Multiple sequence alignment - TraesCS2D01G105200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G105200 chr2D 100.000 2550 0 0 1 2550 56587899 56590448 0.000000e+00 4710.0
1 TraesCS2D01G105200 chr2D 97.566 1027 22 3 1524 2549 160362075 160363099 0.000000e+00 1755.0
2 TraesCS2D01G105200 chr2D 97.374 1028 26 1 1523 2549 605742557 605743584 0.000000e+00 1748.0
3 TraesCS2D01G105200 chr2D 97.195 1034 26 3 1518 2549 114365739 114366771 0.000000e+00 1746.0
4 TraesCS2D01G105200 chr2D 94.830 851 39 5 675 1523 236135102 236135949 0.000000e+00 1323.0
5 TraesCS2D01G105200 chr2D 94.090 863 38 9 675 1530 644015241 644014385 0.000000e+00 1299.0
6 TraesCS2D01G105200 chr2D 100.000 42 0 0 644 685 236135103 236135144 7.560000e-11 78.7
7 TraesCS2D01G105200 chr2D 100.000 41 0 0 645 685 627749595 627749555 2.720000e-10 76.8
8 TraesCS2D01G105200 chr5D 97.760 1027 22 1 1524 2549 531353822 531352796 0.000000e+00 1768.0
9 TraesCS2D01G105200 chr5D 97.466 1026 25 1 1524 2549 505299325 505298301 0.000000e+00 1749.0
10 TraesCS2D01G105200 chr5D 93.831 308 19 0 340 647 179972956 179972649 4.970000e-127 464.0
11 TraesCS2D01G105200 chr5D 91.743 327 24 3 341 664 373804922 373804596 3.870000e-123 451.0
12 TraesCS2D01G105200 chr5D 100.000 41 0 0 645 685 179972685 179972645 2.720000e-10 76.8
13 TraesCS2D01G105200 chr3D 97.663 1027 23 1 1524 2549 474708783 474709809 0.000000e+00 1762.0
14 TraesCS2D01G105200 chr3D 94.235 850 42 7 677 1523 267288824 267289669 0.000000e+00 1291.0
15 TraesCS2D01G105200 chr3D 93.757 865 46 6 667 1530 553937093 553936236 0.000000e+00 1291.0
16 TraesCS2D01G105200 chr4D 97.374 1028 26 1 1523 2549 43735785 43736812 0.000000e+00 1748.0
17 TraesCS2D01G105200 chr4D 94.028 854 47 4 678 1530 84467455 84466605 0.000000e+00 1291.0
18 TraesCS2D01G105200 chr4D 94.175 309 17 1 339 646 419345999 419346307 1.070000e-128 470.0
19 TraesCS2D01G105200 chr7D 97.371 1027 26 1 1524 2549 311397060 311398086 0.000000e+00 1746.0
20 TraesCS2D01G105200 chr7D 96.827 1040 30 3 1510 2549 599205047 599206083 0.000000e+00 1735.0
21 TraesCS2D01G105200 chr7D 100.000 42 0 0 644 685 583094529 583094570 7.560000e-11 78.7
22 TraesCS2D01G105200 chr7D 100.000 41 0 0 645 685 207198039 207198079 2.720000e-10 76.8
23 TraesCS2D01G105200 chr1D 94.872 858 35 5 667 1523 250223629 250224478 0.000000e+00 1332.0
24 TraesCS2D01G105200 chr1D 93.764 866 47 6 667 1530 416659162 416658302 0.000000e+00 1293.0
25 TraesCS2D01G105200 chr1D 92.359 602 44 2 730 1331 11156807 11156208 0.000000e+00 856.0
26 TraesCS2D01G105200 chr1D 94.481 308 16 1 340 646 424634905 424635212 8.260000e-130 473.0
27 TraesCS2D01G105200 chr1D 93.548 310 16 4 339 646 441745116 441744809 2.310000e-125 459.0
28 TraesCS2D01G105200 chr1D 93.016 315 18 4 341 653 416659424 416659112 8.320000e-125 457.0
29 TraesCS2D01G105200 chr6D 94.159 856 42 6 676 1530 449137790 449136942 0.000000e+00 1297.0
30 TraesCS2D01G105200 chr6D 93.891 311 19 0 336 646 8096865 8097175 1.070000e-128 470.0
31 TraesCS2D01G105200 chr7B 93.326 869 50 6 667 1531 94574300 94573436 0.000000e+00 1277.0
32 TraesCS2D01G105200 chr5A 93.851 309 18 1 339 647 417293502 417293195 4.970000e-127 464.0
33 TraesCS2D01G105200 chr7A 92.994 314 20 2 341 653 450286159 450285847 8.320000e-125 457.0
34 TraesCS2D01G105200 chr6B 86.161 224 31 0 340 563 635913091 635913314 2.530000e-60 243.0
35 TraesCS2D01G105200 chrUn 100.000 42 0 0 644 685 108803182 108803223 7.560000e-11 78.7
36 TraesCS2D01G105200 chr1B 100.000 41 0 0 645 685 498668404 498668364 2.720000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G105200 chr2D 56587899 56590448 2549 False 4710.00 4710 100.000 1 2550 1 chr2D.!!$F1 2549
1 TraesCS2D01G105200 chr2D 160362075 160363099 1024 False 1755.00 1755 97.566 1524 2549 1 chr2D.!!$F3 1025
2 TraesCS2D01G105200 chr2D 605742557 605743584 1027 False 1748.00 1748 97.374 1523 2549 1 chr2D.!!$F4 1026
3 TraesCS2D01G105200 chr2D 114365739 114366771 1032 False 1746.00 1746 97.195 1518 2549 1 chr2D.!!$F2 1031
4 TraesCS2D01G105200 chr2D 644014385 644015241 856 True 1299.00 1299 94.090 675 1530 1 chr2D.!!$R2 855
5 TraesCS2D01G105200 chr2D 236135102 236135949 847 False 700.85 1323 97.415 644 1523 2 chr2D.!!$F5 879
6 TraesCS2D01G105200 chr5D 531352796 531353822 1026 True 1768.00 1768 97.760 1524 2549 1 chr5D.!!$R3 1025
7 TraesCS2D01G105200 chr5D 505298301 505299325 1024 True 1749.00 1749 97.466 1524 2549 1 chr5D.!!$R2 1025
8 TraesCS2D01G105200 chr3D 474708783 474709809 1026 False 1762.00 1762 97.663 1524 2549 1 chr3D.!!$F2 1025
9 TraesCS2D01G105200 chr3D 267288824 267289669 845 False 1291.00 1291 94.235 677 1523 1 chr3D.!!$F1 846
10 TraesCS2D01G105200 chr3D 553936236 553937093 857 True 1291.00 1291 93.757 667 1530 1 chr3D.!!$R1 863
11 TraesCS2D01G105200 chr4D 43735785 43736812 1027 False 1748.00 1748 97.374 1523 2549 1 chr4D.!!$F1 1026
12 TraesCS2D01G105200 chr4D 84466605 84467455 850 True 1291.00 1291 94.028 678 1530 1 chr4D.!!$R1 852
13 TraesCS2D01G105200 chr7D 311397060 311398086 1026 False 1746.00 1746 97.371 1524 2549 1 chr7D.!!$F2 1025
14 TraesCS2D01G105200 chr7D 599205047 599206083 1036 False 1735.00 1735 96.827 1510 2549 1 chr7D.!!$F4 1039
15 TraesCS2D01G105200 chr1D 250223629 250224478 849 False 1332.00 1332 94.872 667 1523 1 chr1D.!!$F1 856
16 TraesCS2D01G105200 chr1D 416658302 416659424 1122 True 875.00 1293 93.390 341 1530 2 chr1D.!!$R3 1189
17 TraesCS2D01G105200 chr1D 11156208 11156807 599 True 856.00 856 92.359 730 1331 1 chr1D.!!$R1 601
18 TraesCS2D01G105200 chr6D 449136942 449137790 848 True 1297.00 1297 94.159 676 1530 1 chr6D.!!$R1 854
19 TraesCS2D01G105200 chr7B 94573436 94574300 864 True 1277.00 1277 93.326 667 1531 1 chr7B.!!$R1 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.027455 CGAGCAACGAACAAAGCACA 59.973 50.0 0.0 0.0 45.77 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2000 0.041224 CGAAGGAATCGCTCGATCGA 60.041 55.0 18.32 18.32 45.89 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.691049 TTATACACGGGCTGTACGTAC 57.309 47.619 18.90 18.90 43.58 3.67
21 22 1.755179 ATACACGGGCTGTACGTACT 58.245 50.000 25.12 6.20 43.58 2.73
22 23 1.533625 TACACGGGCTGTACGTACTT 58.466 50.000 25.12 1.64 43.58 2.24
23 24 0.675633 ACACGGGCTGTACGTACTTT 59.324 50.000 25.12 1.97 43.58 2.66
24 25 1.336240 ACACGGGCTGTACGTACTTTC 60.336 52.381 25.12 13.90 43.58 2.62
25 26 0.244721 ACGGGCTGTACGTACTTTCC 59.755 55.000 25.12 20.64 43.60 3.13
26 27 0.799534 CGGGCTGTACGTACTTTCCG 60.800 60.000 26.29 26.29 0.00 4.30
27 28 0.527565 GGGCTGTACGTACTTTCCGA 59.472 55.000 25.12 4.24 0.00 4.55
28 29 1.135721 GGGCTGTACGTACTTTCCGAT 59.864 52.381 25.12 0.00 0.00 4.18
29 30 2.457970 GGCTGTACGTACTTTCCGATC 58.542 52.381 25.12 0.91 0.00 3.69
30 31 2.159338 GGCTGTACGTACTTTCCGATCA 60.159 50.000 25.12 2.15 0.00 2.92
