGCCTACG 58.132 55.000 0.00 0.00 43.77 3.51
2432 2753 3.469739 AGAAGTCTAGCTACGAGCCTAC 58.530 50.000 0.00 0.00 43.77 3.18
2433 2754 3.842007 AGAAGTCTAGCTACGAGCCTA 57.158 47.619 0.00 0.00 43.77 3.93
2434 2755 2.721425 AGAAGTCTAGCTACGAGCCT 57.279 50.000 0.00 0.00 43.77 4.58
2435 2756 2.549329 GGTAGAAGTCTAGCTACGAGCC 59.451 54.545 9.73 0.00 43.77 4.70
2436 2757 3.002553 GTGGTAGAAGTCTAGCTACGAGC 59.997 52.174 16.26 0.00 44.74 5.03
2437 2758 4.444536 AGTGGTAGAAGTCTAGCTACGAG 58.555 47.826 16.26 0.00 44.74 4.18
2454 2775 7.433537 ACAATATTAGGTTACTGCTAGTGGT 57.566 36.000 0.00 0.00 0.00 4.16
2504 2829 2.826428 TCGAGGCAGCACTAATCAATC 58.174 47.619 0.00 0.00 0.00 2.67
2518 2848 5.638234 AGTTTACAAGTTACAAGATCGAGGC 59.362 40.000 0.00 0.00 0.00 4.70
2533 2863 6.038714 GCTGGATGGGAATAGAAGTTTACAAG 59.961 42.308 0.00 0.00 0.00 3.16
2545 2875 1.208706 TCAACGGCTGGATGGGAATA 58.791 50.000 0.00 0.00 0.00 1.75
2555 2885 2.908073 GCTGTGGGTTCAACGGCTG 61.908 63.158 0.19 0.00 0.00 4.85
2561 2895 2.017668 ATGTGGGGCTGTGGGTTCAA 62.018 55.000 0.00 0.00 0.00 2.69
2569 2903 1.604593 GACTTGCATGTGGGGCTGT 60.605 57.895 10.37 0.00 0.00 4.40
2602 2936 3.319405 TGTTGCATTCCCGTACATGTTTT 59.681 39.130 2.30 0.00 0.00 2.43
2612 2950 5.049405 GGAGTAATAGAATGTTGCATTCCCG 60.049 44.000 15.63 0.00 0.00 5.14
2697 3035 9.802039 AAAAATGGTCTAGTTTTGGAGTATGTA 57.198 29.630 0.00 0.00 35.46 2.29
2698 3036 8.706322 AAAAATGGTCTAGTTTTGGAGTATGT 57.294 30.769 0.00 0.00 35.46 2.29
2752 3091 3.822996 CGTGACTGTGACGACTCTATTT 58.177 45.455 14.60 0.00 39.21 1.40
2762 3101 3.106407 GCCTCGCGTGACTGTGAC 61.106 66.667 10.21 0.00 0.00 3.67
2764 3103 4.662961 TGGCCTCGCGTGACTGTG 62.663 66.667 10.21 0.00 0.00 3.66
2831 3170 4.574892 TGACGACTATTTTTGGAGCATCA 58.425 39.130 0.00 0.00 36.25 3.07
2900 3240 3.992268 TATACCCCCAAGGCCCCAACA 62.992 57.143 0.00 0.00 40.58 3.33
3049 3389 4.446413 CGGTACAGTGCCGTCCCC 62.446 72.222 21.09 0.00 43.84 4.81
3080 3420 1.740297 TTTTGTAGTGTGTGCGTGGT 58.260 45.000 0.00 0.00 0.00 4.16
3081 3421 2.834574 TTTTTGTAGTGTGTGCGTGG 57.165 45.000 0.00 0.00 0.00 4.94
3086 3426 6.017109 ACTGAAGGCTATTTTTGTAGTGTGTG 60.017 38.462 0.00 0.00 0.00 3.82
3087 3427 6.017109 CACTGAAGGCTATTTTTGTAGTGTGT 60.017 38.462 0.00 0.00 0.00 3.72
3088 3428 6.204688 TCACTGAAGGCTATTTTTGTAGTGTG 59.795 38.462 0.00 0.00 35.69 3.82
3089 3429 6.296026 TCACTGAAGGCTATTTTTGTAGTGT 58.704 36.000 0.00 0.00 35.69 3.55
3090 3430 6.801539 TCACTGAAGGCTATTTTTGTAGTG 57.198 37.500 0.00 0.00 35.56 2.74
3094 3434 6.599638 GGAGTATCACTGAAGGCTATTTTTGT 59.400 38.462 0.00 0.00 36.25 2.83
