Multiple sequence alignment - TraesCS2D01G105100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G105100 chr2D 100.000 7222 0 0 1 7222 56577761 56584982 0.000000e+00 13337.0
1 TraesCS2D01G105100 chr2D 93.016 315 19 2 5569 5880 620964816 620965130 2.370000e-124 457.0
2 TraesCS2D01G105100 chr2D 87.817 197 16 5 5346 5541 411781245 411781056 2.620000e-54 224.0
3 TraesCS2D01G105100 chr2D 91.837 49 1 3 4256 4304 341665898 341665853 1.680000e-06 65.8
4 TraesCS2D01G105100 chr2A 92.083 1920 102 24 4720 6627 58004044 58005925 0.000000e+00 2658.0
5 TraesCS2D01G105100 chr2A 84.615 1586 91 64 459 1958 58001015 58002533 0.000000e+00 1435.0
6 TraesCS2D01G105100 chr2A 96.159 729 28 0 3524 4252 58002928 58003656 0.000000e+00 1192.0
7 TraesCS2D01G105100 chr2A 91.086 359 24 5 4294 4647 58003667 58004022 5.070000e-131 479.0
8 TraesCS2D01G105100 chr2A 87.307 323 24 6 2029 2347 58002538 58002847 3.210000e-93 353.0
9 TraesCS2D01G105100 chr2A 78.111 434 35 25 2 402 58000491 58000897 3.390000e-53 220.0
10 TraesCS2D01G105100 chr2A 82.329 249 36 6 2444 2692 642583094 642582854 7.340000e-50 209.0
11 TraesCS2D01G105100 chr2A 73.761 545 117 20 3667 4195 679512279 679511745 2.660000e-44 191.0
12 TraesCS2D01G105100 chr2A 100.000 35 0 0 464 498 58000949 58000983 1.680000e-06 65.8
13 TraesCS2D01G105100 chr3D 97.527 1132 17 4 2395 3526 37281345 37280225 0.000000e+00 1925.0
14 TraesCS2D01G105100 chr3D 96.087 1150 23 4 2391 3534 487228434 487227301 0.000000e+00 1855.0
15 TraesCS2D01G105100 chr3D 89.036 985 73 15 2395 3373 613630833 613629878 0.000000e+00 1188.0
16 TraesCS2D01G105100 chr3D 90.588 340 28 4 5530 5869 434496329 434496664 1.430000e-121 448.0
17 TraesCS2D01G105100 chr3D 87.817 197 15 6 5346 5541 614020535 614020723 9.430000e-54 222.0
18 TraesCS2D01G105100 chr3D 88.961 154 16 1 3371 3523 487228277 487228430 9.560000e-44 189.0
19 TraesCS2D01G105100 chr2B 93.860 1140 65 4 3518 4655 89555636 89556772 0.000000e+00 1712.0
20 TraesCS2D01G105100 chr2B 92.688 1053 57 12 4720 5764 89556781 89557821 0.000000e+00 1500.0
21 TraesCS2D01G105100 chr2B 91.800 939 75 2 2395 3331 16768162 16767224 0.000000e+00 1306.0
22 TraesCS2D01G105100 chr2B 88.286 811 52 20 5791 6585 89557818 89558601 0.000000e+00 931.0
23 TraesCS2D01G105100 chr2B 90.287 628 32 5 6623 7222 166615092 166614466 0.000000e+00 795.0
24 TraesCS2D01G105100 chr2B 86.502 689 52 24 762 1420 89554107 89554784 0.000000e+00 719.0
25 TraesCS2D01G105100 chr2B 86.201 558 45 16 1463 2001 89554790 89555334 6.280000e-160 575.0
26 TraesCS2D01G105100 chr2B 91.968 249 9 10 526 768 89553899 89554142 8.970000e-89 339.0
27 TraesCS2D01G105100 chr2B 90.038 261 18 6 2128 2386 89555328 89555582 1.500000e-86 331.0
28 TraesCS2D01G105100 chr2B 73.857 547 116 19 3667 4195 638971061 638970524 7.390000e-45 193.0
29 TraesCS2D01G105100 chr2B 91.667 72 2 1 1777 1848 30391374 30391307 5.960000e-16 97.1
30 TraesCS2D01G105100 chr1A 91.141 982 75 9 2395 3373 554797435 554796463 0.000000e+00 1321.0
31 TraesCS2D01G105100 chr1A 95.652 46 0 2 4256 4301 327527092 327527049 1.010000e-08 73.1
32 TraesCS2D01G105100 chr1B 90.872 986 86 4 2390 3372 151836869 151835885 0.000000e+00 1319.0
33 TraesCS2D01G105100 chr1B 90.132 152 15 0 3372 3523 151835689 151835538 1.590000e-46 198.0
34 TraesCS2D01G105100 chr1B 91.667 72 2 1 1777 1848 149365302 149365369 5.960000e-16 97.1
35 TraesCS2D01G105100 chr1B 93.182 44 2 1 4253 4296 421421323 421421365 6.050000e-06 63.9
36 TraesCS2D01G105100 chr7B 89.036 985 79 9 2395 3373 530605528 530606489 0.000000e+00 1194.0
37 TraesCS2D01G105100 chr7B 89.677 155 15 1 3374 3527 530606624 530606778 5.720000e-46 196.0
38 TraesCS2D01G105100 chr7B 80.242 248 45 4 3764 4009 653019387 653019142 4.450000e-42 183.0
39 TraesCS2D01G105100 chr7B 89.286 56 2 4 4253 4307 718351054 718351106 4.680000e-07 67.6
40 TraesCS2D01G105100 chr6B 86.179 984 80 19 2395 3373 163449558 163450490 0.000000e+00 1013.0
41 TraesCS2D01G105100 chr6B 92.433 674 49 2 2420 3093 338237870 338238541 0.000000e+00 961.0
42 TraesCS2D01G105100 chr6B 90.895 626 30 3 6623 7221 685977367 685976742 0.000000e+00 815.0
43 TraesCS2D01G105100 chr6B 90.476 294 24 4 3081 3373 338239569 338239859 1.140000e-102 385.0
44 TraesCS2D01G105100 chr6B 82.400 250 39 5 3764 4010 173904709 173904956 5.680000e-51 213.0
45 TraesCS2D01G105100 chr6B 90.850 153 14 0 3371 3523 338240051 338240203 9.500000e-49 206.0
46 TraesCS2D01G105100 chr6B 90.260 154 15 0 3374 3527 163450626 163450779 1.230000e-47 202.0
47 TraesCS2D01G105100 chr7D 91.813 342 23 4 5540 5880 158429325 158429662 8.480000e-129 472.0
48 TraesCS2D01G105100 chr7D 91.254 343 23 6 5540 5880 366415715 366416052 1.840000e-125 460.0
49 TraesCS2D01G105100 chr7D 88.832 197 14 5 5346 5541 619000863 619000674 1.210000e-57 235.0
50 TraesCS2D01G105100 chr7D 88.325 197 15 5 5346 5541 366415461 366415650 5.640000e-56 230.0
51 TraesCS2D01G105100 chr7D 87.310 197 17 5 5346 5541 158429072 158429261 1.220000e-52 219.0
52 TraesCS2D01G105100 chr7D 82.283 254 41 4 3764 4015 92809889 92809638 4.390000e-52 217.0
53 TraesCS2D01G105100 chr1D 91.176 340 24 5 5530 5868 170103712 170104046 2.370000e-124 457.0
54 TraesCS2D01G105100 chr1D 88.832 197 14 5 5346 5541 170103468 170103657 1.210000e-57 235.0
55 TraesCS2D01G105100 chr1D 83.529 170 25 3 3361 3529 77797476 77797643 9.700000e-34 156.0
56 TraesCS2D01G105100 chr1D 91.837 49 3 1 4249 4297 114350917 114350964 4.680000e-07 67.6
57 TraesCS2D01G105100 chr5A 93.709 302 19 0 6921 7222 582892041 582892342 3.070000e-123 453.0
58 TraesCS2D01G105100 chr5A 94.118 68 3 1 6115 6181 324074068 324074135 1.280000e-17 102.0
59 TraesCS2D01G105100 chr5A 91.489 47 2 2 4253 4299 328804760 328804804 6.050000e-06 63.9
60 TraesCS2D01G105100 chr3A 89.831 354 28 6 5530 5880 381671799 381671451 1.430000e-121 448.0
61 TraesCS2D01G105100 chr3A 88.194 144 17 0 3380 3523 60834108 60834251 9.630000e-39 172.0
62 TraesCS2D01G105100 chr6D 90.145 345 26 7 5530 5872 430537891 430537553 6.650000e-120 442.0
63 TraesCS2D01G105100 chr4B 94.915 236 12 0 6981 7216 4556422 4556187 3.180000e-98 370.0
64 TraesCS2D01G105100 chr4B 79.924 264 39 6 1088 1346 371977537 371977283 1.600000e-41 182.0
65 TraesCS2D01G105100 chr4B 91.667 72 2 1 1777 1848 202907777 202907844 5.960000e-16 97.1
66 TraesCS2D01G105100 chr4B 91.667 72 2 1 1777 1848 366393132 366393065 5.960000e-16 97.1
67 TraesCS2D01G105100 chr4B 86.747 83 6 4 1782 1863 304770470 304770392 3.590000e-13 87.9
68 TraesCS2D01G105100 chr4D 84.615 377 17 18 1777 2134 54741205 54740851 3.230000e-88 337.0
69 TraesCS2D01G105100 chr4D 86.802 197 16 8 5346 5541 411043980 411044167 2.040000e-50 211.0
70 TraesCS2D01G105100 chr4D 80.309 259 35 8 1088 1340 299320863 299320615 1.600000e-41 182.0
71 TraesCS2D01G105100 chr7A 80.077 261 47 5 3764 4021 675230081 675230339 9.560000e-44 189.0
72 TraesCS2D01G105100 chr4A 79.771 262 37 8 1085 1340 185429782 185430033 7.450000e-40 176.0
73 TraesCS2D01G105100 chr4A 76.259 278 34 21 3037 3293 97303608 97303342 1.270000e-22 119.0
74 TraesCS2D01G105100 chr4A 86.364 88 7 4 1777 1863 674187221 674187304 2.770000e-14 91.6
75 TraesCS2D01G105100 chr5D 94.118 68 3 1 6115 6181 232138366 232138299 1.280000e-17 102.0
76 TraesCS2D01G105100 chr5D 88.889 54 2 4 4256 4308 549645479 549645429 6.050000e-06 63.9
77 TraesCS2D01G105100 chr5B 92.647 68 4 1 6115 6181 273139051 273139118 5.960000e-16 97.1
78 TraesCS2D01G105100 chr5B 92.727 55 4 0 3789 3843 246152418 246152364 6.010000e-11 80.5
79 TraesCS2D01G105100 chr3B 91.667 72 2 1 1777 1848 227577651 227577718 5.960000e-16 97.1
80 TraesCS2D01G105100 chr6A 91.667 48 3 1 4256 4303 159728939 159728893 1.680000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G105100 chr2D 56577761 56584982 7221 False 13337.000000 13337 100.000000 1 7222 1 chr2D.!!$F1 7221
1 TraesCS2D01G105100 chr2A 58000491 58005925 5434 False 914.685714 2658 89.908714 2 6627 7 chr2A.!!$F1 6625
2 TraesCS2D01G105100 chr3D 37280225 37281345 1120 True 1925.000000 1925 97.527000 2395 3526 1 chr3D.!!$R1 1131
3 TraesCS2D01G105100 chr3D 487227301 487228434 1133 True 1855.000000 1855 96.087000 2391 3534 1 chr3D.!!$R2 1143
4 TraesCS2D01G105100 chr3D 613629878 613630833 955 True 1188.000000 1188 89.036000 2395 3373 1 chr3D.!!$R3 978
5 TraesCS2D01G105100 chr2B 16767224 16768162 938 True 1306.000000 1306 91.800000 2395 3331 1 chr2B.!!$R1 936