31 32 2.850647 GCTGTACGTACTTTCCGATCAC 59.149 50.000 25.12 0.00 0.00 3.06
32 33 3.671433 GCTGTACGTACTTTCCGATCACA 60.671 47.826 25.12 3.34 0.00 3.58
33 34 4.669318 CTGTACGTACTTTCCGATCACAT 58.331 43.478 25.12 0.00 0.00 3.21
34 35 4.665212 TGTACGTACTTTCCGATCACATC 58.335 43.478 25.12 0.00 0.00 3.06
35 36 3.861276 ACGTACTTTCCGATCACATCA 57.139 42.857 0.00 0.00 0.00 3.07
36 37 3.508762 ACGTACTTTCCGATCACATCAC 58.491 45.455 0.00 0.00 0.00 3.06
37 38 3.057104 ACGTACTTTCCGATCACATCACA 60.057 43.478 0.00 0.00 0.00 3.58
38 39 3.303495 CGTACTTTCCGATCACATCACAC 59.697 47.826 0.00 0.00 0.00 3.82
39 40 2.337583 ACTTTCCGATCACATCACACG 58.662 47.619 0.00 0.00 0.00 4.49
40 41 1.660607 CTTTCCGATCACATCACACGG 59.339 52.381 0.00 0.00 44.09 4.94
41 42 0.108377 TTCCGATCACATCACACGGG 60.108 55.000 0.00 0.00 43.14 5.28
42 43 2.173669 CCGATCACATCACACGGGC 61.174 63.158 0.00 0.00 39.92 6.13
43 44 1.153568 CGATCACATCACACGGGCT 60.154 57.895 0.00 0.00 0.00 5.19
44 45 1.423721 CGATCACATCACACGGGCTG 61.424 60.000 0.00 0.00 0.00 4.85
45 46 0.391661 GATCACATCACACGGGCTGT 60.392 55.000 0.00 0.00 0.00 4.40
46 47 0.901827 ATCACATCACACGGGCTGTA 59.098 50.000 0.00 0.00 0.00 2.74
47 48 0.037697 TCACATCACACGGGCTGTAC 60.038 55.000 0.00 0.00 0.00 2.90
48 49 1.080093 ACATCACACGGGCTGTACG 60.080 57.895 0.00 0.00 37.36 3.67
49 50 1.080093 CATCACACGGGCTGTACGT 60.080 57.895 0.00 0.00 46.82 3.57
50 51 0.171679 CATCACACGGGCTGTACGTA 59.828 55.000 0.00 0.00 43.58 3.57
51 52 0.454600 ATCACACGGGCTGTACGTAG 59.545 55.000 0.00 0.00 43.58 3.51
52 53 0.890542 TCACACGGGCTGTACGTAGT 60.891 55.000 0.00 0.00 43.58 2.73
53 54 0.804364 CACACGGGCTGTACGTAGTA 59.196 55.000 0.00 0.00 43.58 1.82
67 68 3.869065 ACGTAGTACCCAATGGTCAATG 58.131 45.455 0.00 0.00 43.06 2.82
68 69 3.202906 CGTAGTACCCAATGGTCAATGG 58.797 50.000 0.00 0.00 43.06 3.16
69 70 3.118555 CGTAGTACCCAATGGTCAATGGA 60.119 47.826 6.63 0.00 43.06 3.41
70 71 4.444306 CGTAGTACCCAATGGTCAATGGAT 60.444 45.833 6.63 0.00 43.06 3.41
71 72 3.902218 AGTACCCAATGGTCAATGGATG 58.098 45.455 6.63 0.00 43.06 3.51
72 73 2.163810 ACCCAATGGTCAATGGATGG 57.836 50.000 6.63 0.00 43.06 3.51
73 74 1.645391 ACCCAATGGTCAATGGATGGA 59.355 47.619 6.63 0.00 43.06 3.41
74 75 2.044215 ACCCAATGGTCAATGGATGGAA 59.956 45.455 6.63 0.00 43.06 3.53
75 76 3.310805 ACCCAATGGTCAATGGATGGAAT 60.311 43.478 6.63 0.00 43.06 3.01
76 77 3.322828 CCCAATGGTCAATGGATGGAATC 59.677 47.826 6.63 0.00 44.55 2.52
77 78 4.220724 CCAATGGTCAATGGATGGAATCT 58.779 43.478 0.00 0.00 44.71 2.40
78 79 4.038763 CCAATGGTCAATGGATGGAATCTG 59.961 45.833 0.00 0.00 44.71 2.90
79 80 4.531357 ATGGTCAATGGATGGAATCTGT 57.469 40.909 0.00 0.00 44.71 3.41
80 81 3.889815 TGGTCAATGGATGGAATCTGTC 58.110 45.455 0.00 0.00 44.71 3.51
81 82 3.217626 GGTCAATGGATGGAATCTGTCC 58.782 50.000 0.00 0.00 44.71 4.02
90 91 2.380084 GGAATCTGTCCGTACAAGCA 57.620 50.000 0.00 0.00 36.40 3.91
91 92 2.000447 GGAATCTGTCCGTACAAGCAC 59.000 52.381 0.00 0.00 36.40 4.40
92 93 2.611971 GGAATCTGTCCGTACAAGCACA 60.612 50.000 0.00 0.00 36.40 4.57
93 94 2.370281 ATCTGTCCGTACAAGCACAG 57.630 50.000 0.00 0.00 38.09 3.66
94 95 1.324383 TCTGTCCGTACAAGCACAGA 58.676 50.000 8.41 8.41 42.34 3.41
95 96 1.000607 TCTGTCCGTACAAGCACAGAC 60.001 52.381 8.41 0.00 40.25 3.51
96 97 0.318360 TGTCCGTACAAGCACAGACG 60.318 55.000 0.00 0.00 29.97 4.18
97 98 0.039798 GTCCGTACAAGCACAGACGA 60.040 55.000 0.00 0.00 37.50 4.20
98 99 0.240145 TCCGTACAAGCACAGACGAG 59.760 55.000 0.00 0.00 37.50 4.18
99 100 1.344942 CCGTACAAGCACAGACGAGC 61.345 60.000 0.00 0.00 37.50 5.03
100 101 0.663269 CGTACAAGCACAGACGAGCA 60.663 55.000 0.00 0.00 37.50 4.26
101 102 1.497991 GTACAAGCACAGACGAGCAA 58.502 50.000 0.00 0.00 0.00 3.91
102 103 1.192534 GTACAAGCACAGACGAGCAAC 59.807 52.381 0.00 0.00 0.00 4.17
104 105 1.067416 AAGCACAGACGAGCAACGA 59.933 52.632 10.05 0.00 45.77 3.85
105 106 0.529773 AAGCACAGACGAGCAACGAA 60.530 50.000 10.05 0.00 45.77 3.85
106 107 1.201825 GCACAGACGAGCAACGAAC 59.798 57.895 10.05 4.36 45.77 3.95
107 108 1.487452 GCACAGACGAGCAACGAACA 61.487 55.000 10.05 0.00 45.77 3.18
108 109 0.927537 CACAGACGAGCAACGAACAA 59.072 50.000 10.05 0.00 45.77 2.83
109 110 1.326245 CACAGACGAGCAACGAACAAA 59.674 47.619 10.05 0.00 45.77 2.83
110 111 1.593006 ACAGACGAGCAACGAACAAAG 59.407 47.619 10.05 2.47 45.77 2.77
111 112 0.582005 AGACGAGCAACGAACAAAGC 59.418 50.000 10.05 0.00 45.77 3.51
112 113 0.303493 GACGAGCAACGAACAAAGCA 59.697 50.000 10.05 0.00 45.77 3.91
113 114 0.027586 ACGAGCAACGAACAAAGCAC 59.972 50.000 10.05 0.00 45.77 4.40
114 115 0.027455 CGAGCAACGAACAAAGCACA 59.973 50.000 0.00 0.00 45.77 4.57
115 116 1.530852 CGAGCAACGAACAAAGCACAA 60.531 47.619 0.00 0.00 45.77 3.33
116 117 2.111756 GAGCAACGAACAAAGCACAAG 58.888 47.619 0.00 0.00 0.00 3.16
117 118 1.742831 AGCAACGAACAAAGCACAAGA 59.257 42.857 0.00 0.00 0.00 3.02
118 119 2.111756 GCAACGAACAAAGCACAAGAG 58.888 47.619 0.00 0.00 0.00 2.85
119 120 2.477863 GCAACGAACAAAGCACAAGAGT 60.478 45.455 0.00 0.00 0.00 3.24
120 121 3.242608 GCAACGAACAAAGCACAAGAGTA 60.243 43.478 0.00 0.00 0.00 2.59
121 122 4.554723 GCAACGAACAAAGCACAAGAGTAT 60.555 41.667 0.00 0.00 0.00 2.12
122 123 5.510671 CAACGAACAAAGCACAAGAGTATT 58.489 37.500 0.00 0.00 0.00 1.89
123 124 6.655062 CAACGAACAAAGCACAAGAGTATTA 58.345 36.000 0.00 0.00 0.00 0.98
124 125 7.298122 CAACGAACAAAGCACAAGAGTATTAT 58.702 34.615 0.00 0.00 0.00 1.28
125 126 7.435068 ACGAACAAAGCACAAGAGTATTATT 57.565 32.000 0.00 0.00 0.00 1.40
126 127 7.298122 ACGAACAAAGCACAAGAGTATTATTG 58.702 34.615 0.00 0.00 0.00 1.90
127 128 6.742718 CGAACAAAGCACAAGAGTATTATTGG 59.257 38.462 0.00 0.00 0.00 3.16
128 129 5.954335 ACAAAGCACAAGAGTATTATTGGC 58.046 37.500 0.00 0.00 0.00 4.52
129 130 5.105756 ACAAAGCACAAGAGTATTATTGGCC 60.106 40.000 0.00 0.00 0.00 5.36
130 131 4.235079 AGCACAAGAGTATTATTGGCCA 57.765 40.909 0.00 0.00 0.00 5.36
131 132 3.947834 AGCACAAGAGTATTATTGGCCAC 59.052 43.478 3.88 0.00 0.00 5.01
132 133 3.242739 GCACAAGAGTATTATTGGCCACG 60.243 47.826 3.88 0.00 0.00 4.94
133 134 3.312421 CACAAGAGTATTATTGGCCACGG 59.688 47.826 3.88 0.00 0.00 4.94
134 135 3.199071 ACAAGAGTATTATTGGCCACGGA 59.801 43.478 3.88 0.00 0.00 4.69
135 136 3.470645 AGAGTATTATTGGCCACGGAC 57.529 47.619 3.88 0.00 0.00 4.79
136 137 2.104281 AGAGTATTATTGGCCACGGACC 59.896 50.000 3.88 0.00 0.00 4.46
137 138 1.841277 AGTATTATTGGCCACGGACCA 59.159 47.619 3.88 0.00 34.65 4.02
141 142 3.849064 TTGGCCACGGACCAAAAG 58.151 55.556 3.88 0.00 44.11 2.27
142 143 1.076632 TTGGCCACGGACCAAAAGT 60.077 52.632 3.88 0.00 44.11 2.66
143 144 0.684805 TTGGCCACGGACCAAAAGTT 60.685 50.000 3.88 0.00 44.11 2.66
144 145 0.183014 TGGCCACGGACCAAAAGTTA 59.817 50.000 0.00 0.00 33.12 2.24
145 146 0.879090 GGCCACGGACCAAAAGTTAG 59.121 55.000 0.00 0.00 0.00 2.34
146 147 0.879090 GCCACGGACCAAAAGTTAGG 59.121 55.000 0.00 0.00 0.00 2.69