3104 3445 2.546795 GCGGATGGAGTATCACTGAAGG 60.547 54.545 0.00 0.00 37.54 3.46
3124 3465 8.635877 AGTTTATATGCGCTACATTATAGAGC 57.364 34.615 9.73 3.09 40.38 4.09
3155 3496 5.080969 AGAAATGATGAAAACCATGCAGG 57.919 39.130 0.00 0.00 45.67 4.85
3157 3498 5.856156 ACAAGAAATGATGAAAACCATGCA 58.144 33.333 0.00 0.00 35.17 3.96
3159 3500 7.169645 ACGAAACAAGAAATGATGAAAACCATG 59.830 33.333 0.00 0.00 35.17 3.66
3161 3502 6.568869 ACGAAACAAGAAATGATGAAAACCA 58.431 32.000 0.00 0.00 0.00 3.67
3162 3503 7.463469 AACGAAACAAGAAATGATGAAAACC 57.537 32.000 0.00 0.00 0.00 3.27
3165 3506 9.405587 GGATAAACGAAACAAGAAATGATGAAA 57.594 29.630 0.00 0.00 0.00 2.69
3317 3739 9.520515 TCAAAGTTTCTCCATCTAGCTTAATTT 57.479 29.630 0.00 0.00 0.00 1.82
3356 3779 4.489679 AAGAAAATGAGAGTTGGAACGC 57.510 40.909 0.00 0.00 0.00 4.84
3383 3827 3.064324 GCGATTGGTGCCAGGCTT 61.064 61.111 14.15 0.00 0.00 4.35
3390 3834 2.830186 TAAGTGGGGGCGATTGGTGC 62.830 60.000 0.00 0.00 0.00 5.01
3391 3835 0.322997 TTAAGTGGGGGCGATTGGTG 60.323 55.000 0.00 0.00 0.00 4.17
3392 3836 0.629058 ATTAAGTGGGGGCGATTGGT 59.371 50.000 0.00 0.00 0.00 3.67
3393 3837 1.775385 AATTAAGTGGGGGCGATTGG 58.225 50.000 0.00 0.00 0.00 3.16
3396 3840 3.702548 GGTTTTAATTAAGTGGGGGCGAT 59.297 43.478 0.00 0.00 0.00 4.58
3397 3841 3.090790 GGTTTTAATTAAGTGGGGGCGA 58.909 45.455 0.00 0.00 0.00 5.54
3398 3842 3.093814 AGGTTTTAATTAAGTGGGGGCG 58.906 45.455 0.00 0.00 0.00 6.13
3399 3843 4.775780 AGAAGGTTTTAATTAAGTGGGGGC 59.224 41.667 0.00 0.00 0.00 5.80
3401 3846 9.085645 AGTAAAGAAGGTTTTAATTAAGTGGGG 57.914 33.333 0.00 0.00 0.00 4.96
3405 3850 9.783081 TCGGAGTAAAGAAGGTTTTAATTAAGT 57.217 29.630 0.00 0.00 0.00 2.24
3420 3865 5.462530 TCATGTCAAGTTCGGAGTAAAGA 57.537 39.130 0.00 0.00 0.00 2.52
3426 3871 5.869753 AAAGAATCATGTCAAGTTCGGAG 57.130 39.130 0.00 0.00 0.00 4.63
3428 3873 6.307155 GTGTAAAGAATCATGTCAAGTTCGG 58.693 40.000 0.00 0.00 0.00 4.30
3429 3874 6.009474 CGTGTAAAGAATCATGTCAAGTTCG 58.991 40.000 0.00 0.00 0.00 3.95
3440 3885 3.395639 ACCTTTCGCGTGTAAAGAATCA 58.604 40.909 17.49 0.00 36.27 2.57
3467 3912 5.415389 TCATTTCTTCCACCACACACATATG 59.585 40.000 0.00 0.00 0.00 1.78
3468 3913 5.569355 TCATTTCTTCCACCACACACATAT 58.431 37.500 0.00 0.00 0.00 1.78
3469 3914 4.979335 TCATTTCTTCCACCACACACATA 58.021 39.130 0.00 0.00 0.00 2.29
3470 3915 3.831323 TCATTTCTTCCACCACACACAT 58.169 40.909 0.00 0.00 0.00 3.21
3520 3967 3.814906 TGTGGGTGTGGGTGTGGG 61.815 66.667 0.00 0.00 0.00 4.61