6 TraesCS2D01G105100 chr2B 89553899 89558601 4702 False 872.428571 1712 89.934714 526 6585 7 chr2B.!!$F1 6059
7 TraesCS2D01G105100 chr2B 166614466 166615092 626 True 795.000000 795 90.287000 6623 7222 1 chr2B.!!$R3 599
8 TraesCS2D01G105100 chr1A 554796463 554797435 972 True 1321.000000 1321 91.141000 2395 3373 1 chr1A.!!$R2 978
9 TraesCS2D01G105100 chr1B 151835538 151836869 1331 True 758.500000 1319 90.502000 2390 3523 2 chr1B.!!$R1 1133
10 TraesCS2D01G105100 chr7B 530605528 530606778 1250 False 695.000000 1194 89.356500 2395 3527 2 chr7B.!!$F2 1132
11 TraesCS2D01G105100 chr6B 685976742 685977367 625 True 815.000000 815 90.895000 6623 7221 1 chr6B.!!$R1 598
12 TraesCS2D01G105100 chr6B 163449558 163450779 1221 False 607.500000 1013 88.219500 2395 3527 2 chr6B.!!$F2 1132
13 TraesCS2D01G105100 chr6B 338237870 338240203 2333 False 517.333333 961 91.253000 2420 3523 3 chr6B.!!$F3 1103
14 TraesCS2D01G105100 chr7D 158429072 158429662 590 False 345.500000 472 89.561500 5346 5880 2 chr7D.!!$F1 534
15 TraesCS2D01G105100 chr7D 366415461 366416052 591 False 345.000000 460 89.789500 5346 5880 2 chr7D.!!$F2 534
16 TraesCS2D01G105100 chr1D 170103468 170104046 578 False 346.000000 457 90.004000 5346 5868 2 chr1D.!!$F3 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 859 0.041833 CTCCCCCTTCCTCTCTCACA 59.958 60.000 0.00 0.00 0.00 3.58 F
889 1009 0.105709 CCCTCCTCTCTCTCTTCCCC 60.106 65.000 0.00 0.00 0.00 4.81 F
932 1052 0.108992 TGTTCGTACGTGCCTCCATC 60.109 55.000 16.05 0.00 0.00 3.51 F
1958 2164 0.463833 GTTGGATGGGGGCTCTTACG 60.464 60.000 0.00 0.00 0.00 3.18 F
1967 2173 0.531200 GGGCTCTTACGTGCTACTGT 59.469 55.000 0.00 0.00 0.00 3.55 F
2068 2274 0.674534 GTCTGTCCACCTCGAACTGT 59.325 55.000 0.00 0.00 0.00 3.55 F
2071 2277 1.068588 CTGTCCACCTCGAACTGTTCA 59.931 52.381 19.56 6.87 0.00 3.18 F
2081 2287 1.070577 CGAACTGTTCAGTTTCCTGCG 60.071 52.381 19.56 12.54 38.66 5.18 F
3772 5439 1.816863 GAACGTGCTCCTGGACTGGA 61.817 60.000 0.00 0.00 32.02 3.86 F
4624 6297 2.262915 GCGTCCACTCTCCCACTG 59.737 66.667 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2258 1.068588 CTGAACAGTTCGAGGTGGACA 59.931 52.381 8.80 0.99 0.00 4.02 R
2072 2278 1.336755 ACACCAAACATCGCAGGAAAC 59.663 47.619 0.00 0.00 0.00 2.78 R
2580 2793 1.597854 CAGGCCACACGCTCTTTCA 60.598 57.895 5.01 0.00 37.74 2.69 R
3772 5439 0.030603 GGGTGAGGGAGGGATTCTCT 60.031 60.000 0.00 0.00 40.18 3.10 R
3915 5582 3.116531 GGCGCGAACTGGGTGTAC 61.117 66.667 12.10 0.00 0.00 2.90 R
4110 5777 3.491652 GGCTTGCGGCTCTCGTTC 61.492 66.667 0.00 0.00 41.72 3.95 R
4241 5908 0.038251 TTACACCAGCGAGCAGAGTG 60.038 55.000 9.51 9.51 34.61 3.51 R
4282 5950 1.302907 TAGAGAGTACCCCCTCCGTT 58.697 55.000 0.00 0.00 31.53 4.44 R
4708 6386 0.321919 GGAAAAGTACCCCCACGGTC 60.322 60.000 0.00 0.00 43.58 4.79 R
6298 8097 0.029567 CCGACTGCTCTGACGATACC 59.970 60.000 0.00 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.951642 TCACCAAAGAGTGAGCTTTTGG 59.048 45.455 20.45 20.45 41.78 3.28
119 133 1.135517 GCGTGGTGTTTTGTGTTCAGT 60.136 47.619 0.00 0.00 0.00 3.41
121 135 2.418628 CGTGGTGTTTTGTGTTCAGTCT 59.581 45.455 0.00 0.00 0.00 3.24
134 148 4.024556 GTGTTCAGTCTGGTGTCATTTCTG 60.025 45.833 0.00 0.00 0.00 3.02
155 169 1.280206 AACTAACTCACCGCGAACGC 61.280 55.000 8.23 9.20 38.22 4.84
156 170 1.731613 CTAACTCACCGCGAACGCA 60.732 57.895 18.69 0.00 42.06 5.24
167 181 1.135315 CGAACGCAAAGCCCATGAG 59.865 57.895 0.00 0.00 0.00 2.90
169 183 1.098050 GAACGCAAAGCCCATGAGAT 58.902 50.000 0.00 0.00 0.00 2.75
186 213 5.786121 TGAGATTCCCTTCCAAGATTCTT 57.214 39.130 0.00 0.00 0.00 2.52
209 237 8.307483 TCTTAGAAACTCGAGATTGAAATCACT 58.693 33.333 21.68 7.55 37.89 3.41
214 242 7.962964 AACTCGAGATTGAAATCACTTGTAA 57.037 32.000 21.68 0.00 37.89 2.41
215 243 7.588143 ACTCGAGATTGAAATCACTTGTAAG 57.412 36.000 21.68 0.00 37.89 2.34
219 247 7.542477 TCGAGATTGAAATCACTTGTAAGACTC 59.458 37.037 5.86 0.00 37.89 3.36
220 248 7.543868 CGAGATTGAAATCACTTGTAAGACTCT 59.456 37.037 5.86 0.00 37.89 3.24
221 249 8.545229 AGATTGAAATCACTTGTAAGACTCTG 57.455 34.615 5.86 0.00 37.89 3.35
222 250 8.370940 AGATTGAAATCACTTGTAAGACTCTGA 58.629 33.333 5.86 0.00 37.89 3.27
223 251 7.715265 TTGAAATCACTTGTAAGACTCTGAC 57.285 36.000 0.00 0.00 0.00 3.51
224 252 6.816136 TGAAATCACTTGTAAGACTCTGACA 58.184 36.000 0.00 0.00 0.00 3.58
227 255 8.506168 AAATCACTTGTAAGACTCTGACAAAA 57.494 30.769 9.85 0.79 32.94 2.44
229 257 8.682936 ATCACTTGTAAGACTCTGACAAAATT 57.317 30.769 9.85 0.00 32.94 1.82
230 258 9.778741 ATCACTTGTAAGACTCTGACAAAATTA 57.221 29.630 9.85 0.00 32.94 1.40
231 259 9.778741 TCACTTGTAAGACTCTGACAAAATTAT 57.221 29.630 9.85 0.00 32.94 1.28
232 260 9.817365 CACTTGTAAGACTCTGACAAAATTATG 57.183 33.333 9.85 1.23 32.94 1.90
233 261 9.778741 ACTTGTAAGACTCTGACAAAATTATGA 57.221 29.630 9.85 0.00 32.94 2.15
235 263 8.239681 TGTAAGACTCTGACAAAATTATGACG 57.760 34.615 0.00 0.00 0.00 4.35
236 264 7.870954 TGTAAGACTCTGACAAAATTATGACGT 59.129 33.333 0.00 0.00 0.00 4.34
239 267 6.706270 AGACTCTGACAAAATTATGACGTGTT 59.294 34.615 0.00 0.00 0.00 3.32
240 268 7.870954 AGACTCTGACAAAATTATGACGTGTTA 59.129 33.333 0.00 0.00 0.00 2.41
242 270 8.443160 ACTCTGACAAAATTATGACGTGTTATG 58.557 33.333 0.00 0.00 0.00 1.90
243 271 7.240674 TCTGACAAAATTATGACGTGTTATGC 58.759 34.615 0.00 0.00 0.00 3.14
247 277 5.499139 AAATTATGACGTGTTATGCCCTG 57.501 39.130 0.00 0.00 0.00 4.45
252 282 3.215151 TGACGTGTTATGCCCTGAAAAA 58.785 40.909 0.00 0.00 0.00 1.94
254 284 3.482436 ACGTGTTATGCCCTGAAAAAGA 58.518 40.909 0.00 0.00 0.00 2.52
259 289 6.074356 CGTGTTATGCCCTGAAAAAGAAAAAG 60.074 38.462 0.00 0.00 0.00 2.27
268 298 7.275183 CCCTGAAAAAGAAAAAGGTTGAGAAT 58.725 34.615 0.00 0.00 0.00 2.40
275 305 5.776744 AGAAAAAGGTTGAGAATGATGTGC 58.223 37.500 0.00 0.00 0.00 4.57
276 306 5.537674 AGAAAAAGGTTGAGAATGATGTGCT 59.462 36.000 0.00 0.00 0.00 4.40
282 312 4.479619 GTTGAGAATGATGTGCTCCAAAC 58.520 43.478 0.00 0.00 0.00 2.93
283 313 3.753815 TGAGAATGATGTGCTCCAAACA 58.246 40.909 0.00 0.00 0.00 2.83
284 314 3.503363 TGAGAATGATGTGCTCCAAACAC 59.497 43.478 0.00 0.00 38.55 3.32
286 316 4.147321 AGAATGATGTGCTCCAAACACTT 58.853 39.130 0.00 0.00 38.86 3.16
288 318 2.653726 TGATGTGCTCCAAACACTTGT 58.346 42.857 0.00 0.00 38.86 3.16
289 319 2.618241 TGATGTGCTCCAAACACTTGTC 59.382 45.455 0.00 0.00 38.86 3.18
290 320 2.121291 TGTGCTCCAAACACTTGTCA 57.879 45.000 0.00 0.00 38.86 3.58
291 321 2.016318 TGTGCTCCAAACACTTGTCAG 58.984 47.619 0.00 0.00 38.86 3.51
302 332 3.735237 CACTTGTCAGTGGTAGTCTGT 57.265 47.619 0.00 0.00 46.10 3.41
303 333 4.848562 CACTTGTCAGTGGTAGTCTGTA 57.151 45.455 0.00 0.00 46.10 2.74
304 334 4.547532 CACTTGTCAGTGGTAGTCTGTAC 58.452 47.826 0.00 0.00 46.10 2.90
305 335 4.278669 CACTTGTCAGTGGTAGTCTGTACT 59.721 45.833 0.00 0.00 46.10 2.73
306 336 4.519730 ACTTGTCAGTGGTAGTCTGTACTC 59.480 45.833 0.00 0.00 37.15 2.59
307 337 4.368565 TGTCAGTGGTAGTCTGTACTCT 57.631 45.455 0.00 0.00 37.15 3.24
308 338 4.726583 TGTCAGTGGTAGTCTGTACTCTT 58.273 43.478 0.00 0.00 37.15 2.85
309 339 4.519350 TGTCAGTGGTAGTCTGTACTCTTG 59.481 45.833 0.00 0.00 37.15 3.02
310 340 4.079970 TCAGTGGTAGTCTGTACTCTTGG 58.920 47.826 0.00 0.00 37.15 3.61
311 341 3.193691 CAGTGGTAGTCTGTACTCTTGGG 59.806 52.174 0.00 0.00 37.15 4.12
312 342 2.094130 GTGGTAGTCTGTACTCTTGGGC 60.094 54.545 0.00 0.00 37.15 5.36
313 343 1.481363 GGTAGTCTGTACTCTTGGGCC 59.519 57.143 0.00 0.00 37.15 5.80
314 344 2.176889 GTAGTCTGTACTCTTGGGCCA 58.823 52.381 0.00 0.00 37.15 5.36
315 345 1.270907 AGTCTGTACTCTTGGGCCAG 58.729 55.000 6.23 0.96 0.00 4.85
316 346 1.203187 AGTCTGTACTCTTGGGCCAGA 60.203 52.381 6.23 5.91 0.00 3.86
317 347 1.623811 GTCTGTACTCTTGGGCCAGAA 59.376 52.381 6.23 0.00 34.24 3.02
318 348 2.038557 GTCTGTACTCTTGGGCCAGAAA 59.961 50.000 6.23 0.00 34.24 2.52
319 349 2.708861 TCTGTACTCTTGGGCCAGAAAA 59.291 45.455 6.23 0.00 0.00 2.29
320 350 2.814336 CTGTACTCTTGGGCCAGAAAAC 59.186 50.000 6.23 8.07 0.00 2.43
321 351 2.173782 TGTACTCTTGGGCCAGAAAACA 59.826 45.455 6.23 10.33 0.00 2.83
322 352 1.986882 ACTCTTGGGCCAGAAAACAG 58.013 50.000 6.23 0.00 0.00 3.16
323 353 0.600057 CTCTTGGGCCAGAAAACAGC 59.400 55.000 6.23 0.00 0.00 4.40
324 354 1.172180 TCTTGGGCCAGAAAACAGCG 61.172 55.000 6.23 0.00 0.00 5.18
325 355 2.753931 CTTGGGCCAGAAAACAGCGC 62.754 60.000 6.23 0.00 39.68 5.92
326 356 4.056125 GGGCCAGAAAACAGCGCC 62.056 66.667 4.39 0.00 38.96 6.53
344 374 3.859627 GCGCCTTTGTAGTCTCAGTTACA 60.860 47.826 0.00 0.00 0.00 2.41
388 421 3.259064 CACCGACTCGAACCATATTTGT 58.741 45.455 0.00 0.00 0.00 2.83
