Multiple sequence alignment - TraesCS2D01G109400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G109400 chr2D 100.000 3456 0 0 1 3456 60770075 60766620 0.000000e+00 6383.0
1 TraesCS2D01G109400 chr2D 84.755 1817 227 29 878 2670 60785650 60783860 0.000000e+00 1775.0
2 TraesCS2D01G109400 chr2D 87.170 1286 146 8 965 2239 60780768 60779491 0.000000e+00 1443.0
3 TraesCS2D01G109400 chr2D 84.524 840 99 17 2203 3026 60782257 60781433 0.000000e+00 802.0
4 TraesCS2D01G109400 chr2D 85.211 142 17 3 3113 3252 60781982 60781843 3.600000e-30 143.0
5 TraesCS2D01G109400 chr2A 95.529 1767 64 10 653 2406 61304458 61302694 0.000000e+00 2811.0
6 TraesCS2D01G109400 chr2A 83.871 2170 252 55 984 3102 61351187 61349065 0.000000e+00 1978.0
7 TraesCS2D01G109400 chr2A 85.455 990 117 18 1636 2609 61366271 61365293 0.000000e+00 1005.0
8 TraesCS2D01G109400 chr2A 93.994 616 27 7 2637 3247 61301882 61301272 0.000000e+00 924.0
9 TraesCS2D01G109400 chr2A 83.137 848 105 17 2203 3026 61352693 61351860 0.000000e+00 739.0
10 TraesCS2D01G109400 chr2A 84.149 776 100 15 878 1642 61367503 61366740 0.000000e+00 730.0
11 TraesCS2D01G109400 chr2A 96.218 238 7 2 2401 2637 61302507 61302271 4.180000e-104 388.0
12 TraesCS2D01G109400 chr2A 91.038 212 7 7 3256 3456 61298105 61297895 3.400000e-70 276.0
13 TraesCS2D01G109400 chr2A 83.391 289 22 8 645 920 61304521 61304246 9.580000e-61 244.0
14 TraesCS2D01G109400 chr2B 90.868 1752 134 13 725 2464 95241302 95239565 0.000000e+00 2326.0
15 TraesCS2D01G109400 chr2B 86.291 1510 182 18 965 2459 95536948 95535449 0.000000e+00 1618.0
16 TraesCS2D01G109400 chr2B 86.357 645 76 5 1241 1879 95495231 95494593 0.000000e+00 693.0
17 TraesCS2D01G109400 chr2B 86.347 542 70 2 1874 2412 95489480 95488940 3.840000e-164 588.0
18 TraesCS2D01G109400 chr2B 86.879 282 30 7 189 465 95271574 95271295 3.350000e-80 309.0
19 TraesCS2D01G109400 chr2B 91.071 224 18 1 984 1207 95501376 95501155 5.610000e-78 302.0
20 TraesCS2D01G109400 chr2B 86.992 123 14 1 3246 3366 779840992 779840870 1.670000e-28 137.0
21 TraesCS2D01G109400 chr2B 95.122 82 4 0 645 726 95241644 95241563 2.800000e-26 130.0
22 TraesCS2D01G109400 chr2B 95.918 49 2 0 1197 1245 95500991 95500943 2.860000e-11 80.5
23 TraesCS2D01G109400 chr2B 87.931 58 4 2 801 855 95501945 95501888 8.010000e-07 65.8
24 TraesCS2D01G109400 chr5D 89.785 186 19 0 4 189 386176574 386176389 4.460000e-59 239.0
25 TraesCS2D01G109400 chr5D 85.714 189 27 0 1 189 445066850 445067038 2.100000e-47 200.0
26 TraesCS2D01G109400 chr6D 87.113 194 24 1 4 197 138970360 138970168 5.810000e-53 219.0
27 TraesCS2D01G109400 chr5A 88.043 184 22 0 4 187 409330908 409330725 5.810000e-53 219.0
28 TraesCS2D01G109400 chr5A 86.528 193 24 2 4 195 94470653 94470462 9.720000e-51 211.0
29 TraesCS2D01G109400 chr6A 87.368 190 23 1 6 195 572591850 572591662 2.090000e-52 217.0
30 TraesCS2D01G109400 chr6A 86.458 192 25 1 4 195 572592867 572592677 3.500000e-50 209.0
31 TraesCS2D01G109400 chr3B 86.458 192 26 0 4 195 106063949 106064140 9.720000e-51 211.0
32 TraesCS2D01G109400 chr7D 85.714 189 27 0 1 189 233198541 233198729 2.100000e-47 200.0
33 TraesCS2D01G109400 chr7D 88.462 130 14 1 466 594 621635829 621635958 4.620000e-34 156.0
34 TraesCS2D01G109400 chr1D 90.000 130 12 1 466 594 476668948 476669077 2.130000e-37 167.0
35 TraesCS2D01G109400 chr1D 86.111 108 14 1 3247 3353 450464672 450464779 7.840000e-22 115.0
36 TraesCS2D01G109400 chr1D 90.123 81 7 1 3283 3363 400068085 400068164 1.700000e-18 104.0
37 TraesCS2D01G109400 chr3D 89.922 129 12 1 466 593 518354291 518354419 7.670000e-37 165.0
38 TraesCS2D01G109400 chr1A 89.844 128 12 1 467 593 510532067 510532194 2.760000e-36 163.0
39 TraesCS2D01G109400 chr7B 83.465 127 19 2 3240 3366 174672942 174672818 2.180000e-22 117.0
40 TraesCS2D01G109400 chr4B 84.762 105 16 0 3253 3357 642724295 642724191 4.720000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G109400 chr2D 60766620 60770075 3455 True 6383.00 6383 100.000 1 3456 1 chr2D.!!$R1 3455
1 TraesCS2D01G109400 chr2D 60779491 60785650 6159 True 1040.75 1775 85.415 878 3252 4 chr2D.!!$R2 2374
2 TraesCS2D01G109400 chr2A 61349065 61352693 3628 True 1358.50 1978 83.504 984 3102 2 chr2A.!!$R2 2118
3 TraesCS2D01G109400 chr2A 61297895 61304521 6626 True 928.60 2811 92.034 645 3456 5 chr2A.!!$R1 2811
4 TraesCS2D01G109400 chr2A 61365293 61367503 2210 True 867.50 1005 84.802 878 2609 2 chr2A.!!$R3 1731
5 TraesCS2D01G109400 chr2B 95535449 95536948 1499 True 1618.00 1618 86.291 965 2459 1 chr2B.!!$R4 1494
6 TraesCS2D01G109400 chr2B 95239565 95241644 2079 True 1228.00 2326 92.995 645 2464 2 chr2B.!!$R6 1819
7 TraesCS2D01G109400 chr2B 95494593 95495231 638 True 693.00 693 86.357 1241 1879 1 chr2B.!!$R3 638
8 TraesCS2D01G109400 chr2B 95488940 95489480 540 True 588.00 588 86.347 1874 2412 1 chr2B.!!$R2 538
9 TraesCS2D01G109400 chr6A 572591662 572592867 1205 True 213.00 217 86.913 4 195 2 chr6A.!!$R1 191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.032952 CGATCCCCCTTATTCGCGAA 59.967 55.0 25.66 25.66 0.0 4.70 F
305 306 0.036732 CCCCTTACAGCAGTGCTTCA 59.963 55.0 16.89 2.65 36.4 3.02 F
530 531 0.179067 GTCCACCGTGTGTTGAGGAA 60.179 55.0 0.00 0.00 0.0 3.36 F
2109 3135 0.725686 CGGTGCAGAATCTCAAGCTG 59.274 55.0 0.00 0.00 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 2131 2.048222 CGTCCACACCGCTGATGT 60.048 61.111 0.00 0.0 0.00 3.06 R
1638 2661 2.279851 CAGACGCCGTGGTTGTCA 60.280 61.111 0.00 0.0 35.09 3.58 R
2215 3247 2.747822 GCTGATGCGTCACTGCCAG 61.748 63.158 3.97 0.0 0.00 4.85 R
3330 11196 4.985413 TGCAAAATAGTGCTAGTGAATGC 58.015 39.130 0.00 0.0 45.17 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.682155 GGGTGAAGCTGAAGTAGGAG 57.318 55.000 0.00 0.00 0.00 3.69