3522 3969 2.899838 CGTGTGGGTGTGGGTGTG 60.900 66.667 0.00 0.00 0.00 3.82
3523 3970 4.183858 CCGTGTGGGTGTGGGTGT 62.184 66.667 0.00 0.00 0.00 4.16
3634 4081 6.802834 TCAATCAAACATCAATCGACACAATG 59.197 34.615 0.00 0.00 0.00 2.82
3635 4082 6.912082 TCAATCAAACATCAATCGACACAAT 58.088 32.000 0.00 0.00 0.00 2.71
3636 4083 6.311055 TCAATCAAACATCAATCGACACAA 57.689 33.333 0.00 0.00 0.00 3.33
3650 4097 2.997986 CAAGCAAGCCCATCAATCAAAC 59.002 45.455 0.00 0.00 0.00 2.93
3655 4102 0.899720 CACCAAGCAAGCCCATCAAT 59.100 50.000 0.00 0.00 0.00 2.57
3668 4238 3.429141 CTCAGCGCCTGCACCAAG 61.429 66.667 2.29 0.00 46.23 3.61
3816 4390 2.631428 CAAGGGAACGTGCGTGTG 59.369 61.111 0.00 0.00 31.77 3.82
3847 4421 2.434336 TGGAGCTTGTATAATGGAGCGT 59.566 45.455 0.00 0.00 39.99 5.07
3848 4422 3.111853 TGGAGCTTGTATAATGGAGCG 57.888 47.619 0.00 0.00 39.99 5.03
3849 4423 4.199310 TGTTGGAGCTTGTATAATGGAGC 58.801 43.478 0.00 0.00 35.42 4.70
3850 4424 4.274459 GCTGTTGGAGCTTGTATAATGGAG 59.726 45.833 0.00 0.00 45.21 3.86
3865 4450 1.891919 GAACCGTGCTGCTGTTGGA 60.892 57.895 0.00 0.00 0.00 3.53
3881 4466 5.588648 GGATGAACCAACCGATTAATGAGAA 59.411 40.000 0.00 0.00 38.79 2.87
3883 4468 4.881273 TGGATGAACCAACCGATTAATGAG 59.119 41.667 0.00 0.00 46.75 2.90
3933 4523 2.991190 GCACATGGAAATCAACTGCAAG 59.009 45.455 0.00 0.00 42.29 4.01
3992 4588 3.371285 GCGTGTAGGAGAGGAAAAATGTC 59.629 47.826 0.00 0.00 0.00 3.06
3995 4591 2.028385 ACGCGTGTAGGAGAGGAAAAAT 60.028 45.455 12.93 0.00 0.00 1.82
4009 4608 0.235665 CAGAATTTCAGCACGCGTGT 59.764 50.000 36.80 22.42 0.00 4.49
4010 4609 0.512518 TCAGAATTTCAGCACGCGTG 59.487 50.000 34.01 34.01 0.00 5.34
4011 4610 0.792640 CTCAGAATTTCAGCACGCGT 59.207 50.000 5.58 5.58 0.00 6.01
4012 4611 0.792640 ACTCAGAATTTCAGCACGCG 59.207 50.000 3.53 3.53 0.00 6.01
4016 4615 2.807967 CCAACGACTCAGAATTTCAGCA 59.192 45.455 0.00 0.00 0.00 4.41
4018 4617 3.070018 AGCCAACGACTCAGAATTTCAG 58.930 45.455 0.00 0.00 0.00 3.02
4021 4620 1.537202 GCAGCCAACGACTCAGAATTT 59.463 47.619 0.00 0.00 0.00 1.82
4025 4624 1.830587 ATGGCAGCCAACGACTCAGA 61.831 55.000 20.84 0.00 36.95 3.27
4049 4733 3.245315 CGCGTGTAGGTGTAGCGC 61.245 66.667 0.00 0.00 44.19 5.92
4052 4736 1.349259 GCCAACGCGTGTAGGTGTAG 61.349 60.000 14.98 0.00 0.00 2.74
4053 4737 1.373246 GCCAACGCGTGTAGGTGTA 60.373 57.895 14.98 0.00 0.00 2.90
4054 4738 2.663852 GCCAACGCGTGTAGGTGT 60.664 61.111 14.98 0.00 0.00 4.16
4064 4748 3.112709 GGACTGAGACGCCAACGC 61.113 66.667 0.00 0.00 45.53 4.84
4077 4771 0.108804 CCACGTACGCATTCTGGACT 60.109 55.000 16.72 0.00 0.00 3.85