402 435 9.378551 GAACCATATTTGTTGTGTAGAGTCATA 57.621 33.333 0.00 0.00 0.00 2.15
403 436 9.733556 AACCATATTTGTTGTGTAGAGTCATAA 57.266 29.630 0.00 0.00 0.00 1.90
420 453 9.213777 AGAGTCATAATAATCCTAACAACTCCA 57.786 33.333 0.00 0.00 31.94 3.86
422 455 8.211629 AGTCATAATAATCCTAACAACTCCACC 58.788 37.037 0.00 0.00 0.00 4.61
423 456 8.211629 GTCATAATAATCCTAACAACTCCACCT 58.788 37.037 0.00 0.00 0.00 4.00
425 458 6.636454 AATAATCCTAACAACTCCACCTCA 57.364 37.500 0.00 0.00 0.00 3.86
427 460 1.975680 TCCTAACAACTCCACCTCACC 59.024 52.381 0.00 0.00 0.00 4.02
428 461 1.697432 CCTAACAACTCCACCTCACCA 59.303 52.381 0.00 0.00 0.00 4.17
430 463 0.179056 AACAACTCCACCTCACCACG 60.179 55.000 0.00 0.00 0.00 4.94
432 465 0.105964 CAACTCCACCTCACCACGAA 59.894 55.000 0.00 0.00 0.00 3.85
433 466 0.106149 AACTCCACCTCACCACGAAC 59.894 55.000 0.00 0.00 0.00 3.95
434 467 1.046472 ACTCCACCTCACCACGAACA 61.046 55.000 0.00 0.00 0.00 3.18
435 468 0.105964 CTCCACCTCACCACGAACAA 59.894 55.000 0.00 0.00 0.00 2.83
436 469 0.105964 TCCACCTCACCACGAACAAG 59.894 55.000 0.00 0.00 0.00 3.16
437 470 0.884704 CCACCTCACCACGAACAAGG 60.885 60.000 0.00 0.00 0.00 3.61
445 531 3.316868 TCACCACGAACAAGGAAAAATCC 59.683 43.478 0.00 0.00 0.00 3.01
455 541 1.604147 GGAAAAATCCACCTGCCCGG 61.604 60.000 0.00 0.00 39.35 5.73
509 603 0.519077 GCTAGCTCCACACACAAAGC 59.481 55.000 7.70 0.00 34.95 3.51
512 606 2.908073 GCTCCACACACAAAGCCGG 61.908 63.158 0.00 0.00 0.00 6.13
531 646 2.562912 CGGAAGCCACACATGCAC 59.437 61.111 0.00 0.00 0.00 4.57
532 647 2.562912 GGAAGCCACACATGCACG 59.437 61.111 0.00 0.00 0.00 5.34
649 769 2.024022 CACGGCCACAAACACACG 59.976 61.111 2.24 0.00 0.00 4.49
737 857 1.706575 CCTCCCCCTTCCTCTCTCA 59.293 63.158 0.00 0.00 0.00 3.27
738 858 0.689412 CCTCCCCCTTCCTCTCTCAC 60.689 65.000 0.00 0.00 0.00 3.51
739 859 0.041833 CTCCCCCTTCCTCTCTCACA 59.958 60.000 0.00 0.00 0.00 3.58
740 860 0.719015 TCCCCCTTCCTCTCTCACAT 59.281 55.000 0.00 0.00 0.00 3.21
741 861 1.127343 CCCCCTTCCTCTCTCACATC 58.873 60.000 0.00 0.00 0.00 3.06
742 862 1.343884 CCCCCTTCCTCTCTCACATCT 60.344 57.143 0.00 0.00 0.00 2.90
743 863 2.038659 CCCCTTCCTCTCTCACATCTC 58.961 57.143 0.00 0.00 0.00 2.75
744 864 2.359143 CCCCTTCCTCTCTCACATCTCT 60.359 54.545 0.00 0.00 0.00 3.10
745 865 2.958355 CCCTTCCTCTCTCACATCTCTC 59.042 54.545 0.00 0.00 0.00 3.20
746 866 3.373001 CCCTTCCTCTCTCACATCTCTCT 60.373 52.174 0.00 0.00 0.00 3.10
747 867 3.885297 CCTTCCTCTCTCACATCTCTCTC 59.115 52.174 0.00 0.00 0.00 3.20
748 868 4.385643 CCTTCCTCTCTCACATCTCTCTCT 60.386 50.000 0.00 0.00 0.00 3.10
749 869 4.422073 TCCTCTCTCACATCTCTCTCTC 57.578 50.000 0.00 0.00 0.00 3.20
750 870 4.040047 TCCTCTCTCACATCTCTCTCTCT 58.960 47.826 0.00 0.00 0.00 3.10
751 871 4.101585 TCCTCTCTCACATCTCTCTCTCTC 59.898 50.000 0.00 0.00 0.00 3.20
881 1001 2.363147 ACGCCACCCTCCTCTCTC 60.363 66.667 0.00 0.00 0.00 3.20
882 1002 2.043450 CGCCACCCTCCTCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
884 1004 1.309688 GCCACCCTCCTCTCTCTCT 59.690 63.158 0.00 0.00 0.00 3.10
885 1005 0.325203 GCCACCCTCCTCTCTCTCTT 60.325 60.000 0.00 0.00 0.00 2.85
886 1006 1.775385 CCACCCTCCTCTCTCTCTTC 58.225 60.000 0.00 0.00 0.00 2.87
887 1007 1.687996 CCACCCTCCTCTCTCTCTTCC 60.688 61.905 0.00 0.00 0.00 3.46
888 1008 0.634465 ACCCTCCTCTCTCTCTTCCC 59.366 60.000 0.00 0.00 0.00 3.97
889 1009 0.105709 CCCTCCTCTCTCTCTTCCCC 60.106 65.000 0.00 0.00 0.00 4.81
890 1010 0.467290 CCTCCTCTCTCTCTTCCCCG 60.467 65.000 0.00 0.00 0.00 5.73
891 1011 0.548989 CTCCTCTCTCTCTTCCCCGA 59.451 60.000 0.00 0.00 0.00 5.14
892 1012 0.548989 TCCTCTCTCTCTTCCCCGAG 59.451 60.000 0.00 0.00 0.00 4.63
914 1034 3.093566 GATCCGTCCATCGATCGTG 57.906 57.895 15.94 12.28 42.86 4.35
915 1035 0.311165 GATCCGTCCATCGATCGTGT 59.689 55.000 15.94 2.26 42.86 4.49
919 1039 0.522705 CGTCCATCGATCGTGTTCGT 60.523 55.000 15.94 0.00 42.86 3.85
920 1040 1.267682 CGTCCATCGATCGTGTTCGTA 60.268 52.381 15.94 0.00 42.86 3.43
922 1042 1.110085 CCATCGATCGTGTTCGTACG 58.890 55.000 15.94 9.53 44.98 3.67
923 1043 1.530441 CCATCGATCGTGTTCGTACGT 60.530 52.381 15.94 0.00 44.06 3.57
924 1044 1.507520 CATCGATCGTGTTCGTACGTG 59.492 52.381 15.94 0.00 44.06 4.49
925 1045 0.790495 TCGATCGTGTTCGTACGTGC 60.790 55.000 15.94 9.79 44.06 5.34
926 1046 1.726845 CGATCGTGTTCGTACGTGCC 61.727 60.000 16.05 4.97 44.06 5.01
927 1047 0.455633 GATCGTGTTCGTACGTGCCT 60.456 55.000 16.05 0.00 44.06 4.75
928 1048 0.455633 ATCGTGTTCGTACGTGCCTC 60.456 55.000 16.05 4.65 44.06 4.70
930 1050 1.007038 GTGTTCGTACGTGCCTCCA 60.007 57.895 16.05 1.58 0.00 3.86
931 1051 0.389426 GTGTTCGTACGTGCCTCCAT 60.389 55.000 16.05 0.00 0.00 3.41
932 1052 0.108992 TGTTCGTACGTGCCTCCATC 60.109 55.000 16.05 0.00 0.00 3.51
933 1053 0.804933 GTTCGTACGTGCCTCCATCC 60.805 60.000 16.05 0.00 0.00 3.51
934 1054 2.274232 TTCGTACGTGCCTCCATCCG 62.274 60.000 16.05 0.00 0.00 4.18
935 1055 2.890371 GTACGTGCCTCCATCCGT 59.110 61.111 0.00 0.00 37.33 4.69
936 1056 1.226888 GTACGTGCCTCCATCCGTC 60.227 63.158 0.00 0.00 34.95 4.79
937 1057 2.420568 TACGTGCCTCCATCCGTCC 61.421 63.158 0.00 0.00 34.95 4.79
938 1058 4.873129 CGTGCCTCCATCCGTCCG 62.873 72.222 0.00 0.00 0.00 4.79
939 1059 3.771160 GTGCCTCCATCCGTCCGT 61.771 66.667 0.00 0.00 0.00 4.69
940 1060 3.458163 TGCCTCCATCCGTCCGTC 61.458 66.667 0.00 0.00 0.00 4.79
941 1061 4.222847 GCCTCCATCCGTCCGTCC 62.223 72.222 0.00 0.00 0.00 4.79
942 1062 2.442272 CCTCCATCCGTCCGTCCT 60.442 66.667 0.00 0.00 0.00 3.85
943 1063 2.491022 CCTCCATCCGTCCGTCCTC 61.491 68.421 0.00 0.00 0.00 3.71
944 1064 1.454111 CTCCATCCGTCCGTCCTCT 60.454 63.158 0.00 0.00 0.00 3.69
945 1065 1.448922 CTCCATCCGTCCGTCCTCTC 61.449 65.000 0.00 0.00 0.00 3.20
946 1066 2.491022 CCATCCGTCCGTCCTCTCC 61.491 68.421 0.00 0.00 0.00 3.71
947 1067 1.753078 CATCCGTCCGTCCTCTCCA 60.753 63.158 0.00 0.00 0.00 3.86
948 1068 1.000019 ATCCGTCCGTCCTCTCCAA 60.000 57.895 0.00 0.00 0.00 3.53
955 1075 1.444553 CGTCCTCTCCAACTCGTGC 60.445 63.158 0.00 0.00 0.00 5.34
971 1110 1.743995 TGCTCGATCGTCGTGGAGA 60.744 57.895 15.94 0.00 41.35 3.71
976 1115 0.938008 CGATCGTCGTGGAGAGATCA 59.062 55.000 7.03 0.00 39.39 2.92
979 1118 1.064946 CGTCGTGGAGAGATCAGGC 59.935 63.158 0.00 0.00 0.00 4.85
1065 1204 2.456948 GCCGCCGCTTCTTCTTCTC 61.457 63.158 0.00 0.00 0.00 2.87
1077 1216 3.487372 TCTTCTTCTCCTTCTCGTGTCA 58.513 45.455 0.00 0.00 0.00 3.58
1081 1220 1.982660 TCTCCTTCTCGTGTCAGTGT 58.017 50.000 0.00 0.00 0.00 3.55
1343 1500 3.403968 GCGGAGGTTTCTTTTCTTCTCT 58.596 45.455 0.00 0.00 0.00 3.10
1355 1512 7.426929 TCTTTTCTTCTCTTTCTTCATTCCG 57.573 36.000 0.00 0.00 0.00 4.30
1367 1535 2.704725 TCATTCCGCTTTGCACTTTC 57.295 45.000 0.00 0.00 0.00 2.62
1389 1557 1.339610 GAGGTCAGATCGATCCTGTGG 59.660 57.143 21.66 6.99 33.57 4.17
1391 1559 2.091830 AGGTCAGATCGATCCTGTGGTA 60.092 50.000 21.66 1.67 33.57 3.25
1408 1577 0.803740 GTAATTTAACCGGCGGTGCA 59.196 50.000 34.87 21.14 35.34 4.57
1420 1589 3.276846 GGTGCACGTGCGTTTCCT 61.277 61.111 33.22 0.00 45.83 3.36
1423 1597 1.063327 TGCACGTGCGTTTCCTTTG 59.937 52.632 33.22 0.00 45.83 2.77
1448 1622 3.028850 TGTCCTACTAGCAATTACGGCT 58.971 45.455 0.00 0.00 45.18 5.52
1450 1624 2.135933 CCTACTAGCAATTACGGCTGC 58.864 52.381 0.00 0.00 42.62 5.25
1460 1634 3.702529 TACGGCTGCCTGCATGCAT 62.703 57.895 22.97 6.08 45.15 3.96
1461 1635 2.322638 TACGGCTGCCTGCATGCATA 62.323 55.000 22.97 9.95 45.15 3.14
1479 1653 7.382218 GCATGCATAAATGGTTTAATACACCTC 59.618 37.037 14.21 0.00 35.07 3.85
1482 1656 7.284489 TGCATAAATGGTTTAATACACCTCCTC 59.716 37.037 0.00 0.00 35.07 3.71
1502 1676 5.103473 TCCTCTCTCATTCTCCCTAGCTAAA 60.103 44.000 0.00 0.00 0.00 1.85
1503 1677 5.779771 CCTCTCTCATTCTCCCTAGCTAAAT 59.220 44.000 0.00 0.00 0.00 1.40
1506 1680 6.613271 TCTCTCATTCTCCCTAGCTAAATGTT 59.387 38.462 12.57 0.00 0.00 2.71
1507 1681 7.785028 TCTCTCATTCTCCCTAGCTAAATGTTA 59.215 37.037 12.57 4.52 0.00 2.41
1512 1695 9.566432 CATTCTCCCTAGCTAAATGTTAAAGAT 57.434 33.333 6.85 0.00 0.00 2.40
1526 1709 9.458374 AAATGTTAAAGATTCCACACGTTTTAG 57.542 29.630 0.00 0.00 0.00 1.85
1532 1715 5.556915 AGATTCCACACGTTTTAGAATGGA 58.443 37.500 4.99 0.00 34.44 3.41
1536 1719 5.357314 TTCCACACGTTTTAGAATGGAAACA 59.643 36.000 1.08 0.00 41.93 2.83
1560 1744 4.023291 GCAATAGGATTTGGACCTTGGAA 58.977 43.478 0.00 0.00 38.76 3.53
1585 1769 8.854614 AAATATGGTTATCTATGGCTTCTGTC 57.145 34.615 0.00 0.00 0.00 3.51
1586 1770 7.805083 ATATGGTTATCTATGGCTTCTGTCT 57.195 36.000 0.00 0.00 0.00 3.41