26 27 3.810310 AGCTGAAGTAGGAGTATGTGC 57.190 47.619 0.00 0.00 0.00 4.57
58 59 3.436704 TGATCCGTTCATGAGAAACTTGC 59.563 43.478 0.00 0.00 35.08 4.01
60 61 3.067106 TCCGTTCATGAGAAACTTGCTC 58.933 45.455 0.00 0.00 35.08 4.26
67 68 3.179443 TGAGAAACTTGCTCGACAACT 57.821 42.857 0.00 0.00 35.15 3.16
70 71 1.940613 GAAACTTGCTCGACAACTGGT 59.059 47.619 0.00 0.00 33.68 4.00
79 80 3.377485 GCTCGACAACTGGTATCTAGTCA 59.623 47.826 0.00 0.00 0.00 3.41
86 87 8.188799 CGACAACTGGTATCTAGTCAAATTAGA 58.811 37.037 0.00 0.00 0.00 2.10
87 88 9.522804 GACAACTGGTATCTAGTCAAATTAGAG 57.477 37.037 0.00 0.00 31.17 2.43
117 118 8.039603 TGTTGTACTAGACTTAATTTGCATGG 57.960 34.615 0.00 0.00 0.00 3.66
130 131 5.988310 ATTTGCATGGTATGTATGGATGG 57.012 39.130 0.00 0.00 0.00 3.51
139 140 4.275936 GGTATGTATGGATGGTTTGTGCTC 59.724 45.833 0.00 0.00 0.00 4.26
169 170 4.876125 TCTGAACTCTGATGAATATCGGC 58.124 43.478 0.00 0.00 39.17 5.54
172 173 1.273606 ACTCTGATGAATATCGGCCGG 59.726 52.381 27.83 6.80 39.17 6.13
177 178 2.158885 TGATGAATATCGGCCGGTTTGA 60.159 45.455 27.83 10.10 36.04 2.69
189 190 3.119779 GGCCGGTTTGAATGAATTTCGTA 60.120 43.478 1.90 0.00 37.13 3.43
192 193 4.143073 CCGGTTTGAATGAATTTCGTACGA 60.143 41.667 15.28 15.28 37.13 3.43
197 198 6.729391 TTGAATGAATTTCGTACGATTGGA 57.271 33.333 20.27 0.08 37.13 3.53
198 199 6.918892 TGAATGAATTTCGTACGATTGGAT 57.081 33.333 20.27 8.31 37.13 3.41
200 201 5.673337 ATGAATTTCGTACGATTGGATGG 57.327 39.130 20.27 0.00 0.00 3.51
201 202 3.311322 TGAATTTCGTACGATTGGATGGC 59.689 43.478 20.27 7.84 0.00 4.40
202 203 1.282817 TTTCGTACGATTGGATGGCG 58.717 50.000 20.27 0.00 0.00 5.69
204 205 2.594962 CGTACGATTGGATGGCGCC 61.595 63.158 22.73 22.73 0.00 6.53
205 206 2.110213 TACGATTGGATGGCGCCC 59.890 61.111 26.77 9.46 0.00 6.13
209 210 4.569180 ATTGGATGGCGCCCTCCG 62.569 66.667 35.96 0.00 40.75 4.63
217 218 4.241555 GCGCCCTCCGACATCCAT 62.242 66.667 0.00 0.00 40.02 3.41
219 220 2.911143 GCCCTCCGACATCCATGT 59.089 61.111 0.00 0.00 45.16 3.21
231 232 1.684391 TCCATGTCCGTGGACCGAT 60.684 57.895 16.12 1.48 43.20 4.18
232 233 1.227263 CCATGTCCGTGGACCGATC 60.227 63.158 16.12 0.00 43.97 3.69
233 234 1.227263 CATGTCCGTGGACCGATCC 60.227 63.158 16.12 0.00 46.48 3.36
234 235 2.432300 ATGTCCGTGGACCGATCCC 61.432 63.158 16.12 0.00 45.59 3.85
235 236 3.846430 GTCCGTGGACCGATCCCC 61.846 72.222 7.86 0.00 45.59 4.81
238 239 3.081409 CGTGGACCGATCCCCCTT 61.081 66.667 0.00 0.00 45.59 3.95
239 240 1.759299 CGTGGACCGATCCCCCTTA 60.759 63.158 0.00 0.00 45.59 2.69
240 241 1.119574 CGTGGACCGATCCCCCTTAT 61.120 60.000 0.00 0.00 45.59 1.73
241 242 1.137697 GTGGACCGATCCCCCTTATT 58.862 55.000 0.00 0.00 45.59 1.40
242 243 1.071857 GTGGACCGATCCCCCTTATTC 59.928 57.143 0.00 0.00 45.59 1.75
243 244 0.320697 GGACCGATCCCCCTTATTCG 59.679 60.000 0.00 0.00 39.39 3.34
244 245 0.320508 GACCGATCCCCCTTATTCGC 60.321 60.000 0.00 0.00 0.00 4.70
245 246 1.374252 CCGATCCCCCTTATTCGCG 60.374 63.158 0.00 0.00 0.00 5.87
246 247 1.663739 CGATCCCCCTTATTCGCGA 59.336 57.895 3.71 3.71 0.00 5.87
247 248 0.032952 CGATCCCCCTTATTCGCGAA 59.967 55.000 25.66 25.66 0.00 4.70
248 249 1.509703 GATCCCCCTTATTCGCGAAC 58.490 55.000 26.00 3.09 0.00 3.95
249 250 0.249741 ATCCCCCTTATTCGCGAACG 60.250 55.000 26.00 15.09 42.01 3.95
250 251 1.885850 CCCCCTTATTCGCGAACGG 60.886 63.158 26.00 22.68 40.63 4.44
252 253 1.149964 CCCCTTATTCGCGAACGGAC 61.150 60.000 26.00 0.00 40.63 4.79
253 254 1.477030 CCCTTATTCGCGAACGGACG 61.477 60.000 26.00 10.51 40.63 4.79
262 263 4.060038 GAACGGACGCGGGAGGAA 62.060 66.667 12.47 0.00 0.00 3.36
263 264 3.578515 GAACGGACGCGGGAGGAAA 62.579 63.158 12.47 0.00 0.00 3.13
264 265 2.847435 GAACGGACGCGGGAGGAAAT 62.847 60.000 12.47 0.00 0.00 2.17
265 266 2.125269 CGGACGCGGGAGGAAATT 60.125 61.111 12.47 0.00 0.00 1.82
268 269 1.808891 CGGACGCGGGAGGAAATTTAT 60.809 52.381 12.47 0.00 0.00 1.40
270 271 2.686405 GGACGCGGGAGGAAATTTATTT 59.314 45.455 12.47 0.00 0.00 1.40
271 272 3.488553 GGACGCGGGAGGAAATTTATTTG 60.489 47.826 12.47 0.00 0.00 2.32
272 273 3.086282 ACGCGGGAGGAAATTTATTTGT 58.914 40.909 12.47 0.00 0.00 2.83
274 275 3.857093 CGCGGGAGGAAATTTATTTGTTG 59.143 43.478 0.00 0.00 0.00 3.33
275 276 4.617298 CGCGGGAGGAAATTTATTTGTTGT 60.617 41.667 0.00 0.00 0.00 3.32
276 277 4.862574 GCGGGAGGAAATTTATTTGTTGTC 59.137 41.667 0.00 0.00 0.00 3.18
277 278 5.092781 CGGGAGGAAATTTATTTGTTGTCG 58.907 41.667 0.00 0.00 0.00 4.35
278 279 5.335348 CGGGAGGAAATTTATTTGTTGTCGT 60.335 40.000 0.00 0.00 0.00 4.34
279 280 6.452242 GGGAGGAAATTTATTTGTTGTCGTT 58.548 36.000 0.00 0.00 0.00 3.85
280 281 6.364976 GGGAGGAAATTTATTTGTTGTCGTTG 59.635 38.462 0.00 0.00 0.00 4.10
281 282 6.364976 GGAGGAAATTTATTTGTTGTCGTTGG 59.635 38.462 0.00 0.00 0.00 3.77
282 283 7.045126 AGGAAATTTATTTGTTGTCGTTGGA 57.955 32.000 0.00 0.00 0.00 3.53
283 284 7.145323 AGGAAATTTATTTGTTGTCGTTGGAG 58.855 34.615 0.00 0.00 0.00 3.86
284 285 7.013846 AGGAAATTTATTTGTTGTCGTTGGAGA 59.986 33.333 0.00 0.00 0.00 3.71
285 286 7.812669 GGAAATTTATTTGTTGTCGTTGGAGAT 59.187 33.333 0.00 0.00 0.00 2.75
286 287 8.742554 AAATTTATTTGTTGTCGTTGGAGATC 57.257 30.769 0.00 0.00 0.00 2.75
287 288 5.873179 TTATTTGTTGTCGTTGGAGATCC 57.127 39.130 0.00 0.00 0.00 3.36
288 289 2.178912 TTGTTGTCGTTGGAGATCCC 57.821 50.000 0.00 0.00 34.29 3.85
289 290 0.323629 TGTTGTCGTTGGAGATCCCC 59.676 55.000 0.00 0.00 34.29 4.81
290 291 0.613777 GTTGTCGTTGGAGATCCCCT 59.386 55.000 0.00 0.00 34.29 4.79
291 292 1.003233 GTTGTCGTTGGAGATCCCCTT 59.997 52.381 0.00 0.00 34.29 3.95
293 294 1.829222 TGTCGTTGGAGATCCCCTTAC 59.171 52.381 0.00 0.00 34.29 2.34
296 297 1.473434 CGTTGGAGATCCCCTTACAGC 60.473 57.143 0.00 0.00 34.29 4.40
298 299 1.500474 TGGAGATCCCCTTACAGCAG 58.500 55.000 0.00 0.00 34.29 4.24