4078 4772 1.082117 CCCACGTACGCATTCTGGAC 61.082 60.000 20.05 0.00 0.00 4.02
4079 4773 1.216977 CCCACGTACGCATTCTGGA 59.783 57.895 20.05 0.00 0.00 3.86
4080 4774 1.079405 ACCCACGTACGCATTCTGG 60.079 57.895 16.72 14.76 0.00 3.86
4082 4776 1.740296 GCACCCACGTACGCATTCT 60.740 57.895 16.72 0.00 0.00 2.40
4132 4834 1.595357 CACCCCGACCTACTCAACC 59.405 63.158 0.00 0.00 0.00 3.77
4134 4836 0.901580 GACCACCCCGACCTACTCAA 60.902 60.000 0.00 0.00 0.00 3.02
4135 4837 1.304713 GACCACCCCGACCTACTCA 60.305 63.158 0.00 0.00 0.00 3.41
4136 4838 2.056815 GGACCACCCCGACCTACTC 61.057 68.421 0.00 0.00 0.00 2.59
4137 4839 2.038490 GGACCACCCCGACCTACT 59.962 66.667 0.00 0.00 0.00 2.57
4138 4840 2.284112 TGGACCACCCCGACCTAC 60.284 66.667 0.00 0.00 34.81 3.18
4156 4875 3.558958 CCAAATGGAAAATGGTTGGGACC 60.559 47.826 0.00 0.00 41.37 4.46
4217 4936 2.892852 AGCCAAAAATGCTAGCAACTCA 59.107 40.909 23.54 0.00 37.28 3.41
4266 4985 3.281240 GAGCCAACTCGGTCCGTA 58.719 61.111 11.88 0.00 36.97 4.02
4276 4995 2.057316 CTGATGATCGATCGAGCCAAC 58.943 52.381 28.63 22.19 33.17 3.77
4277 4996 1.603931 GCTGATGATCGATCGAGCCAA 60.604 52.381 28.63 13.19 32.96 4.52
4278 4997 0.038801 GCTGATGATCGATCGAGCCA 60.039 55.000 28.63 24.10 32.96 4.75
4279 4998 0.243365 AGCTGATGATCGATCGAGCC 59.757 55.000 28.63 19.66 36.58 4.70
4280 4999 1.338765 CAGCTGATGATCGATCGAGC 58.661 55.000 25.65 25.65 36.36 5.03
4281 5000 1.402588 CCCAGCTGATGATCGATCGAG 60.403 57.143 23.84 15.69 33.17 4.04
4282 5001 0.600057 CCCAGCTGATGATCGATCGA 59.400 55.000 21.86 21.86 33.17 3.59
4283 5002 1.013005 GCCCAGCTGATGATCGATCG 61.013 60.000 17.39 9.36 33.17 3.69
4284 5003 0.673022 GGCCCAGCTGATGATCGATC 60.673 60.000 17.39 18.72 0.00 3.69
4285 5004 1.126329 AGGCCCAGCTGATGATCGAT 61.126 55.000 17.39 0.00 0.00 3.59
4286 5005 1.752358 GAGGCCCAGCTGATGATCGA 61.752 60.000 17.39 0.00 0.00 3.59
4287 5006 1.301558 GAGGCCCAGCTGATGATCG 60.302 63.158 17.39 0.00 0.00 3.69
4309 5028 1.520666 CTCGGCCGGGACAATTACT 59.479 57.895 24.25 0.00 0.00 2.24
4361 5081 2.737252 GACCACACTACACAAAGCTAGC 59.263 50.000 6.62 6.62 0.00 3.42
4367 5087 4.215908 AGAGAGAGACCACACTACACAAA 58.784 43.478 0.00 0.00 0.00 2.83
4368 5088 3.821600 GAGAGAGAGACCACACTACACAA 59.178 47.826 0.00 0.00 0.00 3.33
4369 5089 3.413327 GAGAGAGAGACCACACTACACA 58.587 50.000 0.00 0.00 0.00 3.72
4370 5090 2.750712 GGAGAGAGAGACCACACTACAC 59.249 54.545 0.00 0.00 0.00 2.90
4371 5091 2.291024 GGGAGAGAGAGACCACACTACA 60.291 54.545 0.00 0.00 0.00 2.74
4372 5092 2.371306 GGGAGAGAGAGACCACACTAC 58.629 57.143 0.00 0.00 0.00 2.73