147 148 1.543871 GCCACGGACCAAAAGTTAGGA 60.544 52.381 1.54 0.00 0.00 2.94
148 149 2.878526 GCCACGGACCAAAAGTTAGGAT 60.879 50.000 1.54 0.00 0.00 3.24
149 150 2.747446 CCACGGACCAAAAGTTAGGATG 59.253 50.000 1.54 0.00 0.00 3.51
150 151 2.747446 CACGGACCAAAAGTTAGGATGG 59.253 50.000 1.54 0.00 38.91 3.51
151 152 2.290705 ACGGACCAAAAGTTAGGATGGG 60.291 50.000 1.54 0.00 37.26 4.00
152 153 2.026636 CGGACCAAAAGTTAGGATGGGA 60.027 50.000 1.54 0.00 37.26 4.37
153 154 3.560453 CGGACCAAAAGTTAGGATGGGAA 60.560 47.826 1.54 0.00 37.26 3.97
154 155 4.610333 GGACCAAAAGTTAGGATGGGAAT 58.390 43.478 1.54 0.00 37.26 3.01
155 156 5.023452 GGACCAAAAGTTAGGATGGGAATT 58.977 41.667 1.54 0.00 37.26 2.17
156 157 5.127194 GGACCAAAAGTTAGGATGGGAATTC 59.873 44.000 0.00 0.00 37.26 2.17
157 158 5.023452 ACCAAAAGTTAGGATGGGAATTCC 58.977 41.667 16.74 16.74 37.26 3.01
158 159 5.222547 ACCAAAAGTTAGGATGGGAATTCCT 60.223 40.000 23.63 5.09 45.59 3.36
159 160 5.721480 CCAAAAGTTAGGATGGGAATTCCTT 59.279 40.000 23.63 11.93 40.84 3.36
160 161 6.127338 CCAAAAGTTAGGATGGGAATTCCTTC 60.127 42.308 23.63 18.99 40.84 3.46
161 162 5.796502 AAGTTAGGATGGGAATTCCTTCA 57.203 39.130 23.63 14.52 40.84 3.02
162 163 5.796502 AGTTAGGATGGGAATTCCTTCAA 57.203 39.130 23.63 9.70 40.84 2.69
163 164 6.152638 AGTTAGGATGGGAATTCCTTCAAA 57.847 37.500 23.63 14.64 40.84 2.69
164 165 6.561294 AGTTAGGATGGGAATTCCTTCAAAA 58.439 36.000 23.63 14.35 40.84 2.44
165 166 6.437477 AGTTAGGATGGGAATTCCTTCAAAAC 59.563 38.462 23.63 22.04 40.84 2.43
166 167 4.750941 AGGATGGGAATTCCTTCAAAACA 58.249 39.130 23.63 11.65 40.84 2.83
167 168 5.154418 AGGATGGGAATTCCTTCAAAACAA 58.846 37.500 23.63 0.10 40.84 2.83
168 169 5.246883 AGGATGGGAATTCCTTCAAAACAAG 59.753 40.000 23.63 0.00 40.84 3.16
169 170 5.012046 GGATGGGAATTCCTTCAAAACAAGT 59.988 40.000 23.63 0.00 40.41 3.16
170 171 5.948742 TGGGAATTCCTTCAAAACAAGTT 57.051 34.783 23.63 0.00 36.20 2.66
171 172 7.256154 GGATGGGAATTCCTTCAAAACAAGTTA 60.256 37.037 23.63 0.00 40.41 2.24
172 173 7.049799 TGGGAATTCCTTCAAAACAAGTTAG 57.950 36.000 23.63 0.00 36.20 2.34
173 174 6.041523 TGGGAATTCCTTCAAAACAAGTTAGG 59.958 38.462 23.63 0.00 36.20 2.69
174 175 6.266786 GGGAATTCCTTCAAAACAAGTTAGGA 59.733 38.462 23.63 0.00 35.95 2.94
175 176 7.039011 GGGAATTCCTTCAAAACAAGTTAGGAT 60.039 37.037 23.63 0.00 32.25 3.24
176 177 7.814587 GGAATTCCTTCAAAACAAGTTAGGATG 59.185 37.037 17.73 0.15 32.25 3.51
177 178 6.648879 TTCCTTCAAAACAAGTTAGGATGG 57.351 37.500 3.70 7.36 32.25 3.51
178 179 5.076873 TCCTTCAAAACAAGTTAGGATGGG 58.923 41.667 13.67 8.23 0.00 4.00
179 180 5.076873 CCTTCAAAACAAGTTAGGATGGGA 58.923 41.667 9.16 0.00 0.00 4.37
180 181 5.538433 CCTTCAAAACAAGTTAGGATGGGAA 59.462 40.000 9.16 0.00 0.00 3.97
181 182 6.211384 CCTTCAAAACAAGTTAGGATGGGAAT 59.789 38.462 9.16 0.00 0.00 3.01
182 183 6.834168 TCAAAACAAGTTAGGATGGGAATC 57.166 37.500 0.00 0.00 0.00 2.52
183 184 5.414454 TCAAAACAAGTTAGGATGGGAATCG 59.586 40.000 0.00 0.00 0.00 3.34
184 185 3.560636 ACAAGTTAGGATGGGAATCGG 57.439 47.619 0.00 0.00 0.00 4.18
185 186 2.844348 ACAAGTTAGGATGGGAATCGGT 59.156 45.455 0.00 0.00 0.00 4.69
186 187 3.206150 CAAGTTAGGATGGGAATCGGTG 58.794 50.000 0.00 0.00 0.00 4.94
187 188 1.141053 AGTTAGGATGGGAATCGGTGC 59.859 52.381 0.00 0.00 0.00 5.01
188 189 1.134220 GTTAGGATGGGAATCGGTGCA 60.134 52.381 0.00 0.00 0.00 4.57
189 190 1.208706 TAGGATGGGAATCGGTGCAA 58.791 50.000 0.00 0.00 0.00 4.08
190 191 0.331278 AGGATGGGAATCGGTGCAAA 59.669 50.000 0.00 0.00 0.00 3.68
191 192 1.181786 GGATGGGAATCGGTGCAAAA 58.818 50.000 0.00 0.00 0.00 2.44
192 193 1.756538 GGATGGGAATCGGTGCAAAAT 59.243 47.619 0.00 0.00 0.00 1.82
193 194 2.955660 GGATGGGAATCGGTGCAAAATA 59.044 45.455 0.00 0.00 0.00 1.40
194 195 3.383185 GGATGGGAATCGGTGCAAAATAA 59.617 43.478 0.00 0.00 0.00 1.40
195 196 4.142049 GGATGGGAATCGGTGCAAAATAAA 60.142 41.667 0.00 0.00 0.00 1.40
196 197 4.448537 TGGGAATCGGTGCAAAATAAAG 57.551 40.909 0.00 0.00 0.00 1.85
197 198 3.829601 TGGGAATCGGTGCAAAATAAAGT 59.170 39.130 0.00 0.00 0.00 2.66
198 199 4.173256 GGGAATCGGTGCAAAATAAAGTG 58.827 43.478 0.00 0.00 0.00 3.16
199 200 4.321675 GGGAATCGGTGCAAAATAAAGTGT 60.322 41.667 0.00 0.00 0.00 3.55
200 201 4.621034 GGAATCGGTGCAAAATAAAGTGTG 59.379 41.667 0.00 0.00 0.00 3.82
201 202 4.846779 ATCGGTGCAAAATAAAGTGTGT 57.153 36.364 0.00 0.00 0.00 3.72
202 203 4.640789 TCGGTGCAAAATAAAGTGTGTT 57.359 36.364 0.00 0.00 0.00 3.32
203 204 5.000012 TCGGTGCAAAATAAAGTGTGTTT 58.000 34.783 0.00 0.00 0.00 2.83
204 205 5.038033 TCGGTGCAAAATAAAGTGTGTTTC 58.962 37.500 0.00 0.00 0.00 2.78
205 206 4.085822 CGGTGCAAAATAAAGTGTGTTTCG 60.086 41.667 0.00 0.00 0.00 3.46
206 207 5.038033 GGTGCAAAATAAAGTGTGTTTCGA 58.962 37.500 0.00 0.00 0.00 3.71
207 208 5.517054 GGTGCAAAATAAAGTGTGTTTCGAA 59.483 36.000 0.00 0.00 0.00 3.71
208 209 6.291585 GGTGCAAAATAAAGTGTGTTTCGAAG 60.292 38.462 0.00 0.00 0.00 3.79
209 210 5.746245 TGCAAAATAAAGTGTGTTTCGAAGG 59.254 36.000 0.00 0.00 0.00 3.46
210 211 5.174943 GCAAAATAAAGTGTGTTTCGAAGGG 59.825 40.000 0.00 0.00 0.00 3.95
211 212 6.270064 CAAAATAAAGTGTGTTTCGAAGGGT 58.730 36.000 0.00 0.00 0.00 4.34
212 213 6.459670 AAATAAAGTGTGTTTCGAAGGGTT 57.540 33.333 0.00 0.00 0.00 4.11
213 214 5.684550 ATAAAGTGTGTTTCGAAGGGTTC 57.315 39.130 0.00 0.00 0.00 3.62
214 215 3.277142 AAGTGTGTTTCGAAGGGTTCT 57.723 42.857 0.00 0.00 0.00 3.01
215 216 4.411256 AAGTGTGTTTCGAAGGGTTCTA 57.589 40.909 0.00 0.00 0.00 2.10
216 217 3.991367 AGTGTGTTTCGAAGGGTTCTAG 58.009 45.455 0.00 0.00 0.00 2.43
217 218 3.640029 AGTGTGTTTCGAAGGGTTCTAGA 59.360 43.478 0.00 0.00 0.00 2.43
218 219 4.100498 AGTGTGTTTCGAAGGGTTCTAGAA 59.900 41.667 0.00 0.00 0.00 2.10
219 220 4.812626 GTGTGTTTCGAAGGGTTCTAGAAA 59.187 41.667 6.78 0.00 31.82 2.52
220 221 5.295045 GTGTGTTTCGAAGGGTTCTAGAAAA 59.705 40.000 6.78 0.00 34.21 2.29
221 222 5.295045 TGTGTTTCGAAGGGTTCTAGAAAAC 59.705 40.000 6.78 6.14 34.21 2.43
222 223 5.526479 GTGTTTCGAAGGGTTCTAGAAAACT 59.474 40.000 6.78 5.57 34.21 2.66
223 224 5.756833 TGTTTCGAAGGGTTCTAGAAAACTC 59.243 40.000 6.78 0.00 34.21 3.01
224 225 5.803237 TTCGAAGGGTTCTAGAAAACTCT 57.197 39.130 6.78 0.00 41.79 3.24
225 226 5.135508 TCGAAGGGTTCTAGAAAACTCTG 57.864 43.478 6.78 5.08 39.05 3.35
226 227 4.831155 TCGAAGGGTTCTAGAAAACTCTGA 59.169 41.667 6.78 7.11 39.05 3.27
227 228 5.047943 TCGAAGGGTTCTAGAAAACTCTGAG 60.048 44.000 6.78 2.45 39.05 3.35
228 229 5.047943 CGAAGGGTTCTAGAAAACTCTGAGA 60.048 44.000 12.44 0.00 39.05 3.27
229 230 6.516860 CGAAGGGTTCTAGAAAACTCTGAGAA 60.517 42.308 12.44 0.00 39.05 2.87
230 231 6.749036 AGGGTTCTAGAAAACTCTGAGAAA 57.251 37.500 12.44 0.00 38.54 2.52
231 232 7.138054 AGGGTTCTAGAAAACTCTGAGAAAA 57.862 36.000 12.44 0.00 38.54 2.29
232 233 7.574607 AGGGTTCTAGAAAACTCTGAGAAAAA 58.425 34.615 12.44 0.00 38.54 1.94
233 234 8.221251 AGGGTTCTAGAAAACTCTGAGAAAAAT 58.779 33.333 12.44 0.00 38.54 1.82
