Multiple sequence alignment - TraesCS2D01G106600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G106600 chr2D 100.000 5784 0 0 1 5784 58776544 58782327 0.000000e+00 10682.0
1 TraesCS2D01G106600 chr2D 97.619 42 1 0 5662 5703 144003499 144003540 8.040000e-09 73.1
2 TraesCS2D01G106600 chr2D 97.619 42 1 0 5662 5703 144419013 144419054 8.040000e-09 73.1
3 TraesCS2D01G106600 chr2D 95.238 42 2 0 5662 5703 143925078 143925119 3.740000e-07 67.6
4 TraesCS2D01G106600 chr2A 95.091 1589 70 5 3362 4942 59555788 59554200 0.000000e+00 2495.0
5 TraesCS2D01G106600 chr2A 90.000 1010 62 18 972 1959 59558122 59557130 0.000000e+00 1269.0
6 TraesCS2D01G106600 chr2A 91.230 878 49 17 2500 3362 59556681 59555817 0.000000e+00 1170.0
7 TraesCS2D01G106600 chr2A 91.024 713 52 4 5078 5784 59554200 59553494 0.000000e+00 952.0
8 TraesCS2D01G106600 chr2A 87.986 566 32 15 352 898 59558797 59558249 2.270000e-178 636.0
9 TraesCS2D01G106600 chr2A 81.542 428 42 16 272 692 59570195 59569798 9.350000e-83 318.0
10 TraesCS2D01G106600 chr2A 93.750 176 8 1 1415 1590 59568243 59568071 1.600000e-65 261.0
11 TraesCS2D01G106600 chr2A 83.121 314 17 17 797 1084 59569138 59568835 2.680000e-63 254.0
12 TraesCS2D01G106600 chr2A 83.333 204 21 8 147 338 59559171 59558969 5.960000e-40 176.0
13 TraesCS2D01G106600 chr2B 94.462 1571 73 10 3362 4923 91259826 91261391 0.000000e+00 2407.0
14 TraesCS2D01G106600 chr2B 86.054 1513 119 35 972 2430 91257262 91258736 0.000000e+00 1541.0
15 TraesCS2D01G106600 chr2B 93.379 876 40 11 2496 3362 91258931 91259797 0.000000e+00 1280.0
16 TraesCS2D01G106600 chr2B 86.108 799 63 22 2304 3082 91276963 91277733 0.000000e+00 817.0
17 TraesCS2D01G106600 chr2B 88.386 663 65 7 5055 5711 91261407 91262063 0.000000e+00 787.0
18 TraesCS2D01G106600 chr2B 97.619 42 1 0 5662 5703 202288290 202288331 8.040000e-09 73.1
19 TraesCS2D01G106600 chr4D 83.949 623 94 5 3696 4315 297359716 297359097 4.990000e-165 592.0
20 TraesCS2D01G106600 chr4D 89.167 240 26 0 1097 1336 297384472 297384233 3.390000e-77 300.0
21 TraesCS2D01G106600 chr4A 83.544 632 98 5 3687 4315 190834012 190834640 2.320000e-163 586.0
22 TraesCS2D01G106600 chr4A 89.167 240 26 0 1097 1336 190823750 190823989 3.390000e-77 300.0
23 TraesCS2D01G106600 chr4A 87.838 74 4 5 3212 3283 597902613 597902543 1.340000e-11 82.4
24 TraesCS2D01G106600 chr4B 83.628 623 96 5 3696 4315 368412763 368412144 1.080000e-161 580.0
25 TraesCS2D01G106600 chr4B 89.167 240 26 0 1097 1336 368419818 368419579 3.390000e-77 300.0
26 TraesCS2D01G106600 chr7B 85.664 286 37 4 1110 1393 532275747 532276030 1.220000e-76 298.0
27 TraesCS2D01G106600 chr7B 91.228 57 5 0 1534 1590 532276222 532276278 1.730000e-10 78.7
28 TraesCS2D01G106600 chr7A 85.664 286 37 4 1110 1393 571701702 571701985 1.220000e-76 298.0
29 TraesCS2D01G106600 chr7A 82.927 246 37 3 1126 1367 172469138 172468894 3.510000e-52 217.0
30 TraesCS2D01G106600 chr7A 91.228 57 5 0 1534 1590 571702177 571702233 1.730000e-10 78.7
31 TraesCS2D01G106600 chr7D 85.315 286 38 4 1110 1393 504174807 504175090 5.670000e-75 292.0
32 TraesCS2D01G106600 chr7D 91.228 57 5 0 1534 1590 504175282 504175338 1.730000e-10 78.7
33 TraesCS2D01G106600 chr7D 90.566 53 5 0 1534 1586 169914911 169914859 2.890000e-08 71.3
34 TraesCS2D01G106600 chr7D 94.872 39 1 1 1536 1573 575508208 575508170 6.260000e-05 60.2
35 TraesCS2D01G106600 chr6D 86.508 252 31 1 1126 1374 381999834 381999583 2.050000e-69 274.0
36 TraesCS2D01G106600 chr3D 79.528 127 22 4 5327 5453 301587868 301587990 2.870000e-13 87.9
37 TraesCS2D01G106600 chr3B 100.000 28 0 0 3244 3271 662528894 662528921 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G106600 chr2D 58776544 58782327 5783 False 10682.000000 10682 100.000000 1 5784 1 chr2D.!!$F1 5783
1 TraesCS2D01G106600 chr2A 59553494 59559171 5677 True 1116.333333 2495 89.777333 147 5784 6 chr2A.!!$R1 5637
2 TraesCS2D01G106600 chr2A 59568071 59570195 2124 True 277.666667 318 86.137667 272 1590 3 chr2A.!!$R2 1318
3 TraesCS2D01G106600 chr2B 91257262 91262063 4801 False 1503.750000 2407 90.570250 972 5711 4 chr2B.!!$F3 4739
4 TraesCS2D01G106600 chr2B 91276963 91277733 770 False 817.000000 817 86.108000 2304 3082 1 chr2B.!!$F1 778
5 TraesCS2D01G106600 chr4D 297359097 297359716 619 True 592.000000 592 83.949000 3696 4315 1 chr4D.!!$R1 619
6 TraesCS2D01G106600 chr4A 190834012 190834640 628 False 586.000000 586 83.544000 3687 4315 1 chr4A.!!$F2 628
7 TraesCS2D01G106600 chr4B 368412144 368412763 619 True 580.000000 580 83.628000 3696 4315 1 chr4B.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.040058 ATGGAACTTGAGCATGCCCA 59.960 50.0 15.66 13.1 0.00 5.36 F
977 1801 0.107945 ATCAGAGCCAGTTTCCTCGC 60.108 55.0 0.00 0.0 33.39 5.03 F
2104 3278 0.108138 ACACTCCCAGTTATCAGCGC 60.108 55.0 0.00 0.0 0.00 5.92 F
2173 3347 0.472734 ACTGAACTGCCTGGAGAGGT 60.473 55.0 0.00 0.0 42.15 3.85 F
4039 5460 0.402887 TCTACACCGACCTCACCTCA 59.597 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 2006 1.365633 GTAGAGCGGGGAGATGCTG 59.634 63.158 0.0 0.0 42.60 4.41 R
2160 3334 0.035630 CAGGAAACCTCTCCAGGCAG 60.036 60.000 0.0 0.0 45.05 4.85 R
3787 5208 0.173481 CGATGGAGCCGAAGAAGACA 59.827 55.000 0.0 0.0 0.00 3.41 R
4060 5481 2.665185 AGGTTGGTGACGAAGCGC 60.665 61.111 0.0 0.0 0.00 5.92 R
4951 6381 0.322456 CTTTTGTCCATCCTCCGCCA 60.322 55.000 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.202245 GTGGTAGTATGGAACTTGAGCA 57.798 45.455 0.00 0.00 39.80 4.26
22 23 4.770795 GTGGTAGTATGGAACTTGAGCAT 58.229 43.478 0.00 0.00 39.80 3.79
23 24 4.572389 GTGGTAGTATGGAACTTGAGCATG 59.428 45.833 0.00 0.00 39.80 4.06
24 25 3.561725 GGTAGTATGGAACTTGAGCATGC 59.438 47.826 10.51 10.51 39.80 4.06
25 26 2.648059 AGTATGGAACTTGAGCATGCC 58.352 47.619 15.66 6.65 33.35 4.40
26 27 1.678101 GTATGGAACTTGAGCATGCCC 59.322 52.381 15.66 2.04 0.00 5.36
27 28 0.040058 ATGGAACTTGAGCATGCCCA 59.960 50.000 15.66 13.10 0.00 5.36
28 29 0.609957 TGGAACTTGAGCATGCCCAG 60.610 55.000 15.66 10.43 0.00 4.45
29 30 0.610232 GGAACTTGAGCATGCCCAGT 60.610 55.000 15.66 11.12 0.00 4.00
30 31 0.524862 GAACTTGAGCATGCCCAGTG 59.475 55.000 15.66 8.36 0.00 3.66
31 32 0.896940 AACTTGAGCATGCCCAGTGG 60.897 55.000 15.66 0.63 0.00 4.00
32 33 1.303888 CTTGAGCATGCCCAGTGGT 60.304 57.895 15.66 0.00 0.00 4.16
33 34 1.303561 TTGAGCATGCCCAGTGGTC 60.304 57.895 15.66 3.79 42.72 4.02
34 35 1.782201 TTGAGCATGCCCAGTGGTCT 61.782 55.000 15.66 0.00 42.82 3.85
35 36 1.451028 GAGCATGCCCAGTGGTCTC 60.451 63.158 15.66 0.00 40.10 3.36
36 37 2.189191 GAGCATGCCCAGTGGTCTCA 62.189 60.000 15.66 3.42 40.10 3.27
37 38 1.077212 GCATGCCCAGTGGTCTCAT 60.077 57.895 6.36 5.75 0.00 2.90
38 39 1.099879 GCATGCCCAGTGGTCTCATC 61.100 60.000 6.36 0.60 0.00 2.92
39 40 0.465097 CATGCCCAGTGGTCTCATCC 60.465 60.000 8.74 0.00 0.00 3.51
40 41 0.915872 ATGCCCAGTGGTCTCATCCA 60.916 55.000 8.74 0.00 34.85 3.41
41 42 0.915872 TGCCCAGTGGTCTCATCCAT 60.916 55.000 8.74 0.00 39.81 3.41
42 43 0.257039 GCCCAGTGGTCTCATCCATT 59.743 55.000 8.74 0.00 39.81 3.16
43 44 1.748591 GCCCAGTGGTCTCATCCATTC 60.749 57.143 8.74 0.00 39.81 2.67
44 45 1.473965 CCCAGTGGTCTCATCCATTCG 60.474 57.143 8.74 0.00 39.81 3.34
45 46 1.208052 CCAGTGGTCTCATCCATTCGT 59.792 52.381 0.00 0.00 39.81 3.85
46 47 2.430694 CCAGTGGTCTCATCCATTCGTA 59.569 50.000 0.00 0.00 39.81 3.43
47 48 3.491619 CCAGTGGTCTCATCCATTCGTAG 60.492 52.174 0.00 0.00 39.81 3.51
48 49 3.131223 CAGTGGTCTCATCCATTCGTAGT 59.869 47.826 0.00 0.00 39.81 2.73
49 50 3.381908 AGTGGTCTCATCCATTCGTAGTC 59.618 47.826 0.00 0.00 39.81 2.59
50 51 2.357952 TGGTCTCATCCATTCGTAGTCG 59.642 50.000 0.00 0.00 33.80 4.18
51 52 2.358267 GGTCTCATCCATTCGTAGTCGT 59.642 50.000 0.00 0.00 38.33 4.34
52 53 3.364062 GTCTCATCCATTCGTAGTCGTG 58.636 50.000 0.00 0.00 38.33 4.35
53 54 2.357952 TCTCATCCATTCGTAGTCGTGG 59.642 50.000 0.00 0.00 38.33 4.94
54 55 2.097036 TCATCCATTCGTAGTCGTGGT 58.903 47.619 0.00 0.00 35.58 4.16
55 56 2.494471 TCATCCATTCGTAGTCGTGGTT 59.506 45.455 0.00 0.00 35.58 3.67
56 57 2.357327 TCCATTCGTAGTCGTGGTTG 57.643 50.000 0.00 0.00 35.58 3.77
57 58 0.719465 CCATTCGTAGTCGTGGTTGC 59.281 55.000 0.00 0.00 38.33 4.17
58 59 1.671850 CCATTCGTAGTCGTGGTTGCT 60.672 52.381 0.00 0.00 38.33 3.91
59 60 1.390123 CATTCGTAGTCGTGGTTGCTG 59.610 52.381 0.00 0.00 38.33 4.41
60 61 0.319211 TTCGTAGTCGTGGTTGCTGG 60.319 55.000 0.00 0.00 38.33 4.85