4427 5153 6.684131 CGTGCAGTTTCATCTACATTACATTG 59.316 38.462 0.00 0.00 0.00 2.82
4428 5154 6.593770 TCGTGCAGTTTCATCTACATTACATT 59.406 34.615 0.00 0.00 0.00 2.71
4429 5155 6.106003 TCGTGCAGTTTCATCTACATTACAT 58.894 36.000 0.00 0.00 0.00 2.29
4477 5218 1.153842 CAGAGCGATGTGTACGGCA 60.154 57.895 0.00 0.00 0.00 5.69
4478 5219 1.878522 CCAGAGCGATGTGTACGGC 60.879 63.158 0.00 0.00 0.00 5.68
4491 5232 4.662961 TGCGTGCGTGGTCCAGAG 62.663 66.667 0.00 0.00 0.00 3.35
4578 5323 2.237392 AGGGTGATGGAAAGCTACTCAC 59.763 50.000 0.00 0.00 36.38 3.51
4641 5386 3.110178 GGCTCGTGGTTCCGTTCG 61.110 66.667 0.00 0.00 0.00 3.95
4647 5392 4.681978 AGTGGCGGCTCGTGGTTC 62.682 66.667 11.43 0.00 0.00 3.62
4801 5588 4.349048 ACCTGCACCATCAGATATGTATGT 59.651 41.667 0.00 0.00 36.19 2.29
4805 5592 3.200605 TCAACCTGCACCATCAGATATGT 59.799 43.478 0.00 0.00 36.19 2.29
4806 5593 3.812262 TCAACCTGCACCATCAGATATG 58.188 45.455 0.00 0.00 36.19 1.78
4807 5594 3.181447 CCTCAACCTGCACCATCAGATAT 60.181 47.826 0.00 0.00 36.19 1.63
4808 5595 2.171237 CCTCAACCTGCACCATCAGATA 59.829 50.000 0.00 0.00 36.19 1.98
4809 5596 1.064906 CCTCAACCTGCACCATCAGAT 60.065 52.381 0.00 0.00 36.19 2.90
4810 5597 0.325933 CCTCAACCTGCACCATCAGA 59.674 55.000 0.00 0.00 36.19 3.27
4811 5598 0.679002 CCCTCAACCTGCACCATCAG 60.679 60.000 0.00 0.00 0.00 2.90
4855 5642 4.278513 TTGAAGGGCCCCACGTGG 62.279 66.667 28.26 28.26 0.00 4.94
5062 5849 0.543749 GGAAGTCCTGGACCATGAGG 59.456 60.000 22.81 0.00 42.21 3.86
5146 5933 3.807538 CGATGGACGACGACGGGT 61.808 66.667 12.58 0.00 45.77 5.28
5231 6022 5.041191 ACTGTCACATGTTTCTTCTTCCT 57.959 39.130 0.00 0.00 0.00 3.36
5269 6060 4.381825 CCCGCTTTCATTCATTCATTTCCA 60.382 41.667 0.00 0.00 0.00 3.53
5288 6079 2.851263 TGATGGTGTATATTCCCCGC 57.149 50.000 0.00 0.00 0.00 6.13
5332 6123 4.067896 GCTACTTCACCCATGATACATGG 58.932 47.826 19.97 19.97 38.88 3.66
5376 6167 2.059541 GTCATAGTTAAGATCGCGGCC 58.940 52.381 6.13 0.00 0.00 6.13
5388 6179 3.604875 ATTTCGGTCACGGTCATAGTT 57.395 42.857 0.00 0.00 41.39 2.24
5401 6192 1.801771 TGCGATCGAACAAATTTCGGT 59.198 42.857 21.57 0.00 41.78 4.69
5416 6207 7.534085 TGACGTAAAATTAGAAGAATGCGAT 57.466 32.000 0.00 0.00 0.00 4.58
5469 6260 3.297736 CCCTCCTTCGTACCAGTTCTAT 58.702 50.000 0.00 0.00 0.00 1.98
5482 6279 1.909700 TCAAACATGTGCCCTCCTTC 58.090 50.000 0.00 0.00 0.00 3.46
5508 6305 2.616960 TGACGGATCGAGATTGTTTGG 58.383 47.619 0.00 0.00 0.00 3.28
5513 6310 5.222631 TGATTGTATGACGGATCGAGATTG 58.777 41.667 0.00 0.00 0.00 2.67