234 235 8.851145 GGGTTCTAGAAAACTCTGAGAAAAATT 58.149 33.333 12.44 0.00 0.00 1.82
243 244 8.634475 AAACTCTGAGAAAAATTAAAGTGTGC 57.366 30.769 12.44 0.00 0.00 4.57
244 245 6.739112 ACTCTGAGAAAAATTAAAGTGTGCC 58.261 36.000 12.44 0.00 0.00 5.01
245 246 5.757886 TCTGAGAAAAATTAAAGTGTGCCG 58.242 37.500 0.00 0.00 0.00 5.69
246 247 4.865776 TGAGAAAAATTAAAGTGTGCCGG 58.134 39.130 0.00 0.00 0.00 6.13
247 248 4.580995 TGAGAAAAATTAAAGTGTGCCGGA 59.419 37.500 5.05 0.00 0.00 5.14
248 249 4.866921 AGAAAAATTAAAGTGTGCCGGAC 58.133 39.130 5.05 0.46 0.00 4.79
249 250 2.981400 AAATTAAAGTGTGCCGGACG 57.019 45.000 5.05 0.00 0.00 4.79
250 251 1.161843 AATTAAAGTGTGCCGGACGG 58.838 50.000 5.05 6.35 38.57 4.79
251 252 0.322322 ATTAAAGTGTGCCGGACGGA 59.678 50.000 15.99 0.00 37.50 4.69
252 253 0.106335 TTAAAGTGTGCCGGACGGAA 59.894 50.000 15.99 0.00 37.50 4.30
253 254 0.320073 TAAAGTGTGCCGGACGGAAG 60.320 55.000 15.99 0.00 37.50 3.46
254 255 2.035237 AAAGTGTGCCGGACGGAAGA 62.035 55.000 15.99 0.00 37.50 2.87
255 256 1.827399 AAGTGTGCCGGACGGAAGAT 61.827 55.000 15.99 0.00 37.50 2.40
256 257 2.100631 GTGTGCCGGACGGAAGATG 61.101 63.158 15.99 0.00 37.50 2.90
257 258 3.195698 GTGCCGGACGGAAGATGC 61.196 66.667 15.99 0.00 37.50 3.91
258 259 3.390521 TGCCGGACGGAAGATGCT 61.391 61.111 15.99 0.00 37.50 3.79
259 260 2.586357 GCCGGACGGAAGATGCTC 60.586 66.667 15.99 0.00 37.50 4.26
260 261 2.107141 CCGGACGGAAGATGCTCC 59.893 66.667 4.40 0.00 37.50 4.70
270 271 3.762779 GGAAGATGCTCCGTGAAATTTG 58.237 45.455 0.00 0.00 0.00 2.32
271 272 3.440173 GGAAGATGCTCCGTGAAATTTGA 59.560 43.478 0.00 0.00 0.00 2.69
272 273 4.082787 GGAAGATGCTCCGTGAAATTTGAA 60.083 41.667 0.00 0.00 0.00 2.69
273 274 5.452078 AAGATGCTCCGTGAAATTTGAAA 57.548 34.783 0.00 0.00 0.00 2.69
274 275 5.649782 AGATGCTCCGTGAAATTTGAAAT 57.350 34.783 0.00 0.00 0.00 2.17
275 276 6.029346 AGATGCTCCGTGAAATTTGAAATT 57.971 33.333 0.00 0.00 0.00 1.82
276 277 6.458210 AGATGCTCCGTGAAATTTGAAATTT 58.542 32.000 15.10 15.10 0.00 1.82
277 278 6.587608 AGATGCTCCGTGAAATTTGAAATTTC 59.412 34.615 27.70 27.70 38.23 2.17
278 279 4.679197 TGCTCCGTGAAATTTGAAATTTCG 59.321 37.500 28.11 21.13 40.02 3.46
279 280 4.915085 GCTCCGTGAAATTTGAAATTTCGA 59.085 37.500 28.11 20.95 40.02 3.71
280 281 5.059710 GCTCCGTGAAATTTGAAATTTCGAG 59.940 40.000 28.11 26.72 40.02 4.04
281 282 5.457140 TCCGTGAAATTTGAAATTTCGAGG 58.543 37.500 30.07 30.07 40.02 4.63
282 283 5.009210 TCCGTGAAATTTGAAATTTCGAGGT 59.991 36.000 31.90 11.40 40.02 3.85
283 284 5.689961 CCGTGAAATTTGAAATTTCGAGGTT 59.310 36.000 28.88 9.04 40.02 3.50
284 285 6.858993 CCGTGAAATTTGAAATTTCGAGGTTA 59.141 34.615 28.88 16.15 40.02 2.85
285 286 7.380065 CCGTGAAATTTGAAATTTCGAGGTTAA 59.620 33.333 28.88 15.66 40.02 2.01
286 287 8.747666 CGTGAAATTTGAAATTTCGAGGTTAAA 58.252 29.630 28.11 12.82 40.02 1.52
292 293 9.981114 ATTTGAAATTTCGAGGTTAAATTCAGT 57.019 25.926 13.34 0.00 35.91 3.41
293 294 9.810545 TTTGAAATTTCGAGGTTAAATTCAGTT 57.189 25.926 13.34 0.00 35.91 3.16
294 295 9.810545 TTGAAATTTCGAGGTTAAATTCAGTTT 57.189 25.926 13.34 0.00 35.91 2.66
295 296 9.458374 TGAAATTTCGAGGTTAAATTCAGTTTC 57.542 29.630 13.34 0.00 35.91 2.78
296 297 9.458374 GAAATTTCGAGGTTAAATTCAGTTTCA 57.542 29.630 1.68 0.00 35.91 2.69
297 298 8.797266 AATTTCGAGGTTAAATTCAGTTTCAC 57.203 30.769 0.00 0.00 32.43 3.18
298 299 6.928979 TTCGAGGTTAAATTCAGTTTCACA 57.071 33.333 0.00 0.00 0.00 3.58
299 300 7.504924 TTCGAGGTTAAATTCAGTTTCACAT 57.495 32.000 0.00 0.00 0.00 3.21
300 301 7.504924 TCGAGGTTAAATTCAGTTTCACATT 57.495 32.000 0.00 0.00 0.00 2.71
301 302 7.359595 TCGAGGTTAAATTCAGTTTCACATTG 58.640 34.615 0.00 0.00 0.00 2.82
302 303 6.582295 CGAGGTTAAATTCAGTTTCACATTGG 59.418 38.462 0.00 0.00 0.00 3.16
303 304 7.521423 CGAGGTTAAATTCAGTTTCACATTGGA 60.521 37.037 0.00 0.00 0.00 3.53
304 305 7.661040 AGGTTAAATTCAGTTTCACATTGGAG 58.339 34.615 0.00 0.00 0.00 3.86
305 306 6.868339 GGTTAAATTCAGTTTCACATTGGAGG 59.132 38.462 0.00 0.00 0.00 4.30
306 307 7.433680 GTTAAATTCAGTTTCACATTGGAGGT 58.566 34.615 0.00 0.00 0.00 3.85
307 308 8.573035 GTTAAATTCAGTTTCACATTGGAGGTA 58.427 33.333 0.00 0.00 0.00 3.08
308 309 6.575162 AATTCAGTTTCACATTGGAGGTAC 57.425 37.500 0.00 0.00 0.00 3.34
310 311 6.428083 TTCAGTTTCACATTGGAGGTACTA 57.572 37.500 0.00 0.00 41.55 1.82
311 312 6.620877 TCAGTTTCACATTGGAGGTACTAT 57.379 37.500 0.00 0.00 41.55 2.12
312 313 6.406370 TCAGTTTCACATTGGAGGTACTATG 58.594 40.000 0.00 0.00 41.55 2.23
313 314 5.586243 CAGTTTCACATTGGAGGTACTATGG 59.414 44.000 0.00 0.00 41.55 2.74
314 315 5.487488 AGTTTCACATTGGAGGTACTATGGA 59.513 40.000 0.00 0.00 41.55 3.41
315 316 6.012858 AGTTTCACATTGGAGGTACTATGGAA 60.013 38.462 0.00 0.00 41.55 3.53
316 317 5.614324 TCACATTGGAGGTACTATGGAAG 57.386 43.478 0.00 0.00 41.55 3.46
317 318 5.277250 TCACATTGGAGGTACTATGGAAGA 58.723 41.667 0.00 0.00 41.55 2.87
318 319 5.724370 TCACATTGGAGGTACTATGGAAGAA 59.276 40.000 0.00 0.00 41.55 2.52
319 320 5.817816 CACATTGGAGGTACTATGGAAGAAC 59.182 44.000 0.00 0.00 41.55 3.01
320 321 4.730949 TTGGAGGTACTATGGAAGAACG 57.269 45.455 0.00 0.00 41.55 3.95
321 322 3.028850 TGGAGGTACTATGGAAGAACGG 58.971 50.000 0.00 0.00 41.55 4.44
322 323 3.294214 GGAGGTACTATGGAAGAACGGA 58.706 50.000 0.00 0.00 41.55 4.69
323 324 3.067883 GGAGGTACTATGGAAGAACGGAC 59.932 52.174 0.00 0.00 41.55 4.79
324 325 2.686915 AGGTACTATGGAAGAACGGACG 59.313 50.000 0.00 0.00 36.02 4.79
325 326 2.424956 GGTACTATGGAAGAACGGACGT 59.575 50.000 0.00 0.00 0.00 4.34
326 327 3.119352 GGTACTATGGAAGAACGGACGTT 60.119 47.826 10.13 10.13 41.54 3.99
327 328 7.114204 AGGTACTATGGAAGAACGGACGTTC 62.114 48.000 25.21 25.21 46.18 3.95
343 344 4.939439 GGACGTTCAACAAATATGTAGGGT 59.061 41.667 0.00 0.00 39.40 4.34
362 363 1.372872 GTGTTTGGTTGCCCGCATC 60.373 57.895 0.00 0.00 0.00 3.91
363 364 2.126502 GTTTGGTTGCCCGCATCG 60.127 61.111 0.00 0.00 0.00 3.84
364 365 2.281831 TTTGGTTGCCCGCATCGA 60.282 55.556 0.00 0.00 0.00 3.59
366 367 3.545124 TTGGTTGCCCGCATCGAGT 62.545 57.895 0.00 0.00 0.00 4.18
371 372 2.203070 GCCCGCATCGAGTCCAAT 60.203 61.111 0.00 0.00 0.00 3.16
378 379 0.467384 CATCGAGTCCAATCAGGCCT 59.533 55.000 0.00 0.00 37.29 5.19
408 409 0.315251 GAAGAGGCCTGTTTGGTTGC 59.685 55.000 17.52 0.00 38.35 4.17
412 413 1.832167 GGCCTGTTTGGTTGCCTGA 60.832 57.895 0.00 0.00 40.77 3.86
413 414 1.187567 GGCCTGTTTGGTTGCCTGAT 61.188 55.000 0.00 0.00 40.77 2.90
484 485 2.100631 CGCTGGAAACGCTCGGATT 61.101 57.895 0.00 0.00 0.00 3.01
584 585 2.110734 GAGATGGAAATCTGGCGCGC 62.111 60.000 25.94 25.94 0.00 6.86
622 624 1.002011 GCCTCACCCCCTTTCACTC 60.002 63.158 0.00 0.00 0.00 3.51
661 663 3.068881 CCCCCTTTCACTCGCTCA 58.931 61.111 0.00 0.00 0.00 4.26
662 664 1.376037 CCCCCTTTCACTCGCTCAC 60.376 63.158 0.00 0.00 0.00 3.51
663 665 1.376037 CCCCTTTCACTCGCTCACC 60.376 63.158 0.00 0.00 0.00 4.02
664 666 1.376037 CCCTTTCACTCGCTCACCC 60.376 63.158 0.00 0.00 0.00 4.61