299 300 1.273838 TGGAGATCCCCTTACAGCAGT 60.274 52.381 0.00 0.00 34.29 4.40
300 301 1.139853 GGAGATCCCCTTACAGCAGTG 59.860 57.143 0.00 0.00 0.00 3.66
302 303 0.543749 GATCCCCTTACAGCAGTGCT 59.456 55.000 13.14 13.14 40.77 4.40
303 304 0.995024 ATCCCCTTACAGCAGTGCTT 59.005 50.000 16.89 9.85 36.40 3.91
304 305 0.324943 TCCCCTTACAGCAGTGCTTC 59.675 55.000 16.89 0.00 36.40 3.86
305 306 0.036732 CCCCTTACAGCAGTGCTTCA 59.963 55.000 16.89 2.65 36.40 3.02
306 307 1.545428 CCCCTTACAGCAGTGCTTCAA 60.545 52.381 16.89 11.27 36.40 2.69
307 308 1.808945 CCCTTACAGCAGTGCTTCAAG 59.191 52.381 16.89 19.67 36.40 3.02
308 309 1.808945 CCTTACAGCAGTGCTTCAAGG 59.191 52.381 27.95 27.95 39.24 3.61
309 310 1.808945 CTTACAGCAGTGCTTCAAGGG 59.191 52.381 16.89 5.54 36.40 3.95
310 311 0.606401 TACAGCAGTGCTTCAAGGGC 60.606 55.000 16.89 0.00 36.40 5.19
311 312 1.900016 CAGCAGTGCTTCAAGGGCA 60.900 57.895 16.89 0.00 36.40 5.36
312 313 1.076192 AGCAGTGCTTCAAGGGCAT 59.924 52.632 13.14 0.00 41.86 4.40
313 314 0.964358 AGCAGTGCTTCAAGGGCATC 60.964 55.000 13.14 0.00 41.86 3.91
314 315 1.941999 GCAGTGCTTCAAGGGCATCC 61.942 60.000 8.18 0.00 41.86 3.51
315 316 0.609957 CAGTGCTTCAAGGGCATCCA 60.610 55.000 0.00 0.00 41.86 3.41
316 317 0.323178 AGTGCTTCAAGGGCATCCAG 60.323 55.000 0.00 0.00 41.86 3.86
329 330 3.893326 GCATCCAGCCAAACCTTTATT 57.107 42.857 0.00 0.00 37.23 1.40
330 331 3.785486 GCATCCAGCCAAACCTTTATTC 58.215 45.455 0.00 0.00 37.23 1.75
331 332 3.448660 GCATCCAGCCAAACCTTTATTCT 59.551 43.478 0.00 0.00 37.23 2.40
332 333 4.081476 GCATCCAGCCAAACCTTTATTCTT 60.081 41.667 0.00 0.00 37.23 2.52
333 334 5.413499 CATCCAGCCAAACCTTTATTCTTG 58.587 41.667 0.00 0.00 0.00 3.02
334 335 3.258123 TCCAGCCAAACCTTTATTCTTGC 59.742 43.478 0.00 0.00 0.00 4.01
335 336 3.244976 CAGCCAAACCTTTATTCTTGCG 58.755 45.455 0.00 0.00 0.00 4.85
336 337 2.231235 AGCCAAACCTTTATTCTTGCGG 59.769 45.455 0.00 0.00 0.00 5.69
337 338 2.230266 GCCAAACCTTTATTCTTGCGGA 59.770 45.455 0.00 0.00 0.00 5.54
355 356 2.554032 CGGAGCCAAGTTCAAACAAGAT 59.446 45.455 0.00 0.00 0.00 2.40
357 358 4.396166 CGGAGCCAAGTTCAAACAAGATAT 59.604 41.667 0.00 0.00 0.00 1.63
358 359 5.106157 CGGAGCCAAGTTCAAACAAGATATT 60.106 40.000 0.00 0.00 0.00 1.28
359 360 6.570378 CGGAGCCAAGTTCAAACAAGATATTT 60.570 38.462 0.00 0.00 0.00 1.40
360 361 7.154656 GGAGCCAAGTTCAAACAAGATATTTT 58.845 34.615 0.00 0.00 0.00 1.82
362 363 6.424812 AGCCAAGTTCAAACAAGATATTTTGC 59.575 34.615 5.92 0.00 33.50 3.68
363 364 6.424812 GCCAAGTTCAAACAAGATATTTTGCT 59.575 34.615 5.92 0.00 33.50 3.91
364 365 7.041848 GCCAAGTTCAAACAAGATATTTTGCTT 60.042 33.333 5.92 0.00 33.50 3.91
366 367 9.252962 CAAGTTCAAACAAGATATTTTGCTTCT 57.747 29.630 5.92 0.00 33.50 2.85
367 368 8.807667 AGTTCAAACAAGATATTTTGCTTCTG 57.192 30.769 5.92 0.00 33.50 3.02
369 370 9.415544 GTTCAAACAAGATATTTTGCTTCTGAT 57.584 29.630 5.92 0.00 33.50 2.90
374 375 8.114331 ACAAGATATTTTGCTTCTGATTCACA 57.886 30.769 5.92 0.00 0.00 3.58
375 376 8.025445 ACAAGATATTTTGCTTCTGATTCACAC 58.975 33.333 5.92 0.00 0.00 3.82
376 377 7.692460 AGATATTTTGCTTCTGATTCACACA 57.308 32.000 0.00 0.00 0.00 3.72
377 378 7.759465 AGATATTTTGCTTCTGATTCACACAG 58.241 34.615 0.00 0.00 36.80 3.66
378 379 3.631145 TTTGCTTCTGATTCACACAGC 57.369 42.857 0.00 1.60 35.61 4.40
379 380 1.527034 TGCTTCTGATTCACACAGCC 58.473 50.000 0.00 0.00 35.61 4.85
380 381 1.202794 TGCTTCTGATTCACACAGCCA 60.203 47.619 0.00 0.00 35.61 4.75
381 382 1.881973 GCTTCTGATTCACACAGCCAA 59.118 47.619 0.00 0.00 35.61 4.52
382 383 2.351157 GCTTCTGATTCACACAGCCAAC 60.351 50.000 0.00 0.00 35.61 3.77
383 384 1.896220 TCTGATTCACACAGCCAACC 58.104 50.000 0.00 0.00 35.61 3.77
384 385 0.518636 CTGATTCACACAGCCAACCG 59.481 55.000 0.00 0.00 0.00 4.44
385 386 1.210155 GATTCACACAGCCAACCGC 59.790 57.895 0.00 0.00 37.98 5.68
391 392 2.192861 CACAGCCAACCGCAAAGGA 61.193 57.895 0.00 0.00 45.00 3.36
392 393 1.228552 ACAGCCAACCGCAAAGGAT 60.229 52.632 0.00 0.00 45.00 3.24
394 395 1.340991 ACAGCCAACCGCAAAGGATAT 60.341 47.619 0.00 0.00 45.00 1.63
395 396 1.066002 CAGCCAACCGCAAAGGATATG 59.934 52.381 0.00 0.00 45.00 1.78
397 398 1.956477 GCCAACCGCAAAGGATATGAT 59.044 47.619 0.00 0.00 45.00 2.45
398 399 2.287788 GCCAACCGCAAAGGATATGATG 60.288 50.000 0.00 0.00 45.00 3.07
400 401 3.213506 CAACCGCAAAGGATATGATGGA 58.786 45.455 0.00 0.00 45.00 3.41
402 403 4.908601 ACCGCAAAGGATATGATGGATA 57.091 40.909 0.00 0.00 45.00 2.59
403 404 5.441718 ACCGCAAAGGATATGATGGATAT 57.558 39.130 0.00 0.00 45.00 1.63
404 405 5.188434 ACCGCAAAGGATATGATGGATATG 58.812 41.667 0.00 0.00 45.00 1.78
407 408 6.204301 CCGCAAAGGATATGATGGATATGATC 59.796 42.308 0.00 0.00 45.00 2.92
408 409 6.990939 CGCAAAGGATATGATGGATATGATCT 59.009 38.462 0.00 0.00 0.00 2.75
409 410 7.498239 CGCAAAGGATATGATGGATATGATCTT 59.502 37.037 0.00 0.00 0.00 2.40
410 411 8.622157 GCAAAGGATATGATGGATATGATCTTG 58.378 37.037 0.00 0.00 0.00 3.02
411 412 9.121658 CAAAGGATATGATGGATATGATCTTGG 57.878 37.037 0.00 0.00 0.00 3.61
412 413 7.390013 AGGATATGATGGATATGATCTTGGG 57.610 40.000 0.00 0.00 0.00 4.12
414 415 3.726557 TGATGGATATGATCTTGGGCC 57.273 47.619 0.00 0.00 0.00 5.80
415 416 2.988148 TGATGGATATGATCTTGGGCCA 59.012 45.455 0.00 0.00 0.00 5.36
416 417 3.398629 TGATGGATATGATCTTGGGCCAA 59.601 43.478 19.68 19.68 0.00 4.52
417 418 4.044952 TGATGGATATGATCTTGGGCCAAT 59.955 41.667 21.25 5.59 0.00 3.16
418 419 3.770046 TGGATATGATCTTGGGCCAATG 58.230 45.455 21.25 13.89 0.00 2.82
420 421 3.760684 GGATATGATCTTGGGCCAATGTC 59.239 47.826 21.25 19.76 0.00 3.06
421 422 4.508047 GGATATGATCTTGGGCCAATGTCT 60.508 45.833 21.25 12.18 0.00 3.41
422 423 2.905415 TGATCTTGGGCCAATGTCTT 57.095 45.000 21.25 2.79 0.00 3.01
423 424 3.173953 TGATCTTGGGCCAATGTCTTT 57.826 42.857 21.25 0.90 0.00 2.52