61 62 1.006571 CGTAGTCGTGGTTGCTGGT 60.007 57.895 0.00 0.00 0.00 4.00
62 63 1.282248 CGTAGTCGTGGTTGCTGGTG 61.282 60.000 0.00 0.00 0.00 4.17
63 64 1.301401 TAGTCGTGGTTGCTGGTGC 60.301 57.895 0.00 0.00 40.20 5.01
64 65 2.725203 TAGTCGTGGTTGCTGGTGCC 62.725 60.000 0.00 0.00 38.71 5.01
67 68 2.672996 GTGGTTGCTGGTGCCGAT 60.673 61.111 0.00 0.00 38.71 4.18
68 69 2.359850 TGGTTGCTGGTGCCGATC 60.360 61.111 0.00 0.00 38.71 3.69
69 70 2.359850 GGTTGCTGGTGCCGATCA 60.360 61.111 0.00 0.00 38.71 2.92
70 71 2.401766 GGTTGCTGGTGCCGATCAG 61.402 63.158 0.00 0.00 38.71 2.90
71 72 1.672356 GTTGCTGGTGCCGATCAGT 60.672 57.895 0.00 0.00 38.71 3.41
72 73 1.073025 TTGCTGGTGCCGATCAGTT 59.927 52.632 0.00 0.00 38.71 3.16
73 74 1.236616 TTGCTGGTGCCGATCAGTTG 61.237 55.000 0.00 0.00 38.71 3.16
74 75 3.044059 GCTGGTGCCGATCAGTTGC 62.044 63.158 0.00 0.00 32.24 4.17
75 76 2.359850 TGGTGCCGATCAGTTGCC 60.360 61.111 0.00 0.00 0.00 4.52
76 77 2.359850 GGTGCCGATCAGTTGCCA 60.360 61.111 0.00 0.00 0.00 4.92
77 78 1.750399 GGTGCCGATCAGTTGCCAT 60.750 57.895 0.00 0.00 0.00 4.40
78 79 1.718757 GGTGCCGATCAGTTGCCATC 61.719 60.000 0.00 0.00 0.00 3.51
79 80 1.815003 TGCCGATCAGTTGCCATCG 60.815 57.895 0.00 0.00 41.34 3.84
90 91 2.976903 GCCATCGGCCTGCTCATC 60.977 66.667 0.00 0.00 44.06 2.92
91 92 2.507452 CCATCGGCCTGCTCATCA 59.493 61.111 0.00 0.00 0.00 3.07
92 93 1.890979 CCATCGGCCTGCTCATCAC 60.891 63.158 0.00 0.00 0.00 3.06
93 94 1.890979 CATCGGCCTGCTCATCACC 60.891 63.158 0.00 0.00 0.00 4.02
94 95 3.451556 ATCGGCCTGCTCATCACCG 62.452 63.158 0.00 0.00 45.15 4.94
95 96 4.147449 CGGCCTGCTCATCACCGA 62.147 66.667 0.00 0.00 46.71 4.69
96 97 2.507944 GGCCTGCTCATCACCGAT 59.492 61.111 0.00 0.00 0.00 4.18
97 98 1.153086 GGCCTGCTCATCACCGATT 60.153 57.895 0.00 0.00 0.00 3.34
98 99 0.749454 GGCCTGCTCATCACCGATTT 60.749 55.000 0.00 0.00 0.00 2.17
99 100 0.659957 GCCTGCTCATCACCGATTTC 59.340 55.000 0.00 0.00 0.00 2.17
100 101 2.013563 GCCTGCTCATCACCGATTTCA 61.014 52.381 0.00 0.00 0.00 2.69
101 102 2.569059 CCTGCTCATCACCGATTTCAT 58.431 47.619 0.00 0.00 0.00 2.57
102 103 2.547211 CCTGCTCATCACCGATTTCATC 59.453 50.000 0.00 0.00 0.00 2.92
117 118 6.479095 GATTTCATCGATCAATCTTCTCCC 57.521 41.667 15.36 0.00 0.00 4.30
118 119 4.342862 TTCATCGATCAATCTTCTCCCC 57.657 45.455 0.00 0.00 0.00 4.81
119 120 2.297315 TCATCGATCAATCTTCTCCCCG 59.703 50.000 0.00 0.00 0.00 5.73
120 121 0.389391 TCGATCAATCTTCTCCCCGC 59.611 55.000 0.00 0.00 0.00 6.13
121 122 0.601311 CGATCAATCTTCTCCCCGCC 60.601 60.000 0.00 0.00 0.00 6.13
122 123 0.469917 GATCAATCTTCTCCCCGCCA 59.530 55.000 0.00 0.00 0.00 5.69
123 124 0.918983 ATCAATCTTCTCCCCGCCAA 59.081 50.000 0.00 0.00 0.00 4.52
124 125 0.695924 TCAATCTTCTCCCCGCCAAA 59.304 50.000 0.00 0.00 0.00 3.28
125 126 0.811281 CAATCTTCTCCCCGCCAAAC 59.189 55.000 0.00 0.00 0.00 2.93
126 127 0.698818 AATCTTCTCCCCGCCAAACT 59.301 50.000 0.00 0.00 0.00 2.66
127 128 0.253327 ATCTTCTCCCCGCCAAACTC 59.747 55.000 0.00 0.00 0.00 3.01
128 129 0.836400 TCTTCTCCCCGCCAAACTCT 60.836 55.000 0.00 0.00 0.00 3.24
129 130 0.391793 CTTCTCCCCGCCAAACTCTC 60.392 60.000 0.00 0.00 0.00 3.20
130 131 1.125093 TTCTCCCCGCCAAACTCTCA 61.125 55.000 0.00 0.00 0.00 3.27
131 132 1.125093 TCTCCCCGCCAAACTCTCAA 61.125 55.000 0.00 0.00 0.00 3.02
132 133 0.250727 CTCCCCGCCAAACTCTCAAA 60.251 55.000 0.00 0.00 0.00 2.69
133 134 0.183971 TCCCCGCCAAACTCTCAAAA 59.816 50.000 0.00 0.00 0.00 2.44
134 135 0.598065 CCCCGCCAAACTCTCAAAAG 59.402 55.000 0.00 0.00 0.00 2.27
135 136 1.604604 CCCGCCAAACTCTCAAAAGA 58.395 50.000 0.00 0.00 0.00 2.52
136 137 2.162681 CCCGCCAAACTCTCAAAAGAT 58.837 47.619 0.00 0.00 0.00 2.40
137 138 3.343617 CCCGCCAAACTCTCAAAAGATA 58.656 45.455 0.00 0.00 0.00 1.98
138 139 3.947834 CCCGCCAAACTCTCAAAAGATAT 59.052 43.478 0.00 0.00 0.00 1.63
139 140 4.201950 CCCGCCAAACTCTCAAAAGATATG 60.202 45.833 0.00 0.00 0.00 1.78
140 141 4.396166 CCGCCAAACTCTCAAAAGATATGT 59.604 41.667 0.00 0.00 0.00 2.29
141 142 5.327091 CGCCAAACTCTCAAAAGATATGTG 58.673 41.667 0.00 0.00 0.00 3.21
142 143 5.106555 CGCCAAACTCTCAAAAGATATGTGT 60.107 40.000 0.00 0.00 0.00 3.72
143 144 6.092122 CGCCAAACTCTCAAAAGATATGTGTA 59.908 38.462 0.00 0.00 0.00 2.90
144 145 7.467623 GCCAAACTCTCAAAAGATATGTGTAG 58.532 38.462 0.00 0.00 0.00 2.74
145 146 7.467623 CCAAACTCTCAAAAGATATGTGTAGC 58.532 38.462 0.00 0.00 0.00 3.58
161 162 4.002906 TGTAGCAGACACGGATCTTTTT 57.997 40.909 0.00 0.00 31.20 1.94
162 163 3.994392 TGTAGCAGACACGGATCTTTTTC 59.006 43.478 0.00 0.00 31.20 2.29
164 165 1.798813 GCAGACACGGATCTTTTTCGT 59.201 47.619 0.00 0.00 37.64 3.85
165 166 2.159827 GCAGACACGGATCTTTTTCGTC 60.160 50.000 0.00 0.00 34.73 4.20
166 167 2.412089 CAGACACGGATCTTTTTCGTCC 59.588 50.000 0.00 0.00 34.73 4.79
182 183 1.146930 TCCAGGCATCTCCAATCGC 59.853 57.895 0.00 0.00 37.29 4.58
185 186 4.055654 GGCATCTCCAATCGCCTC 57.944 61.111 0.00 0.00 41.50 4.70
212 214 1.178534 TTGCGGCAAAGGAGAAAGGG 61.179 55.000 13.93 0.00 0.00 3.95
214 216 0.893727 GCGGCAAAGGAGAAAGGGAA 60.894 55.000 0.00 0.00 0.00 3.97
215 217 1.168714 CGGCAAAGGAGAAAGGGAAG 58.831 55.000 0.00 0.00 0.00 3.46
225 227 3.264706 GGAGAAAGGGAAGAAAGCCTAGT 59.735 47.826 0.00 0.00 0.00 2.57
226 228 4.257731 GAGAAAGGGAAGAAAGCCTAGTG 58.742 47.826 0.00 0.00 0.00 2.74
227 229 3.009584 AGAAAGGGAAGAAAGCCTAGTGG 59.990 47.826 0.00 0.00 0.00 4.00
229 231 3.200958 AGGGAAGAAAGCCTAGTGGTA 57.799 47.619 0.00 0.00 35.27 3.25
230 232 2.838813 AGGGAAGAAAGCCTAGTGGTAC 59.161 50.000 0.00 0.00 35.27 3.34
231 233 2.418334 GGGAAGAAAGCCTAGTGGTACG 60.418 54.545 0.00 0.00 35.27 3.67
232 234 2.233186 GGAAGAAAGCCTAGTGGTACGT 59.767 50.000 0.00 0.00 35.27 3.57
334 347 1.356938 CCCGAAAGCTAAAGGTCGAC 58.643 55.000 7.13 7.13 35.54 4.20
347 360 6.908284 GCTAAAGGTCGACGATATGATAGATC 59.092 42.308 9.92 0.00 0.00 2.75
354 525 5.104900 TCGACGATATGATAGATCAGGAGGA 60.105 44.000 0.00 0.00 40.64 3.71
367 538 2.716017 GGAGGAGTCGGCAGAGTGG 61.716 68.421 0.00 0.00 0.00 4.00
384 555 1.207593 GGCGTGAGAATGTGTGTGC 59.792 57.895 0.00 0.00 0.00 4.57
390 561 2.031560 GTGAGAATGTGTGTGCGTTCAA 59.968 45.455 0.00 0.00 36.97 2.69
525 701 1.748879 TATGCCGGCCTCACTTTGC 60.749 57.895 26.77 0.00 0.00 3.68
535 711 1.471684 CCTCACTTTGCCTGAATGAGC 59.528 52.381 0.00 0.00 36.32 4.26
550 729 4.756642 TGAATGAGCGAGTTGAGTTGATTT 59.243 37.500 0.00 0.00 0.00 2.17
551 730 5.931724 TGAATGAGCGAGTTGAGTTGATTTA 59.068 36.000 0.00 0.00 0.00 1.40
552 731 6.595326 TGAATGAGCGAGTTGAGTTGATTTAT 59.405 34.615 0.00 0.00 0.00 1.40
553 732 6.595772 ATGAGCGAGTTGAGTTGATTTATC 57.404 37.500 0.00 0.00 0.00 1.75
554 733 5.724328 TGAGCGAGTTGAGTTGATTTATCT 58.276 37.500 0.00 0.00 0.00 1.98
555 734 5.807520 TGAGCGAGTTGAGTTGATTTATCTC 59.192 40.000 0.00 0.00 0.00 2.75
594 775 2.391389 GCGCACTAGTTGTGGAGGC 61.391 63.158 0.30 0.00 46.27 4.70
640 821 2.502080 GACACGTCTCCGCACTCG 60.502 66.667 0.00 0.00 37.70 4.18
641 822 3.251318 GACACGTCTCCGCACTCGT 62.251 63.158 0.00 0.00 37.70 4.18
696 882 3.514777 CGGATATGTATGCCGCAGT 57.485 52.632 0.00 0.00 38.46 4.40
697 883 1.070821 CGGATATGTATGCCGCAGTG 58.929 55.000 0.00 0.00 38.46 3.66
698 884 1.605457 CGGATATGTATGCCGCAGTGT 60.605 52.381 0.00 0.00 38.46 3.55
699 885 2.352323 CGGATATGTATGCCGCAGTGTA 60.352 50.000 0.00 0.00 38.46 2.90
700 886 3.676049 CGGATATGTATGCCGCAGTGTAT 60.676 47.826 0.00 0.00 38.46 2.29
701 887 4.439563 CGGATATGTATGCCGCAGTGTATA 60.440 45.833 0.00 0.00 38.46 1.47
702 888 5.601662 GGATATGTATGCCGCAGTGTATAT 58.398 41.667 0.00 1.10 0.00 0.86
703 889 5.463392 GGATATGTATGCCGCAGTGTATATG 59.537 44.000 0.00 0.00 0.00 1.78
704 890 2.412870 TGTATGCCGCAGTGTATATGC 58.587 47.619 0.00 0.00 40.35 3.14
705 891 1.732259 GTATGCCGCAGTGTATATGCC 59.268 52.381 0.00 0.00 40.67 4.40
711 897 2.802816 CCGCAGTGTATATGCCTTTCTC 59.197 50.000 0.00 0.00 40.67 2.87
717 903 5.471456 CAGTGTATATGCCTTTCTCCATTCC 59.529 44.000 0.00 0.00 0.00 3.01
743 1238 3.823873 CCACTATCTATCTGCTTCCTCGT 59.176 47.826 0.00 0.00 0.00 4.18
795 1295 4.377897 CCACCTTGAATCCTTCGTATACC 58.622 47.826 0.00 0.00 0.00 2.73
823 1583 6.719301 AGTATAGTATAGTGCCGTATCCTGT 58.281 40.000 0.00 0.00 0.00 4.00
866 1626 0.595825 GAGTTGTCCGTCCGTTCGTT 60.596 55.000 0.00 0.00 0.00 3.85
872 1634 3.809400 CGTCCGTTCGTTCGCGTC 61.809 66.667 5.77 0.00 42.11 5.19
900 1662 1.251251 GCAATCTTGTCCTTGGCTGT 58.749 50.000 0.00 0.00 0.00 4.40