665 667 1.371183 CCTTTCACTCGCTCACCCA 59.629 57.895 0.00 0.00 0.00 4.51
666 668 0.036010 CCTTTCACTCGCTCACCCAT 60.036 55.000 0.00 0.00 0.00 4.00
667 669 1.207089 CCTTTCACTCGCTCACCCATA 59.793 52.381 0.00 0.00 0.00 2.74
668 670 2.544685 CTTTCACTCGCTCACCCATAG 58.455 52.381 0.00 0.00 0.00 2.23
669 671 0.175760 TTCACTCGCTCACCCATAGC 59.824 55.000 0.00 0.00 36.60 2.97
670 672 1.227380 CACTCGCTCACCCATAGCC 60.227 63.158 0.00 0.00 36.60 3.93
671 673 1.685765 ACTCGCTCACCCATAGCCA 60.686 57.895 0.00 0.00 36.60 4.75
672 674 1.227380 CTCGCTCACCCATAGCCAC 60.227 63.158 0.00 0.00 36.60 5.01
673 675 1.680522 CTCGCTCACCCATAGCCACT 61.681 60.000 0.00 0.00 36.60 4.00
759 766 1.604278 GGCGGCTACAATTTCAGATCC 59.396 52.381 0.00 0.00 0.00 3.36
911 929 4.796495 CCGGTAAGCAGCACCCCC 62.796 72.222 0.00 0.00 31.96 5.40
941 959 0.900421 GTTAGGTCGGTGGTTAGGCT 59.100 55.000 0.00 0.00 0.00 4.58
1067 1085 1.098050 GTGATTCAGGCATGGGTCAC 58.902 55.000 16.86 16.86 35.55 3.67
1088 1106 1.198637 GTTCATGCACCAGAGAGTTGC 59.801 52.381 0.00 0.00 0.00 4.17
1298 1319 2.705658 ATCAACACCAGTGTGGAAGAGA 59.294 45.455 11.88 1.56 45.72 3.10
1767 1789 0.963962 AAACCGTGGTAGAAGCGAGA 59.036 50.000 0.00 0.00 0.00 4.04
1978 2000 5.096169 CGATCGATGACTGTTAACTGAACT 58.904 41.667 18.21 2.99 38.98 3.01
2085 2109 0.323629 GGATGAACAGTTCCCGGTGA 59.676 55.000 10.93 0.00 0.00 4.02
2367 2391 0.801872 CCGTGGATGAACAATCGCAA 59.198 50.000 0.00 0.00 35.99 4.85
2463 2488 4.289101 TGTCCCGTGGAGTCCCGA 62.289 66.667 18.27 2.12 34.29 5.14
2549 2574 3.553828 AGTCTGTTTCCTCCGTTTTGA 57.446 42.857 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.917933 AGTACGTACAGCCCGTGTATA 58.082 47.619 26.55 0.00 43.70 1.47
3 4 1.533625 AAGTACGTACAGCCCGTGTA 58.466 50.000 26.55 0.00 40.94 2.90
4 5 0.675633 AAAGTACGTACAGCCCGTGT 59.324 50.000 26.55 1.16 43.86 4.49
5 6 1.343506 GAAAGTACGTACAGCCCGTG 58.656 55.000 26.55 0.00 39.22 4.94
6 7 0.244721 GGAAAGTACGTACAGCCCGT 59.755 55.000 26.55 2.69 42.06 5.28
7 8 0.799534 CGGAAAGTACGTACAGCCCG 60.800 60.000 26.55 26.35 0.00 6.13
9 10 2.159338 TGATCGGAAAGTACGTACAGCC 60.159 50.000 26.55 21.00 0.00 4.85
10 11 2.850647 GTGATCGGAAAGTACGTACAGC 59.149 50.000 26.55 14.72 0.00 4.40
11 12 4.087510 TGTGATCGGAAAGTACGTACAG 57.912 45.455 26.55 12.38 0.00 2.74
12 13 4.156373 TGATGTGATCGGAAAGTACGTACA 59.844 41.667 26.55 6.07 0.00 2.90
13 14 4.498323 GTGATGTGATCGGAAAGTACGTAC 59.502 45.833 18.10 18.10 0.00 3.67
14 15 4.156373 TGTGATGTGATCGGAAAGTACGTA 59.844 41.667 0.00 0.00 0.00 3.57
15 16 3.057104 TGTGATGTGATCGGAAAGTACGT 60.057 43.478 0.00 0.00 0.00 3.57
16 17 3.303495 GTGTGATGTGATCGGAAAGTACG 59.697 47.826 0.00 0.00 0.00 3.67
17 18 3.303495 CGTGTGATGTGATCGGAAAGTAC 59.697 47.826 0.00 0.00 0.00 2.73
18 19 3.507786 CGTGTGATGTGATCGGAAAGTA 58.492 45.455 0.00 0.00 0.00 2.24
19 20 2.337583 CGTGTGATGTGATCGGAAAGT 58.662 47.619 0.00 0.00 0.00 2.66
20 21 1.660607 CCGTGTGATGTGATCGGAAAG 59.339 52.381 0.00 0.00 43.22 2.62
21 22 1.674519 CCCGTGTGATGTGATCGGAAA 60.675 52.381 3.45 0.00 43.22 3.13
22 23 0.108377 CCCGTGTGATGTGATCGGAA 60.108 55.000 3.45 0.00 43.22 4.30
23 24 1.515487 CCCGTGTGATGTGATCGGA 59.485 57.895 3.45 0.00 43.22 4.55
24 25 2.173669 GCCCGTGTGATGTGATCGG 61.174 63.158 0.00 0.00 40.72 4.18
25 26 1.153568 AGCCCGTGTGATGTGATCG 60.154 57.895 0.00 0.00 0.00 3.69
26 27 0.391661 ACAGCCCGTGTGATGTGATC 60.392 55.000 0.00 0.00 38.28 2.92
27 28 0.901827 TACAGCCCGTGTGATGTGAT 59.098 50.000 0.00 0.00 40.69 3.06
28 29 0.037697 GTACAGCCCGTGTGATGTGA 60.038 55.000 0.00 0.00 40.69 3.58
29 30 1.351430 CGTACAGCCCGTGTGATGTG 61.351 60.000 0.00 0.00 40.69 3.21
30 31 1.080093 CGTACAGCCCGTGTGATGT 60.080 57.895 0.00 0.00 40.69 3.06
31 32 0.171679 TACGTACAGCCCGTGTGATG 59.828 55.000 0.00 0.00 40.69 3.07
32 33 0.454600 CTACGTACAGCCCGTGTGAT 59.545 55.000 0.00 0.00 40.69 3.06
33 34 0.890542 ACTACGTACAGCCCGTGTGA 60.891 55.000 0.00 0.00 40.69 3.58
34 35 0.804364 TACTACGTACAGCCCGTGTG 59.196 55.000 0.00 0.00 40.69 3.82
35 36 0.804989 GTACTACGTACAGCCCGTGT 59.195 55.000 0.00 0.00 43.86 4.49
36 37 0.099436 GGTACTACGTACAGCCCGTG 59.901 60.000 6.51 0.00 40.41 4.94
37 38 1.032114 GGGTACTACGTACAGCCCGT 61.032 60.000 8.77 0.00 40.41 5.28
38 39 1.031571 TGGGTACTACGTACAGCCCG 61.032 60.000 14.85 0.00 40.41 6.13
39 40 1.185315 TTGGGTACTACGTACAGCCC 58.815 55.000 14.85 14.29 40.41 5.19
40 41 2.482490 CCATTGGGTACTACGTACAGCC 60.482 54.545 11.90 11.90 40.41 4.85
41 42 2.817901 CCATTGGGTACTACGTACAGC 58.182 52.381 6.51 0.00 40.41 4.40
54 55 2.457813 TCCATCCATTGACCATTGGG 57.542 50.000 7.78 0.00 41.29 4.12
55 56 4.038763 CAGATTCCATCCATTGACCATTGG 59.961 45.833 0.00 0.00 34.14 3.16
56 57 4.647853 ACAGATTCCATCCATTGACCATTG 59.352 41.667 0.00 0.00 0.00 2.82
57 58 4.875389 ACAGATTCCATCCATTGACCATT 58.125 39.130 0.00 0.00 0.00 3.16
58 59 4.467769 GACAGATTCCATCCATTGACCAT 58.532 43.478 0.00 0.00 0.00 3.55
59 60 3.371917 GGACAGATTCCATCCATTGACCA 60.372 47.826 0.00 0.00 45.10 4.02
60 61 3.217626 GGACAGATTCCATCCATTGACC 58.782 50.000 0.00 0.00 45.10 4.02
61 62 2.874701 CGGACAGATTCCATCCATTGAC 59.125 50.000 5.03 0.00 46.29 3.18
62 63 2.505407 ACGGACAGATTCCATCCATTGA 59.495 45.455 5.03 0.00 46.29 2.57
63 64 2.923121 ACGGACAGATTCCATCCATTG 58.077 47.619 5.03 0.00 46.29 2.82
64 65 3.454447 TGTACGGACAGATTCCATCCATT 59.546 43.478 0.00 0.00 46.29 3.16
65 66 3.038280 TGTACGGACAGATTCCATCCAT 58.962 45.455 0.00 0.00 46.29 3.41
66 67 2.462723 TGTACGGACAGATTCCATCCA 58.537 47.619 0.00 0.00 46.29 3.41
67 68 3.458189 CTTGTACGGACAGATTCCATCC 58.542 50.000 0.00 0.00 46.29 3.51
68 69 2.866762 GCTTGTACGGACAGATTCCATC 59.133 50.000 0.00 0.00 46.29 3.51
69 70 2.236146 TGCTTGTACGGACAGATTCCAT 59.764 45.455 0.00 0.00 46.29 3.41
70 71 1.621317 TGCTTGTACGGACAGATTCCA 59.379 47.619 0.00 0.00 46.29 3.53
71 72 2.000447 GTGCTTGTACGGACAGATTCC 59.000 52.381 0.00 0.00 41.75 3.01
72 73 2.683968 TGTGCTTGTACGGACAGATTC 58.316 47.619 0.00 0.00 36.76 2.52
73 74 2.831685 TGTGCTTGTACGGACAGATT 57.168 45.000 0.00 0.00 36.76 2.40
79 80 0.240145 CTCGTCTGTGCTTGTACGGA 59.760 55.000 0.00 0.00 36.08 4.69
80 81 1.344942 GCTCGTCTGTGCTTGTACGG 61.345 60.000 0.00 0.00 36.08 4.02
81 82 0.663269 TGCTCGTCTGTGCTTGTACG 60.663 55.000 0.00 0.00 35.65 3.67
82 83 1.192534 GTTGCTCGTCTGTGCTTGTAC 59.807 52.381 0.00 0.00 35.65 2.90
83 84 1.497991 GTTGCTCGTCTGTGCTTGTA 58.502 50.000 0.00 0.00 35.65 2.41
84 85 1.490693 CGTTGCTCGTCTGTGCTTGT 61.491 55.000 0.00 0.00 35.65 3.16
85 86 1.202568 CGTTGCTCGTCTGTGCTTG 59.797 57.895 0.00 0.00 35.65 4.01
86 87 0.529773 TTCGTTGCTCGTCTGTGCTT 60.530 50.000 2.39 0.00 40.80 3.91
87 88 1.067416 TTCGTTGCTCGTCTGTGCT 59.933 52.632 2.39 0.00 40.80 4.40
88 89 1.201825 GTTCGTTGCTCGTCTGTGC 59.798 57.895 2.39 0.00 40.80 4.57
89 90 0.927537 TTGTTCGTTGCTCGTCTGTG 59.072 50.000 2.39 0.00 40.80 3.66