424 425 3.091545 TGATCTTGGGCCAATGTCTTTC 58.908 45.455 21.25 10.66 0.00 2.62
425 426 1.533625 TCTTGGGCCAATGTCTTTCG 58.466 50.000 21.25 5.42 0.00 3.46
427 428 0.539438 TTGGGCCAATGTCTTTCGCT 60.539 50.000 16.66 0.00 0.00 4.93
428 429 1.243342 TGGGCCAATGTCTTTCGCTG 61.243 55.000 2.13 0.00 0.00 5.18
430 431 1.098050 GGCCAATGTCTTTCGCTGAT 58.902 50.000 0.00 0.00 0.00 2.90
432 433 2.523015 GCCAATGTCTTTCGCTGATTG 58.477 47.619 0.00 0.00 0.00 2.67
436 437 5.677091 GCCAATGTCTTTCGCTGATTGTAAT 60.677 40.000 0.00 0.00 0.00 1.89
437 438 5.967674 CCAATGTCTTTCGCTGATTGTAATC 59.032 40.000 0.00 0.00 35.97 1.75
439 440 6.992063 ATGTCTTTCGCTGATTGTAATCTT 57.008 33.333 6.21 0.00 36.39 2.40
441 442 6.166279 TGTCTTTCGCTGATTGTAATCTTCT 58.834 36.000 6.21 0.00 36.39 2.85
442 443 6.650807 TGTCTTTCGCTGATTGTAATCTTCTT 59.349 34.615 6.21 0.00 36.39 2.52
443 444 7.817478 TGTCTTTCGCTGATTGTAATCTTCTTA 59.183 33.333 6.21 0.00 36.39 2.10
444 445 8.324567 GTCTTTCGCTGATTGTAATCTTCTTAG 58.675 37.037 6.21 0.00 36.39 2.18
445 446 8.251026 TCTTTCGCTGATTGTAATCTTCTTAGA 58.749 33.333 6.21 0.00 36.39 2.10
447 448 6.273825 TCGCTGATTGTAATCTTCTTAGACC 58.726 40.000 6.21 0.00 36.39 3.85
448 449 6.096987 TCGCTGATTGTAATCTTCTTAGACCT 59.903 38.462 6.21 0.00 36.39 3.85
449 450 6.758886 CGCTGATTGTAATCTTCTTAGACCTT 59.241 38.462 6.21 0.00 36.39 3.50
488 489 4.767478 TGTATAGTCGTACAGAGAGCACT 58.233 43.478 0.00 0.00 31.33 4.40
489 490 5.910614 TGTATAGTCGTACAGAGAGCACTA 58.089 41.667 0.00 0.00 31.33 2.74
490 491 5.752472 TGTATAGTCGTACAGAGAGCACTAC 59.248 44.000 0.00 0.00 31.33 2.73
491 492 3.337694 AGTCGTACAGAGAGCACTACT 57.662 47.619 0.00 0.00 0.00 2.57
494 495 4.081531 AGTCGTACAGAGAGCACTACTACT 60.082 45.833 0.00 0.00 0.00 2.57
495 496 4.033129 GTCGTACAGAGAGCACTACTACTG 59.967 50.000 0.00 0.00 38.25 2.74
496 497 3.933955 CGTACAGAGAGCACTACTACTGT 59.066 47.826 8.02 8.02 43.67 3.55
498 499 5.754406 CGTACAGAGAGCACTACTACTGTAT 59.246 44.000 11.65 0.00 43.60 2.29
499 500 6.292435 CGTACAGAGAGCACTACTACTGTATG 60.292 46.154 11.65 12.01 43.60 2.39
500 501 4.884744 ACAGAGAGCACTACTACTGTATGG 59.115 45.833 0.00 0.00 41.34 2.74
501 502 3.886505 AGAGAGCACTACTACTGTATGGC 59.113 47.826 0.00 0.00 0.00 4.40
502 503 3.886505 GAGAGCACTACTACTGTATGGCT 59.113 47.826 0.00 0.00 39.21 4.75
503 504 4.282496 AGAGCACTACTACTGTATGGCTT 58.718 43.478 0.00 0.00 37.76 4.35
504 505 4.098654 AGAGCACTACTACTGTATGGCTTG 59.901 45.833 0.00 0.00 37.76 4.01
505 506 3.133003 AGCACTACTACTGTATGGCTTGG 59.867 47.826 0.00 0.00 35.70 3.61
506 507 3.132289 GCACTACTACTGTATGGCTTGGA 59.868 47.826 0.00 0.00 0.00 3.53
507 508 4.683832 CACTACTACTGTATGGCTTGGAC 58.316 47.826 0.00 0.00 0.00 4.02
508 509 2.961526 ACTACTGTATGGCTTGGACG 57.038 50.000 0.00 0.00 0.00 4.79
509 510 2.453521 ACTACTGTATGGCTTGGACGA 58.546 47.619 0.00 0.00 0.00 4.20
510 511 2.427453 ACTACTGTATGGCTTGGACGAG 59.573 50.000 0.00 0.00 0.00 4.18
511 512 0.537188 ACTGTATGGCTTGGACGAGG 59.463 55.000 0.00 0.00 0.00 4.63
512 513 0.537188 CTGTATGGCTTGGACGAGGT 59.463 55.000 0.00 0.00 0.00 3.85
513 514 0.535335 TGTATGGCTTGGACGAGGTC 59.465 55.000 0.00 0.00 0.00 3.85
525 526 1.954146 CGAGGTCCACCGTGTGTTG 60.954 63.158 0.00 0.00 42.08 3.33
526 527 1.444250 GAGGTCCACCGTGTGTTGA 59.556 57.895 0.00 0.00 42.08 3.18
527 528 0.600255 GAGGTCCACCGTGTGTTGAG 60.600 60.000 0.00 0.00 42.08 3.02
528 529 1.597027 GGTCCACCGTGTGTTGAGG 60.597 63.158 0.00 0.00 0.00 3.86
530 531 0.179067 GTCCACCGTGTGTTGAGGAA 60.179 55.000 0.00 0.00 0.00 3.36
531 532 0.179067 TCCACCGTGTGTTGAGGAAC 60.179 55.000 0.00 0.00 0.00 3.62
547 548 3.683802 AGGAACTCTTGCCTCTTCATTG 58.316 45.455 0.00 0.00 0.00 2.82
548 549 3.073650 AGGAACTCTTGCCTCTTCATTGT 59.926 43.478 0.00 0.00 0.00 2.71
549 550 4.287067 AGGAACTCTTGCCTCTTCATTGTA 59.713 41.667 0.00 0.00 0.00 2.41
550 551 5.003804 GGAACTCTTGCCTCTTCATTGTAA 58.996 41.667 0.00 0.00 0.00 2.41
555 556 6.069963 ACTCTTGCCTCTTCATTGTAACCTAT 60.070 38.462 0.00 0.00 0.00 2.57
556 557 6.115446 TCTTGCCTCTTCATTGTAACCTATG 58.885 40.000 0.00 0.00 0.00 2.23
560 561 5.125417 GCCTCTTCATTGTAACCTATGCAAA 59.875 40.000 0.00 0.00 37.18 3.68
561 562 6.183360 GCCTCTTCATTGTAACCTATGCAAAT 60.183 38.462 0.00 0.00 37.18 2.32
562 563 7.198390 CCTCTTCATTGTAACCTATGCAAATG 58.802 38.462 0.00 0.00 37.18 2.32
563 564 7.099266 TCTTCATTGTAACCTATGCAAATGG 57.901 36.000 0.00 0.00 37.18 3.16
564 565 6.889177 TCTTCATTGTAACCTATGCAAATGGA 59.111 34.615 9.52 0.00 37.18 3.41
566 567 7.658525 TCATTGTAACCTATGCAAATGGAAT 57.341 32.000 9.52 2.06 37.18 3.01
567 568 8.759481 TCATTGTAACCTATGCAAATGGAATA 57.241 30.769 9.52 1.29 37.18 1.75
568 569 9.194972 TCATTGTAACCTATGCAAATGGAATAA 57.805 29.630 9.52 3.57 37.18 1.40
569 570 9.814899 CATTGTAACCTATGCAAATGGAATAAA 57.185 29.630 9.52 1.18 37.18 1.40
571 572 9.646427 TTGTAACCTATGCAAATGGAATAAAAC 57.354 29.630 9.52 1.04 30.10 2.43
572 573 9.030452 TGTAACCTATGCAAATGGAATAAAACT 57.970 29.630 9.52 0.00 0.00 2.66
575 576 8.366359 ACCTATGCAAATGGAATAAAACTCTT 57.634 30.769 9.52 0.00 0.00 2.85
577 578 9.657419 CCTATGCAAATGGAATAAAACTCTTTT 57.343 29.630 0.00 0.00 36.67 2.27
580 581 8.825667 TGCAAATGGAATAAAACTCTTTTACC 57.174 30.769 0.00 0.00 37.88 2.85
581 582 7.596995 TGCAAATGGAATAAAACTCTTTTACCG 59.403 33.333 0.00 0.00 37.88 4.02
582 583 7.062956 GCAAATGGAATAAAACTCTTTTACCGG 59.937 37.037 0.00 0.00 37.88 5.28
583 584 5.632244 TGGAATAAAACTCTTTTACCGGC 57.368 39.130 0.00 0.00 37.88 6.13
584 585 5.071370 TGGAATAAAACTCTTTTACCGGCA 58.929 37.500 0.00 0.00 37.88 5.69
586 587 5.048573 GGAATAAAACTCTTTTACCGGCACA 60.049 40.000 0.00 0.00 37.88 4.57
588 589 4.722361 AAAACTCTTTTACCGGCACAAA 57.278 36.364 0.00 0.00 0.00 2.83
589 590 4.722361 AAACTCTTTTACCGGCACAAAA 57.278 36.364 0.00 5.16 0.00 2.44