901 1663 1.068055 GCAATCTTGTCCTTGGCTGTG 60.068 52.381 0.00 0.00 0.00 3.66
935 1733 1.827969 GCTCTCTTCTTGGACCTAGCA 59.172 52.381 0.00 0.00 0.00 3.49
936 1734 2.159114 GCTCTCTTCTTGGACCTAGCAG 60.159 54.545 0.00 0.00 0.00 4.24
937 1735 3.360867 CTCTCTTCTTGGACCTAGCAGA 58.639 50.000 5.32 5.32 0.00 4.26
967 1765 1.144716 GGCGTCATCATCAGAGCCA 59.855 57.895 0.00 0.00 43.65 4.75
968 1766 0.879400 GGCGTCATCATCAGAGCCAG 60.879 60.000 0.00 0.00 43.65 4.85
969 1767 0.179089 GCGTCATCATCAGAGCCAGT 60.179 55.000 0.00 0.00 0.00 4.00
970 1768 1.741732 GCGTCATCATCAGAGCCAGTT 60.742 52.381 0.00 0.00 0.00 3.16
975 1799 3.118482 TCATCATCAGAGCCAGTTTCCTC 60.118 47.826 0.00 0.00 0.00 3.71
977 1801 0.107945 ATCAGAGCCAGTTTCCTCGC 60.108 55.000 0.00 0.00 33.39 5.03
985 1809 1.079750 AGTTTCCTCGCCGAGCTTC 60.080 57.895 9.01 0.00 0.00 3.86
1085 1916 3.581024 TGAATCAATGCTGAAACTGGC 57.419 42.857 0.00 0.00 34.49 4.85
1086 1917 2.095110 TGAATCAATGCTGAAACTGGCG 60.095 45.455 0.00 0.00 34.49 5.69
1087 1918 0.171903 ATCAATGCTGAAACTGGCGC 59.828 50.000 0.00 0.00 34.49 6.53
1309 2150 2.223294 CCTCAAGTACGTCTCCATCGTC 60.223 54.545 0.00 0.00 41.72 4.20
1417 2567 4.803426 CAGCTCGCCGACCAGGAC 62.803 72.222 0.00 0.00 45.00 3.85
1516 2666 3.378399 GAGCCTCAAGACCGCCCTC 62.378 68.421 0.00 0.00 0.00 4.30
1587 2737 2.496291 CCCCCGTCATCTCCGGTAC 61.496 68.421 0.00 0.00 43.98 3.34
1633 2783 4.019321 TCGGTCCATCCATCTTCTTTCTTT 60.019 41.667 0.00 0.00 35.57 2.52
1779 2946 0.524862 CCTTGTCCAAGCATCAGCAC 59.475 55.000 1.40 0.00 45.49 4.40
1799 2966 2.501723 ACGAATGTGAGCCTACTCCAAT 59.498 45.455 0.00 0.00 42.74 3.16
1803 2970 4.851639 ATGTGAGCCTACTCCAATTCTT 57.148 40.909 0.00 0.00 42.74 2.52
1862 3030 4.510038 AGATTTGTCTGCAACCAATGAC 57.490 40.909 0.00 0.00 33.82 3.06
1952 3123 9.884465 GTACTTTATAATGATGCTTGTGGATTC 57.116 33.333 5.43 0.00 0.00 2.52
1976 3147 5.520649 CGCAAAACTGGTAAAAGCCTTTTTA 59.479 36.000 7.88 0.00 37.64 1.52
2008 3179 4.865776 CAAAACTGGTAAAGATTTGGCGA 58.134 39.130 0.00 0.00 42.18 5.54
2012 3183 2.678336 CTGGTAAAGATTTGGCGACTCC 59.322 50.000 0.00 0.00 0.00 3.85
2013 3184 1.664151 GGTAAAGATTTGGCGACTCCG 59.336 52.381 0.00 0.00 37.80 4.63
2037 3210 5.863935 GCTAGTTAAAATGAGGCAAAACTGG 59.136 40.000 0.00 0.00 0.00 4.00
2053 3226 3.662759 ACTGGGAGGAAAAGTTGTCAA 57.337 42.857 0.00 0.00 0.00 3.18
2058 3231 6.209391 ACTGGGAGGAAAAGTTGTCAATAATG 59.791 38.462 0.00 0.00 0.00 1.90
2060 3233 6.208599 TGGGAGGAAAAGTTGTCAATAATGTC 59.791 38.462 0.00 0.00 0.00 3.06
2061 3234 6.434340 GGGAGGAAAAGTTGTCAATAATGTCT 59.566 38.462 0.00 0.00 0.00 3.41
2062 3235 7.610305 GGGAGGAAAAGTTGTCAATAATGTCTA 59.390 37.037 0.00 0.00 0.00 2.59
2086 3260 1.886542 CTTCACTTACCTGGCCCAAAC 59.113 52.381 0.00 0.00 0.00 2.93
2103 3277 2.386661 AACACTCCCAGTTATCAGCG 57.613 50.000 0.00 0.00 0.00 5.18
2104 3278 0.108138 ACACTCCCAGTTATCAGCGC 60.108 55.000 0.00 0.00 0.00 5.92
2105 3279 1.141881 ACTCCCAGTTATCAGCGCG 59.858 57.895 0.00 0.00 0.00 6.86
2131 3305 7.039363 GGTCTAGCAGGACTATATCATGACTTT 60.039 40.741 0.00 0.00 41.87 2.66
2155 3329 9.515020 TTTTATGTCTGAATTTCTGTCACAAAC 57.485 29.630 6.51 0.00 0.00 2.93
2160 3334 6.688813 GTCTGAATTTCTGTCACAAACTGAAC 59.311 38.462 0.00 0.00 43.14 3.18
2161 3335 6.599244 TCTGAATTTCTGTCACAAACTGAACT 59.401 34.615 0.00 0.00 43.14 3.01
2162 3336 6.554419 TGAATTTCTGTCACAAACTGAACTG 58.446 36.000 0.00 0.00 43.14 3.16
2163 3337 4.355543 TTTCTGTCACAAACTGAACTGC 57.644 40.909 0.00 0.00 43.14 4.40
2164 3338 2.288666 TCTGTCACAAACTGAACTGCC 58.711 47.619 0.00 0.00 33.39 4.85
2165 3339 2.092968 TCTGTCACAAACTGAACTGCCT 60.093 45.455 0.00 0.00 33.39 4.75
2166 3340 2.016318 TGTCACAAACTGAACTGCCTG 58.984 47.619 0.00 0.00 0.00 4.85
2167 3341 1.334869 GTCACAAACTGAACTGCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
2168 3342 1.211703 TCACAAACTGAACTGCCTGGA 59.788 47.619 0.00 0.00 0.00 3.86
2169 3343 1.605710 CACAAACTGAACTGCCTGGAG 59.394 52.381 0.00 0.00 0.00 3.86
2170 3344 1.490490 ACAAACTGAACTGCCTGGAGA 59.510 47.619 0.00 0.00 0.00 3.71
2171 3345 2.149578 CAAACTGAACTGCCTGGAGAG 58.850 52.381 0.00 0.00 0.00 3.20
2172 3346 0.689623 AACTGAACTGCCTGGAGAGG 59.310 55.000 0.00 0.00 43.19 3.69
2173 3347 0.472734 ACTGAACTGCCTGGAGAGGT 60.473 55.000 0.00 0.00 42.15 3.85
2174 3348 0.689623 CTGAACTGCCTGGAGAGGTT 59.310 55.000 0.00 0.00 42.15 3.50
2175 3349 1.072965 CTGAACTGCCTGGAGAGGTTT 59.927 52.381 0.00 0.00 42.15 3.27
2176 3350 1.072331 TGAACTGCCTGGAGAGGTTTC 59.928 52.381 0.00 0.00 42.15 2.78
2206 3380 7.417496 AGAAAGTATGACCGAACTGTTAAAC 57.583 36.000 0.00 0.00 0.00 2.01
2218 3392 5.555191 CGAACTGTTAAACGCGATTATATGC 59.445 40.000 15.93 3.52 0.00 3.14
2226 3400 8.953990 GTTAAACGCGATTATATGCTTTTGAAT 58.046 29.630 15.93 0.00 34.82 2.57
2238 3412 8.767478 ATATGCTTTTGAATTTCAGTTTCAGG 57.233 30.769 0.00 0.00 34.76 3.86
2249 3423 9.508567 GAATTTCAGTTTCAGGAATATTACAGC 57.491 33.333 0.00 0.00 0.00 4.40
2266 3441 2.161855 CAGCCACAGCCAAAATCACTA 58.838 47.619 0.00 0.00 41.25 2.74
2290 3481 1.522668 TCAGTTTTCATGCCGGACAG 58.477 50.000 5.05 0.00 0.00 3.51
2295 3505 3.689649 AGTTTTCATGCCGGACAGTAATC 59.310 43.478 5.05 0.00 0.00 1.75
2321 3532 9.740239 CATCACTTGAATTCGATTAAATCCAAT 57.260 29.630 0.04 0.00 0.00 3.16
2368 3580 7.816945 AACTCTTTTGAATTTGTGTGAACTG 57.183 32.000 0.00 0.00 0.00 3.16
2371 3583 4.734398 TTTGAATTTGTGTGAACTGCCT 57.266 36.364 0.00 0.00 0.00 4.75
2372 3584 5.843673 TTTGAATTTGTGTGAACTGCCTA 57.156 34.783 0.00 0.00 0.00 3.93
2378 3598 8.081633 TGAATTTGTGTGAACTGCCTAAAATAG 58.918 33.333 0.00 0.00 0.00 1.73
2387 3607 6.206634 TGAACTGCCTAAAATAGTTTGACCAG 59.793 38.462 0.00 4.47 34.99 4.00
2391 3611 5.475564 TGCCTAAAATAGTTTGACCAGAACC 59.524 40.000 0.00 0.00 0.00 3.62
2408 3628 6.187682 CCAGAACCCAATTATTTCAGTACCT 58.812 40.000 0.00 0.00 0.00 3.08
2425 3645 6.732896 AGTACCTACTGAAATGATCCGAAT 57.267 37.500 0.00 0.00 34.72 3.34
2426 3646 7.125792 AGTACCTACTGAAATGATCCGAATT 57.874 36.000 0.00 0.00 34.72 2.17
2427 3647 7.565680 AGTACCTACTGAAATGATCCGAATTT 58.434 34.615 0.00 0.00 34.72 1.82
2428 3648 6.927294 ACCTACTGAAATGATCCGAATTTC 57.073 37.500 9.12 9.12 42.07 2.17
2429 3649 6.653989 ACCTACTGAAATGATCCGAATTTCT 58.346 36.000 14.59 2.91 42.17 2.52
2430 3650 6.540189 ACCTACTGAAATGATCCGAATTTCTG 59.460 38.462 16.02 16.02 42.17 3.02
2431 3651 6.763135 CCTACTGAAATGATCCGAATTTCTGA 59.237 38.462 20.86 10.38 41.66 3.27
2432 3652 7.280876 CCTACTGAAATGATCCGAATTTCTGAA 59.719 37.037 20.86 0.00 41.66 3.02
2433 3653 7.452880 ACTGAAATGATCCGAATTTCTGAAA 57.547 32.000 20.86 5.15 41.66 2.69
2434 3654 8.059798 ACTGAAATGATCCGAATTTCTGAAAT 57.940 30.769 20.86 9.76 41.66 2.17
2435 3655 8.526147 ACTGAAATGATCCGAATTTCTGAAATT 58.474 29.630 24.16 24.16 41.66 1.82
2436 3656 9.362539 CTGAAATGATCCGAATTTCTGAAATTT 57.637 29.630 24.57 12.26 41.66 1.82
2437 3657 9.709495 TGAAATGATCCGAATTTCTGAAATTTT 57.291 25.926 24.57 14.55 42.17 1.82
2438 3658 9.962759 GAAATGATCCGAATTTCTGAAATTTTG 57.037 29.630 24.57 19.82 40.97 2.44
2439 3659 9.492973 AAATGATCCGAATTTCTGAAATTTTGT 57.507 25.926 24.57 13.81 40.97 2.83
2440 3660 9.492973 AATGATCCGAATTTCTGAAATTTTGTT 57.507 25.926 24.57 15.27 40.97 2.83
2444 3664 8.885494 TCCGAATTTCTGAAATTTTGTTGAAT 57.115 26.923 24.57 4.23 40.97 2.57
2480 3858 8.570068 TTAAACTAGTTTCTGTCACCTGTTTT 57.430 30.769 23.76 0.00 34.23 2.43
2482 3860 7.549615 AACTAGTTTCTGTCACCTGTTTTAC 57.450 36.000 1.12 0.00 0.00 2.01
2483 3861 6.053650 ACTAGTTTCTGTCACCTGTTTTACC 58.946 40.000 0.00 0.00 0.00 2.85
2484 3862 5.112129 AGTTTCTGTCACCTGTTTTACCT 57.888 39.130 0.00 0.00 0.00 3.08
2485 3863 5.506708 AGTTTCTGTCACCTGTTTTACCTT 58.493 37.500 0.00 0.00 0.00 3.50
2486 3864 5.357032 AGTTTCTGTCACCTGTTTTACCTTG 59.643 40.000 0.00 0.00 0.00 3.61
2487 3865 4.764050 TCTGTCACCTGTTTTACCTTGA 57.236 40.909 0.00 0.00 0.00 3.02
2488 3866 5.304686 TCTGTCACCTGTTTTACCTTGAT 57.695 39.130 0.00 0.00 0.00 2.57
2489 3867 6.428083 TCTGTCACCTGTTTTACCTTGATA 57.572 37.500 0.00 0.00 0.00 2.15
2490 3868 6.228258 TCTGTCACCTGTTTTACCTTGATAC 58.772 40.000 0.00 0.00 0.00 2.24
2491 3869 6.042781 TCTGTCACCTGTTTTACCTTGATACT 59.957 38.462 0.00 0.00 0.00 2.12
2492 3870 6.597562 TGTCACCTGTTTTACCTTGATACTT 58.402 36.000 0.00 0.00 0.00 2.24
2493 3871 7.057894 TGTCACCTGTTTTACCTTGATACTTT 58.942 34.615 0.00 0.00 0.00 2.66
2494 3872 8.212312 TGTCACCTGTTTTACCTTGATACTTTA 58.788 33.333 0.00 0.00 0.00 1.85