90 91 1.593006 CTTTGTTCGTTGCTCGTCTGT 59.407 47.619 2.39 0.00 40.80 3.41
91 92 1.657538 GCTTTGTTCGTTGCTCGTCTG 60.658 52.381 2.39 0.00 40.80 3.51
92 93 0.582005 GCTTTGTTCGTTGCTCGTCT 59.418 50.000 2.39 0.00 40.80 4.18
93 94 0.303493 TGCTTTGTTCGTTGCTCGTC 59.697 50.000 2.39 0.00 40.80 4.20
94 95 0.027586 GTGCTTTGTTCGTTGCTCGT 59.972 50.000 2.39 0.00 40.80 4.18
95 96 0.027455 TGTGCTTTGTTCGTTGCTCG 59.973 50.000 0.00 0.00 41.41 5.03
96 97 2.111756 CTTGTGCTTTGTTCGTTGCTC 58.888 47.619 0.00 0.00 0.00 4.26
97 98 1.742831 TCTTGTGCTTTGTTCGTTGCT 59.257 42.857 0.00 0.00 0.00 3.91
98 99 2.111756 CTCTTGTGCTTTGTTCGTTGC 58.888 47.619 0.00 0.00 0.00 4.17
99 100 3.405170 ACTCTTGTGCTTTGTTCGTTG 57.595 42.857 0.00 0.00 0.00 4.10
100 101 5.751243 AATACTCTTGTGCTTTGTTCGTT 57.249 34.783 0.00 0.00 0.00 3.85
101 102 7.298122 CAATAATACTCTTGTGCTTTGTTCGT 58.702 34.615 0.00 0.00 0.00 3.85
102 103 6.742718 CCAATAATACTCTTGTGCTTTGTTCG 59.257 38.462 0.00 0.00 0.00 3.95
103 104 6.528072 GCCAATAATACTCTTGTGCTTTGTTC 59.472 38.462 0.00 0.00 0.00 3.18
104 105 6.389906 GCCAATAATACTCTTGTGCTTTGTT 58.610 36.000 0.00 0.00 0.00 2.83
105 106 5.105756 GGCCAATAATACTCTTGTGCTTTGT 60.106 40.000 0.00 0.00 0.00 2.83
106 107 5.105797 TGGCCAATAATACTCTTGTGCTTTG 60.106 40.000 0.61 0.00 0.00 2.77
107 108 5.016173 TGGCCAATAATACTCTTGTGCTTT 58.984 37.500 0.61 0.00 0.00 3.51
108 109 4.399303 GTGGCCAATAATACTCTTGTGCTT 59.601 41.667 7.24 0.00 0.00 3.91
109 110 3.947834 GTGGCCAATAATACTCTTGTGCT 59.052 43.478 7.24 0.00 0.00 4.40
110 111 3.242739 CGTGGCCAATAATACTCTTGTGC 60.243 47.826 7.24 0.00 0.00 4.57
111 112 3.312421 CCGTGGCCAATAATACTCTTGTG 59.688 47.826 7.24 0.00 0.00 3.33
112 113 3.199071 TCCGTGGCCAATAATACTCTTGT 59.801 43.478 7.24 0.00 0.00 3.16
113 114 3.560068 GTCCGTGGCCAATAATACTCTTG 59.440 47.826 7.24 0.00 0.00 3.02
114 115 3.433173 GGTCCGTGGCCAATAATACTCTT 60.433 47.826 7.24 0.00 0.00 2.85
115 116 2.104281 GGTCCGTGGCCAATAATACTCT 59.896 50.000 7.24 0.00 0.00 3.24
116 117 2.158871 TGGTCCGTGGCCAATAATACTC 60.159 50.000 7.24 0.00 32.29 2.59
117 118 1.841277 TGGTCCGTGGCCAATAATACT 59.159 47.619 7.24 0.00 32.29 2.12
118 119 2.335316 TGGTCCGTGGCCAATAATAC 57.665 50.000 7.24 1.24 32.29 1.89
119 120 3.367646 TTTGGTCCGTGGCCAATAATA 57.632 42.857 7.24 0.00 44.44 0.98
120 121 2.223803 TTTGGTCCGTGGCCAATAAT 57.776 45.000 7.24 0.00 44.44 1.28
121 122 1.889829 CTTTTGGTCCGTGGCCAATAA 59.110 47.619 7.24 0.00 44.44 1.40
122 123 1.202952 ACTTTTGGTCCGTGGCCAATA 60.203 47.619 7.24 5.73 44.44 1.90
123 124 0.469144 ACTTTTGGTCCGTGGCCAAT 60.469 50.000 7.24 0.00 44.44 3.16
124 125 0.684805 AACTTTTGGTCCGTGGCCAA 60.685 50.000 7.24 5.94 43.51 4.52
125 126 0.183014 TAACTTTTGGTCCGTGGCCA 59.817 50.000 0.00 0.00 0.00 5.36
126 127 0.879090 CTAACTTTTGGTCCGTGGCC 59.121 55.000 0.00 0.00 0.00 5.36
127 128 0.879090 CCTAACTTTTGGTCCGTGGC 59.121 55.000 0.00 0.00 0.00 5.01
128 129 2.554370 TCCTAACTTTTGGTCCGTGG 57.446 50.000 0.00 0.00 0.00 4.94
129 130 2.747446 CCATCCTAACTTTTGGTCCGTG 59.253 50.000 0.00 0.00 0.00 4.94
130 131 2.290705 CCCATCCTAACTTTTGGTCCGT 60.291 50.000 0.00 0.00 0.00 4.69
131 132 2.026636 TCCCATCCTAACTTTTGGTCCG 60.027 50.000 0.00 0.00 0.00 4.79
132 133 3.732048 TCCCATCCTAACTTTTGGTCC 57.268 47.619 0.00 0.00 0.00 4.46
133 134 5.127194 GGAATTCCCATCCTAACTTTTGGTC 59.873 44.000 14.03 0.00 33.98 4.02
134 135 5.023452 GGAATTCCCATCCTAACTTTTGGT 58.977 41.667 14.03 0.00 33.98 3.67
135 136 5.272402 AGGAATTCCCATCCTAACTTTTGG 58.728 41.667 21.22 0.00 45.51 3.28
136 137 6.437162 TGAAGGAATTCCCATCCTAACTTTTG 59.563 38.462 21.22 0.00 46.65 2.44
137 138 6.561294 TGAAGGAATTCCCATCCTAACTTTT 58.439 36.000 21.22 3.91 46.65 2.27
138 139 6.152638 TGAAGGAATTCCCATCCTAACTTT 57.847 37.500 21.22 4.45 46.65 2.66
139 140 5.796502 TGAAGGAATTCCCATCCTAACTT 57.203 39.130 21.22 5.21 46.65 2.66
140 141 5.796502 TTGAAGGAATTCCCATCCTAACT 57.203 39.130 21.22 0.00 46.65 2.24
141 142 6.210584 TGTTTTGAAGGAATTCCCATCCTAAC 59.789 38.462 21.22 21.06 46.65 2.34
142 143 6.318913 TGTTTTGAAGGAATTCCCATCCTAA 58.681 36.000 21.22 12.81 46.65 2.69
143 144 5.898120 TGTTTTGAAGGAATTCCCATCCTA 58.102 37.500 21.22 8.01 46.65 2.94
145 146 5.012046 ACTTGTTTTGAAGGAATTCCCATCC 59.988 40.000 21.22 8.28 37.41 3.51
146 147 6.101650 ACTTGTTTTGAAGGAATTCCCATC 57.898 37.500 21.22 18.86 37.41 3.51
147 148 6.499106 AACTTGTTTTGAAGGAATTCCCAT 57.501 33.333 21.22 10.53 37.41 4.00
148 149 5.948742 AACTTGTTTTGAAGGAATTCCCA 57.051 34.783 21.22 10.05 37.41 4.37
149 150 6.266786 TCCTAACTTGTTTTGAAGGAATTCCC 59.733 38.462 21.22 7.33 36.42 3.97
150 151 7.284919 TCCTAACTTGTTTTGAAGGAATTCC 57.715 36.000 17.31 17.31 30.34 3.01
151 152 7.814587 CCATCCTAACTTGTTTTGAAGGAATTC 59.185 37.037 0.00 0.00 36.75 2.17
152 153 7.256296 CCCATCCTAACTTGTTTTGAAGGAATT 60.256 37.037 6.78 0.00 36.75 2.17
153 154 6.211384 CCCATCCTAACTTGTTTTGAAGGAAT 59.789 38.462 6.78 0.00 36.75 3.01
154 155 5.538433 CCCATCCTAACTTGTTTTGAAGGAA 59.462 40.000 6.78 0.00 36.75 3.36
155 156 5.076873 CCCATCCTAACTTGTTTTGAAGGA 58.923 41.667 5.52 5.52 37.52 3.36
156 157 5.076873 TCCCATCCTAACTTGTTTTGAAGG 58.923 41.667 0.00 0.00 0.00 3.46
157 158 6.648879 TTCCCATCCTAACTTGTTTTGAAG 57.351 37.500 0.00 0.00 0.00 3.02
158 159 6.072175 CGATTCCCATCCTAACTTGTTTTGAA 60.072 38.462 0.00 0.00 0.00 2.69
159 160 5.414454 CGATTCCCATCCTAACTTGTTTTGA 59.586 40.000 0.00 0.00 0.00 2.69
160 161 5.393027 CCGATTCCCATCCTAACTTGTTTTG 60.393 44.000 0.00 0.00 0.00 2.44
161 162 4.705023 CCGATTCCCATCCTAACTTGTTTT 59.295 41.667 0.00 0.00 0.00 2.43
162 163 4.263771 ACCGATTCCCATCCTAACTTGTTT 60.264 41.667 0.00 0.00 0.00 2.83
163 164 3.265995 ACCGATTCCCATCCTAACTTGTT 59.734 43.478 0.00 0.00 0.00 2.83
164 165 2.844348 ACCGATTCCCATCCTAACTTGT 59.156 45.455 0.00 0.00 0.00 3.16
165 166 3.206150 CACCGATTCCCATCCTAACTTG 58.794 50.000 0.00 0.00 0.00 3.16
166 167 2.421529 GCACCGATTCCCATCCTAACTT 60.422 50.000 0.00 0.00 0.00 2.66
167 168 1.141053 GCACCGATTCCCATCCTAACT 59.859 52.381 0.00 0.00 0.00 2.24
168 169 1.134220 TGCACCGATTCCCATCCTAAC 60.134 52.381 0.00 0.00 0.00 2.34
169 170 1.208706 TGCACCGATTCCCATCCTAA 58.791 50.000 0.00 0.00 0.00 2.69
170 171 1.208706 TTGCACCGATTCCCATCCTA 58.791 50.000 0.00 0.00 0.00 2.94
171 172 0.331278 TTTGCACCGATTCCCATCCT 59.669 50.000 0.00 0.00 0.00 3.24
172 173 1.181786 TTTTGCACCGATTCCCATCC 58.818 50.000 0.00 0.00 0.00 3.51
173 174 4.647424 TTATTTTGCACCGATTCCCATC 57.353 40.909 0.00 0.00 0.00 3.51
174 175 4.466015 ACTTTATTTTGCACCGATTCCCAT 59.534 37.500 0.00 0.00 0.00 4.00
175 176 3.829601 ACTTTATTTTGCACCGATTCCCA 59.170 39.130 0.00 0.00 0.00 4.37
176 177 4.173256 CACTTTATTTTGCACCGATTCCC 58.827 43.478 0.00 0.00 0.00 3.97
177 178 4.621034 CACACTTTATTTTGCACCGATTCC 59.379 41.667 0.00 0.00 0.00 3.01
178 179 5.219633 ACACACTTTATTTTGCACCGATTC 58.780 37.500 0.00 0.00 0.00 2.52
179 180 5.195001 ACACACTTTATTTTGCACCGATT 57.805 34.783 0.00 0.00 0.00 3.34