1635 1819 5.582665 GGATACAGTCTTGGTCATGTTCTTC 59.417 44.000 0.00 0.00 0.00 2.87
1709 1897 8.167605 TCCCGCATAAGAAGCTATCTATATAC 57.832 38.462 0.00 0.00 37.42 1.47
1743 1931 4.706962 AGAAATGGGTTTCAGATGGTTAGC 59.293 41.667 4.01 0.00 44.92 3.09
1806 1995 4.263018 AGTTTGGTCCTACGTACTTTCC 57.737 45.455 0.00 0.00 0.00 3.13
1810 1999 6.212187 AGTTTGGTCCTACGTACTTTCCTAAT 59.788 38.462 0.00 0.00 0.00 1.73
1811 2000 5.841957 TGGTCCTACGTACTTTCCTAATC 57.158 43.478 0.00 0.00 0.00 1.75
1849 2038 3.181451 TGCTCATGTTCTTTGAGTGGACT 60.181 43.478 0.00 0.00 42.12 3.85
1894 2096 3.639561 TGTGTTCAGTTAGGTACTCAGCA 59.360 43.478 0.00 0.00 41.75 4.41
1958 2164 0.463833 GTTGGATGGGGGCTCTTACG 60.464 60.000 0.00 0.00 0.00 3.18
1959 2165 0.912487 TTGGATGGGGGCTCTTACGT 60.912 55.000 0.00 0.00 0.00 3.57
1960 2166 1.146263 GGATGGGGGCTCTTACGTG 59.854 63.158 0.00 0.00 0.00 4.49
1961 2167 1.523938 GATGGGGGCTCTTACGTGC 60.524 63.158 0.00 0.00 0.00 5.34
1962 2168 1.972660 GATGGGGGCTCTTACGTGCT 61.973 60.000 0.00 0.00 0.00 4.40
1963 2169 0.689745 ATGGGGGCTCTTACGTGCTA 60.690 55.000 0.00 0.00 0.00 3.49
1964 2170 1.143401 GGGGGCTCTTACGTGCTAC 59.857 63.158 0.00 0.00 0.00 3.58
1965 2171 1.328430 GGGGGCTCTTACGTGCTACT 61.328 60.000 0.00 0.00 0.00 2.57
1967 2173 0.531200 GGGCTCTTACGTGCTACTGT 59.469 55.000 0.00 0.00 0.00 3.55
1969 2175 1.993370 GGCTCTTACGTGCTACTGTTG 59.007 52.381 0.00 0.00 0.00 3.33
1970 2176 1.993370 GCTCTTACGTGCTACTGTTGG 59.007 52.381 0.00 0.00 0.00 3.77
1971 2177 2.607187 CTCTTACGTGCTACTGTTGGG 58.393 52.381 0.00 0.00 0.00 4.12
1972 2178 1.965643 TCTTACGTGCTACTGTTGGGT 59.034 47.619 0.00 0.00 0.00 4.51
1973 2179 2.366266 TCTTACGTGCTACTGTTGGGTT 59.634 45.455 0.00 0.00 0.00 4.11
1974 2180 2.443887 TACGTGCTACTGTTGGGTTC 57.556 50.000 0.00 0.00 0.00 3.62
1991 2197 5.374921 TGGGTTCGTTAACACCTTTATCAA 58.625 37.500 13.24 0.00 38.31 2.57
1992 2198 5.239087 TGGGTTCGTTAACACCTTTATCAAC 59.761 40.000 13.24 0.00 38.31 3.18
1993 2199 5.471116 GGGTTCGTTAACACCTTTATCAACT 59.529 40.000 13.24 0.00 37.34 3.16
1994 2200 6.347969 GGGTTCGTTAACACCTTTATCAACTC 60.348 42.308 13.24 0.00 37.34 3.01
1995 2201 6.426025 GGTTCGTTAACACCTTTATCAACTCT 59.574 38.462 6.39 0.00 37.34 3.24
1996 2202 7.288672 GTTCGTTAACACCTTTATCAACTCTG 58.711 38.462 6.39 0.00 35.56 3.35
1997 2203 5.407387 TCGTTAACACCTTTATCAACTCTGC 59.593 40.000 6.39 0.00 0.00 4.26
1998 2204 5.408604 CGTTAACACCTTTATCAACTCTGCT 59.591 40.000 6.39 0.00 0.00 4.24
1999 2205 6.073222 CGTTAACACCTTTATCAACTCTGCTT 60.073 38.462 6.39 0.00 0.00 3.91
2000 2206 5.695851 AACACCTTTATCAACTCTGCTTG 57.304 39.130 0.00 0.00 0.00 4.01
2001 2207 4.973168 ACACCTTTATCAACTCTGCTTGA 58.027 39.130 0.00 0.00 34.65 3.02
2017 2223 8.071122 CTCTGCTTGAGTCTAGTTATTATTGC 57.929 38.462 3.52 0.00 37.99 3.56
2018 2224 6.697455 TCTGCTTGAGTCTAGTTATTATTGCG 59.303 38.462 3.52 0.00 0.00 4.85
2019 2225 5.234329 TGCTTGAGTCTAGTTATTATTGCGC 59.766 40.000 0.00 0.00 0.00 6.09
2020 2226 5.463724 GCTTGAGTCTAGTTATTATTGCGCT 59.536 40.000 9.73 0.00 0.00 5.92
2021 2227 6.641314 GCTTGAGTCTAGTTATTATTGCGCTA 59.359 38.462 9.73 0.00 0.00 4.26
2022 2228 7.329717 GCTTGAGTCTAGTTATTATTGCGCTAT 59.670 37.037 9.73 9.73 0.00 2.97
2023 2229 9.841880 CTTGAGTCTAGTTATTATTGCGCTATA 57.158 33.333 9.73 8.47 0.00 1.31
2024 2230 9.841880 TTGAGTCTAGTTATTATTGCGCTATAG 57.158 33.333 9.73 0.00 0.00 1.31
2025 2231 9.011095 TGAGTCTAGTTATTATTGCGCTATAGT 57.989 33.333 9.73 10.62 0.00 2.12
2026 2232 9.493206 GAGTCTAGTTATTATTGCGCTATAGTC 57.507 37.037 9.73 3.19 0.00 2.59
2027 2233 9.011095 AGTCTAGTTATTATTGCGCTATAGTCA 57.989 33.333 9.73 0.00 0.00 3.41
2050 2256 5.765182 CAGTCAAGGGACAGAACTAATTTGT 59.235 40.000 0.00 0.00 46.80 2.83
2052 2258 5.998363 GTCAAGGGACAGAACTAATTTGTCT 59.002 40.000 7.06 0.00 43.73 3.41
2068 2274 0.674534 GTCTGTCCACCTCGAACTGT 59.325 55.000 0.00 0.00 0.00 3.55
2069 2275 1.068741 GTCTGTCCACCTCGAACTGTT 59.931 52.381 0.00 0.00 0.00 3.16
2070 2276 1.340248 TCTGTCCACCTCGAACTGTTC 59.660 52.381 10.48 10.48 0.00 3.18
2071 2277 1.068588 CTGTCCACCTCGAACTGTTCA 59.931 52.381 19.56 6.87 0.00 3.18
2072 2278 1.068588 TGTCCACCTCGAACTGTTCAG 59.931 52.381 19.56 14.64 0.00 3.02
2081 2287 1.070577 CGAACTGTTCAGTTTCCTGCG 60.071 52.381 19.56 12.54 38.66 5.18
2086 2292 2.549754 CTGTTCAGTTTCCTGCGATGTT 59.450 45.455 0.00 0.00 38.66 2.71
2097 2303 2.095853 CCTGCGATGTTTGGTGTCATAC 59.904 50.000 0.00 0.00 0.00 2.39
2121 2327 2.440409 TGCCTCTCTTCAGAAAATGCC 58.560 47.619 0.00 0.00 0.00 4.40
2143 2349 6.183360 TGCCTTTCCCTATCTTGCAATAAATG 60.183 38.462 0.00 0.00 0.00 2.32
2146 2352 7.255730 CCTTTCCCTATCTTGCAATAAATGAGG 60.256 40.741 0.00 1.46 0.00 3.86
2156 2362 8.030692 TCTTGCAATAAATGAGGAATTCACTTG 58.969 33.333 7.93 2.95 38.99 3.16
2161 2367 9.350357 CAATAAATGAGGAATTCACTTGAGTTG 57.650 33.333 7.93 0.13 38.99 3.16
2166 2372 4.780815 AGGAATTCACTTGAGTTGTGTCA 58.219 39.130 7.93 0.00 36.83 3.58
2167 2373 4.576463 AGGAATTCACTTGAGTTGTGTCAC 59.424 41.667 7.93 0.00 36.83 3.67
2219 2427 6.441088 AAAGAAGGAAATCTCTACCACAGT 57.559 37.500 0.00 0.00 0.00 3.55
2232 2443 4.893524 TCTACCACAGTACCATCACCATAG 59.106 45.833 0.00 0.00 0.00 2.23
2354 2565 9.799106 CATTATCTTCCTGTCTTATTTGGGTAT 57.201 33.333 0.00 0.00 0.00 2.73
2580 2793 3.093057 CTGTCAGTGGCTAGACTAAGGT 58.907 50.000 0.00 0.00 35.81 3.50
3579 5246 3.195698 GGATGGAACGCGCAGACC 61.196 66.667 5.73 7.54 0.00 3.85
3772 5439 1.816863 GAACGTGCTCCTGGACTGGA 61.817 60.000 0.00 0.00 32.02 3.86
4107 5774 7.929659 GATCCAGATCTGCCTCTTCAAGGTG 62.930 52.000 17.76 0.00 39.83 4.00
4241 5908 2.331451 GCTTGGTGCGTGTGGTTC 59.669 61.111 0.00 0.00 0.00 3.62
4291 5959 4.781087 TCTTATATTATGGGAACGGAGGGG 59.219 45.833 0.00 0.00 0.00 4.79
4354 6022 5.340439 TTTGTTTATGTGTCCGGGTTTTT 57.660 34.783 0.00 0.00 0.00 1.94
4471 6139 6.476380 GCTCAAGTGAGTCTCTTGATGATAAG 59.524 42.308 28.64 19.88 46.30 1.73
4478 6146 8.140628 GTGAGTCTCTTGATGATAAGCTCATAA 58.859 37.037 0.65 0.00 44.83 1.90
4479 6147 8.358895 TGAGTCTCTTGATGATAAGCTCATAAG 58.641 37.037 0.65 0.00 44.83 1.73
4480 6148 7.153985 AGTCTCTTGATGATAAGCTCATAAGC 58.846 38.462 0.00 0.00 44.83 3.09
4513 6186 4.159693 ACATTCGTTGGTAGCAGACTGATA 59.840 41.667 6.65 0.22 0.00 2.15
4518 6191 6.869695 TCGTTGGTAGCAGACTGATATTTAA 58.130 36.000 6.65 0.00 0.00 1.52
4624 6297 2.262915 GCGTCCACTCTCCCACTG 59.737 66.667 0.00 0.00 0.00 3.66
4625 6298 2.262915 CGTCCACTCTCCCACTGC 59.737 66.667 0.00 0.00 0.00 4.40
4663 6341 7.873739 GCTCAATGCTGTTTATGTTTTACTT 57.126 32.000 0.00 0.00 38.95 2.24
4664 6342 7.942908 GCTCAATGCTGTTTATGTTTTACTTC 58.057 34.615 0.00 0.00 38.95 3.01
4665 6343 7.062255 GCTCAATGCTGTTTATGTTTTACTTCC 59.938 37.037 0.00 0.00 38.95 3.46
4666 6344 8.177119 TCAATGCTGTTTATGTTTTACTTCCT 57.823 30.769 0.00 0.00 0.00 3.36
4667 6345 8.296713 TCAATGCTGTTTATGTTTTACTTCCTC 58.703 33.333 0.00 0.00 0.00 3.71
4668 6346 8.299570 CAATGCTGTTTATGTTTTACTTCCTCT 58.700 33.333 0.00 0.00 0.00 3.69
4669 6347 7.202016 TGCTGTTTATGTTTTACTTCCTCTG 57.798 36.000 0.00 0.00 0.00 3.35
4670 6348 6.770785 TGCTGTTTATGTTTTACTTCCTCTGT 59.229 34.615 0.00 0.00 0.00 3.41
4671 6349 7.041372 TGCTGTTTATGTTTTACTTCCTCTGTC 60.041 37.037 0.00 0.00 0.00 3.51
4672 6350 7.173390 GCTGTTTATGTTTTACTTCCTCTGTCT 59.827 37.037 0.00 0.00 0.00 3.41
4673 6351 8.603242 TGTTTATGTTTTACTTCCTCTGTCTC 57.397 34.615 0.00 0.00 0.00 3.36
4674 6352 8.208224 TGTTTATGTTTTACTTCCTCTGTCTCA 58.792 33.333 0.00 0.00 0.00 3.27
4675 6353 9.220767 GTTTATGTTTTACTTCCTCTGTCTCAT 57.779 33.333 0.00 0.00 0.00 2.90
4677 6355 9.871238 TTATGTTTTACTTCCTCTGTCTCATAC 57.129 33.333 0.00 0.00 0.00 2.39
4678 6356 7.297936 TGTTTTACTTCCTCTGTCTCATACA 57.702 36.000 0.00 0.00 36.42 2.29
4679 6357 7.152645 TGTTTTACTTCCTCTGTCTCATACAC 58.847 38.462 0.00 0.00 33.45 2.90
4680 6358 7.015292 TGTTTTACTTCCTCTGTCTCATACACT 59.985 37.037 0.00 0.00 33.45 3.55
4681 6359 8.521176 GTTTTACTTCCTCTGTCTCATACACTA 58.479 37.037 0.00 0.00 33.45 2.74
4682 6360 7.867305 TTACTTCCTCTGTCTCATACACTAG 57.133 40.000 0.00 0.00 33.45 2.57
4683 6361 5.822204 ACTTCCTCTGTCTCATACACTAGT 58.178 41.667 0.00 0.00 33.45 2.57
4684 6362 5.650266 ACTTCCTCTGTCTCATACACTAGTG 59.350 44.000 21.44 21.44 33.45 2.74
4685 6363 5.180810 TCCTCTGTCTCATACACTAGTGT 57.819 43.478 30.13 30.13 46.87 3.55
4686 6364 5.571285 TCCTCTGTCTCATACACTAGTGTT 58.429 41.667 32.15 17.44 41.83 3.32
4687 6365 6.718294 TCCTCTGTCTCATACACTAGTGTTA 58.282 40.000 32.15 18.33 41.83 2.41
4688 6366 7.173032 TCCTCTGTCTCATACACTAGTGTTAA 58.827 38.462 32.15 16.96 41.83 2.01