2521 3899 1.820519 TGTTCTGCCATGCTCATTTCC 59.179 47.619 0.00 0.00 0.00 3.13
2840 4221 7.829725 TCAGTATGAAATGAATCCTTGGTTTG 58.170 34.615 0.00 0.00 45.97 2.93
2876 4262 5.934781 TGCCAAAATTACACAGGGAAATTT 58.065 33.333 0.00 0.00 35.01 1.82
2975 4362 3.611766 ACAGTGCAATCCAGGTACTAC 57.388 47.619 0.00 0.00 36.02 2.73
2976 4363 3.173965 ACAGTGCAATCCAGGTACTACT 58.826 45.455 0.00 0.00 36.02 2.57
2977 4364 3.583086 ACAGTGCAATCCAGGTACTACTT 59.417 43.478 0.00 0.00 36.02 2.24
2978 4365 3.935203 CAGTGCAATCCAGGTACTACTTG 59.065 47.826 0.00 0.00 36.02 3.16
2980 4367 4.471386 AGTGCAATCCAGGTACTACTTGAT 59.529 41.667 0.00 0.00 36.02 2.57
2981 4368 5.045578 AGTGCAATCCAGGTACTACTTGATT 60.046 40.000 0.00 0.00 36.02 2.57
2983 4370 5.880332 TGCAATCCAGGTACTACTTGATTTC 59.120 40.000 0.00 0.00 36.02 2.17
2985 4372 6.037610 GCAATCCAGGTACTACTTGATTTCAG 59.962 42.308 0.00 0.00 36.02 3.02
2986 4373 5.086104 TCCAGGTACTACTTGATTTCAGC 57.914 43.478 0.00 0.00 36.02 4.26
2987 4374 4.530553 TCCAGGTACTACTTGATTTCAGCA 59.469 41.667 0.00 0.00 36.02 4.41
3019 4409 7.873739 AGTTCAGTTGCTATGTTATTTTTGC 57.126 32.000 0.00 0.00 0.00 3.68
3047 4437 2.459060 TCATGCTGTTTGGGCAAATG 57.541 45.000 0.00 0.00 43.14 2.32
3089 4480 5.766150 TGCAGCTTGCTTTTACTTCTTTA 57.234 34.783 9.12 0.00 45.31 1.85
3155 4546 7.666623 CCTATTTAACCAAACACCATGACTTT 58.333 34.615 0.00 0.00 0.00 2.66
3237 4628 6.479095 TTTTGAAACAGAGGCAAAACTTTG 57.521 33.333 0.00 0.00 36.80 2.77
3238 4629 4.799564 TGAAACAGAGGCAAAACTTTGT 57.200 36.364 4.23 0.00 40.24 2.83
3362 4753 7.328982 CAGTACTAATGCTAGCTGATGATTCTG 59.671 40.741 17.23 11.33 0.00 3.02
3363 4754 4.996122 ACTAATGCTAGCTGATGATTCTGC 59.004 41.667 17.23 0.00 44.62 4.26
3364 4755 2.994186 TGCTAGCTGATGATTCTGCA 57.006 45.000 17.23 0.00 46.14 4.41
3365 4756 3.487120 TGCTAGCTGATGATTCTGCAT 57.513 42.857 17.23 0.00 46.14 3.96
3368 4788 3.609644 GCTAGCTGATGATTCTGCATTGC 60.610 47.826 7.70 0.46 46.14 3.56
3395 4815 8.461222 TCTGCATTGACCATTTTATTCAGTAAG 58.539 33.333 0.00 0.00 0.00 2.34
3406 4826 9.760660 CATTTTATTCAGTAAGCAGACACTAAC 57.239 33.333 0.00 0.00 0.00 2.34
3493 4914 2.281484 GTGGTCGGAAGCCAAGCA 60.281 61.111 0.00 0.00 38.62 3.91
3559 4980 4.257654 TGCTTCCCGCGGGTGAAA 62.258 61.111 41.57 28.02 43.27 2.69
4039 5460 0.402887 TCTACACCGACCTCACCTCA 59.597 55.000 0.00 0.00 0.00 3.86
4060 5481 3.423154 GTGCCCGCCAACTTCTCG 61.423 66.667 0.00 0.00 0.00 4.04
4342 5763 2.408022 GATGCCGACTACGAGCGT 59.592 61.111 0.00 0.00 42.66 5.07
4348 5769 0.377554 CCGACTACGAGCGTGAGAAT 59.622 55.000 5.69 0.00 42.66 2.40
4417 5838 4.961511 GACACCCACGACAGCGCA 62.962 66.667 11.47 0.00 42.48 6.09
4441 5862 1.585521 CGTGGAGATACGCGTGGAC 60.586 63.158 24.59 12.84 39.35 4.02
4444 5865 0.963856 TGGAGATACGCGTGGACAGT 60.964 55.000 24.59 0.00 0.00 3.55
4447 5868 0.963856 AGATACGCGTGGACAGTCCA 60.964 55.000 24.59 19.21 45.98 4.02
4458 5879 3.052082 CAGTCCAACGGGCAGCAG 61.052 66.667 0.00 0.00 0.00 4.24
4474 5895 0.391130 GCAGCAGGACGAACACCATA 60.391 55.000 0.00 0.00 0.00 2.74
4531 5958 1.208165 GGGTGAGGTTCCTGGTGGAT 61.208 60.000 0.00 0.00 42.81 3.41
4624 6051 1.825191 CACGGCCTTCATCATGGGG 60.825 63.158 0.00 0.00 0.00 4.96
4681 6108 4.804420 AGGAGGCTGGCCATCGGA 62.804 66.667 5.51 0.00 38.92 4.55
4684 6111 1.557269 GGAGGCTGGCCATCGGATAT 61.557 60.000 5.51 0.00 38.92 1.63
4687 6114 1.377725 GCTGGCCATCGGATATGGG 60.378 63.158 5.51 0.00 39.53 4.00
4690 6117 1.839994 CTGGCCATCGGATATGGGTAT 59.160 52.381 5.51 0.00 39.53 2.73
4732 6159 4.057428 AGCCCAGACGTCGTGCTC 62.057 66.667 19.32 6.70 0.00 4.26
4774 6201 0.467474 TCGAGGTCGGCATGGTCTAT 60.467 55.000 0.00 0.00 40.29 1.98
4845 6272 5.449041 CGGACATGCTGCTGTAAATTGTAAT 60.449 40.000 0.00 0.00 0.00 1.89
4857 6284 2.087501 ATTGTAATGTGACGGCGTGA 57.912 45.000 21.19 5.98 0.00 4.35
4874 6301 3.431912 GCGTGATGCGTGATGGAAATATA 59.568 43.478 0.00 0.00 43.66 0.86
4875 6302 4.093408 GCGTGATGCGTGATGGAAATATAT 59.907 41.667 0.00 0.00 43.66 0.86
4876 6303 5.553721 CGTGATGCGTGATGGAAATATATG 58.446 41.667 0.00 0.00 35.54 1.78
4877 6304 5.120674 CGTGATGCGTGATGGAAATATATGT 59.879 40.000 0.00 0.00 35.54 2.29
4881 6308 7.861872 TGATGCGTGATGGAAATATATGTTTTG 59.138 33.333 0.00 0.00 0.00 2.44
4882 6309 7.326968 TGCGTGATGGAAATATATGTTTTGA 57.673 32.000 0.00 0.00 0.00 2.69
4915 6345 0.802994 AAAATCGTATGCGGTCGCGA 60.803 50.000 3.71 3.71 45.51 5.87
4927 6357 1.019673 GGTCGCGAGGTGATAGTGTA 58.980 55.000 10.24 0.00 0.00 2.90
4963 6393 4.181010 CCCAGTGGCGGAGGATGG 62.181 72.222 2.61 0.00 0.00 3.51
4964 6394 3.083349 CCAGTGGCGGAGGATGGA 61.083 66.667 0.00 0.00 32.55 3.41
4965 6395 2.187946 CAGTGGCGGAGGATGGAC 59.812 66.667 0.00 0.00 0.00 4.02
4966 6396 2.284625 AGTGGCGGAGGATGGACA 60.285 61.111 0.00 0.00 0.00 4.02
4967 6397 1.918293 AGTGGCGGAGGATGGACAA 60.918 57.895 0.00 0.00 0.00 3.18
4968 6398 1.002624 GTGGCGGAGGATGGACAAA 60.003 57.895 0.00 0.00 0.00 2.83
4969 6399 0.608035 GTGGCGGAGGATGGACAAAA 60.608 55.000 0.00 0.00 0.00 2.44
4970 6400 0.322456 TGGCGGAGGATGGACAAAAG 60.322 55.000 0.00 0.00 0.00 2.27
4971 6401 0.322546 GGCGGAGGATGGACAAAAGT 60.323 55.000 0.00 0.00 0.00 2.66
4972 6402 1.534729 GCGGAGGATGGACAAAAGTT 58.465 50.000 0.00 0.00 0.00 2.66
4973 6403 1.200020 GCGGAGGATGGACAAAAGTTG 59.800 52.381 0.00 0.00 0.00 3.16
4974 6404 2.778299 CGGAGGATGGACAAAAGTTGA 58.222 47.619 0.00 0.00 0.00 3.18
4975 6405 2.744202 CGGAGGATGGACAAAAGTTGAG 59.256 50.000 0.00 0.00 0.00 3.02
4976 6406 3.084786 GGAGGATGGACAAAAGTTGAGG 58.915 50.000 0.00 0.00 0.00 3.86
4977 6407 3.498661 GGAGGATGGACAAAAGTTGAGGT 60.499 47.826 0.00 0.00 0.00 3.85
4978 6408 4.263331 GGAGGATGGACAAAAGTTGAGGTA 60.263 45.833 0.00 0.00 0.00 3.08
4979 6409 4.911390 AGGATGGACAAAAGTTGAGGTAG 58.089 43.478 0.00 0.00 0.00 3.18
4980 6410 4.010349 GGATGGACAAAAGTTGAGGTAGG 58.990 47.826 0.00 0.00 0.00 3.18
4981 6411 3.502123 TGGACAAAAGTTGAGGTAGGG 57.498 47.619 0.00 0.00 0.00 3.53
4982 6412 2.160205 GGACAAAAGTTGAGGTAGGGC 58.840 52.381 0.00 0.00 0.00 5.19
4983 6413 2.224793 GGACAAAAGTTGAGGTAGGGCT 60.225 50.000 0.00 0.00 0.00 5.19
4984 6414 3.008704 GGACAAAAGTTGAGGTAGGGCTA 59.991 47.826 0.00 0.00 0.00 3.93
4985 6415 4.506095 GGACAAAAGTTGAGGTAGGGCTAA 60.506 45.833 0.00 0.00 0.00 3.09
4986 6416 4.395625 ACAAAAGTTGAGGTAGGGCTAAC 58.604 43.478 0.00 0.00 0.00 2.34
4987 6417 4.104261 ACAAAAGTTGAGGTAGGGCTAACT 59.896 41.667 0.00 0.00 35.44 2.24
4988 6418 4.995624 AAAGTTGAGGTAGGGCTAACTT 57.004 40.909 0.00 0.00 41.74 2.66
4989 6419 4.995624 AAGTTGAGGTAGGGCTAACTTT 57.004 40.909 0.00 0.00 38.11 2.66
4990 6420 4.287766 AGTTGAGGTAGGGCTAACTTTG 57.712 45.455 0.00 0.00 32.30 2.77
4991 6421 3.009143 AGTTGAGGTAGGGCTAACTTTGG 59.991 47.826 0.00 0.00 32.30 3.28
4992 6422 2.627933 TGAGGTAGGGCTAACTTTGGT 58.372 47.619 0.00 0.00 32.30 3.67
4993 6423 2.983898 TGAGGTAGGGCTAACTTTGGTT 59.016 45.455 0.00 0.00 32.30 3.67
4994 6424 4.169666 TGAGGTAGGGCTAACTTTGGTTA 58.830 43.478 0.00 0.00 32.30 2.85
4995 6425 4.019950 TGAGGTAGGGCTAACTTTGGTTAC 60.020 45.833 0.00 0.00 32.30 2.50
4996 6426 4.173594 AGGTAGGGCTAACTTTGGTTACT 58.826 43.478 0.00 0.00 36.92 2.24
4997 6427 4.019591 AGGTAGGGCTAACTTTGGTTACTG 60.020 45.833 0.00 0.00 36.92 2.74
4998 6428 3.434940 AGGGCTAACTTTGGTTACTGG 57.565 47.619 0.00 0.00 36.92 4.00
4999 6429 1.816835 GGGCTAACTTTGGTTACTGGC 59.183 52.381 0.00 0.00 36.92 4.85
5000 6430 1.816835 GGCTAACTTTGGTTACTGGCC 59.183 52.381 0.00 0.00 38.59 5.36
5001 6431 2.510613 GCTAACTTTGGTTACTGGCCA 58.489 47.619 4.71 4.71 36.92 5.36
5002 6432 2.228103 GCTAACTTTGGTTACTGGCCAC 59.772 50.000 0.00 0.00 36.92 5.01
5003 6433 1.699730 AACTTTGGTTACTGGCCACC 58.300 50.000 0.00 1.09 35.46 4.61
5004 6434 0.536460 ACTTTGGTTACTGGCCACCG 60.536 55.000 0.00 0.00 35.60 4.94
5005 6435 1.862602 CTTTGGTTACTGGCCACCGC 61.863 60.000 0.00 0.00 35.60 5.68
5025 6455 3.613702 CCGTTGCGCCGATACGTC 61.614 66.667 4.18 0.00 33.68 4.34
5027 6457 4.261495 GTTGCGCCGATACGTCGC 62.261 66.667 12.19 12.19 46.32 5.19
5031 6461 3.320078 CGCCGATACGTCGCCTTG 61.320 66.667 0.00 0.00 46.32 3.61
5032 6462 3.627218 GCCGATACGTCGCCTTGC 61.627 66.667 0.00 0.00 46.32 4.01
5033 6463 2.960129 CCGATACGTCGCCTTGCC 60.960 66.667 0.00 0.00 46.32 4.52
5034 6464 2.960129 CGATACGTCGCCTTGCCC 60.960 66.667 0.00 0.00 41.49 5.36
5035 6465 2.499685 GATACGTCGCCTTGCCCT 59.500 61.111 0.00 0.00 0.00 5.19
5036 6466 1.737816 GATACGTCGCCTTGCCCTA 59.262 57.895 0.00 0.00 0.00 3.53