180 181 4.846779 ACACACTTTATTTTGCACCGAT 57.153 36.364 0.00 0.00 0.00 4.18
181 182 4.640789 AACACACTTTATTTTGCACCGA 57.359 36.364 0.00 0.00 0.00 4.69
182 183 4.085822 CGAAACACACTTTATTTTGCACCG 60.086 41.667 0.00 0.00 0.00 4.94
183 184 5.038033 TCGAAACACACTTTATTTTGCACC 58.962 37.500 0.00 0.00 0.00 5.01
184 185 6.291585 CCTTCGAAACACACTTTATTTTGCAC 60.292 38.462 0.00 0.00 0.00 4.57
185 186 5.746245 CCTTCGAAACACACTTTATTTTGCA 59.254 36.000 0.00 0.00 0.00 4.08
186 187 5.174943 CCCTTCGAAACACACTTTATTTTGC 59.825 40.000 0.00 0.00 0.00 3.68
187 188 6.270064 ACCCTTCGAAACACACTTTATTTTG 58.730 36.000 0.00 0.00 0.00 2.44
188 189 6.459670 ACCCTTCGAAACACACTTTATTTT 57.540 33.333 0.00 0.00 0.00 1.82
189 190 6.320418 AGAACCCTTCGAAACACACTTTATTT 59.680 34.615 0.00 0.00 34.02 1.40
190 191 5.826208 AGAACCCTTCGAAACACACTTTATT 59.174 36.000 0.00 0.00 34.02 1.40
191 192 5.374071 AGAACCCTTCGAAACACACTTTAT 58.626 37.500 0.00 0.00 34.02 1.40
192 193 4.773013 AGAACCCTTCGAAACACACTTTA 58.227 39.130 0.00 0.00 34.02 1.85
193 194 3.617284 AGAACCCTTCGAAACACACTTT 58.383 40.909 0.00 0.00 34.02 2.66
194 195 3.277142 AGAACCCTTCGAAACACACTT 57.723 42.857 0.00 0.00 34.02 3.16
195 196 3.640029 TCTAGAACCCTTCGAAACACACT 59.360 43.478 0.00 0.00 34.02 3.55
196 197 3.986277 TCTAGAACCCTTCGAAACACAC 58.014 45.455 0.00 0.00 34.02 3.82
197 198 4.675976 TTCTAGAACCCTTCGAAACACA 57.324 40.909 0.00 0.00 34.02 3.72
198 199 5.526479 AGTTTTCTAGAACCCTTCGAAACAC 59.474 40.000 4.18 0.00 31.74 3.32
199 200 5.677567 AGTTTTCTAGAACCCTTCGAAACA 58.322 37.500 4.18 0.00 31.74 2.83
200 201 5.990386 AGAGTTTTCTAGAACCCTTCGAAAC 59.010 40.000 4.18 4.60 34.02 2.78
201 202 5.989777 CAGAGTTTTCTAGAACCCTTCGAAA 59.010 40.000 4.18 0.00 34.02 3.46
202 203 5.303589 TCAGAGTTTTCTAGAACCCTTCGAA 59.696 40.000 4.18 0.00 34.02 3.71
203 204 4.831155 TCAGAGTTTTCTAGAACCCTTCGA 59.169 41.667 4.18 2.51 34.02 3.71
204 205 5.047943 TCTCAGAGTTTTCTAGAACCCTTCG 60.048 44.000 4.18 0.32 34.02 3.79
205 206 6.347859 TCTCAGAGTTTTCTAGAACCCTTC 57.652 41.667 4.18 1.39 30.73 3.46
206 207 6.749036 TTCTCAGAGTTTTCTAGAACCCTT 57.251 37.500 4.18 0.00 30.73 3.95
207 208 6.749036 TTTCTCAGAGTTTTCTAGAACCCT 57.251 37.500 4.18 3.68 30.14 4.34
208 209 7.803279 TTTTTCTCAGAGTTTTCTAGAACCC 57.197 36.000 4.18 0.00 30.14 4.11
217 218 9.087424 GCACACTTTAATTTTTCTCAGAGTTTT 57.913 29.630 0.00 0.00 0.00 2.43
218 219 7.706607 GGCACACTTTAATTTTTCTCAGAGTTT 59.293 33.333 0.00 0.00 0.00 2.66
219 220 7.203218 GGCACACTTTAATTTTTCTCAGAGTT 58.797 34.615 0.00 0.00 0.00 3.01
220 221 6.513393 CGGCACACTTTAATTTTTCTCAGAGT 60.513 38.462 0.00 0.00 0.00 3.24
221 222 5.853282 CGGCACACTTTAATTTTTCTCAGAG 59.147 40.000 0.00 0.00 0.00 3.35
222 223 5.278266 CCGGCACACTTTAATTTTTCTCAGA 60.278 40.000 0.00 0.00 0.00 3.27
223 224 4.917415 CCGGCACACTTTAATTTTTCTCAG 59.083 41.667 0.00 0.00 0.00 3.35
224 225 4.580995 TCCGGCACACTTTAATTTTTCTCA 59.419 37.500 0.00 0.00 0.00 3.27
225 226 4.915667 GTCCGGCACACTTTAATTTTTCTC 59.084 41.667 0.00 0.00 0.00 2.87
226 227 4.555906 CGTCCGGCACACTTTAATTTTTCT 60.556 41.667 0.00 0.00 0.00 2.52
227 228 3.666797 CGTCCGGCACACTTTAATTTTTC 59.333 43.478 0.00 0.00 0.00 2.29
228 229 3.551250 CCGTCCGGCACACTTTAATTTTT 60.551 43.478 0.00 0.00 0.00 1.94
229 230 2.030628 CCGTCCGGCACACTTTAATTTT 60.031 45.455 0.00 0.00 0.00 1.82
230 231 1.538075 CCGTCCGGCACACTTTAATTT 59.462 47.619 0.00 0.00 0.00 1.82
231 232 1.161843 CCGTCCGGCACACTTTAATT 58.838 50.000 0.00 0.00 0.00 1.40
232 233 0.322322 TCCGTCCGGCACACTTTAAT 59.678 50.000 0.00 0.00 34.68 1.40
233 234 0.106335 TTCCGTCCGGCACACTTTAA 59.894 50.000 0.00 0.00 34.68 1.52
234 235 0.320073 CTTCCGTCCGGCACACTTTA 60.320 55.000 0.00 0.00 34.68 1.85
235 236 1.597027 CTTCCGTCCGGCACACTTT 60.597 57.895 0.00 0.00 34.68 2.66
236 237 1.827399 ATCTTCCGTCCGGCACACTT 61.827 55.000 0.00 0.00 34.68 3.16
237 238 2.283529 ATCTTCCGTCCGGCACACT 61.284 57.895 0.00 0.00 34.68 3.55
238 239 2.100631 CATCTTCCGTCCGGCACAC 61.101 63.158 0.00 0.00 34.68 3.82
239 240 2.264480 CATCTTCCGTCCGGCACA 59.736 61.111 0.00 0.00 34.68 4.57
240 241 3.195698 GCATCTTCCGTCCGGCAC 61.196 66.667 0.00 0.00 34.68 5.01
241 242 3.371097 GAGCATCTTCCGTCCGGCA 62.371 63.158 0.00 0.00 34.68 5.69
242 243 2.586357 GAGCATCTTCCGTCCGGC 60.586 66.667 0.00 0.00 34.68 6.13
243 244 2.107141 GGAGCATCTTCCGTCCGG 59.893 66.667 0.00 0.00 33.73 5.14
249 250 3.440173 TCAAATTTCACGGAGCATCTTCC 59.560 43.478 0.00 0.00 33.73 3.46
250 251 4.685169 TCAAATTTCACGGAGCATCTTC 57.315 40.909 0.00 0.00 33.73 2.87
251 252 5.452078 TTTCAAATTTCACGGAGCATCTT 57.548 34.783 0.00 0.00 33.73 2.40
252 253 5.649782 ATTTCAAATTTCACGGAGCATCT 57.350 34.783 0.00 0.00 33.73 2.90
253 254 6.452872 CGAAATTTCAAATTTCACGGAGCATC 60.453 38.462 27.46 5.41 37.76 3.91
254 255 5.345741 CGAAATTTCAAATTTCACGGAGCAT 59.654 36.000 27.46 0.00 37.76 3.79
255 256 4.679197 CGAAATTTCAAATTTCACGGAGCA 59.321 37.500 27.46 0.00 37.76 4.26
256 257 4.915085 TCGAAATTTCAAATTTCACGGAGC 59.085 37.500 27.46 7.12 37.76 4.70
257 258 5.569059 CCTCGAAATTTCAAATTTCACGGAG 59.431 40.000 27.46 23.90 37.76 4.63
258 259 5.009210 ACCTCGAAATTTCAAATTTCACGGA 59.991 36.000 29.33 20.34 37.76 4.69
259 260 5.219633 ACCTCGAAATTTCAAATTTCACGG 58.780 37.500 27.46 26.04 37.76 4.94
260 261 6.747659 AACCTCGAAATTTCAAATTTCACG 57.252 33.333 27.46 18.68 37.76 4.35
266 267 9.981114 ACTGAATTTAACCTCGAAATTTCAAAT 57.019 25.926 17.99 11.38 36.78 2.32
267 268 9.810545 AACTGAATTTAACCTCGAAATTTCAAA 57.189 25.926 17.99 9.71 36.78 2.69
268 269 9.810545 AAACTGAATTTAACCTCGAAATTTCAA 57.189 25.926 17.99 0.00 36.78 2.69
269 270 9.458374 GAAACTGAATTTAACCTCGAAATTTCA 57.542 29.630 17.99 4.84 36.78 2.69
270 271 9.458374 TGAAACTGAATTTAACCTCGAAATTTC 57.542 29.630 8.20 8.20 36.78 2.17
271 272 9.244799 GTGAAACTGAATTTAACCTCGAAATTT 57.755 29.630 0.00 0.00 36.78 1.82
272 273 8.410141 TGTGAAACTGAATTTAACCTCGAAATT 58.590 29.630 0.00 0.00 37.16 1.82
273 274 7.936584 TGTGAAACTGAATTTAACCTCGAAAT 58.063 30.769 0.00 0.00 38.04 2.17
274 275 7.323049 TGTGAAACTGAATTTAACCTCGAAA 57.677 32.000 0.00 0.00 38.04 3.46
275 276 6.928979 TGTGAAACTGAATTTAACCTCGAA 57.071 33.333 0.00 0.00 38.04 3.71
276 277 7.359595 CAATGTGAAACTGAATTTAACCTCGA 58.640 34.615 0.00 0.00 38.04 4.04
277 278 6.582295 CCAATGTGAAACTGAATTTAACCTCG 59.418 38.462 0.00 0.00 38.04 4.63
278 279 7.657336 TCCAATGTGAAACTGAATTTAACCTC 58.343 34.615 0.00 0.00 38.04 3.85
279 280 7.255942 CCTCCAATGTGAAACTGAATTTAACCT 60.256 37.037 0.00 0.00 38.04 3.50
280 281 6.868339 CCTCCAATGTGAAACTGAATTTAACC 59.132 38.462 0.00 0.00 38.04 2.85
281 282 7.433680 ACCTCCAATGTGAAACTGAATTTAAC 58.566 34.615 0.00 0.00 38.04 2.01
282 283 7.595819 ACCTCCAATGTGAAACTGAATTTAA 57.404 32.000 0.00 0.00 38.04 1.52
283 284 7.942341 AGTACCTCCAATGTGAAACTGAATTTA 59.058 33.333 0.00 0.00 38.04 1.40
284 285 6.777580 AGTACCTCCAATGTGAAACTGAATTT 59.222 34.615 0.00 0.00 38.04 1.82