4689 6367 7.668469 TCCTCTGTCTCATACACTAGTGTTAAA 59.332 37.037 32.15 16.21 41.83 1.52
4690 6368 8.304596 CCTCTGTCTCATACACTAGTGTTAAAA 58.695 37.037 32.15 15.83 41.83 1.52
4691 6369 9.692749 CTCTGTCTCATACACTAGTGTTAAAAA 57.307 33.333 32.15 15.45 41.83 1.94
4711 6389 4.852609 AAATGTCTTACGTTATGCGACC 57.147 40.909 0.00 0.00 44.77 4.79
4712 6390 1.898938 TGTCTTACGTTATGCGACCG 58.101 50.000 0.00 0.00 44.77 4.79
4713 6391 1.199789 TGTCTTACGTTATGCGACCGT 59.800 47.619 0.00 0.00 44.77 4.83
4714 6392 1.580704 GTCTTACGTTATGCGACCGTG 59.419 52.381 0.00 0.00 44.77 4.94
4715 6393 0.918619 CTTACGTTATGCGACCGTGG 59.081 55.000 0.00 0.00 44.77 4.94
4716 6394 0.458197 TTACGTTATGCGACCGTGGG 60.458 55.000 0.00 0.00 44.77 4.61
4717 6395 2.282147 TACGTTATGCGACCGTGGGG 62.282 60.000 0.00 0.00 44.77 4.96
4718 6396 2.512974 GTTATGCGACCGTGGGGG 60.513 66.667 0.00 0.00 43.62 5.40
4727 6405 4.728409 CCGTGGGGGTACTTTTCC 57.272 61.111 0.00 0.00 0.00 3.13
4863 6541 1.047801 AGGTTTGTGGATTTGCACCC 58.952 50.000 0.00 0.00 0.00 4.61
4929 6611 8.829612 CATGGTTTATAATTTTTGGGCTTCATC 58.170 33.333 0.00 0.00 0.00 2.92
4939 6621 1.352017 TGGGCTTCATCTCTTCTTGCA 59.648 47.619 0.00 0.00 0.00 4.08
4940 6622 2.025605 TGGGCTTCATCTCTTCTTGCAT 60.026 45.455 0.00 0.00 0.00 3.96
5012 6694 6.811665 GGCTGGACAAAAATACTAATTTCACC 59.188 38.462 0.00 0.00 34.12 4.02
5051 6734 4.365723 ACTTCACTTGAAAAATGCTGCTG 58.634 39.130 0.00 0.00 33.07 4.41
5078 6762 7.390718 ACATTGTTACCTCATCCTTGTTCTAAC 59.609 37.037 0.00 0.00 0.00 2.34
5200 6888 6.445357 TGAAGGTAAACTTGTTTCTTCACC 57.555 37.500 18.23 13.38 40.21 4.02
5218 6906 5.469373 TCACCGAATCAAAATGATCTTCG 57.531 39.130 8.41 8.41 38.13 3.79
5220 6908 5.023920 CACCGAATCAAAATGATCTTCGTG 58.976 41.667 12.41 8.55 37.24 4.35
5224 6912 5.002840 CGAATCAAAATGATCTTCGTGCAAC 59.997 40.000 7.56 0.00 35.76 4.17
5229 6917 3.610040 ATGATCTTCGTGCAACCTACA 57.390 42.857 0.00 0.00 0.00 2.74
5258 6946 1.293179 GTTCATGGGTTTGGCAGCC 59.707 57.895 3.66 3.66 44.31 4.85
5369 7058 7.563020 AGATCATCTCTTTCAGATTGCAGTTA 58.437 34.615 0.00 0.00 40.20 2.24
5392 7081 2.936919 TTCTCATGGCTTCTGTGTGT 57.063 45.000 0.00 0.00 0.00 3.72
5508 7197 4.379603 CGAAGGTAGGTATCGCCATTAGAG 60.380 50.000 0.00 0.00 40.61 2.43
5510 7199 4.936802 AGGTAGGTATCGCCATTAGAGAT 58.063 43.478 0.00 0.00 40.61 2.75
5585 7341 1.352083 AGTACCTCTCTGCTTGGCAA 58.648 50.000 0.00 0.00 38.41 4.52
5747 7503 3.009473 TGAGTTGCCTAGCCTGAATTTCT 59.991 43.478 0.00 0.00 0.00 2.52
5764 7520 6.659242 TGAATTTCTTTTGGGACCTCACTATC 59.341 38.462 0.00 0.00 0.00 2.08
5887 7678 2.162608 ACGTGCTAATTTGGCGCATTTA 59.837 40.909 16.89 0.00 39.81 1.40
6004 7795 3.795623 ACGCTGTCTACAAATATCGGT 57.204 42.857 0.00 0.00 0.00 4.69
6047 7841 1.135139 GATCGCTGCCACTCTGTTCTA 59.865 52.381 0.00 0.00 0.00 2.10
6102 7896 3.958704 TGTACATTTTTGCTGTTGTCGG 58.041 40.909 0.00 0.00 0.00 4.79
6226 8021 0.439985 CACGCCGACATCTGAAACAG 59.560 55.000 0.00 0.00 0.00 3.16
6230 8025 1.266718 GCCGACATCTGAAACAGCAAA 59.733 47.619 0.00 0.00 0.00 3.68
6236 8031 5.504665 CGACATCTGAAACAGCAAAGAGTTT 60.505 40.000 0.00 0.00 40.38 2.66
6265 8064 3.432592 CGGATCATCAAGCATAAGAGCTG 59.567 47.826 0.00 0.00 45.89 4.24
6266 8065 3.188873 GGATCATCAAGCATAAGAGCTGC 59.811 47.826 0.00 0.00 45.89 5.25
6267 8066 2.569059 TCATCAAGCATAAGAGCTGCC 58.431 47.619 0.00 0.00 45.89 4.85
6268 8067 1.263484 CATCAAGCATAAGAGCTGCCG 59.737 52.381 0.00 0.00 45.89 5.69
6269 8068 0.250234 TCAAGCATAAGAGCTGCCGT 59.750 50.000 0.00 0.00 45.89 5.68
6270 8069 1.480545 TCAAGCATAAGAGCTGCCGTA 59.519 47.619 0.00 0.00 45.89 4.02
6271 8070 1.863454 CAAGCATAAGAGCTGCCGTAG 59.137 52.381 0.00 0.00 45.89 3.51
6272 8071 1.115467 AGCATAAGAGCTGCCGTAGT 58.885 50.000 0.00 0.00 44.66 2.73
6273 8072 1.482593 AGCATAAGAGCTGCCGTAGTT 59.517 47.619 0.00 0.00 44.66 2.24
6274 8073 2.093447 AGCATAAGAGCTGCCGTAGTTT 60.093 45.455 0.00 0.00 44.66 2.66
6275 8074 2.285488 GCATAAGAGCTGCCGTAGTTTC 59.715 50.000 0.00 0.00 33.44 2.78
6280 8079 0.533032 AGCTGCCGTAGTTTCTCTCC 59.467 55.000 0.00 0.00 0.00 3.71
6281 8080 0.533032 GCTGCCGTAGTTTCTCTCCT 59.467 55.000 0.00 0.00 0.00 3.69
6294 8093 4.052229 CTCCTCGCGTCCGTGGTT 62.052 66.667 5.77 0.00 45.64 3.67
6297 8096 4.695231 CTCGCGTCCGTGGTTCGT 62.695 66.667 5.77 0.00 37.94 3.85
6298 8097 4.986587 TCGCGTCCGTGGTTCGTG 62.987 66.667 5.77 11.25 37.94 4.35
6300 8099 4.955774 GCGTCCGTGGTTCGTGGT 62.956 66.667 7.68 0.00 37.94 4.16
6301 8100 2.644418 CGTCCGTGGTTCGTGGTA 59.356 61.111 0.00 0.00 37.94 3.25
6307 8106 0.109643 CGTGGTTCGTGGTATCGTCA 60.110 55.000 0.00 0.00 34.52 4.35
6311 8110 1.546834 GTTCGTGGTATCGTCAGAGC 58.453 55.000 0.00 0.00 0.00 4.09
6312 8111 1.135489 GTTCGTGGTATCGTCAGAGCA 60.135 52.381 0.00 0.00 0.00 4.26
6372 8177 5.192927 TGGTTGGTTAGCTTATGATTCTGG 58.807 41.667 0.00 0.00 0.00 3.86
6533 8344 0.365859 GTTCGTTCGGACTGAATCGC 59.634 55.000 0.00 0.00 39.21 4.58
6609 8420 6.016777 AGAGAACGAAATGAAGATGTGCTTTT 60.017 34.615 0.00 0.00 36.83 2.27
6627 8438 5.708948 GCTTTTGCAGGTATCACAATTGTA 58.291 37.500 11.53 0.49 46.58 2.41
6628 8439 6.155827 GCTTTTGCAGGTATCACAATTGTAA 58.844 36.000 11.53 0.00 46.58 2.41
6629 8440 6.308766 GCTTTTGCAGGTATCACAATTGTAAG 59.691 38.462 11.53 7.75 46.58 2.34
6700 8512 6.644248 TTTTAAAGCTAACTGGGAACTTCC 57.356 37.500 0.00 0.00 35.23 3.46
6750 8562 2.351706 TTTCCACAAAGGTACCGCTT 57.648 45.000 6.18 0.95 39.02 4.68
6863 8675 5.877012 GCCAAACTGTCTCATCAAGATTAGA 59.123 40.000 0.00 0.00 36.11 2.10
6928 8766 3.630892 TTAAAGGCCGTGGTATTGCTA 57.369 42.857 0.00 0.00 0.00 3.49
7027 8866 2.631160 TCGAAAGGCTTTTGACTCCA 57.369 45.000 23.03 3.89 36.22 3.86
7102 8941 6.910191 ACCTGGTGTGATTGGATCAATAATA 58.090 36.000 0.00 0.00 41.69 0.98
7217 9056 6.670695 ATCCCCATACCTTTTCATTATTGC 57.329 37.500 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.158697 TCTTTTCTCTGTGATGACGGAAAATA 58.841 34.615 0.00 0.00 37.02 1.40
4 5 5.997746 TCTTTTCTCTGTGATGACGGAAAAT 59.002 36.000 0.00 0.00 37.02 1.82
7 8 4.600692 TCTTTTCTCTGTGATGACGGAA 57.399 40.909 0.00 0.00 37.02 4.30
8 9 4.600692 TTCTTTTCTCTGTGATGACGGA 57.399 40.909 0.00 0.00 36.03 4.69
10 11 5.235186 ACAGTTTCTTTTCTCTGTGATGACG 59.765 40.000 0.00 0.00 39.27 4.35
11 12 6.610741 ACAGTTTCTTTTCTCTGTGATGAC 57.389 37.500 0.00 0.00 39.27 3.06
101 115 3.427503 CCAGACTGAACACAAAACACCAC 60.428 47.826 3.32 0.00 0.00 4.16
119 133 5.071788 AGTTAGTTCCAGAAATGACACCAGA 59.928 40.000 5.70 0.00 29.09 3.86
121 135 5.163248 TGAGTTAGTTCCAGAAATGACACCA 60.163 40.000 5.70 1.29 29.09 4.17
134 148 1.066136 GTTCGCGGTGAGTTAGTTCC 58.934 55.000 6.13 0.00 0.00 3.62
155 169 2.449137 AGGGAATCTCATGGGCTTTG 57.551 50.000 0.00 0.00 0.00 2.77
156 170 2.358615 GGAAGGGAATCTCATGGGCTTT 60.359 50.000 0.00 0.00 0.00 3.51
161 175 3.939740 TCTTGGAAGGGAATCTCATGG 57.060 47.619 0.00 0.00 0.00 3.66
162 176 5.692928 AGAATCTTGGAAGGGAATCTCATG 58.307 41.667 0.00 0.00 0.00 3.07
167 181 7.831690 AGTTTCTAAGAATCTTGGAAGGGAATC 59.168 37.037 18.65 8.96 0.00 2.52
169 183 7.091533 AGTTTCTAAGAATCTTGGAAGGGAA 57.908 36.000 18.65 4.85 0.00 3.97
186 213 7.872993 ACAAGTGATTTCAATCTCGAGTTTCTA 59.127 33.333 13.13 0.00 36.39 2.10
209 237 8.708742 CGTCATAATTTTGTCAGAGTCTTACAA 58.291 33.333 14.53 14.53 0.00 2.41
214 242 6.223852 ACACGTCATAATTTTGTCAGAGTCT 58.776 36.000 0.00 0.00 0.00 3.24
215 243 6.467723 ACACGTCATAATTTTGTCAGAGTC 57.532 37.500 0.00 0.00 0.00 3.36
219 247 6.468956 GGCATAACACGTCATAATTTTGTCAG 59.531 38.462 0.00 0.00 0.00 3.51
220 248 6.318628 GGCATAACACGTCATAATTTTGTCA 58.681 36.000 0.00 0.00 0.00 3.58
221 249 5.741982 GGGCATAACACGTCATAATTTTGTC 59.258 40.000 0.00 0.00 0.00 3.18
222 250 5.417580 AGGGCATAACACGTCATAATTTTGT 59.582 36.000 0.00 0.00 0.00 2.83
223 251 5.743398 CAGGGCATAACACGTCATAATTTTG 59.257 40.000 0.00 0.00 0.00 2.44
224 252 5.650266 TCAGGGCATAACACGTCATAATTTT 59.350 36.000 0.00 0.00 0.00 1.82
227 255 4.415881 TCAGGGCATAACACGTCATAAT 57.584 40.909 0.00 0.00 0.00 1.28
229 257 3.897141 TTCAGGGCATAACACGTCATA 57.103 42.857 0.00 0.00 0.00 2.15
230 258 2.779755 TTCAGGGCATAACACGTCAT 57.220 45.000 0.00 0.00 0.00 3.06
231 259 2.552599 TTTCAGGGCATAACACGTCA 57.447 45.000 0.00 0.00 0.00 4.35
232 260 3.500680 TCTTTTTCAGGGCATAACACGTC 59.499 43.478 0.00 0.00 0.00 4.34
233 261 3.482436 TCTTTTTCAGGGCATAACACGT 58.518 40.909 0.00 0.00 0.00 4.49
234 262 4.497473 TTCTTTTTCAGGGCATAACACG 57.503 40.909 0.00 0.00 0.00 4.49
235 263 6.202762 CCTTTTTCTTTTTCAGGGCATAACAC 59.797 38.462 0.00 0.00 0.00 3.32
236 264 6.126911 ACCTTTTTCTTTTTCAGGGCATAACA 60.127 34.615 0.00 0.00 0.00 2.41