5037 6467 0.596859 GATACGTCGCCTTGCCCTAC 60.597 60.000 0.00 0.00 0.00 3.18
5038 6468 2.024590 ATACGTCGCCTTGCCCTACC 62.025 60.000 0.00 0.00 0.00 3.18
5039 6469 3.771160 CGTCGCCTTGCCCTACCT 61.771 66.667 0.00 0.00 0.00 3.08
5040 6470 2.125106 GTCGCCTTGCCCTACCTG 60.125 66.667 0.00 0.00 0.00 4.00
5041 6471 3.399181 TCGCCTTGCCCTACCTGG 61.399 66.667 0.00 0.00 0.00 4.45
5042 6472 3.717294 CGCCTTGCCCTACCTGGT 61.717 66.667 4.05 4.05 0.00 4.00
5043 6473 2.272471 GCCTTGCCCTACCTGGTC 59.728 66.667 0.63 0.00 0.00 4.02
5044 6474 2.998949 CCTTGCCCTACCTGGTCC 59.001 66.667 0.63 0.00 0.00 4.46
5045 6475 1.616628 CCTTGCCCTACCTGGTCCT 60.617 63.158 0.63 0.00 0.00 3.85
5046 6476 1.627297 CCTTGCCCTACCTGGTCCTC 61.627 65.000 0.63 0.00 0.00 3.71
5047 6477 1.615424 TTGCCCTACCTGGTCCTCC 60.615 63.158 0.63 0.00 0.00 4.30
5048 6478 2.040606 GCCCTACCTGGTCCTCCA 59.959 66.667 0.63 0.00 42.05 3.86
5049 6479 2.368011 GCCCTACCTGGTCCTCCAC 61.368 68.421 0.63 0.00 39.03 4.02
5114 6544 0.031716 TCTCCCACATGAGCTAGCCT 60.032 55.000 12.13 0.00 32.22 4.58
5115 6545 0.835941 CTCCCACATGAGCTAGCCTT 59.164 55.000 12.13 0.00 0.00 4.35
5159 6593 3.076092 CCCTCTGCAACAGGAGCT 58.924 61.111 12.23 0.00 31.91 4.09
5174 6608 3.698040 CAGGAGCTTTGTTGCAATATCCT 59.302 43.478 9.56 9.56 35.26 3.24
5239 6679 7.337184 TGCAGTCGTAACAAAATCCCATTATTA 59.663 33.333 0.00 0.00 0.00 0.98
5262 6702 1.613317 CCCGTCCATACAGAGGTGCA 61.613 60.000 0.00 0.00 0.00 4.57
5268 6708 1.552337 CCATACAGAGGTGCAGTGAGT 59.448 52.381 0.00 0.00 0.00 3.41
5298 6738 1.154035 CTCCCGTTGCAAAATCGGC 60.154 57.895 18.73 0.00 42.48 5.54
5445 6885 5.817816 GGACAGACTGGTACTAAATCATTGG 59.182 44.000 7.51 0.00 0.00 3.16
5579 7019 3.153919 AGGGCTAAGTTTTCGATGCAAA 58.846 40.909 0.00 0.00 0.00 3.68
5596 7036 8.196103 TCGATGCAAATGATTTTAATCCATCAA 58.804 29.630 13.84 0.54 33.13 2.57
5635 7075 8.654230 GAGCATCTTAGACTATTTGATGAACA 57.346 34.615 17.49 0.00 37.33 3.18
5660 7100 9.906660 CAAACAAGAAACCAGCTTTTATGTATA 57.093 29.630 0.00 0.00 0.00 1.47
5696 7138 9.807649 GCATCTTAAACCATTTGATGAACTAAT 57.192 29.630 0.00 0.00 37.33 1.73
5741 7183 7.600231 ATGTTGGATTCAATGGCAATATACA 57.400 32.000 0.00 0.00 35.10 2.29
5754 7196 6.355747 TGGCAATATACATGTGATGTGAAGA 58.644 36.000 9.11 0.00 44.60 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.202245 TGCTCAAGTTCCATACTACCAC 57.798 45.455 0.00 0.00 35.54 4.16
1 2 4.769688 CATGCTCAAGTTCCATACTACCA 58.230 43.478 0.00 0.00 35.54 3.25
3 4 3.561725 GGCATGCTCAAGTTCCATACTAC 59.438 47.826 18.92 0.00 35.54 2.73
4 5 3.433598 GGGCATGCTCAAGTTCCATACTA 60.434 47.826 18.92 0.00 35.54 1.82
5 6 2.648059 GGCATGCTCAAGTTCCATACT 58.352 47.619 18.92 0.00 39.32 2.12
6 7 1.678101 GGGCATGCTCAAGTTCCATAC 59.322 52.381 18.92 0.00 0.00 2.39
7 8 1.284491 TGGGCATGCTCAAGTTCCATA 59.716 47.619 20.39 0.00 0.00 2.74
8 9 0.040058 TGGGCATGCTCAAGTTCCAT 59.960 50.000 20.39 0.00 0.00 3.41
9 10 0.609957 CTGGGCATGCTCAAGTTCCA 60.610 55.000 23.01 15.02 0.00 3.53
11 12 0.524862 CACTGGGCATGCTCAAGTTC 59.475 55.000 23.01 0.00 0.00 3.01
12 13 0.896940 CCACTGGGCATGCTCAAGTT 60.897 55.000 23.01 5.91 0.00 2.66
13 14 1.303888 CCACTGGGCATGCTCAAGT 60.304 57.895 23.01 18.07 0.00 3.16
14 15 1.303888 ACCACTGGGCATGCTCAAG 60.304 57.895 23.01 16.63 37.90 3.02
15 16 1.303561 GACCACTGGGCATGCTCAA 60.304 57.895 23.01 5.59 37.90 3.02
16 17 2.189191 GAGACCACTGGGCATGCTCA 62.189 60.000 21.39 21.39 37.90 4.26
17 18 1.451028 GAGACCACTGGGCATGCTC 60.451 63.158 18.92 15.59 37.90 4.26
18 19 1.569030 ATGAGACCACTGGGCATGCT 61.569 55.000 18.92 0.00 37.90 3.79
19 20 1.077212 ATGAGACCACTGGGCATGC 60.077 57.895 9.90 9.90 37.90 4.06
20 21 0.465097 GGATGAGACCACTGGGCATG 60.465 60.000 2.97 0.00 37.90 4.06
21 22 0.915872 TGGATGAGACCACTGGGCAT 60.916 55.000 2.97 1.95 37.90 4.40
22 23 0.915872 ATGGATGAGACCACTGGGCA 60.916 55.000 2.97 0.00 43.03 5.36
23 24 0.257039 AATGGATGAGACCACTGGGC 59.743 55.000 0.00 0.00 43.03 5.36
24 25 1.473965 CGAATGGATGAGACCACTGGG 60.474 57.143 0.00 0.00 43.03 4.45
25 26 1.208052 ACGAATGGATGAGACCACTGG 59.792 52.381 0.00 0.00 43.03 4.00
26 27 2.680312 ACGAATGGATGAGACCACTG 57.320 50.000 0.00 0.00 43.03 3.66
27 28 3.366396 ACTACGAATGGATGAGACCACT 58.634 45.455 0.00 0.00 43.03 4.00
28 29 3.707793 GACTACGAATGGATGAGACCAC 58.292 50.000 0.00 0.00 43.03 4.16
29 30 2.357952 CGACTACGAATGGATGAGACCA 59.642 50.000 0.00 0.00 42.17 4.02
30 31 2.358267 ACGACTACGAATGGATGAGACC 59.642 50.000 0.00 0.00 42.66 3.85
31 32 3.364062 CACGACTACGAATGGATGAGAC 58.636 50.000 0.00 0.00 42.66 3.36
32 33 2.357952 CCACGACTACGAATGGATGAGA 59.642 50.000 0.00 0.00 42.66 3.27
33 34 2.099263 ACCACGACTACGAATGGATGAG 59.901 50.000 0.00 0.00 42.66 2.90
34 35 2.097036 ACCACGACTACGAATGGATGA 58.903 47.619 0.00 0.00 42.66 2.92
35 36 2.579207 ACCACGACTACGAATGGATG 57.421 50.000 0.00 0.00 42.66 3.51
36 37 2.888594 CAACCACGACTACGAATGGAT 58.111 47.619 0.00 0.00 42.66 3.41
37 38 1.670674 GCAACCACGACTACGAATGGA 60.671 52.381 0.00 0.00 42.66 3.41
38 39 0.719465 GCAACCACGACTACGAATGG 59.281 55.000 0.00 0.00 42.66 3.16
39 40 1.390123 CAGCAACCACGACTACGAATG 59.610 52.381 0.00 0.00 42.66 2.67
40 41 1.671850 CCAGCAACCACGACTACGAAT 60.672 52.381 0.00 0.00 42.66 3.34
41 42 0.319211 CCAGCAACCACGACTACGAA 60.319 55.000 0.00 0.00 42.66 3.85
42 43 1.287815 CCAGCAACCACGACTACGA 59.712 57.895 0.00 0.00 42.66 3.43
43 44 1.006571 ACCAGCAACCACGACTACG 60.007 57.895 0.00 0.00 45.75 3.51
44 45 1.566018 GCACCAGCAACCACGACTAC 61.566 60.000 0.00 0.00 41.58 2.73
45 46 1.301401 GCACCAGCAACCACGACTA 60.301 57.895 0.00 0.00 41.58 2.59
46 47 2.591715 GCACCAGCAACCACGACT 60.592 61.111 0.00 0.00 41.58 4.18
47 48 3.660111 GGCACCAGCAACCACGAC 61.660 66.667 0.00 0.00 44.61 4.34
50 51 2.672996 ATCGGCACCAGCAACCAC 60.673 61.111 0.00 0.00 44.61 4.16
51 52 2.359850 GATCGGCACCAGCAACCA 60.360 61.111 0.00 0.00 44.61 3.67
52 53 2.359850 TGATCGGCACCAGCAACC 60.360 61.111 0.00 0.00 44.61 3.77
53 54 1.237285 AACTGATCGGCACCAGCAAC 61.237 55.000 0.00 0.00 44.61 4.17
54 55 1.073025 AACTGATCGGCACCAGCAA 59.927 52.632 0.00 0.00 44.61 3.91
55 56 1.672030 CAACTGATCGGCACCAGCA 60.672 57.895 0.00 0.00 44.61 4.41
56 57 3.044059 GCAACTGATCGGCACCAGC 62.044 63.158 0.00 0.00 41.10 4.85
57 58 2.401766 GGCAACTGATCGGCACCAG 61.402 63.158 0.00 0.00 36.53 4.00
58 59 2.359850 GGCAACTGATCGGCACCA 60.360 61.111 0.00 0.00 0.00 4.17
59 60 1.718757 GATGGCAACTGATCGGCACC 61.719 60.000 0.00 1.15 40.86 5.01
60 61 1.723870 GATGGCAACTGATCGGCAC 59.276 57.895 0.00 0.00 40.86 5.01
61 62 1.815003 CGATGGCAACTGATCGGCA 60.815 57.895 0.00 0.00 42.39 5.69
62 63 3.017323 CGATGGCAACTGATCGGC 58.983 61.111 0.00 0.00 38.23 5.54
74 75 1.890979 GTGATGAGCAGGCCGATGG 60.891 63.158 0.00 0.00 0.00 3.51
75 76 1.890979 GGTGATGAGCAGGCCGATG 60.891 63.158 0.00 0.00 0.00 3.84
76 77 2.507944 GGTGATGAGCAGGCCGAT 59.492 61.111 0.00 0.00 0.00 4.18
77 78 4.147449 CGGTGATGAGCAGGCCGA 62.147 66.667 0.00 0.00 44.57 5.54
78 79 2.930385 AATCGGTGATGAGCAGGCCG 62.930 60.000 0.00 0.00 43.32 6.13
79 80 0.749454 AAATCGGTGATGAGCAGGCC 60.749 55.000 0.00 0.00 0.00 5.19
80 81 0.659957 GAAATCGGTGATGAGCAGGC 59.340 55.000 0.00 0.00 0.00 4.85
81 82 2.028420 TGAAATCGGTGATGAGCAGG 57.972 50.000 0.00 0.00 0.00 4.85
82 83 3.874400 GATGAAATCGGTGATGAGCAG 57.126 47.619 0.00 0.00 31.13 4.24
94 95 5.411053 GGGGAGAAGATTGATCGATGAAATC 59.589 44.000 17.13 17.13 40.89 2.17
95 96 5.312079 GGGGAGAAGATTGATCGATGAAAT 58.688 41.667 0.54 2.24 0.00 2.17
96 97 4.708177 GGGGAGAAGATTGATCGATGAAA 58.292 43.478 0.54 0.00 0.00 2.69
97 98 3.243873 CGGGGAGAAGATTGATCGATGAA 60.244 47.826 0.54 0.00 0.00 2.57
98 99 2.297315 CGGGGAGAAGATTGATCGATGA 59.703 50.000 0.54 0.00 0.00 2.92
99 100 2.681706 CGGGGAGAAGATTGATCGATG 58.318 52.381 0.54 0.00 0.00 3.84
100 101 1.001406 GCGGGGAGAAGATTGATCGAT 59.999 52.381 0.00 0.00 0.00 3.59
101 102 0.389391 GCGGGGAGAAGATTGATCGA 59.611 55.000 0.00 0.00 0.00 3.59
102 103 0.601311 GGCGGGGAGAAGATTGATCG 60.601 60.000 0.00 0.00 0.00 3.69
103 104 0.469917 TGGCGGGGAGAAGATTGATC 59.530 55.000 0.00 0.00 0.00 2.92
104 105 0.918983 TTGGCGGGGAGAAGATTGAT 59.081 50.000 0.00 0.00 0.00 2.57
105 106 0.695924 TTTGGCGGGGAGAAGATTGA 59.304 50.000 0.00 0.00 0.00 2.57
106 107 0.811281 GTTTGGCGGGGAGAAGATTG 59.189 55.000 0.00 0.00 0.00 2.67
107 108 0.698818 AGTTTGGCGGGGAGAAGATT 59.301 50.000 0.00 0.00 0.00 2.40
108 109 0.253327 GAGTTTGGCGGGGAGAAGAT 59.747 55.000 0.00 0.00 0.00 2.40