285 286 6.306987 AGTACCTCCAATGTGAAACTGAATT 58.693 36.000 0.00 0.00 38.04 2.17
286 287 5.880901 AGTACCTCCAATGTGAAACTGAAT 58.119 37.500 0.00 0.00 38.04 2.57
287 288 5.304686 AGTACCTCCAATGTGAAACTGAA 57.695 39.130 0.00 0.00 38.04 3.02
288 289 4.974645 AGTACCTCCAATGTGAAACTGA 57.025 40.909 0.00 0.00 38.04 3.41
289 290 5.586243 CCATAGTACCTCCAATGTGAAACTG 59.414 44.000 0.00 0.00 38.04 3.16
290 291 5.487488 TCCATAGTACCTCCAATGTGAAACT 59.513 40.000 0.00 0.00 38.04 2.66
291 292 5.741011 TCCATAGTACCTCCAATGTGAAAC 58.259 41.667 0.00 0.00 37.35 2.78
292 293 6.214615 TCTTCCATAGTACCTCCAATGTGAAA 59.785 38.462 0.00 0.00 0.00 2.69
293 294 5.724370 TCTTCCATAGTACCTCCAATGTGAA 59.276 40.000 0.00 0.00 0.00 3.18
294 295 5.277250 TCTTCCATAGTACCTCCAATGTGA 58.723 41.667 0.00 0.00 0.00 3.58
295 296 5.614324 TCTTCCATAGTACCTCCAATGTG 57.386 43.478 0.00 0.00 0.00 3.21
296 297 5.395324 CGTTCTTCCATAGTACCTCCAATGT 60.395 44.000 0.00 0.00 0.00 2.71
297 298 5.050490 CGTTCTTCCATAGTACCTCCAATG 58.950 45.833 0.00 0.00 0.00 2.82
298 299 4.101119 CCGTTCTTCCATAGTACCTCCAAT 59.899 45.833 0.00 0.00 0.00 3.16
299 300 3.449737 CCGTTCTTCCATAGTACCTCCAA 59.550 47.826 0.00 0.00 0.00 3.53
300 301 3.028850 CCGTTCTTCCATAGTACCTCCA 58.971 50.000 0.00 0.00 0.00 3.86
301 302 3.067883 GTCCGTTCTTCCATAGTACCTCC 59.932 52.174 0.00 0.00 0.00 4.30
302 303 3.243002 CGTCCGTTCTTCCATAGTACCTC 60.243 52.174 0.00 0.00 0.00 3.85
303 304 2.686915 CGTCCGTTCTTCCATAGTACCT 59.313 50.000 0.00 0.00 0.00 3.08
304 305 2.424956 ACGTCCGTTCTTCCATAGTACC 59.575 50.000 0.00 0.00 0.00 3.34
305 306 3.772060 ACGTCCGTTCTTCCATAGTAC 57.228 47.619 0.00 0.00 0.00 2.73
313 314 7.359431 TACATATTTGTTGAACGTCCGTTCTTC 60.359 37.037 26.86 20.37 43.96 2.87
314 315 6.424509 TACATATTTGTTGAACGTCCGTTCTT 59.575 34.615 26.86 11.63 43.96 2.52
315 316 5.927689 TACATATTTGTTGAACGTCCGTTCT 59.072 36.000 26.86 12.66 43.96 3.01
316 317 6.155691 TACATATTTGTTGAACGTCCGTTC 57.844 37.500 22.05 22.05 43.93 3.95
317 318 5.121142 CCTACATATTTGTTGAACGTCCGTT 59.879 40.000 4.52 4.52 37.91 4.44
318 319 4.628333 CCTACATATTTGTTGAACGTCCGT 59.372 41.667 0.00 0.00 37.28 4.69
319 320 4.033587 CCCTACATATTTGTTGAACGTCCG 59.966 45.833 0.00 0.00 37.28 4.79
320 321 4.939439 ACCCTACATATTTGTTGAACGTCC 59.061 41.667 0.00 0.00 37.28 4.79
321 322 5.410439 ACACCCTACATATTTGTTGAACGTC 59.590 40.000 0.00 0.00 37.28 4.34
322 323 5.180492 CACACCCTACATATTTGTTGAACGT 59.820 40.000 0.00 0.00 37.28 3.99
323 324 5.180492 ACACACCCTACATATTTGTTGAACG 59.820 40.000 0.00 0.00 37.28 3.95
324 325 6.569179 ACACACCCTACATATTTGTTGAAC 57.431 37.500 0.00 0.00 37.28 3.18
325 326 7.429633 CAAACACACCCTACATATTTGTTGAA 58.570 34.615 0.00 0.00 37.28 2.69
326 327 6.015856 CCAAACACACCCTACATATTTGTTGA 60.016 38.462 0.00 0.00 37.28 3.18
327 328 6.155827 CCAAACACACCCTACATATTTGTTG 58.844 40.000 0.00 0.00 37.28 3.33
328 329 5.836358 ACCAAACACACCCTACATATTTGTT 59.164 36.000 0.00 0.00 37.28 2.83
329 330 5.390387 ACCAAACACACCCTACATATTTGT 58.610 37.500 0.00 0.00 39.98 2.83
330 331 5.975693 ACCAAACACACCCTACATATTTG 57.024 39.130 0.00 0.00 0.00 2.32
331 332 5.279256 GCAACCAAACACACCCTACATATTT 60.279 40.000 0.00 0.00 0.00 1.40
332 333 4.219725 GCAACCAAACACACCCTACATATT 59.780 41.667 0.00 0.00 0.00 1.28
333 334 3.761752 GCAACCAAACACACCCTACATAT 59.238 43.478 0.00 0.00 0.00 1.78
334 335 3.150767 GCAACCAAACACACCCTACATA 58.849 45.455 0.00 0.00 0.00 2.29
335 336 1.960689 GCAACCAAACACACCCTACAT 59.039 47.619 0.00 0.00 0.00 2.29
336 337 1.394618 GCAACCAAACACACCCTACA 58.605 50.000 0.00 0.00 0.00 2.74
337 338 0.671796 GGCAACCAAACACACCCTAC 59.328 55.000 0.00 0.00 0.00 3.18
338 339 3.119225 GGCAACCAAACACACCCTA 57.881 52.632 0.00 0.00 0.00 3.53
339 340 3.948702 GGCAACCAAACACACCCT 58.051 55.556 0.00 0.00 0.00 4.34
378 379 4.082523 CCTCTTCCTTCCCGCGCA 62.083 66.667 8.75 0.00 0.00 6.09
408 409 0.890683 GGCCCAACAGTGAAATCAGG 59.109 55.000 0.00 0.00 0.00 3.86
412 413 0.469705 TGCAGGCCCAACAGTGAAAT 60.470 50.000 0.00 0.00 0.00 2.17
413 414 0.469705 ATGCAGGCCCAACAGTGAAA 60.470 50.000 0.00 0.00 0.00 2.69
440 441 1.025647 GCTCTGGGCTGCTTTGAGAG 61.026 60.000 15.98 13.48 38.06 3.20
463 464 3.843240 CGAGCGTTTCCAGCGAGC 61.843 66.667 0.00 0.00 40.04 5.03
468 469 1.982073 GCCAATCCGAGCGTTTCCAG 61.982 60.000 0.00 0.00 0.00 3.86
484 485 2.738521 GCTCGCGAGAAACTGCCA 60.739 61.111 38.74 0.00 41.32 4.92
556 557 0.111253 ATTTCCATCTCCCGCCATCC 59.889 55.000 0.00 0.00 0.00 3.51
622 624 0.249489 GTAGTGGCTATGGGTGAGCG 60.249 60.000 0.00 0.00 41.06 5.03
648 650 2.544685 CTATGGGTGAGCGAGTGAAAG 58.455 52.381 0.00 0.00 0.00 2.62
649 651 1.405526 GCTATGGGTGAGCGAGTGAAA 60.406 52.381 0.00 0.00 0.00 2.69
650 652 0.175760 GCTATGGGTGAGCGAGTGAA 59.824 55.000 0.00 0.00 0.00 3.18
651 653 1.676678 GGCTATGGGTGAGCGAGTGA 61.677 60.000 0.00 0.00 41.06 3.41
652 654 1.227380 GGCTATGGGTGAGCGAGTG 60.227 63.158 0.00 0.00 41.06 3.51
653 655 1.685765 TGGCTATGGGTGAGCGAGT 60.686 57.895 0.00 0.00 41.06 4.18
654 656 1.227380 GTGGCTATGGGTGAGCGAG 60.227 63.158 0.00 0.00 41.06 5.03
655 657 0.396556 TAGTGGCTATGGGTGAGCGA 60.397 55.000 0.00 0.00 41.06 4.93
656 658 0.249489 GTAGTGGCTATGGGTGAGCG 60.249 60.000 0.00 0.00 41.06 5.03
657 659 0.106894 GGTAGTGGCTATGGGTGAGC 59.893 60.000 0.00 0.00 39.33 4.26
658 660 0.759346 GGGTAGTGGCTATGGGTGAG 59.241 60.000 0.00 0.00 0.00 3.51
659 661 0.693092 GGGGTAGTGGCTATGGGTGA 60.693 60.000 0.00 0.00 0.00 4.02
660 662 1.705997 GGGGGTAGTGGCTATGGGTG 61.706 65.000 0.00 0.00 0.00 4.61
661 663 1.385489 GGGGGTAGTGGCTATGGGT 60.385 63.158 0.00 0.00 0.00 4.51
662 664 3.576232 GGGGGTAGTGGCTATGGG 58.424 66.667 0.00 0.00 0.00 4.00
748 755 2.546795 CCTCTAGCGCGGATCTGAAATT 60.547 50.000 8.83 0.00 0.00 1.82
775 785 4.379243 CGCCTCTTCCACTGCCGT 62.379 66.667 0.00 0.00 0.00 5.68
941 959 2.167693 CGATCCTACACCTTGCCTAACA 59.832 50.000 0.00 0.00 0.00 2.41
1067 1085 1.462283 CAACTCTCTGGTGCATGAACG 59.538 52.381 0.00 0.00 0.00 3.95
1088 1106 1.374758 GGTCTCCCAGCACGACAAG 60.375 63.158 0.00 0.00 0.00 3.16
1114 1133 4.133820 CGGATAAACAATGGACCATAGCA 58.866 43.478 7.59 0.00 0.00 3.49
1154 1173 8.507249 GCAGTTGTAGATGTAGTTCAGATTTTT 58.493 33.333 0.00 0.00 0.00 1.94
1298 1319 0.482446 TGGAGGAACATGGCCACTTT 59.518 50.000 8.16 3.29 0.00 2.66
1767 1789 0.326927 TCCCCGAAATTTTCCTCGCT 59.673 50.000 3.61 0.00 33.70 4.93
1964 1986 4.724303 CTCGATCGAGTTCAGTTAACAGT 58.276 43.478 32.23 0.00 40.83 3.55
1978 2000 0.041224 CGAAGGAATCGCTCGATCGA 60.041 55.000 18.32 18.32 45.89 3.59
2062 2086 2.225017 ACCGGGAACTGTTCATCCAAAT 60.225 45.455 21.01 1.39 37.46 2.32
2085 2109 1.208165 GGGTCCTGTTCATCCACCCT 61.208 60.000 0.00 0.00 43.18 4.34
2219 2243 1.890894 CCCTCCACCGTCTACTGTG 59.109 63.158 0.00 0.00 0.00 3.66
2367 2391 2.040278 CCTCCTCCAGCCTCCACT 59.960 66.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.