590 591 4.722361 AACTCTTTTACCGGCACAAAAA 57.278 36.364 0.00 2.84 0.00 1.94
829 1166 6.781014 AGCCATGGATCATTGTTCTGATAAAT 59.219 34.615 18.40 0.00 36.01 1.40
1022 1556 3.719268 TGTGCTAATCCAACCAGACAT 57.281 42.857 0.00 0.00 0.00 3.06
1445 1981 2.390599 CCATTGCGTCCACAGACCG 61.391 63.158 0.00 0.00 40.12 4.79
1638 2661 2.186826 GCACTCCACGCACCAGTTT 61.187 57.895 0.00 0.00 0.00 2.66
2109 3135 0.725686 CGGTGCAGAATCTCAAGCTG 59.274 55.000 0.00 0.00 0.00 4.24
2261 3293 0.318869 TATGCGTGTTTCACCGTCGT 60.319 50.000 0.00 0.00 0.00 4.34
2620 6594 2.560981 CAACCCTGAATTACCACCCAAC 59.439 50.000 0.00 0.00 0.00 3.77
2676 7039 6.976934 AATTCACAACCTCAAACTACCAAT 57.023 33.333 0.00 0.00 0.00 3.16
2687 7050 4.998672 TCAAACTACCAATACCGGACAAAG 59.001 41.667 9.46 0.00 0.00 2.77
2701 7065 4.446371 CGGACAAAGATCAATCCTTAGCT 58.554 43.478 0.00 0.00 0.00 3.32
2729 7093 7.593875 TCAACCATTTTTGACTTGTTTTGAG 57.406 32.000 0.00 0.00 30.29 3.02
2752 7116 6.476378 AGTAGTCAAATGCCTAGTCAACATT 58.524 36.000 0.00 0.00 35.59 2.71
2771 7136 7.123547 TCAACATTCAACCCAAACTCTAAAACT 59.876 33.333 0.00 0.00 0.00 2.66
2780 7152 6.990939 ACCCAAACTCTAAAACTGTCTACTTC 59.009 38.462 0.00 0.00 0.00 3.01
3169 7877 2.182030 GAGGAGCTTCGGACCACG 59.818 66.667 0.00 0.00 46.11 4.94
3247 7955 9.139734 AGAATAGTTCATATTGCAACCATGAAT 57.860 29.630 27.88 21.38 39.95 2.57
3248 7956 9.403110 GAATAGTTCATATTGCAACCATGAATC 57.597 33.333 27.88 22.59 39.95 2.52
3249 7957 8.701908 ATAGTTCATATTGCAACCATGAATCT 57.298 30.769 27.88 25.83 39.95 2.40
3251 7959 7.934457 AGTTCATATTGCAACCATGAATCTAC 58.066 34.615 27.88 20.33 39.95 2.59
3252 7960 7.776969 AGTTCATATTGCAACCATGAATCTACT 59.223 33.333 27.88 21.59 39.95 2.57
3253 7961 9.056005 GTTCATATTGCAACCATGAATCTACTA 57.944 33.333 27.88 11.74 39.95 1.82
3330 11196 2.804527 CTCACCAAGTGTGTCATGTCAG 59.195 50.000 0.00 0.00 45.61 3.51
3356 11222 4.393834 TCACTAGCACTATTTTGCAACCA 58.606 39.130 0.00 0.00 45.62 3.67
3431 11308 6.211515 TCAGAACCGTCTACTTTACAAACTC 58.788 40.000 0.00 0.00 30.85 3.01
3432 11309 5.116680 CAGAACCGTCTACTTTACAAACTCG 59.883 44.000 0.00 0.00 30.85 4.18
3443 11320 9.763465 CTACTTTACAAACTCGAACTTTCAAAA 57.237 29.630 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.105752 CACATACTCCTACTTCAGCTTCAC 58.894 45.833 0.00 0.00 0.00 3.18
8 9 2.688446 TCCGCACATACTCCTACTTCAG 59.312 50.000 0.00 0.00 0.00 3.02
19 20 1.635844 TCATGTCGTTCCGCACATAC 58.364 50.000 0.00 0.00 31.78 2.39
40 41 2.159787 CGAGCAAGTTTCTCATGAACGG 60.160 50.000 3.42 0.00 31.02 4.44
50 51 1.940613 ACCAGTTGTCGAGCAAGTTTC 59.059 47.619 5.63 0.00 38.60 2.78
58 59 5.562506 TTGACTAGATACCAGTTGTCGAG 57.437 43.478 0.00 0.00 0.00 4.04
60 61 8.188799 TCTAATTTGACTAGATACCAGTTGTCG 58.811 37.037 0.00 0.00 0.00 4.35
67 68 7.618019 ATGCCTCTAATTTGACTAGATACCA 57.382 36.000 0.00 0.00 0.00 3.25
70 71 9.330063 CAACAATGCCTCTAATTTGACTAGATA 57.670 33.333 0.00 0.00 0.00 1.98
79 80 8.322091 AGTCTAGTACAACAATGCCTCTAATTT 58.678 33.333 0.00 0.00 0.00 1.82
86 87 8.730680 CAAATTAAGTCTAGTACAACAATGCCT 58.269 33.333 0.00 0.00 0.00 4.75
87 88 7.484959 GCAAATTAAGTCTAGTACAACAATGCC 59.515 37.037 0.00 0.00 0.00 4.40
117 118 5.126067 AGAGCACAAACCATCCATACATAC 58.874 41.667 0.00 0.00 0.00 2.39
149 150 3.552890 CGGCCGATATTCATCAGAGTTCA 60.553 47.826 24.07 0.00 0.00 3.18
150 151 2.989840 CGGCCGATATTCATCAGAGTTC 59.010 50.000 24.07 0.00 0.00 3.01
155 156 2.169832 AACCGGCCGATATTCATCAG 57.830 50.000 30.73 8.09 0.00 2.90
169 170 4.085884 CGTACGAAATTCATTCAAACCGG 58.914 43.478 10.44 0.00 37.96 5.28
172 173 7.018826 TCCAATCGTACGAAATTCATTCAAAC 58.981 34.615 23.56 0.00 37.96 2.93
177 178 5.505654 GCCATCCAATCGTACGAAATTCATT 60.506 40.000 23.56 7.94 0.00 2.57
189 190 3.757248 GAGGGCGCCATCCAATCGT 62.757 63.158 30.23 0.00 0.00 3.73
197 198 4.241555 GATGTCGGAGGGCGCCAT 62.242 66.667 30.85 24.69 0.00 4.40
200 201 4.241555 ATGGATGTCGGAGGGCGC 62.242 66.667 0.00 0.00 0.00 6.53
201 202 2.280389 CATGGATGTCGGAGGGCG 60.280 66.667 0.00 0.00 0.00 6.13
202 203 1.227674 GACATGGATGTCGGAGGGC 60.228 63.158 4.06 0.00 46.46 5.19
215 216 1.227263 GGATCGGTCCACGGACATG 60.227 63.158 17.72 9.56 46.20 3.21
216 217 3.217231 GGATCGGTCCACGGACAT 58.783 61.111 17.72 3.76 46.20 3.06
224 225 0.320697 CGAATAAGGGGGATCGGTCC 59.679 60.000 6.02 6.02 44.29 4.46
226 227 1.752833 GCGAATAAGGGGGATCGGT 59.247 57.895 0.00 0.00 35.91 4.69
227 228 1.374252 CGCGAATAAGGGGGATCGG 60.374 63.158 0.00 0.00 35.91 4.18
228 229 0.032952 TTCGCGAATAAGGGGGATCG 59.967 55.000 19.38 0.00 38.28 3.69
231 232 1.142314 CGTTCGCGAATAAGGGGGA 59.858 57.895 26.23 0.00 44.71 4.81
232 233 1.885850 CCGTTCGCGAATAAGGGGG 60.886 63.158 26.23 14.82 44.71 5.40
233 234 1.142314 TCCGTTCGCGAATAAGGGG 59.858 57.895 26.23 19.46 44.71 4.79
234 235 1.477030 CGTCCGTTCGCGAATAAGGG 61.477 60.000 26.23 21.79 44.71 3.95
235 236 1.915093 CGTCCGTTCGCGAATAAGG 59.085 57.895 26.23 25.61 44.71 2.69
236 237 1.268946 GCGTCCGTTCGCGAATAAG 59.731 57.895 26.23 18.29 46.31 1.73
245 246 2.847435 ATTTCCTCCCGCGTCCGTTC 62.847 60.000 4.92 0.00 0.00 3.95
246 247 2.459202 AATTTCCTCCCGCGTCCGTT 62.459 55.000 4.92 0.00 0.00 4.44
247 248 2.459202 AAATTTCCTCCCGCGTCCGT 62.459 55.000 4.92 0.00 0.00 4.69
248 249 0.460635 TAAATTTCCTCCCGCGTCCG 60.461 55.000 4.92 0.00 0.00 4.79
249 250 1.963172 ATAAATTTCCTCCCGCGTCC 58.037 50.000 4.92 0.00 0.00 4.79
250 251 3.128068 ACAAATAAATTTCCTCCCGCGTC 59.872 43.478 4.92 0.00 0.00 5.19
252 253 3.775661 ACAAATAAATTTCCTCCCGCG 57.224 42.857 0.00 0.00 0.00 6.46
253 254 4.816392 ACAACAAATAAATTTCCTCCCGC 58.184 39.130 0.00 0.00 0.00 6.13
254 255 5.092781 CGACAACAAATAAATTTCCTCCCG 58.907 41.667 0.00 0.00 0.00 5.14
256 257 6.364976 CCAACGACAACAAATAAATTTCCTCC 59.635 38.462 0.00 0.00 0.00 4.30