109 110 0.836400 AGAGTTTGGCGGGGAGAAGA 60.836 55.000 0.00 0.00 0.00 2.87
110 111 0.391793 GAGAGTTTGGCGGGGAGAAG 60.392 60.000 0.00 0.00 0.00 2.85
111 112 1.125093 TGAGAGTTTGGCGGGGAGAA 61.125 55.000 0.00 0.00 0.00 2.87
112 113 1.125093 TTGAGAGTTTGGCGGGGAGA 61.125 55.000 0.00 0.00 0.00 3.71
113 114 0.250727 TTTGAGAGTTTGGCGGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
114 115 0.183971 TTTTGAGAGTTTGGCGGGGA 59.816 50.000 0.00 0.00 0.00 4.81
115 116 0.598065 CTTTTGAGAGTTTGGCGGGG 59.402 55.000 0.00 0.00 0.00 5.73
116 117 1.604604 TCTTTTGAGAGTTTGGCGGG 58.395 50.000 0.00 0.00 0.00 6.13
117 118 4.396166 ACATATCTTTTGAGAGTTTGGCGG 59.604 41.667 0.00 0.00 0.00 6.13
118 119 5.106555 ACACATATCTTTTGAGAGTTTGGCG 60.107 40.000 0.00 0.00 0.00 5.69
119 120 6.259550 ACACATATCTTTTGAGAGTTTGGC 57.740 37.500 0.00 0.00 0.00 4.52
120 121 7.119699 TGCTACACATATCTTTTGAGAGTTTGG 59.880 37.037 0.00 0.00 0.00 3.28
121 122 8.032952 TGCTACACATATCTTTTGAGAGTTTG 57.967 34.615 0.00 0.00 0.00 2.93
122 123 8.097038 TCTGCTACACATATCTTTTGAGAGTTT 58.903 33.333 0.00 0.00 0.00 2.66
123 124 7.547370 GTCTGCTACACATATCTTTTGAGAGTT 59.453 37.037 0.00 0.00 0.00 3.01
124 125 7.038659 GTCTGCTACACATATCTTTTGAGAGT 58.961 38.462 0.00 0.00 0.00 3.24
125 126 7.038048 TGTCTGCTACACATATCTTTTGAGAG 58.962 38.462 0.00 0.00 31.43 3.20
126 127 6.935167 TGTCTGCTACACATATCTTTTGAGA 58.065 36.000 0.00 0.00 31.43 3.27
140 141 3.678056 AAAAGATCCGTGTCTGCTACA 57.322 42.857 0.00 0.00 35.06 2.74
141 142 3.060895 CGAAAAAGATCCGTGTCTGCTAC 59.939 47.826 0.00 0.00 0.00 3.58
142 143 3.250744 CGAAAAAGATCCGTGTCTGCTA 58.749 45.455 0.00 0.00 0.00 3.49
143 144 2.069273 CGAAAAAGATCCGTGTCTGCT 58.931 47.619 0.00 0.00 0.00 4.24
144 145 1.798813 ACGAAAAAGATCCGTGTCTGC 59.201 47.619 0.00 0.00 35.02 4.26
145 146 2.412089 GGACGAAAAAGATCCGTGTCTG 59.588 50.000 0.00 0.00 36.60 3.51
152 153 1.821216 TGCCTGGACGAAAAAGATCC 58.179 50.000 0.00 0.00 0.00 3.36
153 154 3.274288 AGATGCCTGGACGAAAAAGATC 58.726 45.455 0.00 0.00 0.00 2.75
161 162 0.465705 GATTGGAGATGCCTGGACGA 59.534 55.000 0.00 0.00 37.63 4.20
162 163 0.877649 CGATTGGAGATGCCTGGACG 60.878 60.000 0.00 0.00 37.63 4.79
164 165 1.146930 GCGATTGGAGATGCCTGGA 59.853 57.895 0.00 0.00 37.63 3.86
165 166 1.895707 GGCGATTGGAGATGCCTGG 60.896 63.158 0.00 0.00 44.16 4.45
166 167 3.741860 GGCGATTGGAGATGCCTG 58.258 61.111 0.00 0.00 44.16 4.85
198 199 3.305676 GCTTTCTTCCCTTTCTCCTTTGC 60.306 47.826 0.00 0.00 0.00 3.68
204 205 4.257731 CACTAGGCTTTCTTCCCTTTCTC 58.742 47.826 0.00 0.00 32.65 2.87
205 206 3.009584 CCACTAGGCTTTCTTCCCTTTCT 59.990 47.826 0.00 0.00 32.65 2.52
212 214 3.589495 ACGTACCACTAGGCTTTCTTC 57.411 47.619 0.00 0.00 39.06 2.87
214 216 3.960571 TCTACGTACCACTAGGCTTTCT 58.039 45.455 0.00 0.00 39.06 2.52
215 217 4.608951 CATCTACGTACCACTAGGCTTTC 58.391 47.826 0.00 0.00 39.06 2.62
225 227 1.731700 GCCTCGCATCTACGTACCA 59.268 57.895 0.00 0.00 0.00 3.25
226 228 1.370172 CGCCTCGCATCTACGTACC 60.370 63.158 0.00 0.00 0.00 3.34
227 229 0.384477 CTCGCCTCGCATCTACGTAC 60.384 60.000 0.00 0.00 0.00 3.67
229 231 2.716244 CTCGCCTCGCATCTACGT 59.284 61.111 0.00 0.00 0.00 3.57
230 232 2.727647 GCTCGCCTCGCATCTACG 60.728 66.667 0.00 0.00 0.00 3.51
231 233 2.355244 GGCTCGCCTCGCATCTAC 60.355 66.667 0.00 0.00 0.00 2.59
232 234 3.606662 GGGCTCGCCTCGCATCTA 61.607 66.667 8.00 0.00 36.10 1.98
273 286 3.034923 CTAGATCGCTGCTGCCGC 61.035 66.667 10.24 5.93 35.36 6.53
281 294 1.532794 CAGCCTCCCCTAGATCGCT 60.533 63.158 0.00 0.00 31.77 4.93
334 347 5.236263 CGACTCCTCCTGATCTATCATATCG 59.764 48.000 0.00 0.00 36.02 2.92
347 360 1.680651 ACTCTGCCGACTCCTCCTG 60.681 63.158 0.00 0.00 0.00 3.86
354 525 4.363990 CACGCCACTCTGCCGACT 62.364 66.667 0.00 0.00 0.00 4.18
367 538 1.154599 CGCACACACATTCTCACGC 60.155 57.895 0.00 0.00 0.00 5.34
384 555 1.267806 AGAAAGGCATGTGCTTGAACG 59.732 47.619 4.84 0.00 41.70 3.95
390 561 1.615392 GGACAAAGAAAGGCATGTGCT 59.385 47.619 4.84 0.00 41.70 4.40
424 599 1.153046 CCGTGAGTGTGGTTGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
525 701 2.376808 ACTCAACTCGCTCATTCAGG 57.623 50.000 0.00 0.00 0.00 3.86
535 711 8.244494 TCAAAGAGATAAATCAACTCAACTCG 57.756 34.615 0.00 0.00 33.69 4.18
550 729 4.290093 TCCCTAGCTGCTTCAAAGAGATA 58.710 43.478 7.79 0.00 0.00 1.98
551 730 3.110705 TCCCTAGCTGCTTCAAAGAGAT 58.889 45.455 7.79 0.00 0.00 2.75
552 731 2.499289 CTCCCTAGCTGCTTCAAAGAGA 59.501 50.000 7.79 0.00 0.00 3.10
553 732 2.499289 TCTCCCTAGCTGCTTCAAAGAG 59.501 50.000 7.79 7.88 0.00 2.85
554 733 2.499289 CTCTCCCTAGCTGCTTCAAAGA 59.501 50.000 7.79 5.95 0.00 2.52
555 734 2.419851 CCTCTCCCTAGCTGCTTCAAAG 60.420 54.545 7.79 0.00 0.00 2.77
594 775 3.782443 GGGCCCGTCCACCTACAG 61.782 72.222 5.69 0.00 36.21 2.74
657 838 0.881118 CGAGGAAAACATGGTGGTGG 59.119 55.000 0.00 0.00 0.00 4.61
658 839 0.881118 CCGAGGAAAACATGGTGGTG 59.119 55.000 0.00 0.00 0.00 4.17
659 840 0.893727 GCCGAGGAAAACATGGTGGT 60.894 55.000 0.00 0.00 0.00 4.16
692 878 3.808728 TGGAGAAAGGCATATACACTGC 58.191 45.455 0.00 0.00 38.93 4.40
693 879 5.471456 GGAATGGAGAAAGGCATATACACTG 59.529 44.000 0.00 0.00 0.00 3.66
694 880 5.456763 GGGAATGGAGAAAGGCATATACACT 60.457 44.000 0.00 0.00 0.00 3.55
695 881 4.762251 GGGAATGGAGAAAGGCATATACAC 59.238 45.833 0.00 0.00 0.00 2.90
696 882 4.202567 GGGGAATGGAGAAAGGCATATACA 60.203 45.833 0.00 0.00 0.00 2.29
697 883 4.043435 AGGGGAATGGAGAAAGGCATATAC 59.957 45.833 0.00 0.00 0.00 1.47
698 884 4.251169 AGGGGAATGGAGAAAGGCATATA 58.749 43.478 0.00 0.00 0.00 0.86
699 885 3.066704 AGGGGAATGGAGAAAGGCATAT 58.933 45.455 0.00 0.00 0.00 1.78
700 886 2.443255 GAGGGGAATGGAGAAAGGCATA 59.557 50.000 0.00 0.00 0.00 3.14
701 887 1.216427 GAGGGGAATGGAGAAAGGCAT 59.784 52.381 0.00 0.00 0.00 4.40
702 888 0.625849 GAGGGGAATGGAGAAAGGCA 59.374 55.000 0.00 0.00 0.00 4.75
703 889 0.106469 GGAGGGGAATGGAGAAAGGC 60.106 60.000 0.00 0.00 0.00 4.35
704 890 1.064389 GTGGAGGGGAATGGAGAAAGG 60.064 57.143 0.00 0.00 0.00 3.11
705 891 1.918957 AGTGGAGGGGAATGGAGAAAG 59.081 52.381 0.00 0.00 0.00 2.62
711 897 4.469227 CAGATAGATAGTGGAGGGGAATGG 59.531 50.000 0.00 0.00 0.00 3.16
717 903 3.513515 GGAAGCAGATAGATAGTGGAGGG 59.486 52.174 0.00 0.00 0.00 4.30
743 1238 1.558233 GGGGAAGAGGACGAAGAGAA 58.442 55.000 0.00 0.00 0.00 2.87
795 1295 7.986320 AGGATACGGCACTATACTATACTAGTG 59.014 40.741 5.39 5.55 43.96 2.74
811 1571 0.463654 GGCAATGACAGGATACGGCA 60.464 55.000 0.00 0.00 46.39 5.69
900 1662 2.038164 AGAGAGCACATCAAGAACAGCA 59.962 45.455 0.00 0.00 0.00 4.41
901 1663 2.697654 AGAGAGCACATCAAGAACAGC 58.302 47.619 0.00 0.00 0.00 4.40
935 1733 1.272536 TGACGCCTAGGTTCTCCTTCT 60.273 52.381 11.31 0.00 42.12 2.85
936 1734 1.183549 TGACGCCTAGGTTCTCCTTC 58.816 55.000 11.31 0.00 42.12 3.46
937 1735 1.757699 GATGACGCCTAGGTTCTCCTT 59.242 52.381 11.31 0.00 42.12 3.36
949 1747 0.879400 CTGGCTCTGATGATGACGCC 60.879 60.000 0.00 0.00 38.01 5.68
954 1752 3.204526 GAGGAAACTGGCTCTGATGATG 58.795 50.000 0.00 0.00 44.43 3.07
967 1765 2.820767 CGAAGCTCGGCGAGGAAACT 62.821 60.000 35.03 21.81 39.12 2.66
968 1766 2.445438 CGAAGCTCGGCGAGGAAAC 61.445 63.158 35.03 19.95 36.00 2.78
969 1767 2.126071 CGAAGCTCGGCGAGGAAA 60.126 61.111 35.03 1.49 36.00 3.13
985 1809 2.895865 CATGGCTGCTGAGCTCCG 60.896 66.667 12.15 5.92 45.44 4.63
991 1815 4.119363 GGGCTCCATGGCTGCTGA 62.119 66.667 22.63 0.00 41.48 4.26
1058 1889 5.479375 AGTTTCAGCATTGATTCATGTTCCT 59.521 36.000 0.00 0.00 32.27 3.36
1165 2006 1.365633 GTAGAGCGGGGAGATGCTG 59.634 63.158 0.00 0.00 42.60 4.41
1309 2150 3.744719 TTGTCGTCGGCTCGGAGG 61.745 66.667 7.20 0.00 0.00 4.30
1417 2567 1.388065 CGAGGCTGTAGGTGGAGAGG 61.388 65.000 0.00 0.00 0.00 3.69
1491 2641 3.706373 TCTTGAGGCTCCGGTGGC 61.706 66.667 21.40 21.40 0.00 5.01
1492 2642 2.266055 GTCTTGAGGCTCCGGTGG 59.734 66.667 12.86 0.00 0.00 4.61
1498 2648 3.378399 GAGGGCGGTCTTGAGGCTC 62.378 68.421 7.79 7.79 0.00 4.70
1587 2737 6.196724 CGAAAAAGGCTGAAGATACTACTACG 59.803 42.308 0.00 0.00 0.00 3.51
1588 2738 6.476053 CCGAAAAAGGCTGAAGATACTACTAC 59.524 42.308 0.00 0.00 0.00 2.73
1591 2741 5.176592 ACCGAAAAAGGCTGAAGATACTAC 58.823 41.667 0.00 0.00 33.69 2.73
1647 2802 8.049117 ACTGAAGAGCCAACTGAATGAATAATA 58.951 33.333 0.00 0.00 0.00 0.98
1648 2803 6.888632 ACTGAAGAGCCAACTGAATGAATAAT 59.111 34.615 0.00 0.00 0.00 1.28
1654 2809 3.817084 TGAACTGAAGAGCCAACTGAATG 59.183 43.478 0.00 0.00 0.00 2.67