239 267 6.098982 TCAACCTTTTTCTTTTTCAGGGCATA 59.901 34.615 0.00 0.00 0.00 3.14
240 268 5.104569 TCAACCTTTTTCTTTTTCAGGGCAT 60.105 36.000 0.00 0.00 0.00 4.40
242 270 4.765273 TCAACCTTTTTCTTTTTCAGGGC 58.235 39.130 0.00 0.00 0.00 5.19
243 271 6.220726 TCTCAACCTTTTTCTTTTTCAGGG 57.779 37.500 0.00 0.00 0.00 4.45
247 277 9.317936 ACATCATTCTCAACCTTTTTCTTTTTC 57.682 29.630 0.00 0.00 0.00 2.29
252 282 5.537674 AGCACATCATTCTCAACCTTTTTCT 59.462 36.000 0.00 0.00 0.00 2.52
254 284 5.279156 GGAGCACATCATTCTCAACCTTTTT 60.279 40.000 0.00 0.00 0.00 1.94
259 289 2.715046 TGGAGCACATCATTCTCAACC 58.285 47.619 0.00 0.00 0.00 3.77
268 298 2.618241 GACAAGTGTTTGGAGCACATCA 59.382 45.455 0.00 0.00 38.66 3.07
282 312 4.278669 AGTACAGACTACCACTGACAAGTG 59.721 45.833 0.00 0.00 43.15 3.16
283 313 4.471548 AGTACAGACTACCACTGACAAGT 58.528 43.478 0.00 0.00 38.55 3.16
284 314 4.762765 AGAGTACAGACTACCACTGACAAG 59.237 45.833 0.00 0.00 35.45 3.16
286 316 4.368565 AGAGTACAGACTACCACTGACA 57.631 45.455 0.00 0.00 35.45 3.58
288 318 4.079970 CCAAGAGTACAGACTACCACTGA 58.920 47.826 0.00 0.00 35.45 3.41
289 319 3.193691 CCCAAGAGTACAGACTACCACTG 59.806 52.174 0.00 0.00 35.45 3.66
290 320 3.432378 CCCAAGAGTACAGACTACCACT 58.568 50.000 0.00 0.00 35.45 4.00
291 321 2.094130 GCCCAAGAGTACAGACTACCAC 60.094 54.545 0.00 0.00 35.45 4.16
293 323 1.481363 GGCCCAAGAGTACAGACTACC 59.519 57.143 0.00 0.00 35.45 3.18
294 324 2.166664 CTGGCCCAAGAGTACAGACTAC 59.833 54.545 0.00 0.00 35.45 2.73
295 325 2.042569 TCTGGCCCAAGAGTACAGACTA 59.957 50.000 0.00 0.00 35.45 2.59
296 326 1.203187 TCTGGCCCAAGAGTACAGACT 60.203 52.381 0.00 0.00 39.20 3.24
297 327 1.267121 TCTGGCCCAAGAGTACAGAC 58.733 55.000 0.00 0.00 33.62 3.51
299 329 2.814336 GTTTTCTGGCCCAAGAGTACAG 59.186 50.000 0.00 0.00 0.00 2.74
300 330 2.173782 TGTTTTCTGGCCCAAGAGTACA 59.826 45.455 0.00 2.93 0.00 2.90
301 331 2.814336 CTGTTTTCTGGCCCAAGAGTAC 59.186 50.000 0.00 0.21 0.00 2.73
302 332 2.814097 GCTGTTTTCTGGCCCAAGAGTA 60.814 50.000 0.00 0.00 0.00 2.59
303 333 1.986882 CTGTTTTCTGGCCCAAGAGT 58.013 50.000 0.00 0.00 0.00 3.24
304 334 0.600057 GCTGTTTTCTGGCCCAAGAG 59.400 55.000 0.00 0.00 0.00 2.85
305 335 1.172180 CGCTGTTTTCTGGCCCAAGA 61.172 55.000 0.00 0.00 0.00 3.02
306 336 1.286880 CGCTGTTTTCTGGCCCAAG 59.713 57.895 0.00 0.00 0.00 3.61
307 337 2.855514 GCGCTGTTTTCTGGCCCAA 61.856 57.895 0.00 0.00 0.00 4.12
308 338 3.294493 GCGCTGTTTTCTGGCCCA 61.294 61.111 0.00 0.00 0.00 5.36
309 339 4.056125 GGCGCTGTTTTCTGGCCC 62.056 66.667 7.64 0.00 37.82 5.80
310 340 2.087462 AAAGGCGCTGTTTTCTGGCC 62.087 55.000 7.64 0.00 44.07 5.36
311 341 0.940991 CAAAGGCGCTGTTTTCTGGC 60.941 55.000 7.64 0.00 0.00 4.85
312 342 0.385390 ACAAAGGCGCTGTTTTCTGG 59.615 50.000 7.64 0.00 0.00 3.86
313 343 2.290641 ACTACAAAGGCGCTGTTTTCTG 59.709 45.455 7.64 0.00 0.00 3.02
314 344 2.548480 GACTACAAAGGCGCTGTTTTCT 59.452 45.455 7.64 0.00 0.00 2.52
315 345 2.548480 AGACTACAAAGGCGCTGTTTTC 59.452 45.455 7.64 4.19 35.06 2.29
316 346 2.548480 GAGACTACAAAGGCGCTGTTTT 59.452 45.455 7.64 3.17 35.06 2.43
317 347 2.143925 GAGACTACAAAGGCGCTGTTT 58.856 47.619 7.64 4.76 35.06 2.83
318 348 1.070134 TGAGACTACAAAGGCGCTGTT 59.930 47.619 7.64 0.00 35.06 3.16
319 349 0.679505 TGAGACTACAAAGGCGCTGT 59.320 50.000 7.64 6.69 35.06 4.40
320 350 1.337260 ACTGAGACTACAAAGGCGCTG 60.337 52.381 7.64 0.00 35.06 5.18
321 351 0.969894 ACTGAGACTACAAAGGCGCT 59.030 50.000 7.64 0.00 35.06 5.92
322 352 1.797025 AACTGAGACTACAAAGGCGC 58.203 50.000 0.00 0.00 35.06 6.53
323 353 3.909430 TGTAACTGAGACTACAAAGGCG 58.091 45.455 0.00 0.00 35.06 5.52
324 354 5.054477 TGTTGTAACTGAGACTACAAAGGC 58.946 41.667 11.47 3.81 39.17 4.35
325 355 7.548196 TTTGTTGTAACTGAGACTACAAAGG 57.452 36.000 15.77 0.00 43.04 3.11
344 374 0.179078 TACCCGTGTGCGTCTTTGTT 60.179 50.000 0.00 0.00 36.15 2.83
351 384 4.588854 TGCGTTACCCGTGTGCGT 62.589 61.111 0.08 0.00 39.32 5.24
402 435 6.415573 GTGAGGTGGAGTTGTTAGGATTATT 58.584 40.000 0.00 0.00 0.00 1.40
403 436 5.104485 GGTGAGGTGGAGTTGTTAGGATTAT 60.104 44.000 0.00 0.00 0.00 1.28
405 438 3.009143 GGTGAGGTGGAGTTGTTAGGATT 59.991 47.826 0.00 0.00 0.00 3.01
406 439 2.572104 GGTGAGGTGGAGTTGTTAGGAT 59.428 50.000 0.00 0.00 0.00 3.24
407 440 1.975680 GGTGAGGTGGAGTTGTTAGGA 59.024 52.381 0.00 0.00 0.00 2.94
408 441 1.697432 TGGTGAGGTGGAGTTGTTAGG 59.303 52.381 0.00 0.00 0.00 2.69
409 442 2.767505 GTGGTGAGGTGGAGTTGTTAG 58.232 52.381 0.00 0.00 0.00 2.34
410 443 1.069513 CGTGGTGAGGTGGAGTTGTTA 59.930 52.381 0.00 0.00 0.00 2.41
413 446 0.105964 TTCGTGGTGAGGTGGAGTTG 59.894 55.000 0.00 0.00 0.00 3.16
416 449 0.105964 TTGTTCGTGGTGAGGTGGAG 59.894 55.000 0.00 0.00 0.00 3.86
417 450 0.105964 CTTGTTCGTGGTGAGGTGGA 59.894 55.000 0.00 0.00 0.00 4.02
418 451 0.884704 CCTTGTTCGTGGTGAGGTGG 60.885 60.000 0.00 0.00 0.00 4.61
420 453 0.834612 TTCCTTGTTCGTGGTGAGGT 59.165 50.000 0.00 0.00 0.00 3.85
422 455 4.537015 GATTTTTCCTTGTTCGTGGTGAG 58.463 43.478 0.00 0.00 0.00 3.51
423 456 3.316868 GGATTTTTCCTTGTTCGTGGTGA 59.683 43.478 0.00 0.00 0.00 4.02
425 458 3.067601 GTGGATTTTTCCTTGTTCGTGGT 59.932 43.478 0.00 0.00 0.00 4.16
427 460 3.317993 AGGTGGATTTTTCCTTGTTCGTG 59.682 43.478 0.00 0.00 0.00 4.35
428 461 3.317993 CAGGTGGATTTTTCCTTGTTCGT 59.682 43.478 0.00 0.00 0.00 3.85
430 463 3.554960 GGCAGGTGGATTTTTCCTTGTTC 60.555 47.826 0.00 0.00 0.00 3.18
432 465 1.970640 GGCAGGTGGATTTTTCCTTGT 59.029 47.619 0.00 0.00 0.00 3.16
433 466 1.276138 GGGCAGGTGGATTTTTCCTTG 59.724 52.381 0.00 0.00 0.00 3.61
434 467 1.644509 GGGCAGGTGGATTTTTCCTT 58.355 50.000 0.00 0.00 0.00 3.36
435 468 0.611896 CGGGCAGGTGGATTTTTCCT 60.612 55.000 0.00 0.00 0.00 3.36
436 469 1.604147 CCGGGCAGGTGGATTTTTCC 61.604 60.000 0.00 0.00 34.51 3.13
437 470 1.890174 CCGGGCAGGTGGATTTTTC 59.110 57.895 0.00 0.00 34.51 2.29
455 541 2.528743 CCAGCATCGATCGGCACAC 61.529 63.158 16.41 0.89 0.00 3.82
512 606 4.120331 GCATGTGTGGCTTCCGGC 62.120 66.667 0.00 0.00 40.90 6.13
517 611 3.673484 GCCGTGCATGTGTGGCTT 61.673 61.111 14.48 0.00 44.16 4.35
521 615 4.388080 CCGTGCCGTGCATGTGTG 62.388 66.667 14.37 0.00 43.26 3.82
541 656 2.755655 CCGAGGAGAAAGTAAGAGAGCA 59.244 50.000 0.00 0.00 0.00 4.26
549 664 2.735151 TGCTCATCCGAGGAGAAAGTA 58.265 47.619 14.18 0.00 39.88 2.24
550 665 1.561643 TGCTCATCCGAGGAGAAAGT 58.438 50.000 14.18 0.00 39.88 2.66
649 769 2.259511 CCGCCTTTTGCTTCTGGC 59.740 61.111 0.00 0.00 41.76 4.85
737 857 5.215069 AGAGAGAGAGAGAGAGAGAGATGT 58.785 45.833 0.00 0.00 0.00 3.06
738 858 5.539574 AGAGAGAGAGAGAGAGAGAGAGATG 59.460 48.000 0.00 0.00 0.00 2.90
739 859 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
740 860 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
741 861 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
742 862 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
743 863 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
744 864 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
745 865 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
746 866 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
747 867 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
748 868 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
749 869 4.648762 AGTGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
750 870 4.614475 AGTGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
751 871 4.202202 GGAGTGAGAGAGAGAGAGAGAGAG 60.202 54.167 0.00 0.00 0.00 3.20
881 1001 0.885196 GGATCGATCTCGGGGAAGAG 59.115 60.000 23.96 0.00 40.29 2.85
882 1002 0.889638 CGGATCGATCTCGGGGAAGA 60.890 60.000 23.96 0.00 40.29 2.87
884 1004 1.152819 ACGGATCGATCTCGGGGAA 60.153 57.895 27.98 0.00 40.29 3.97
885 1005 1.600076 GACGGATCGATCTCGGGGA 60.600 63.158 27.98 0.00 40.29 4.81
886 1006 2.627737 GGACGGATCGATCTCGGGG 61.628 68.421 27.98 15.68 40.29 5.73
887 1007 1.244697 ATGGACGGATCGATCTCGGG 61.245 60.000 27.98 17.52 40.29 5.14
888 1008 0.169230 GATGGACGGATCGATCTCGG 59.831 60.000 27.98 19.38 37.17 4.63
889 1009 0.179212 CGATGGACGGATCGATCTCG 60.179 60.000 23.96 24.60 46.72 4.04
890 1010 3.685459 CGATGGACGGATCGATCTC 57.315 57.895 23.96 14.71 46.72 2.75
910 1030 1.081906 GAGGCACGTACGAACACGA 60.082 57.895 24.41 0.00 44.69 4.35
912 1032 0.389426 ATGGAGGCACGTACGAACAC 60.389 55.000 24.41 8.98 0.00 3.32
914 1034 0.804933 GGATGGAGGCACGTACGAAC 60.805 60.000 24.41 12.91 0.00 3.95
915 1035 1.514087 GGATGGAGGCACGTACGAA 59.486 57.895 24.41 0.00 0.00 3.85
919 1039 2.420568 GGACGGATGGAGGCACGTA 61.421 63.158 0.00 0.00 39.95 3.57