257 258 7.142680 TCCAACGACAACAAATAAATTTCCTC 58.857 34.615 0.00 0.00 0.00 3.71
258 259 7.013846 TCTCCAACGACAACAAATAAATTTCCT 59.986 33.333 0.00 0.00 0.00 3.36
259 260 7.142680 TCTCCAACGACAACAAATAAATTTCC 58.857 34.615 0.00 0.00 0.00 3.13
260 261 8.742554 ATCTCCAACGACAACAAATAAATTTC 57.257 30.769 0.00 0.00 0.00 2.17
261 262 7.812669 GGATCTCCAACGACAACAAATAAATTT 59.187 33.333 0.00 0.00 35.64 1.82
262 263 7.312899 GGATCTCCAACGACAACAAATAAATT 58.687 34.615 0.00 0.00 35.64 1.82
263 264 6.127730 GGGATCTCCAACGACAACAAATAAAT 60.128 38.462 0.00 0.00 37.91 1.40
264 265 5.182380 GGGATCTCCAACGACAACAAATAAA 59.818 40.000 0.00 0.00 37.91 1.40
265 266 4.698304 GGGATCTCCAACGACAACAAATAA 59.302 41.667 0.00 0.00 37.91 1.40
268 269 2.500229 GGGATCTCCAACGACAACAAA 58.500 47.619 0.00 0.00 37.91 2.83
270 271 0.323629 GGGGATCTCCAACGACAACA 59.676 55.000 6.79 0.00 37.91 3.33
271 272 0.613777 AGGGGATCTCCAACGACAAC 59.386 55.000 15.83 0.00 37.91 3.32
272 273 1.358152 AAGGGGATCTCCAACGACAA 58.642 50.000 15.83 0.00 37.91 3.18
274 275 1.829222 TGTAAGGGGATCTCCAACGAC 59.171 52.381 15.83 6.34 37.91 4.34
275 276 2.108168 CTGTAAGGGGATCTCCAACGA 58.892 52.381 15.83 2.31 37.91 3.85
276 277 1.473434 GCTGTAAGGGGATCTCCAACG 60.473 57.143 15.83 9.05 37.91 4.10
277 278 1.559682 TGCTGTAAGGGGATCTCCAAC 59.440 52.381 15.83 12.23 37.91 3.77
278 279 1.839994 CTGCTGTAAGGGGATCTCCAA 59.160 52.381 15.83 0.00 37.91 3.53
279 280 1.273838 ACTGCTGTAAGGGGATCTCCA 60.274 52.381 15.83 0.00 37.91 3.86
280 281 1.139853 CACTGCTGTAAGGGGATCTCC 59.860 57.143 2.22 2.22 0.00 3.71
281 282 1.474143 GCACTGCTGTAAGGGGATCTC 60.474 57.143 0.00 0.00 0.00 2.75
282 283 0.543749 GCACTGCTGTAAGGGGATCT 59.456 55.000 0.00 0.00 0.00 2.75
283 284 0.543749 AGCACTGCTGTAAGGGGATC 59.456 55.000 1.67 0.00 37.57 3.36
284 285 0.995024 AAGCACTGCTGTAAGGGGAT 59.005 50.000 3.73 0.00 39.62 3.85
285 286 0.324943 GAAGCACTGCTGTAAGGGGA 59.675 55.000 3.73 0.00 39.62 4.81
286 287 0.036732 TGAAGCACTGCTGTAAGGGG 59.963 55.000 3.73 0.00 39.62 4.79
287 288 1.808945 CTTGAAGCACTGCTGTAAGGG 59.191 52.381 3.73 0.00 39.62 3.95
288 289 1.808945 CCTTGAAGCACTGCTGTAAGG 59.191 52.381 22.54 22.54 42.06 2.69
289 290 1.808945 CCCTTGAAGCACTGCTGTAAG 59.191 52.381 3.73 11.58 39.62 2.34
290 291 1.896220 CCCTTGAAGCACTGCTGTAA 58.104 50.000 3.73 2.39 39.62 2.41
291 292 0.606401 GCCCTTGAAGCACTGCTGTA 60.606 55.000 3.73 0.00 39.62 2.74
293 294 1.248785 ATGCCCTTGAAGCACTGCTG 61.249 55.000 3.73 0.00 44.40 4.41
296 297 0.609957 TGGATGCCCTTGAAGCACTG 60.610 55.000 0.00 0.00 44.40 3.66
298 299 1.941999 GCTGGATGCCCTTGAAGCAC 61.942 60.000 0.00 0.00 44.40 4.40
299 300 1.679977 GCTGGATGCCCTTGAAGCA 60.680 57.895 0.00 0.00 45.94 3.91
300 301 3.204418 GCTGGATGCCCTTGAAGC 58.796 61.111 0.00 0.00 35.15 3.86
309 310 3.448660 AGAATAAAGGTTTGGCTGGATGC 59.551 43.478 0.00 0.00 41.94 3.91
310 311 5.413499 CAAGAATAAAGGTTTGGCTGGATG 58.587 41.667 0.00 0.00 0.00 3.51
311 312 4.081476 GCAAGAATAAAGGTTTGGCTGGAT 60.081 41.667 0.00 0.00 0.00 3.41
312 313 3.258123 GCAAGAATAAAGGTTTGGCTGGA 59.742 43.478 0.00 0.00 0.00 3.86
313 314 3.588955 GCAAGAATAAAGGTTTGGCTGG 58.411 45.455 0.00 0.00 0.00 4.85
314 315 3.244976 CGCAAGAATAAAGGTTTGGCTG 58.755 45.455 0.00 0.00 43.02 4.85
315 316 2.231235 CCGCAAGAATAAAGGTTTGGCT 59.769 45.455 0.00 0.00 43.02 4.75
316 317 2.230266 TCCGCAAGAATAAAGGTTTGGC 59.770 45.455 0.00 0.00 43.02 4.52
318 319 3.501950 GCTCCGCAAGAATAAAGGTTTG 58.498 45.455 0.00 0.00 43.02 2.93
319 320 2.492088 GGCTCCGCAAGAATAAAGGTTT 59.508 45.455 0.00 0.00 43.02 3.27
323 324 2.749621 ACTTGGCTCCGCAAGAATAAAG 59.250 45.455 7.34 0.00 43.02 1.85
324 325 2.790433 ACTTGGCTCCGCAAGAATAAA 58.210 42.857 7.34 0.00 43.02 1.40
325 326 2.489938 ACTTGGCTCCGCAAGAATAA 57.510 45.000 7.34 0.00 43.02 1.40
326 327 2.290008 TGAACTTGGCTCCGCAAGAATA 60.290 45.455 7.34 0.00 43.02 1.75
328 329 0.179032 TGAACTTGGCTCCGCAAGAA 60.179 50.000 7.34 0.00 43.02 2.52
329 330 0.179032 TTGAACTTGGCTCCGCAAGA 60.179 50.000 7.34 0.00 43.02 3.02
330 331 0.667993 TTTGAACTTGGCTCCGCAAG 59.332 50.000 0.00 0.00 34.79 4.01
331 332 0.383949 GTTTGAACTTGGCTCCGCAA 59.616 50.000 0.00 0.00 0.00 4.85
332 333 0.749818 TGTTTGAACTTGGCTCCGCA 60.750 50.000 0.00 0.00 0.00 5.69
333 334 0.383949 TTGTTTGAACTTGGCTCCGC 59.616 50.000 0.00 0.00 0.00 5.54
334 335 1.946768 TCTTGTTTGAACTTGGCTCCG 59.053 47.619 0.00 0.00 0.00 4.63
335 336 5.904362 ATATCTTGTTTGAACTTGGCTCC 57.096 39.130 0.00 0.00 0.00 4.70
336 337 7.359514 GCAAAATATCTTGTTTGAACTTGGCTC 60.360 37.037 2.46 0.00 36.96 4.70
337 338 6.424812 GCAAAATATCTTGTTTGAACTTGGCT 59.575 34.615 2.46 0.00 36.96 4.75
340 341 9.252962 AGAAGCAAAATATCTTGTTTGAACTTG 57.747 29.630 0.00 0.00 36.96 3.16
341 342 9.252962 CAGAAGCAAAATATCTTGTTTGAACTT 57.747 29.630 0.00 0.00 36.96 2.66
344 345 9.985730 AATCAGAAGCAAAATATCTTGTTTGAA 57.014 25.926 0.00 0.00 36.96 2.69
345 346 9.630098 GAATCAGAAGCAAAATATCTTGTTTGA 57.370 29.630 0.00 0.00 36.96 2.69
346 347 9.414295 TGAATCAGAAGCAAAATATCTTGTTTG 57.586 29.630 0.00 0.00 37.70 2.93
347 348 9.415544 GTGAATCAGAAGCAAAATATCTTGTTT 57.584 29.630 0.00 0.00 33.08 2.83
348 349 8.579006 TGTGAATCAGAAGCAAAATATCTTGTT 58.421 29.630 0.00 0.00 0.00 2.83
350 351 8.024865 TGTGTGAATCAGAAGCAAAATATCTTG 58.975 33.333 0.00 0.00 0.00 3.02
351 352 8.114331 TGTGTGAATCAGAAGCAAAATATCTT 57.886 30.769 0.00 0.00 0.00 2.40
352 353 7.627939 GCTGTGTGAATCAGAAGCAAAATATCT 60.628 37.037 6.81 0.00 37.09 1.98
355 356 5.335897 GGCTGTGTGAATCAGAAGCAAAATA 60.336 40.000 12.04 0.00 38.16 1.40
357 358 3.243501 GGCTGTGTGAATCAGAAGCAAAA 60.244 43.478 12.04 0.00 38.16 2.44
358 359 2.294233 GGCTGTGTGAATCAGAAGCAAA 59.706 45.455 12.04 0.00 38.16 3.68
359 360 1.881973 GGCTGTGTGAATCAGAAGCAA 59.118 47.619 12.04 0.00 38.16 3.91