1655 2810 4.070716 CTGAACTGAAGAGCCAACTGAAT 58.929 43.478 0.00 0.00 0.00 2.57
1779 2946 2.672961 TTGGAGTAGGCTCACATTCG 57.327 50.000 0.00 0.00 43.37 3.34
1792 2959 7.500141 ACAAATTTGCAGTTAAGAATTGGAGT 58.500 30.769 18.12 0.00 0.00 3.85
1794 2961 8.729805 AAACAAATTTGCAGTTAAGAATTGGA 57.270 26.923 18.12 0.00 0.00 3.53
1795 2962 9.786105 AAAAACAAATTTGCAGTTAAGAATTGG 57.214 25.926 18.12 0.00 0.00 3.16
1841 3009 3.256631 GGTCATTGGTTGCAGACAAATCT 59.743 43.478 8.87 0.00 37.58 2.40
1862 3030 5.661056 TGACCTATTGTTCAGTACTCTGG 57.339 43.478 0.00 0.00 41.59 3.86
1945 3116 3.907894 TTACCAGTTTTGCGAATCCAC 57.092 42.857 0.00 0.00 0.00 4.02
1952 3123 2.793278 AGGCTTTTACCAGTTTTGCG 57.207 45.000 0.00 0.00 0.00 4.85
2008 3179 3.055385 TGCCTCATTTTAACTAGCGGAGT 60.055 43.478 0.00 0.00 41.56 3.85
2012 3183 5.569059 CAGTTTTGCCTCATTTTAACTAGCG 59.431 40.000 0.00 0.00 0.00 4.26
2013 3184 5.863935 CCAGTTTTGCCTCATTTTAACTAGC 59.136 40.000 0.00 0.00 0.00 3.42
2021 3194 2.158325 TCCTCCCAGTTTTGCCTCATTT 60.158 45.455 0.00 0.00 0.00 2.32
2027 3200 2.039418 ACTTTTCCTCCCAGTTTTGCC 58.961 47.619 0.00 0.00 0.00 4.52
2037 3210 7.454260 AGACATTATTGACAACTTTTCCTCC 57.546 36.000 0.00 0.00 0.00 4.30
2053 3226 8.915036 CCAGGTAAGTGAAGTAGTAGACATTAT 58.085 37.037 0.00 0.00 0.00 1.28
2058 3231 4.142204 GGCCAGGTAAGTGAAGTAGTAGAC 60.142 50.000 0.00 0.00 0.00 2.59
2060 3233 3.132467 GGGCCAGGTAAGTGAAGTAGTAG 59.868 52.174 4.39 0.00 0.00 2.57
2061 3234 3.102204 GGGCCAGGTAAGTGAAGTAGTA 58.898 50.000 4.39 0.00 0.00 1.82
2062 3235 1.907255 GGGCCAGGTAAGTGAAGTAGT 59.093 52.381 4.39 0.00 0.00 2.73
2086 3260 1.148157 CGCGCTGATAACTGGGAGTG 61.148 60.000 5.56 0.00 0.00 3.51
2103 3277 3.082548 TGATATAGTCCTGCTAGACCGC 58.917 50.000 0.00 0.00 37.49 5.68
2104 3278 4.944317 TCATGATATAGTCCTGCTAGACCG 59.056 45.833 0.00 0.00 37.49 4.79
2105 3279 5.949354 AGTCATGATATAGTCCTGCTAGACC 59.051 44.000 0.00 0.00 37.49 3.85
2131 3305 8.344831 CAGTTTGTGACAGAAATTCAGACATAA 58.655 33.333 0.59 0.00 0.00 1.90
2147 3321 1.334869 CCAGGCAGTTCAGTTTGTGAC 59.665 52.381 0.00 0.00 33.71 3.67
2155 3329 0.689623 AACCTCTCCAGGCAGTTCAG 59.310 55.000 0.00 0.00 45.05 3.02
2160 3334 0.035630 CAGGAAACCTCTCCAGGCAG 60.036 60.000 0.00 0.00 45.05 4.85
2161 3335 0.473694 TCAGGAAACCTCTCCAGGCA 60.474 55.000 0.00 0.00 45.05 4.75
2162 3336 0.693049 TTCAGGAAACCTCTCCAGGC 59.307 55.000 0.00 0.00 45.05 4.85
2163 3337 2.639839 TCTTTCAGGAAACCTCTCCAGG 59.360 50.000 0.00 0.00 46.87 4.45
2164 3338 4.357918 TTCTTTCAGGAAACCTCTCCAG 57.642 45.455 0.00 0.00 38.02 3.86
2165 3339 4.166144 ACTTTCTTTCAGGAAACCTCTCCA 59.834 41.667 0.00 0.00 38.02 3.86
2166 3340 4.720046 ACTTTCTTTCAGGAAACCTCTCC 58.280 43.478 0.00 0.00 35.51 3.71
2167 3341 7.118535 GTCATACTTTCTTTCAGGAAACCTCTC 59.881 40.741 0.00 0.00 32.63 3.20
2168 3342 6.937465 GTCATACTTTCTTTCAGGAAACCTCT 59.063 38.462 0.00 0.00 32.63 3.69
2169 3343 6.149640 GGTCATACTTTCTTTCAGGAAACCTC 59.850 42.308 0.00 0.00 32.63 3.85
2170 3344 6.004574 GGTCATACTTTCTTTCAGGAAACCT 58.995 40.000 0.00 0.00 32.63 3.50
2171 3345 5.106673 CGGTCATACTTTCTTTCAGGAAACC 60.107 44.000 0.00 0.00 32.63 3.27
2172 3346 5.699458 TCGGTCATACTTTCTTTCAGGAAAC 59.301 40.000 0.00 0.00 32.63 2.78
2173 3347 5.860611 TCGGTCATACTTTCTTTCAGGAAA 58.139 37.500 0.00 0.00 34.55 3.13
2174 3348 5.477607 TCGGTCATACTTTCTTTCAGGAA 57.522 39.130 0.00 0.00 0.00 3.36
2175 3349 5.011738 AGTTCGGTCATACTTTCTTTCAGGA 59.988 40.000 0.00 0.00 0.00 3.86
2176 3350 5.120830 CAGTTCGGTCATACTTTCTTTCAGG 59.879 44.000 0.00 0.00 0.00 3.86
2206 3380 7.376866 ACTGAAATTCAAAAGCATATAATCGCG 59.623 33.333 0.00 0.00 0.00 5.87
2226 3400 6.945435 TGGCTGTAATATTCCTGAAACTGAAA 59.055 34.615 0.00 0.00 0.00 2.69
2238 3412 4.981806 TTTGGCTGTGGCTGTAATATTC 57.018 40.909 0.00 0.00 38.73 1.75
2245 3419 0.675633 GTGATTTTGGCTGTGGCTGT 59.324 50.000 0.00 0.00 38.73 4.40
2249 3423 6.222389 TGAAATTTAGTGATTTTGGCTGTGG 58.778 36.000 0.00 0.00 29.75 4.17
2266 3441 4.202202 TGTCCGGCATGAAAACTGAAATTT 60.202 37.500 0.00 0.00 0.00 1.82
2295 3505 9.740239 ATTGGATTTAATCGAATTCAAGTGATG 57.260 29.630 8.95 0.00 37.78 3.07
2346 3558 5.232838 GGCAGTTCACACAAATTCAAAAGAG 59.767 40.000 0.00 0.00 0.00 2.85
2349 3561 5.083533 AGGCAGTTCACACAAATTCAAAA 57.916 34.783 0.00 0.00 0.00 2.44
2368 3580 5.105877 GGGTTCTGGTCAAACTATTTTAGGC 60.106 44.000 0.00 0.00 0.00 3.93
2371 3583 8.485578 AATTGGGTTCTGGTCAAACTATTTTA 57.514 30.769 0.00 0.00 0.00 1.52
2372 3584 6.994421 ATTGGGTTCTGGTCAAACTATTTT 57.006 33.333 0.00 0.00 0.00 1.82
2378 3598 6.754193 TGAAATAATTGGGTTCTGGTCAAAC 58.246 36.000 0.00 0.00 0.00 2.93
2408 3628 8.560355 TTTCAGAAATTCGGATCATTTCAGTA 57.440 30.769 15.52 3.49 41.35 2.74
2419 3639 8.763356 CATTCAACAAAATTTCAGAAATTCGGA 58.237 29.630 19.41 10.91 40.05 4.55
2421 3641 9.360514 CACATTCAACAAAATTTCAGAAATTCG 57.639 29.630 19.41 15.82 40.05 3.34
2427 3647 8.663911 GGTTTTCACATTCAACAAAATTTCAGA 58.336 29.630 0.00 0.00 0.00 3.27
2428 3648 8.449397 TGGTTTTCACATTCAACAAAATTTCAG 58.551 29.630 0.00 0.00 0.00 3.02
2429 3649 8.327941 TGGTTTTCACATTCAACAAAATTTCA 57.672 26.923 0.00 0.00 0.00 2.69
2430 3650 9.786105 AATGGTTTTCACATTCAACAAAATTTC 57.214 25.926 0.00 0.00 33.51 2.17
2435 3655 9.442047 AGTTTAATGGTTTTCACATTCAACAAA 57.558 25.926 14.05 0.97 41.43 2.83
2437 3657 9.743057 CTAGTTTAATGGTTTTCACATTCAACA 57.257 29.630 14.05 4.08 41.43 3.33
2438 3658 9.744468 ACTAGTTTAATGGTTTTCACATTCAAC 57.256 29.630 0.00 0.00 40.27 3.18
2444 3664 8.962679 ACAGAAACTAGTTTAATGGTTTTCACA 58.037 29.630 25.45 0.00 34.45 3.58
2458 3716 6.541278 GGTAAAACAGGTGACAGAAACTAGTT 59.459 38.462 1.12 1.12 0.00 2.24
2482 3860 7.965107 GCAGAACAAGTGAATAAAGTATCAAGG 59.035 37.037 0.00 0.00 0.00 3.61
2483 3861 7.965107 GGCAGAACAAGTGAATAAAGTATCAAG 59.035 37.037 0.00 0.00 0.00 3.02
2484 3862 7.446931 TGGCAGAACAAGTGAATAAAGTATCAA 59.553 33.333 0.00 0.00 0.00 2.57
2485 3863 6.939730 TGGCAGAACAAGTGAATAAAGTATCA 59.060 34.615 0.00 0.00 0.00 2.15
2486 3864 7.377766 TGGCAGAACAAGTGAATAAAGTATC 57.622 36.000 0.00 0.00 0.00 2.24
2487 3865 7.629222 GCATGGCAGAACAAGTGAATAAAGTAT 60.629 37.037 0.00 0.00 0.00 2.12
2488 3866 6.349280 GCATGGCAGAACAAGTGAATAAAGTA 60.349 38.462 0.00 0.00 0.00 2.24
2489 3867 5.565439 GCATGGCAGAACAAGTGAATAAAGT 60.565 40.000 0.00 0.00 0.00 2.66
2490 3868 4.860907 GCATGGCAGAACAAGTGAATAAAG 59.139 41.667 0.00 0.00 0.00 1.85
2491 3869 4.523943 AGCATGGCAGAACAAGTGAATAAA 59.476 37.500 0.00 0.00 0.00 1.40
2492 3870 4.081406 AGCATGGCAGAACAAGTGAATAA 58.919 39.130 0.00 0.00 0.00 1.40
2493 3871 3.689347 AGCATGGCAGAACAAGTGAATA 58.311 40.909 0.00 0.00 0.00 1.75
2494 3872 2.490903 GAGCATGGCAGAACAAGTGAAT 59.509 45.455 0.00 0.00 0.00 2.57
2521 3899 4.443394 GCATGAAAGCAACAACAAGAAGAG 59.557 41.667 0.00 0.00 0.00 2.85
2876 4262 3.072330 TGTCAGGCAGTTCACTTATGGAA 59.928 43.478 0.00 0.00 0.00 3.53
2881 4267 3.769739 ACATGTCAGGCAGTTCACTTA 57.230 42.857 0.00 0.00 0.00 2.24
2883 4269 2.620115 CAAACATGTCAGGCAGTTCACT 59.380 45.455 0.00 0.00 0.00 3.41
2886 4272 1.610522 AGCAAACATGTCAGGCAGTTC 59.389 47.619 15.80 0.00 0.00 3.01
2890 4276 0.178995 TGGAGCAAACATGTCAGGCA 60.179 50.000 15.80 0.00 0.00 4.75
2892 4278 2.165030 GGAATGGAGCAAACATGTCAGG 59.835 50.000 0.00 0.00 0.00 3.86
2935 4322 0.915364 AGGAGAAGTGGCCAAGATCC 59.085 55.000 7.24 13.32 0.00 3.36
2975 4362 5.368256 ACTAGTTGCTTGCTGAAATCAAG 57.632 39.130 0.00 0.00 42.72 3.02
2976 4363 5.299028 TGAACTAGTTGCTTGCTGAAATCAA 59.701 36.000 14.14 0.00 0.00 2.57
2977 4364 4.821260 TGAACTAGTTGCTTGCTGAAATCA 59.179 37.500 14.14 0.00 0.00 2.57
2978 4365 5.049129 ACTGAACTAGTTGCTTGCTGAAATC 60.049 40.000 14.14 0.00 35.67 2.17
2980 4367 4.199310 ACTGAACTAGTTGCTTGCTGAAA 58.801 39.130 14.14 0.00 35.67 2.69
2981 4368 3.808728 ACTGAACTAGTTGCTTGCTGAA 58.191 40.909 14.14 0.00 35.67 3.02
3004 4393 7.970061 TGATGAGTTGAGCAAAAATAACATAGC 59.030 33.333 0.00 0.00 0.00 2.97
3010 4399 6.809689 CAGCATGATGAGTTGAGCAAAAATAA 59.190 34.615 4.56 0.00 39.69 1.40
3019 4409 3.119602 CCCAAACAGCATGATGAGTTGAG 60.120 47.826 24.02 13.51 39.69 3.02
3047 4437 2.262423 AAACCAGGAGCAGAGTCAAC 57.738 50.000 0.00 0.00 0.00 3.18
3155 4546 4.365514 TCCAATTTGGTAGCTTGAGTCA 57.634 40.909 14.98 0.00 39.03 3.41
3217 4608 4.462483 AGACAAAGTTTTGCCTCTGTTTCA 59.538 37.500 4.58 0.00 41.79 2.69
3256 4647 8.595362 ATTAATCGGGGAATTCTCTTCTTTTT 57.405 30.769 5.06 0.00 0.00 1.94
3292 4683 2.044758 AGTAGGTCGGTTTTCACCTGT 58.955 47.619 1.65 0.00 43.30 4.00