920 1040 3.771160 GGACGGATGGAGGCACGT 61.771 66.667 0.00 0.00 42.88 4.49
922 1042 3.718210 GACGGACGGATGGAGGCAC 62.718 68.421 0.00 0.00 0.00 5.01
923 1043 3.458163 GACGGACGGATGGAGGCA 61.458 66.667 0.00 0.00 0.00 4.75
924 1044 4.222847 GGACGGACGGATGGAGGC 62.223 72.222 0.00 0.00 0.00 4.70
925 1045 2.442272 AGGACGGACGGATGGAGG 60.442 66.667 0.00 0.00 0.00 4.30
926 1046 1.448922 GAGAGGACGGACGGATGGAG 61.449 65.000 0.00 0.00 0.00 3.86
927 1047 1.453379 GAGAGGACGGACGGATGGA 60.453 63.158 0.00 0.00 0.00 3.41
928 1048 2.491022 GGAGAGGACGGACGGATGG 61.491 68.421 0.00 0.00 0.00 3.51
930 1050 1.000019 TTGGAGAGGACGGACGGAT 60.000 57.895 0.00 0.00 0.00 4.18
931 1051 1.975407 GTTGGAGAGGACGGACGGA 60.975 63.158 0.00 0.00 0.00 4.69
932 1052 1.935327 GAGTTGGAGAGGACGGACGG 61.935 65.000 0.00 0.00 0.00 4.79
933 1053 1.507174 GAGTTGGAGAGGACGGACG 59.493 63.158 0.00 0.00 0.00 4.79
934 1054 1.242665 ACGAGTTGGAGAGGACGGAC 61.243 60.000 0.00 0.00 0.00 4.79
935 1055 1.074423 ACGAGTTGGAGAGGACGGA 59.926 57.895 0.00 0.00 0.00 4.69
936 1056 1.213013 CACGAGTTGGAGAGGACGG 59.787 63.158 0.00 0.00 0.00 4.79
937 1057 1.444553 GCACGAGTTGGAGAGGACG 60.445 63.158 0.00 0.00 0.00 4.79
938 1058 0.109039 GAGCACGAGTTGGAGAGGAC 60.109 60.000 0.00 0.00 0.00 3.85
939 1059 1.587043 CGAGCACGAGTTGGAGAGGA 61.587 60.000 0.00 0.00 42.66 3.71
940 1060 1.153939 CGAGCACGAGTTGGAGAGG 60.154 63.158 0.00 0.00 42.66 3.69
941 1061 1.876664 TCGAGCACGAGTTGGAGAG 59.123 57.895 0.88 0.00 43.81 3.20
942 1062 4.074647 TCGAGCACGAGTTGGAGA 57.925 55.556 0.88 0.00 43.81 3.71
955 1075 1.193650 GATCTCTCCACGACGATCGAG 59.806 57.143 24.34 17.22 43.74 4.04
971 1110 3.842923 CGCTCGGTGGCCTGATCT 61.843 66.667 3.32 0.00 0.00 2.75
1065 1204 1.502231 CCAACACTGACACGAGAAGG 58.498 55.000 0.00 0.00 0.00 3.46
1077 1216 3.953775 CCCTCCACCGCCAACACT 61.954 66.667 0.00 0.00 0.00 3.55
1343 1500 2.622942 AGTGCAAAGCGGAATGAAGAAA 59.377 40.909 0.00 0.00 0.00 2.52
1355 1512 0.238553 GACCTCCGAAAGTGCAAAGC 59.761 55.000 0.00 0.00 0.00 3.51
1367 1535 0.595588 CAGGATCGATCTGACCTCCG 59.404 60.000 23.96 0.13 34.36 4.63
1389 1557 0.803740 TGCACCGCCGGTTAAATTAC 59.196 50.000 5.76 0.00 31.02 1.89
1391 1559 1.582461 GTGCACCGCCGGTTAAATT 59.418 52.632 5.76 0.00 31.02 1.82
1408 1577 1.531149 CAGATCAAAGGAAACGCACGT 59.469 47.619 0.00 0.00 0.00 4.49
1420 1589 6.978659 CGTAATTGCTAGTAGGACAGATCAAA 59.021 38.462 0.00 0.00 0.00 2.69
1423 1597 5.462405 CCGTAATTGCTAGTAGGACAGATC 58.538 45.833 0.00 0.00 0.00 2.75
1450 1624 7.169645 GTGTATTAAACCATTTATGCATGCAGG 59.830 37.037 26.69 22.21 0.00 4.85
1460 1634 8.388656 AGAGAGGAGGTGTATTAAACCATTTA 57.611 34.615 5.82 0.00 40.40 1.40
1461 1635 7.037586 TGAGAGAGGAGGTGTATTAAACCATTT 60.038 37.037 5.82 0.00 40.40 2.32
1479 1653 3.243359 AGCTAGGGAGAATGAGAGAGG 57.757 52.381 0.00 0.00 0.00 3.69
1482 1656 6.418057 ACATTTAGCTAGGGAGAATGAGAG 57.582 41.667 17.83 0.00 33.24 3.20
1502 1676 8.385898 TCTAAAACGTGTGGAATCTTTAACAT 57.614 30.769 0.00 0.00 0.00 2.71
1503 1677 7.789273 TCTAAAACGTGTGGAATCTTTAACA 57.211 32.000 0.00 0.00 0.00 2.41
1506 1680 7.662258 TCCATTCTAAAACGTGTGGAATCTTTA 59.338 33.333 7.79 0.00 33.15 1.85
1507 1681 6.488683 TCCATTCTAAAACGTGTGGAATCTTT 59.511 34.615 7.79 0.00 33.15 2.52
1512 1695 5.357314 TGTTTCCATTCTAAAACGTGTGGAA 59.643 36.000 0.00 0.81 42.25 3.53
1526 1709 5.859205 AATCCTATTGCCTGTTTCCATTC 57.141 39.130 0.00 0.00 0.00 2.67
1532 1715 3.769300 GGTCCAAATCCTATTGCCTGTTT 59.231 43.478 0.00 0.00 0.00 2.83
1536 1719 3.628257 CCAAGGTCCAAATCCTATTGCCT 60.628 47.826 0.00 0.00 34.56 4.75
1560 1744 8.664079 AGACAGAAGCCATAGATAACCATATTT 58.336 33.333 0.00 0.00 0.00 1.40
1615 1799 3.069586 TCGAAGAACATGACCAAGACTGT 59.930 43.478 0.00 0.00 0.00 3.55
1635 1819 4.255999 CGCTGACGAAATTAATTCACTCG 58.744 43.478 15.72 15.72 43.93 4.18
1680 1864 1.195115 AGCTTCTTATGCGGGAGTCA 58.805 50.000 0.00 0.00 35.28 3.41
1709 1897 6.442952 TGAAACCCATTTCTTTAACATGTCG 58.557 36.000 0.00 0.00 44.02 4.35
1743 1931 1.988846 AGAAGGAAAAGAGGGTCCCAG 59.011 52.381 11.55 0.00 34.13 4.45
1907 2109 8.850156 ACAAAGATGTGTGCTAAGTATCTTTTT 58.150 29.630 0.00 0.00 42.33 1.94
1909 2111 7.148573 CGACAAAGATGTGTGCTAAGTATCTTT 60.149 37.037 0.00 0.00 44.47 2.52
1912 2114 5.577164 ACGACAAAGATGTGTGCTAAGTATC 59.423 40.000 0.00 0.00 40.74 2.24
1914 2116 4.684242 CACGACAAAGATGTGTGCTAAGTA 59.316 41.667 0.00 0.00 40.74 2.24
1917 2119 3.462982 ACACGACAAAGATGTGTGCTAA 58.537 40.909 0.00 0.00 44.59 3.09
1958 2164 1.589803 AACGAACCCAACAGTAGCAC 58.410 50.000 0.00 0.00 0.00 4.40
1959 2165 3.132925 GTTAACGAACCCAACAGTAGCA 58.867 45.455 0.00 0.00 0.00 3.49
1960 2166 3.059393 GTGTTAACGAACCCAACAGTAGC 60.059 47.826 0.26 0.00 33.10 3.58
1961 2167 3.495753 GGTGTTAACGAACCCAACAGTAG 59.504 47.826 4.14 0.00 33.10 2.57
1962 2168 3.134442 AGGTGTTAACGAACCCAACAGTA 59.866 43.478 10.67 0.00 37.13 2.74
1963 2169 2.092807 AGGTGTTAACGAACCCAACAGT 60.093 45.455 10.67 0.00 37.13 3.55
1964 2170 2.567985 AGGTGTTAACGAACCCAACAG 58.432 47.619 10.67 0.00 37.13 3.16
1965 2171 2.713863 AGGTGTTAACGAACCCAACA 57.286 45.000 10.67 0.00 37.13 3.33
1967 2173 5.374921 TGATAAAGGTGTTAACGAACCCAA 58.625 37.500 10.67 0.00 37.13 4.12
1969 2175 5.471116 AGTTGATAAAGGTGTTAACGAACCC 59.529 40.000 10.67 3.94 37.13 4.11
1970 2176 6.426025 AGAGTTGATAAAGGTGTTAACGAACC 59.574 38.462 6.96 6.96 34.38 3.62
1971 2177 7.288672 CAGAGTTGATAAAGGTGTTAACGAAC 58.711 38.462 0.26 0.00 36.00 3.95
1972 2178 6.073440 GCAGAGTTGATAAAGGTGTTAACGAA 60.073 38.462 0.26 0.00 0.00 3.85
1973 2179 5.407387 GCAGAGTTGATAAAGGTGTTAACGA 59.593 40.000 0.26 0.00 0.00 3.85
1974 2180 5.408604 AGCAGAGTTGATAAAGGTGTTAACG 59.591 40.000 0.26 0.00 0.00 3.18
1993 2199 6.697455 CGCAATAATAACTAGACTCAAGCAGA 59.303 38.462 0.00 0.00 0.00 4.26
1994 2200 6.563010 GCGCAATAATAACTAGACTCAAGCAG 60.563 42.308 0.30 0.00 0.00 4.24
1995 2201 5.234329 GCGCAATAATAACTAGACTCAAGCA 59.766 40.000 0.30 0.00 0.00 3.91
1996 2202 5.463724 AGCGCAATAATAACTAGACTCAAGC 59.536 40.000 11.47 0.00 0.00 4.01
1997 2203 8.749841 ATAGCGCAATAATAACTAGACTCAAG 57.250 34.615 11.47 0.00 0.00 3.02
1998 2204 9.841880 CTATAGCGCAATAATAACTAGACTCAA 57.158 33.333 11.47 0.00 0.00 3.02
1999 2205 9.011095 ACTATAGCGCAATAATAACTAGACTCA 57.989 33.333 11.47 0.00 0.00 3.41
2000 2206 9.493206 GACTATAGCGCAATAATAACTAGACTC 57.507 37.037 11.47 0.00 0.00 3.36
2001 2207 9.011095 TGACTATAGCGCAATAATAACTAGACT 57.989 33.333 11.47 0.00 0.00 3.24
2002 2208 9.279904 CTGACTATAGCGCAATAATAACTAGAC 57.720 37.037 11.47 0.00 0.00 2.59
2003 2209 9.011095 ACTGACTATAGCGCAATAATAACTAGA 57.989 33.333 11.47 0.00 0.00 2.43
2004 2210 9.279904 GACTGACTATAGCGCAATAATAACTAG 57.720 37.037 11.47 0.00 0.00 2.57
2005 2211 8.789762 TGACTGACTATAGCGCAATAATAACTA 58.210 33.333 11.47 0.00 0.00 2.24
2006 2212 7.658261 TGACTGACTATAGCGCAATAATAACT 58.342 34.615 11.47 0.00 0.00 2.24
2007 2213 7.869016 TGACTGACTATAGCGCAATAATAAC 57.131 36.000 11.47 0.00 0.00 1.89
2008 2214 7.598869 CCTTGACTGACTATAGCGCAATAATAA 59.401 37.037 11.47 0.00 0.00 1.40
2009 2215 7.090808 CCTTGACTGACTATAGCGCAATAATA 58.909 38.462 11.47 0.71 0.00 0.98
2010 2216 5.928839 CCTTGACTGACTATAGCGCAATAAT 59.071 40.000 11.47 0.00 0.00 1.28
2011 2217 5.289595 CCTTGACTGACTATAGCGCAATAA 58.710 41.667 11.47 0.00 0.00 1.40
2012 2218 4.262036 CCCTTGACTGACTATAGCGCAATA 60.262 45.833 11.47 0.00 0.00 1.90
2013 2219 3.493350 CCCTTGACTGACTATAGCGCAAT 60.493 47.826 11.47 0.00 0.00 3.56
2014 2220 2.159099 CCCTTGACTGACTATAGCGCAA 60.159 50.000 11.47 0.00 0.00 4.85
2015 2221 1.409064 CCCTTGACTGACTATAGCGCA 59.591 52.381 11.47 0.00 0.00 6.09
2016 2222 1.681793 TCCCTTGACTGACTATAGCGC 59.318 52.381 0.00 0.00 0.00 5.92
2017 2223 2.688446 TGTCCCTTGACTGACTATAGCG 59.312 50.000 0.00 0.00 42.28 4.26
2018 2224 3.954904 TCTGTCCCTTGACTGACTATAGC 59.045 47.826 0.00 0.00 42.43 2.97
2019 2225 5.654650 AGTTCTGTCCCTTGACTGACTATAG 59.345 44.000 0.00 0.00 45.59 1.31
2020 2226 5.580998 AGTTCTGTCCCTTGACTGACTATA 58.419 41.667 2.32 0.00 45.59 1.31
2021 2227 4.421131 AGTTCTGTCCCTTGACTGACTAT 58.579 43.478 2.32 0.00 45.59 2.12
2022 2228 3.845860 AGTTCTGTCCCTTGACTGACTA 58.154 45.455 2.32 0.00 45.59 2.59
2023 2229 2.683768 AGTTCTGTCCCTTGACTGACT 58.316 47.619 2.32 2.00 45.59 3.41
2024 2230 4.602340 TTAGTTCTGTCCCTTGACTGAC 57.398 45.455 2.32 0.00 45.59 3.51
2025 2231 5.825593 AATTAGTTCTGTCCCTTGACTGA 57.174 39.130 0.00 0.00 44.66 3.41
2026 2232 5.765182 ACAAATTAGTTCTGTCCCTTGACTG 59.235 40.000 0.00 0.00 42.28 3.51
2027 2233 5.941788 ACAAATTAGTTCTGTCCCTTGACT 58.058 37.500 0.00 0.00 42.28 3.41