360 361 1.202794 TGGCTGTGTGAATCAGAAGCA 60.203 47.619 12.04 0.00 38.16 3.91
362 363 2.227388 GGTTGGCTGTGTGAATCAGAAG 59.773 50.000 0.00 0.00 35.20 2.85
363 364 2.229792 GGTTGGCTGTGTGAATCAGAA 58.770 47.619 0.00 0.00 35.20 3.02
364 365 1.877680 CGGTTGGCTGTGTGAATCAGA 60.878 52.381 0.00 0.00 35.20 3.27
366 367 1.514678 GCGGTTGGCTGTGTGAATCA 61.515 55.000 0.00 0.00 39.11 2.57
367 368 1.210155 GCGGTTGGCTGTGTGAATC 59.790 57.895 0.00 0.00 39.11 2.52
369 370 1.315981 TTTGCGGTTGGCTGTGTGAA 61.316 50.000 0.00 0.00 44.05 3.18
374 375 0.037590 TATCCTTTGCGGTTGGCTGT 59.962 50.000 0.00 0.00 44.05 4.40
375 376 1.066002 CATATCCTTTGCGGTTGGCTG 59.934 52.381 0.00 0.00 44.05 4.85
376 377 1.064758 TCATATCCTTTGCGGTTGGCT 60.065 47.619 0.00 0.00 44.05 4.75
377 378 1.388547 TCATATCCTTTGCGGTTGGC 58.611 50.000 0.00 0.00 43.96 4.52
378 379 2.294233 CCATCATATCCTTTGCGGTTGG 59.706 50.000 0.00 0.00 0.00 3.77
379 380 3.213506 TCCATCATATCCTTTGCGGTTG 58.786 45.455 0.00 0.00 0.00 3.77
380 381 3.576078 TCCATCATATCCTTTGCGGTT 57.424 42.857 0.00 0.00 0.00 4.44
381 382 3.795688 ATCCATCATATCCTTTGCGGT 57.204 42.857 0.00 0.00 0.00 5.68
382 383 5.430886 TCATATCCATCATATCCTTTGCGG 58.569 41.667 0.00 0.00 0.00 5.69
383 384 6.990939 AGATCATATCCATCATATCCTTTGCG 59.009 38.462 0.00 0.00 0.00 4.85
384 385 8.622157 CAAGATCATATCCATCATATCCTTTGC 58.378 37.037 0.00 0.00 0.00 3.68
385 386 9.121658 CCAAGATCATATCCATCATATCCTTTG 57.878 37.037 0.00 0.00 0.00 2.77
390 391 6.002704 GGCCCAAGATCATATCCATCATATC 58.997 44.000 0.00 0.00 0.00 1.63
391 392 5.434044 TGGCCCAAGATCATATCCATCATAT 59.566 40.000 0.00 0.00 0.00 1.78
392 393 4.789702 TGGCCCAAGATCATATCCATCATA 59.210 41.667 0.00 0.00 0.00 2.15
394 395 2.988148 TGGCCCAAGATCATATCCATCA 59.012 45.455 0.00 0.00 0.00 3.07
395 396 3.726557 TGGCCCAAGATCATATCCATC 57.273 47.619 0.00 0.00 0.00 3.51
397 398 3.140707 ACATTGGCCCAAGATCATATCCA 59.859 43.478 1.16 0.00 0.00 3.41
398 399 3.760684 GACATTGGCCCAAGATCATATCC 59.239 47.826 1.16 0.00 0.00 2.59
400 401 4.736611 AGACATTGGCCCAAGATCATAT 57.263 40.909 1.16 0.00 0.00 1.78
402 403 3.393426 AAGACATTGGCCCAAGATCAT 57.607 42.857 1.16 0.00 0.00 2.45
403 404 2.905415 AAGACATTGGCCCAAGATCA 57.095 45.000 1.16 0.00 0.00 2.92
404 405 2.098117 CGAAAGACATTGGCCCAAGATC 59.902 50.000 1.16 1.80 0.00 2.75
407 408 0.109132 GCGAAAGACATTGGCCCAAG 60.109 55.000 1.16 0.00 36.82 3.61
408 409 0.539438 AGCGAAAGACATTGGCCCAA 60.539 50.000 0.00 0.00 43.12 4.12
409 410 1.074775 AGCGAAAGACATTGGCCCA 59.925 52.632 0.00 0.00 43.12 5.36
410 411 0.960364 TCAGCGAAAGACATTGGCCC 60.960 55.000 0.00 0.00 43.12 5.80
411 412 1.098050 ATCAGCGAAAGACATTGGCC 58.902 50.000 0.00 0.00 43.12 5.36
412 413 2.095059 ACAATCAGCGAAAGACATTGGC 60.095 45.455 0.00 0.00 42.50 4.52
414 415 6.779117 AGATTACAATCAGCGAAAGACATTG 58.221 36.000 4.85 0.00 37.89 2.82
415 416 6.992063 AGATTACAATCAGCGAAAGACATT 57.008 33.333 4.85 0.00 37.89 2.71
416 417 6.820656 AGAAGATTACAATCAGCGAAAGACAT 59.179 34.615 4.85 0.00 37.89 3.06
417 418 6.166279 AGAAGATTACAATCAGCGAAAGACA 58.834 36.000 4.85 0.00 37.89 3.41
418 419 6.654793 AGAAGATTACAATCAGCGAAAGAC 57.345 37.500 4.85 0.00 37.89 3.01
420 421 8.324567 GTCTAAGAAGATTACAATCAGCGAAAG 58.675 37.037 4.85 0.00 37.89 2.62
421 422 7.277981 GGTCTAAGAAGATTACAATCAGCGAAA 59.722 37.037 4.85 0.00 37.89 3.46
422 423 6.757010 GGTCTAAGAAGATTACAATCAGCGAA 59.243 38.462 4.85 0.00 37.89 4.70
423 424 6.096987 AGGTCTAAGAAGATTACAATCAGCGA 59.903 38.462 4.85 0.00 37.89 4.93
424 425 6.276847 AGGTCTAAGAAGATTACAATCAGCG 58.723 40.000 4.85 0.00 37.89 5.18
425 426 8.499403 AAAGGTCTAAGAAGATTACAATCAGC 57.501 34.615 4.85 0.00 37.89 4.26
467 468 5.984926 AGTAGTGCTCTCTGTACGACTATAC 59.015 44.000 0.00 0.00 42.90 1.47
468 469 6.159299 AGTAGTGCTCTCTGTACGACTATA 57.841 41.667 0.00 0.00 42.90 1.31
469 470 5.026038 AGTAGTGCTCTCTGTACGACTAT 57.974 43.478 0.00 0.00 42.90 2.12
470 471 4.468765 AGTAGTGCTCTCTGTACGACTA 57.531 45.455 0.00 0.00 42.90 2.59
472 473 4.033129 CAGTAGTAGTGCTCTCTGTACGAC 59.967 50.000 0.00 0.00 37.22 4.34
473 474 4.182339 CAGTAGTAGTGCTCTCTGTACGA 58.818 47.826 0.00 0.00 36.37 3.43
474 475 3.933955 ACAGTAGTAGTGCTCTCTGTACG 59.066 47.826 14.03 0.00 39.17 3.67
475 476 6.017770 CCATACAGTAGTAGTGCTCTCTGTAC 60.018 46.154 19.87 5.89 42.05 2.90
476 477 6.056236 CCATACAGTAGTAGTGCTCTCTGTA 58.944 44.000 19.80 19.80 42.68 2.74
478 479 4.261405 GCCATACAGTAGTAGTGCTCTCTG 60.261 50.000 4.82 10.24 36.26 3.35
479 480 3.886505 GCCATACAGTAGTAGTGCTCTCT 59.113 47.826 4.82 0.00 32.86 3.10
480 481 3.886505 AGCCATACAGTAGTAGTGCTCTC 59.113 47.826 4.82 0.00 36.74 3.20
481 482 3.904717 AGCCATACAGTAGTAGTGCTCT 58.095 45.455 4.82 0.00 36.74 4.09
482 483 4.363999 CAAGCCATACAGTAGTAGTGCTC 58.636 47.826 4.82 0.00 39.00 4.26
483 484 3.133003 CCAAGCCATACAGTAGTAGTGCT 59.867 47.826 4.82 0.00 40.59 4.40
484 485 3.132289 TCCAAGCCATACAGTAGTAGTGC 59.868 47.826 4.82 0.00 32.86 4.40
485 486 4.683832 GTCCAAGCCATACAGTAGTAGTG 58.316 47.826 3.30 3.30 32.86 2.74
487 488 3.630769 TCGTCCAAGCCATACAGTAGTAG 59.369 47.826 0.00 0.00 32.86 2.57
488 489 3.623703 TCGTCCAAGCCATACAGTAGTA 58.376 45.455 0.00 0.00 34.10 1.82
489 490 2.427453 CTCGTCCAAGCCATACAGTAGT 59.573 50.000 0.00 0.00 0.00 2.73
490 491 2.223829 CCTCGTCCAAGCCATACAGTAG 60.224 54.545 0.00 0.00 0.00 2.57
491 492 1.754803 CCTCGTCCAAGCCATACAGTA 59.245 52.381 0.00 0.00 0.00 2.74
494 495 0.535335 GACCTCGTCCAAGCCATACA 59.465 55.000 0.00 0.00 0.00 2.29
495 496 3.364277 GACCTCGTCCAAGCCATAC 57.636 57.895 0.00 0.00 0.00 2.39
505 506 2.049433 CACACGGTGGACCTCGTC 60.049 66.667 13.48 0.00 37.53 4.20
506 507 2.428925 AACACACGGTGGACCTCGT 61.429 57.895 13.48 7.47 37.94 4.18
507 508 1.954146 CAACACACGGTGGACCTCG 60.954 63.158 13.48 6.32 37.94 4.63
508 509 0.600255 CTCAACACACGGTGGACCTC 60.600 60.000 13.48 0.00 37.94 3.85