3297 4688 2.922740 AAGCAGTAGGTCGGTTTTCA 57.077 45.000 0.00 0.00 0.00 2.69
3362 4753 0.528924 TGGTCAATGCAGAGCAATGC 59.471 50.000 5.46 0.00 43.62 3.56
3368 4788 6.860080 ACTGAATAAAATGGTCAATGCAGAG 58.140 36.000 0.00 0.00 0.00 3.35
3377 4797 7.119846 AGTGTCTGCTTACTGAATAAAATGGTC 59.880 37.037 0.00 0.00 0.00 4.02
3395 4815 2.833794 TGGTGTTCAGTTAGTGTCTGC 58.166 47.619 0.00 0.00 33.48 4.26
3406 4826 9.421806 TCTGCATAAATAAATTTTGGTGTTCAG 57.578 29.630 0.00 0.00 0.00 3.02
3493 4914 0.254178 AGAAGGTGCCGCTGATGATT 59.746 50.000 0.00 0.00 0.00 2.57
3559 4980 2.738521 GCCGATGTGTGCACGACT 60.739 61.111 13.13 0.00 0.00 4.18
3787 5208 0.173481 CGATGGAGCCGAAGAAGACA 59.827 55.000 0.00 0.00 0.00 3.41
4060 5481 2.665185 AGGTTGGTGACGAAGCGC 60.665 61.111 0.00 0.00 0.00 5.92
4327 5748 3.035576 CTCACGCTCGTAGTCGGCA 62.036 63.158 0.00 0.00 37.69 5.69
4342 5763 0.684535 TGACCGTGAAGGCATTCTCA 59.315 50.000 12.92 4.71 46.52 3.27
4348 5769 2.264480 CCGATGACCGTGAAGGCA 59.736 61.111 0.00 0.00 46.52 4.75
4357 5778 3.134127 GGGTTGCTGCCGATGACC 61.134 66.667 0.00 0.00 0.00 4.02
4417 5838 1.653115 GCGTATCTCCACGGACGAT 59.347 57.895 0.00 2.31 42.18 3.73
4441 5862 3.052082 CTGCTGCCCGTTGGACTG 61.052 66.667 0.00 0.00 0.00 3.51
4458 5879 1.927895 CTCTATGGTGTTCGTCCTGC 58.072 55.000 0.00 0.00 0.00 4.85
4460 5881 1.751924 GAGCTCTATGGTGTTCGTCCT 59.248 52.381 6.43 0.00 0.00 3.85
4501 5928 1.222567 ACCTCACCCTTTTCACCACT 58.777 50.000 0.00 0.00 0.00 4.00
4510 5937 1.427072 CCACCAGGAACCTCACCCTT 61.427 60.000 0.00 0.00 36.89 3.95
4548 5975 3.805267 GCATCTGCTTGTCCTCCG 58.195 61.111 0.00 0.00 38.21 4.63
4624 6051 3.050275 GCCTTCACGTGGGAGTGC 61.050 66.667 17.00 14.43 41.61 4.40
4681 6108 3.307480 GGCGCAGGAAGTTATACCCATAT 60.307 47.826 10.83 0.00 0.00 1.78
4684 6111 0.179468 GGCGCAGGAAGTTATACCCA 59.821 55.000 10.83 0.00 0.00 4.51
4687 6114 0.103572 TCCGGCGCAGGAAGTTATAC 59.896 55.000 27.57 0.00 37.36 1.47
4690 6117 3.061752 TTCCGGCGCAGGAAGTTA 58.938 55.556 33.88 15.89 44.66 2.24
4715 6142 4.057428 GAGCACGACGTCTGGGCT 62.057 66.667 28.54 28.54 37.56 5.19
4857 6284 7.939782 TCAAAACATATATTTCCATCACGCAT 58.060 30.769 0.00 0.00 0.00 4.73
4875 6302 9.666626 GATTTTTGCATTTCATCAATCAAAACA 57.333 25.926 0.00 0.00 34.78 2.83
4876 6303 8.833264 CGATTTTTGCATTTCATCAATCAAAAC 58.167 29.630 0.00 0.00 34.78 2.43
4877 6304 8.557864 ACGATTTTTGCATTTCATCAATCAAAA 58.442 25.926 0.00 0.00 34.06 2.44
4881 6308 7.790673 GCATACGATTTTTGCATTTCATCAATC 59.209 33.333 0.00 0.00 36.40 2.67
4882 6309 7.515528 CGCATACGATTTTTGCATTTCATCAAT 60.516 33.333 0.00 0.00 43.93 2.57
4915 6345 6.338937 GGTCGATCTTTTTACACTATCACCT 58.661 40.000 0.00 0.00 0.00 4.00
4947 6377 3.083349 TCCATCCTCCGCCACTGG 61.083 66.667 0.00 0.00 0.00 4.00
4948 6378 2.184020 TTGTCCATCCTCCGCCACTG 62.184 60.000 0.00 0.00 0.00 3.66
4949 6379 1.488705 TTTGTCCATCCTCCGCCACT 61.489 55.000 0.00 0.00 0.00 4.00
4950 6380 0.608035 TTTTGTCCATCCTCCGCCAC 60.608 55.000 0.00 0.00 0.00 5.01
4951 6381 0.322456 CTTTTGTCCATCCTCCGCCA 60.322 55.000 0.00 0.00 0.00 5.69
4952 6382 0.322546 ACTTTTGTCCATCCTCCGCC 60.323 55.000 0.00 0.00 0.00 6.13
4953 6383 1.200020 CAACTTTTGTCCATCCTCCGC 59.800 52.381 0.00 0.00 0.00 5.54
4954 6384 2.744202 CTCAACTTTTGTCCATCCTCCG 59.256 50.000 0.00 0.00 0.00 4.63
4955 6385 3.084786 CCTCAACTTTTGTCCATCCTCC 58.915 50.000 0.00 0.00 0.00 4.30
4956 6386 3.756117 ACCTCAACTTTTGTCCATCCTC 58.244 45.455 0.00 0.00 0.00 3.71
4957 6387 3.884037 ACCTCAACTTTTGTCCATCCT 57.116 42.857 0.00 0.00 0.00 3.24
4958 6388 4.010349 CCTACCTCAACTTTTGTCCATCC 58.990 47.826 0.00 0.00 0.00 3.51
4959 6389 4.010349 CCCTACCTCAACTTTTGTCCATC 58.990 47.826 0.00 0.00 0.00 3.51
4960 6390 3.814316 GCCCTACCTCAACTTTTGTCCAT 60.814 47.826 0.00 0.00 0.00 3.41
4961 6391 2.488347 GCCCTACCTCAACTTTTGTCCA 60.488 50.000 0.00 0.00 0.00 4.02
4962 6392 2.160205 GCCCTACCTCAACTTTTGTCC 58.840 52.381 0.00 0.00 0.00 4.02
4963 6393 3.141767 AGCCCTACCTCAACTTTTGTC 57.858 47.619 0.00 0.00 0.00 3.18
4964 6394 4.104261 AGTTAGCCCTACCTCAACTTTTGT 59.896 41.667 0.00 0.00 0.00 2.83
4965 6395 4.652822 AGTTAGCCCTACCTCAACTTTTG 58.347 43.478 0.00 0.00 0.00 2.44
4966 6396 4.995624 AGTTAGCCCTACCTCAACTTTT 57.004 40.909 0.00 0.00 0.00 2.27
4967 6397 4.995624 AAGTTAGCCCTACCTCAACTTT 57.004 40.909 0.00 0.00 36.33 2.66
4968 6398 4.506802 CCAAAGTTAGCCCTACCTCAACTT 60.507 45.833 0.00 0.00 40.25 2.66
4969 6399 3.009143 CCAAAGTTAGCCCTACCTCAACT 59.991 47.826 0.00 0.00 0.00 3.16
4970 6400 3.244805 ACCAAAGTTAGCCCTACCTCAAC 60.245 47.826 0.00 0.00 0.00 3.18
4971 6401 2.983898 ACCAAAGTTAGCCCTACCTCAA 59.016 45.455 0.00 0.00 0.00 3.02
4972 6402 2.627933 ACCAAAGTTAGCCCTACCTCA 58.372 47.619 0.00 0.00 0.00 3.86
4973 6403 3.715638 AACCAAAGTTAGCCCTACCTC 57.284 47.619 0.00 0.00 33.27 3.85
4974 6404 4.019591 CAGTAACCAAAGTTAGCCCTACCT 60.020 45.833 0.00 0.00 39.13 3.08
4975 6405 4.259356 CAGTAACCAAAGTTAGCCCTACC 58.741 47.826 0.00 0.00 39.13 3.18
4976 6406 4.259356 CCAGTAACCAAAGTTAGCCCTAC 58.741 47.826 0.00 0.00 39.13 3.18
4977 6407 3.307904 GCCAGTAACCAAAGTTAGCCCTA 60.308 47.826 0.00 0.00 39.13 3.53
4978 6408 2.554564 GCCAGTAACCAAAGTTAGCCCT 60.555 50.000 0.00 0.00 39.13 5.19
4979 6409 1.816835 GCCAGTAACCAAAGTTAGCCC 59.183 52.381 0.00 0.00 39.13 5.19
4980 6410 1.816835 GGCCAGTAACCAAAGTTAGCC 59.183 52.381 0.00 0.00 39.13 3.93
4981 6411 2.228103 GTGGCCAGTAACCAAAGTTAGC 59.772 50.000 5.11 0.00 39.13 3.09
4982 6412 2.817844 GGTGGCCAGTAACCAAAGTTAG 59.182 50.000 5.11 0.00 39.13 2.34
4983 6413 2.811136 CGGTGGCCAGTAACCAAAGTTA 60.811 50.000 5.11 0.00 39.39 2.24
4984 6414 1.699730 GGTGGCCAGTAACCAAAGTT 58.300 50.000 5.11 0.00 39.39 2.66
4985 6415 0.536460 CGGTGGCCAGTAACCAAAGT 60.536 55.000 5.11 0.00 39.39 2.66
4986 6416 1.862602 GCGGTGGCCAGTAACCAAAG 61.863 60.000 5.11 0.00 39.39 2.77
4987 6417 1.899534 GCGGTGGCCAGTAACCAAA 60.900 57.895 5.11 0.00 39.39 3.28
4988 6418 2.281900 GCGGTGGCCAGTAACCAA 60.282 61.111 5.11 0.00 39.39 3.67
5008 6438 3.613702 GACGTATCGGCGCAACGG 61.614 66.667 28.17 15.72 40.81 4.44
5018 6448 0.596859 GTAGGGCAAGGCGACGTATC 60.597 60.000 0.00 0.00 0.00 2.24
5019 6449 1.440476 GTAGGGCAAGGCGACGTAT 59.560 57.895 0.00 0.00 0.00 3.06
5020 6450 2.713967 GGTAGGGCAAGGCGACGTA 61.714 63.158 0.00 0.00 0.00 3.57
5021 6451 4.078516 GGTAGGGCAAGGCGACGT 62.079 66.667 0.00 0.00 0.00 4.34
5022 6452 3.771160 AGGTAGGGCAAGGCGACG 61.771 66.667 0.00 0.00 0.00 5.12
5023 6453 2.125106 CAGGTAGGGCAAGGCGAC 60.125 66.667 0.00 0.00 0.00 5.19
5024 6454 3.399181 CCAGGTAGGGCAAGGCGA 61.399 66.667 0.00 0.00 0.00 5.54
5025 6455 3.717294 ACCAGGTAGGGCAAGGCG 61.717 66.667 0.00 0.00 43.89 5.52
5114 6544 1.680735 CAACACTAGCCTTGTTGCCAA 59.319 47.619 10.66 0.00 45.36 4.52
5115 6545 1.317613 CAACACTAGCCTTGTTGCCA 58.682 50.000 10.66 0.00 45.36 4.92
5135 6565 2.268920 GTTGCAGAGGGCCGATCA 59.731 61.111 9.09 0.00 43.89 2.92
5137 6567 2.270205 CTGTTGCAGAGGGCCGAT 59.730 61.111 0.00 0.00 43.89 4.18
5159 6593 5.798125 TGGTTCAAGGATATTGCAACAAA 57.202 34.783 0.00 0.00 0.00 2.83
5190 6624 2.634940 CAGAGACCTTGTTCCAGAAGGA 59.365 50.000 6.68 0.00 42.44 3.36
5198 6632 2.545946 GACTGCAACAGAGACCTTGTTC 59.454 50.000 0.78 0.00 35.18 3.18
5206 6640 3.446310 TTGTTACGACTGCAACAGAGA 57.554 42.857 0.78 0.00 36.13 3.10
5246 6686 1.550524 TCACTGCACCTCTGTATGGAC 59.449 52.381 0.00 0.00 0.00 4.02
5422 6862 6.407202 ACCAATGATTTAGTACCAGTCTGTC 58.593 40.000 0.00 0.00 0.00 3.51
5433 6873 2.446435 AGCGGCAACCAATGATTTAGT 58.554 42.857 1.45 0.00 0.00 2.24
5445 6885 8.808529 CATATTATAATAGTGAGTAGCGGCAAC 58.191 37.037 10.79 0.00 0.00 4.17
5478 6918 6.737254 ACATTGGGTTCGATTGTACTTTAG 57.263 37.500 0.00 0.00 0.00 1.85
5506 6946 3.982058 CGTGAGAGGTAAAGTGAGACAAC 59.018 47.826 0.00 0.00 0.00 3.32
5544 6984 4.724798 ACTTAGCCCTAAATACCATGTGGA 59.275 41.667 5.96 0.00 38.94 4.02
5554 6994 4.947388 TGCATCGAAAACTTAGCCCTAAAT 59.053 37.500 0.00 0.00 0.00 1.40
5660 7100 9.211485 CAAATGGTTTAAGATGCTCTTGATTTT 57.789 29.630 8.21 0.00 37.29 1.82
5707 7149 6.938596 CCATTGAATCCAACATAGAGATGCTA 59.061 38.462 0.00 0.00 36.43 3.49
5719 7161 7.383029 CACATGTATATTGCCATTGAATCCAAC 59.617 37.037 0.00 0.00 34.72 3.77
5741 7183 5.070180 CCTCTACTCCATCTTCACATCACAT 59.930 44.000 0.00 0.00 0.00 3.21
5754 7196 3.969976 ACATGTATGTGCCTCTACTCCAT 59.030 43.478 0.00 0.00 40.03 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.