5515 6312 4.762251 TCTGATTGTATGACGGATCGAGAT 59.238 41.667 0.00 0.00 0.00 2.75
5516 6313 4.134563 TCTGATTGTATGACGGATCGAGA 58.865 43.478 0.00 0.00 0.00 4.04
5517 6314 4.214332 TCTCTGATTGTATGACGGATCGAG 59.786 45.833 0.00 0.00 0.00 4.04
5518 6315 4.023963 GTCTCTGATTGTATGACGGATCGA 60.024 45.833 0.00 0.00 0.00 3.59
5519 6316 4.222886 GTCTCTGATTGTATGACGGATCG 58.777 47.826 0.00 0.00 0.00 3.69
5524 6321 3.801114 TGGGTCTCTGATTGTATGACG 57.199 47.619 0.00 0.00 0.00 4.35
5556 6353 0.395311 AGGGAGATGCCATTGTGCAG 60.395 55.000 0.00 0.00 45.93 4.41
5559 6356 1.843368 AACAGGGAGATGCCATTGTG 58.157 50.000 0.00 0.00 36.49 3.33
5561 6358 4.096984 GTCTTAAACAGGGAGATGCCATTG 59.903 45.833 0.00 0.00 38.95 2.82
5565 6362 3.636153 AGTCTTAAACAGGGAGATGCC 57.364 47.619 0.00 0.00 0.00 4.40
5569 6369 4.899457 TCAGACAAGTCTTAAACAGGGAGA 59.101 41.667 0.00 0.00 37.98 3.71
5571 6371 5.130477 AGTTCAGACAAGTCTTAAACAGGGA 59.870 40.000 19.37 4.19 37.98 4.20
5605 6405 1.065410 TTTCCTCCCTGCCCTTCACA 61.065 55.000 0.00 0.00 0.00 3.58
5634 6480 3.312697 AGGTTTGCAAAGACGAGAAAGTC 59.687 43.478 13.26 0.00 41.23 3.01
5642 6488 3.425193 GCATTTACAGGTTTGCAAAGACG 59.575 43.478 13.26 6.12 35.22 4.18
5644 6490 4.662468 TGCATTTACAGGTTTGCAAAGA 57.338 36.364 13.26 0.00 41.76 2.52
5681 6539 2.325082 GCAGGCAATTGACGACCGT 61.325 57.895 10.34 0.00 0.00 4.83
5690 6555 1.829222 CCAAATCTCCAGCAGGCAATT 59.171 47.619 0.00 0.00 33.74 2.32
5693 6558 0.112995 AACCAAATCTCCAGCAGGCA 59.887 50.000 0.00 0.00 33.74 4.75
5694 6559 0.529378 CAACCAAATCTCCAGCAGGC 59.471 55.000 0.00 0.00 33.74 4.85
5743 6624 3.008923 TGAATGTGATGCTGGTGGTCTAA 59.991 43.478 0.00 0.00 0.00 2.10
5744 6625 2.571202 TGAATGTGATGCTGGTGGTCTA 59.429 45.455 0.00 0.00 0.00 2.59
5799 6682 6.687081 TCCGGGTAAATTATGATGAAACAC 57.313 37.500 0.00 0.00 0.00 3.32
5802 6685 7.254966 CGATGTTCCGGGTAAATTATGATGAAA 60.255 37.037 0.00 0.00 0.00 2.69
5804 6687 5.699001 CGATGTTCCGGGTAAATTATGATGA 59.301 40.000 0.00 0.00 0.00 2.92
5921 6807 7.042254 CCTTATGTACTCTTTTGGCGGTAATAC 60.042 40.741 0.00 0.00 0.00 1.89
5964 6850 1.466167 CAAGCCTGTGATCGTTTGGAG 59.534 52.381 0.00 0.00 0.00 3.86
5993 6879 2.135139 CAGCGCTTGTAGTTCACTCAA 58.865 47.619 7.50 0.00 0.00 3.02
6010 6896 4.372656 GTGTCATCTACCTGATAACCAGC 58.627 47.826 0.00 0.00 41.57 4.85
6020 6906 3.830755 AGGTGTAAACGTGTCATCTACCT 59.169 43.478 0.00 0.00 0.00 3.08
6063 6949 2.859165 AACCTCGAGCTGGATCAAAA 57.141 45.000 6.99 0.00 0.00 2.44
6101 6987 2.553904 CCTCCTGATGTTGCTCAAAGGT 60.554 50.000 11.27 0.00 36.19 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.