509 510 1.445942 CTCAACACACGGTGGACCT 59.554 57.895 13.48 0.00 37.94 3.85
510 511 1.597027 CCTCAACACACGGTGGACC 60.597 63.158 13.48 0.00 37.94 4.46
511 512 0.179067 TTCCTCAACACACGGTGGAC 60.179 55.000 13.48 0.00 37.94 4.02
512 513 0.179067 GTTCCTCAACACACGGTGGA 60.179 55.000 13.48 0.00 37.94 4.02
513 514 0.179056 AGTTCCTCAACACACGGTGG 60.179 55.000 13.48 4.17 37.94 4.61
514 515 1.202533 AGAGTTCCTCAACACACGGTG 60.203 52.381 6.58 6.58 34.60 4.94
515 516 1.120530 AGAGTTCCTCAACACACGGT 58.879 50.000 0.00 0.00 34.60 4.83
516 517 1.867233 CAAGAGTTCCTCAACACACGG 59.133 52.381 0.00 0.00 34.60 4.94
518 519 1.604278 GGCAAGAGTTCCTCAACACAC 59.396 52.381 0.00 0.00 34.60 3.82
519 520 1.490490 AGGCAAGAGTTCCTCAACACA 59.510 47.619 0.00 0.00 34.60 3.72
520 521 2.147150 GAGGCAAGAGTTCCTCAACAC 58.853 52.381 3.60 0.00 46.24 3.32
521 522 2.550830 GAGGCAAGAGTTCCTCAACA 57.449 50.000 3.60 0.00 46.24 3.33
526 527 3.073650 ACAATGAAGAGGCAAGAGTTCCT 59.926 43.478 0.00 0.00 34.90 3.36
527 528 3.416156 ACAATGAAGAGGCAAGAGTTCC 58.584 45.455 0.00 0.00 0.00 3.62
528 529 5.106515 GGTTACAATGAAGAGGCAAGAGTTC 60.107 44.000 0.00 0.00 0.00 3.01
530 531 4.042187 AGGTTACAATGAAGAGGCAAGAGT 59.958 41.667 0.00 0.00 0.00 3.24
531 532 4.583871 AGGTTACAATGAAGAGGCAAGAG 58.416 43.478 0.00 0.00 0.00 2.85
532 533 4.640771 AGGTTACAATGAAGAGGCAAGA 57.359 40.909 0.00 0.00 0.00 3.02
533 534 5.220931 GCATAGGTTACAATGAAGAGGCAAG 60.221 44.000 1.84 0.00 0.00 4.01
536 537 4.199310 TGCATAGGTTACAATGAAGAGGC 58.801 43.478 1.84 0.00 0.00 4.70
537 538 6.757897 TTTGCATAGGTTACAATGAAGAGG 57.242 37.500 0.00 0.00 0.00 3.69
539 540 6.889177 TCCATTTGCATAGGTTACAATGAAGA 59.111 34.615 5.30 0.00 0.00 2.87
542 543 7.658525 ATTCCATTTGCATAGGTTACAATGA 57.341 32.000 5.30 0.00 0.00 2.57
543 544 9.814899 TTTATTCCATTTGCATAGGTTACAATG 57.185 29.630 0.00 0.00 0.00 2.82
545 546 9.646427 GTTTTATTCCATTTGCATAGGTTACAA 57.354 29.630 0.00 0.00 0.00 2.41
546 547 9.030452 AGTTTTATTCCATTTGCATAGGTTACA 57.970 29.630 0.00 0.00 0.00 2.41
547 548 9.516314 GAGTTTTATTCCATTTGCATAGGTTAC 57.484 33.333 0.00 0.00 0.00 2.50
548 549 9.474313 AGAGTTTTATTCCATTTGCATAGGTTA 57.526 29.630 0.00 0.00 0.00 2.85
549 550 8.366359 AGAGTTTTATTCCATTTGCATAGGTT 57.634 30.769 0.00 0.00 0.00 3.50
550 551 7.961326 AGAGTTTTATTCCATTTGCATAGGT 57.039 32.000 0.00 0.00 0.00 3.08
555 556 7.596995 CGGTAAAAGAGTTTTATTCCATTTGCA 59.403 33.333 0.00 0.00 37.44 4.08
556 557 7.062956 CCGGTAAAAGAGTTTTATTCCATTTGC 59.937 37.037 0.00 0.00 37.44 3.68
560 561 5.712917 TGCCGGTAAAAGAGTTTTATTCCAT 59.287 36.000 1.90 0.00 37.44 3.41
561 562 5.048573 GTGCCGGTAAAAGAGTTTTATTCCA 60.049 40.000 1.90 0.00 37.44 3.53
562 563 5.048573 TGTGCCGGTAAAAGAGTTTTATTCC 60.049 40.000 1.90 0.00 37.44 3.01
563 564 6.004408 TGTGCCGGTAAAAGAGTTTTATTC 57.996 37.500 1.90 0.00 37.44 1.75
564 565 6.394025 TTGTGCCGGTAAAAGAGTTTTATT 57.606 33.333 1.90 0.00 37.44 1.40
566 567 5.831702 TTTGTGCCGGTAAAAGAGTTTTA 57.168 34.783 1.90 0.00 34.19 1.52
567 568 4.722361 TTTGTGCCGGTAAAAGAGTTTT 57.278 36.364 1.90 0.00 36.67 2.43
568 569 4.722361 TTTTGTGCCGGTAAAAGAGTTT 57.278 36.364 1.90 0.00 0.00 2.66
569 570 4.722361 TTTTTGTGCCGGTAAAAGAGTT 57.278 36.364 1.90 0.00 0.00 3.01
629 630 7.791766 TCATTATCTCAGTAGGGATTTCTCCTT 59.208 37.037 0.00 0.00 41.74 3.36
630 631 7.309091 TCATTATCTCAGTAGGGATTTCTCCT 58.691 38.462 0.00 0.00 41.74 3.69
631 632 7.546250 TCATTATCTCAGTAGGGATTTCTCC 57.454 40.000 0.00 0.00 41.26 3.71
632 633 7.548780 GCATCATTATCTCAGTAGGGATTTCTC 59.451 40.741 0.00 0.00 0.00 2.87
634 635 6.312426 CGCATCATTATCTCAGTAGGGATTTC 59.688 42.308 0.00 0.00 0.00 2.17
635 636 6.169094 CGCATCATTATCTCAGTAGGGATTT 58.831 40.000 0.00 0.00 0.00 2.17
636 637 5.247110 ACGCATCATTATCTCAGTAGGGATT 59.753 40.000 0.00 0.00 0.00 3.01
637 638 4.774726 ACGCATCATTATCTCAGTAGGGAT 59.225 41.667 0.00 0.00 0.00 3.85
639 640 4.527509 ACGCATCATTATCTCAGTAGGG 57.472 45.455 0.00 0.00 0.00 3.53
640 641 7.094508 AGATACGCATCATTATCTCAGTAGG 57.905 40.000 0.00 0.00 30.58 3.18
642 643 8.841300 GGATAGATACGCATCATTATCTCAGTA 58.159 37.037 0.00 0.00 36.60 2.74
1022 1556 0.245266 TACGCTCGACATGGCTGAAA 59.755 50.000 0.00 0.00 0.00 2.69
1458 1994 3.576356 CTGCCGCGCTTGTATGGG 61.576 66.667 5.56 0.00 0.00 4.00
1556 2104 4.867599 GGCCGCTACCGTCGAAGG 62.868 72.222 16.38 16.38 37.30 3.46
1583 2131 2.048222 CGTCCACACCGCTGATGT 60.048 61.111 0.00 0.00 0.00 3.06
1638 2661 2.279851 CAGACGCCGTGGTTGTCA 60.280 61.111 0.00 0.00 35.09 3.58
2215 3247 2.747822 GCTGATGCGTCACTGCCAG 61.748 63.158 3.97 0.00 0.00 4.85
2582 6556 5.765182 CAGGGTTGTAATGTGAACTCTTCTT 59.235 40.000 0.00 0.00 30.08 2.52
2620 6594 8.818141 TTCAAAGTCAGTGTTGTATCTTAGAG 57.182 34.615 0.00 0.00 0.00 2.43
2676 7039 4.837093 AAGGATTGATCTTTGTCCGGTA 57.163 40.909 0.00 0.00 35.89 4.02
2687 7050 5.415701 TGGTTGAAACAGCTAAGGATTGATC 59.584 40.000 0.00 0.00 0.00 2.92
2701 7065 7.736447 AAACAAGTCAAAAATGGTTGAAACA 57.264 28.000 0.00 0.00 39.18 2.83
2729 7093 6.371548 TGAATGTTGACTAGGCATTTGACTAC 59.628 38.462 0.00 0.00 33.72 2.73
2752 7116 5.751586 AGACAGTTTTAGAGTTTGGGTTGA 58.248 37.500 0.00 0.00 0.00 3.18
2771 7136 5.353394 AGTTTGAGGTTGTGAAGTAGACA 57.647 39.130 0.00 0.00 0.00 3.41
2780 7152 4.326009 CGGTTTTGAAAGTTTGAGGTTGTG 59.674 41.667 0.00 0.00 0.00 3.33
3116 7824 6.166982 CCTGTAAATCGGTTTTCTCTTCTCT 58.833 40.000 0.00 0.00 0.00 3.10
3275 11141 6.254157 CCGCATGTTGAGAGAATTAAATTTGG 59.746 38.462 0.00 0.00 0.00 3.28
3330 11196 4.985413 TGCAAAATAGTGCTAGTGAATGC 58.015 39.130 0.00 0.00 45.17 3.56
3356 11222 8.184192 GCATTTGACTAGTAAAAGTATGCATGT 58.816 33.333 18.82 0.00 38.21 3.21
3368 11245 9.151471 GATGTTGACTAAGCATTTGACTAGTAA 57.849 33.333 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.