2050 2256 1.340248 GAACAGTTCGAGGTGGACAGA 59.660 52.381 0.00 0.00 0.00 3.41
2052 2258 1.068588 CTGAACAGTTCGAGGTGGACA 59.931 52.381 8.80 0.99 0.00 4.02
2071 2277 1.608590 CACCAAACATCGCAGGAAACT 59.391 47.619 0.00 0.00 46.44 2.66
2072 2278 1.336755 ACACCAAACATCGCAGGAAAC 59.663 47.619 0.00 0.00 0.00 2.78
2097 2303 4.615452 GCATTTTCTGAAGAGAGGCAAGTG 60.615 45.833 0.00 0.00 0.00 3.16
2099 2305 3.119566 GGCATTTTCTGAAGAGAGGCAAG 60.120 47.826 8.56 0.00 0.00 4.01
2100 2306 2.821969 GGCATTTTCTGAAGAGAGGCAA 59.178 45.455 8.56 0.00 0.00 4.52
2101 2307 2.040813 AGGCATTTTCTGAAGAGAGGCA 59.959 45.455 10.58 0.00 0.00 4.75
2102 2308 2.720915 AGGCATTTTCTGAAGAGAGGC 58.279 47.619 0.00 0.00 0.00 4.70
2121 2327 7.503566 TCCTCATTTATTGCAAGATAGGGAAAG 59.496 37.037 4.94 0.00 0.00 2.62
2143 2349 4.816385 TGACACAACTCAAGTGAATTCCTC 59.184 41.667 2.27 0.00 40.16 3.71
2146 2352 4.270084 TCGTGACACAACTCAAGTGAATTC 59.730 41.667 6.37 0.00 40.16 2.17
2156 2362 7.642194 TGTTGATTTTATTTCGTGACACAACTC 59.358 33.333 6.37 0.00 36.13 3.01
2161 2367 6.362283 CCCTTGTTGATTTTATTTCGTGACAC 59.638 38.462 0.00 0.00 0.00 3.67
2166 2372 8.581578 ACATTACCCTTGTTGATTTTATTTCGT 58.418 29.630 0.00 0.00 0.00 3.85
2167 2373 8.980143 ACATTACCCTTGTTGATTTTATTTCG 57.020 30.769 0.00 0.00 0.00 3.46
2219 2427 3.993658 ACTCCTCCTATGGTGATGGTA 57.006 47.619 0.00 0.00 0.00 3.25
2232 2443 4.254492 GACACACCTAATCAAACTCCTCC 58.746 47.826 0.00 0.00 0.00 4.30
2580 2793 1.597854 CAGGCCACACGCTCTTTCA 60.598 57.895 5.01 0.00 37.74 2.69
3411 5078 1.074319 GCTCCGACGTGCAAATACGA 61.074 55.000 0.00 0.00 46.46 3.43
3618 5285 1.150081 CATGGTGATGAGGGGCTCC 59.850 63.158 0.00 0.00 0.00 4.70
3633 5300 1.219124 CGACTCTGGGGTGTCCATG 59.781 63.158 0.00 0.00 46.01 3.66
3651 5318 4.400961 AGGTGCTCCTTGCCGCTC 62.401 66.667 0.18 0.00 42.12 5.03
3732 5399 2.202623 ATGTCGCCGTTCTCGAGC 60.203 61.111 7.81 0.00 39.71 5.03
3772 5439 0.030603 GGGTGAGGGAGGGATTCTCT 60.031 60.000 0.00 0.00 40.18 3.10
3915 5582 3.116531 GGCGCGAACTGGGTGTAC 61.117 66.667 12.10 0.00 0.00 2.90
4110 5777 3.491652 GGCTTGCGGCTCTCGTTC 61.492 66.667 0.00 0.00 41.72 3.95
4241 5908 0.038251 TTACACCAGCGAGCAGAGTG 60.038 55.000 9.51 9.51 34.61 3.51
4282 5950 1.302907 TAGAGAGTACCCCCTCCGTT 58.697 55.000 0.00 0.00 31.53 4.44
4291 5959 5.479306 TCACTGCAAACAATAGAGAGTACC 58.521 41.667 0.00 0.00 0.00 3.34
4354 6022 4.892345 TGTCAATGTCCATTCCTGTCAAAA 59.108 37.500 0.00 0.00 0.00 2.44
4403 6071 0.731514 GATTGTCTTCGTCGGCGTCA 60.732 55.000 10.18 2.17 39.49 4.35
4478 6146 3.057596 CCAACGAATGTGTTGTTATGGCT 60.058 43.478 8.89 0.00 46.08 4.75
4479 6147 3.241701 CCAACGAATGTGTTGTTATGGC 58.758 45.455 8.89 0.00 46.08 4.40
4480 6148 4.497473 ACCAACGAATGTGTTGTTATGG 57.503 40.909 8.89 0.00 46.08 2.74
4481 6149 5.086058 GCTACCAACGAATGTGTTGTTATG 58.914 41.667 8.89 0.00 46.08 1.90
4483 6151 4.127907 TGCTACCAACGAATGTGTTGTTA 58.872 39.130 8.89 0.14 46.08 2.41
4484 6152 2.946329 TGCTACCAACGAATGTGTTGTT 59.054 40.909 8.89 0.00 46.08 2.83
4485 6153 2.548057 CTGCTACCAACGAATGTGTTGT 59.452 45.455 8.89 1.96 46.08 3.32
4486 6154 2.805671 TCTGCTACCAACGAATGTGTTG 59.194 45.455 0.00 3.86 46.86 3.33
4487 6155 2.806244 GTCTGCTACCAACGAATGTGTT 59.194 45.455 0.00 0.00 0.00 3.32
4491 6160 2.959516 TCAGTCTGCTACCAACGAATG 58.040 47.619 0.00 0.00 0.00 2.67
4502 6171 6.418101 TCAAAGGCTTAAATATCAGTCTGCT 58.582 36.000 0.00 0.00 0.00 4.24
4513 6186 7.147776 CCAATCTGAAGGATCAAAGGCTTAAAT 60.148 37.037 0.00 0.00 34.49 1.40
4518 6191 3.011032 ACCAATCTGAAGGATCAAAGGCT 59.989 43.478 6.53 0.00 34.49 4.58
4624 6297 4.143179 GCATTGAGCTGAAAAGAAATGTGC 60.143 41.667 0.00 0.00 41.15 4.57
4625 6298 5.511088 GCATTGAGCTGAAAAGAAATGTG 57.489 39.130 0.00 0.00 41.15 3.21
4655 6333 7.379750 AGTGTATGAGACAGAGGAAGTAAAAC 58.620 38.462 0.00 0.00 39.29 2.43
4657 6335 7.889073 ACTAGTGTATGAGACAGAGGAAGTAAA 59.111 37.037 0.00 0.00 39.29 2.01
4659 6337 6.824196 CACTAGTGTATGAGACAGAGGAAGTA 59.176 42.308 15.06 0.00 39.29 2.24
4660 6338 5.650266 CACTAGTGTATGAGACAGAGGAAGT 59.350 44.000 15.06 0.00 39.29 3.01
4661 6339 5.650266 ACACTAGTGTATGAGACAGAGGAAG 59.350 44.000 26.91 0.00 42.90 3.46
4663 6341 5.180810 ACACTAGTGTATGAGACAGAGGA 57.819 43.478 26.91 0.00 42.90 3.71
4664 6342 5.906113 AACACTAGTGTATGAGACAGAGG 57.094 43.478 28.13 0.00 44.13 3.69
4665 6343 9.692749 TTTTTAACACTAGTGTATGAGACAGAG 57.307 33.333 28.13 0.00 44.13 3.35
4688 6366 5.624292 GGTCGCATAACGTAAGACATTTTT 58.376 37.500 0.00 0.00 44.19 1.94
4689 6367 4.201647 CGGTCGCATAACGTAAGACATTTT 60.202 41.667 0.00 0.00 44.19 1.82
4690 6368 3.305094 CGGTCGCATAACGTAAGACATTT 59.695 43.478 0.00 0.00 44.19 2.32
4691 6369 2.855963 CGGTCGCATAACGTAAGACATT 59.144 45.455 0.00 0.00 44.19 2.71
4692 6370 2.159338 ACGGTCGCATAACGTAAGACAT 60.159 45.455 0.00 0.00 44.19 3.06
4693 6371 1.199789 ACGGTCGCATAACGTAAGACA 59.800 47.619 0.00 0.00 44.19 3.41
4694 6372 1.580704 CACGGTCGCATAACGTAAGAC 59.419 52.381 0.00 0.00 44.19 3.01
4695 6373 1.467883 CCACGGTCGCATAACGTAAGA 60.468 52.381 0.00 0.00 44.19 2.10
4696 6374 0.918619 CCACGGTCGCATAACGTAAG 59.081 55.000 0.00 0.00 44.19 2.34
4697 6375 0.458197 CCCACGGTCGCATAACGTAA 60.458 55.000 0.00 0.00 44.19 3.18
4698 6376 1.139308 CCCACGGTCGCATAACGTA 59.861 57.895 0.00 0.00 44.19 3.57
4699 6377 2.125832 CCCACGGTCGCATAACGT 60.126 61.111 0.00 0.00 44.19 3.99
4700 6378 2.888534 CCCCACGGTCGCATAACG 60.889 66.667 0.00 0.00 45.62 3.18
4701 6379 1.958902 TACCCCCACGGTCGCATAAC 61.959 60.000 0.00 0.00 43.58 1.89
4702 6380 1.685077 TACCCCCACGGTCGCATAA 60.685 57.895 0.00 0.00 43.58 1.90
4703 6381 2.043147 TACCCCCACGGTCGCATA 60.043 61.111 0.00 0.00 43.58 3.14
4704 6382 3.777910 GTACCCCCACGGTCGCAT 61.778 66.667 0.00 0.00 43.58 4.73
4706 6384 2.736579 AAAAGTACCCCCACGGTCGC 62.737 60.000 0.00 0.00 43.58 5.19
4707 6385 0.671472 GAAAAGTACCCCCACGGTCG 60.671 60.000 0.00 0.00 43.58 4.79
4708 6386 0.321919 GGAAAAGTACCCCCACGGTC 60.322 60.000 0.00 0.00 43.58 4.79
4710 6388 0.402887 AAGGAAAAGTACCCCCACGG 59.597 55.000 0.00 0.00 37.81 4.94
4711 6389 2.281539 AAAGGAAAAGTACCCCCACG 57.718 50.000 0.00 0.00 0.00 4.94
4712 6390 3.568443 TCAAAAGGAAAAGTACCCCCAC 58.432 45.455 0.00 0.00 0.00 4.61
4713 6391 3.962063 GTTCAAAAGGAAAAGTACCCCCA 59.038 43.478 0.00 0.00 37.23 4.96
4714 6392 3.005050 CGTTCAAAAGGAAAAGTACCCCC 59.995 47.826 0.00 0.00 37.23 5.40
4715 6393 3.633525 ACGTTCAAAAGGAAAAGTACCCC 59.366 43.478 0.00 0.00 37.23 4.95
4716 6394 4.096833 ACACGTTCAAAAGGAAAAGTACCC 59.903 41.667 0.00 0.00 37.23 3.69
4717 6395 5.032220 CACACGTTCAAAAGGAAAAGTACC 58.968 41.667 0.00 0.00 37.23 3.34
4718 6396 5.633927 ACACACGTTCAAAAGGAAAAGTAC 58.366 37.500 0.00 0.00 37.23 2.73
4869 6549 8.943594 AATCCAGGTAGGTTTATACAACAAAA 57.056 30.769 0.00 0.00 39.02 2.44
4958 6640 3.295093 TCCATTGTTTTCCAAGCACTGA 58.705 40.909 0.00 0.00 36.25 3.41
5012 6694 0.944311 AGTTCACTACCTTGCACGCG 60.944 55.000 3.53 3.53 0.00 6.01
5051 6734 5.940470 AGAACAAGGATGAGGTAACAATGTC 59.060 40.000 0.00 0.00 41.41 3.06
5078 6762 3.643792 CCTAGGAGAAGTTACCCATGGAG 59.356 52.174 15.22 5.95 0.00 3.86
5111 6799 3.061848 CATTCGCAAACCCGCCCT 61.062 61.111 0.00 0.00 0.00 5.19
5126 6814 2.350458 GCCATTGACAACCGGGCAT 61.350 57.895 17.82 0.00 44.01 4.40
5200 6888 4.650985 TGCACGAAGATCATTTTGATTCG 58.349 39.130 8.84 8.84 41.77 3.34
5218 6906 3.911964 CGCATAAAAAGTGTAGGTTGCAC 59.088 43.478 0.00 0.00 37.13 4.57
5220 6908 4.155310 ACGCATAAAAAGTGTAGGTTGC 57.845 40.909 0.00 0.00 0.00 4.17
5224 6912 5.331902 CCATGAACGCATAAAAAGTGTAGG 58.668 41.667 0.00 0.00 32.27 3.18
5229 6917 4.864704 AACCCATGAACGCATAAAAAGT 57.135 36.364 0.00 0.00 32.27 2.66
5258 6946 2.456119 GCATCGACCAACGCCAGAG 61.456 63.158 0.00 0.00 42.26 3.35
5315 7003 1.123861 AGGCAGAGACAGACTTGCCA 61.124 55.000 15.74 0.00 45.78 4.92
5369 7058 4.008330 CACACAGAAGCCATGAGAAAGAT 58.992 43.478 0.00 0.00 0.00 2.40
5585 7341 4.729227 TGCATTCATCAACATCTGCAAT 57.271 36.364 0.00 0.00 36.75 3.56
5747 7503 4.080356 CCATCAGATAGTGAGGTCCCAAAA 60.080 45.833 0.00 0.00 39.07 2.44
5764 7520 2.113807 TGATGAGACCTGGACCATCAG 58.886 52.381 18.48 0.00 40.04 2.90
5988 7779 4.402155 ACCCGTAACCGATATTTGTAGACA 59.598 41.667 0.00 0.00 35.63 3.41
6004 7795 5.473846 TCATGTTTGAGCATTTTACCCGTAA 59.526 36.000 0.00 0.00 0.00 3.18
6047 7841 7.436080 CACATAAATCAGTGCAAAGTCTTTTGT 59.564 33.333 0.00 0.00 44.41 2.83
6226 8021 6.417191 TGATCCGTATGTAAAACTCTTTGC 57.583 37.500 0.00 0.00 0.00 3.68
6230 8025 6.480320 GCTTGATGATCCGTATGTAAAACTCT 59.520 38.462 0.00 0.00 0.00 3.24
6236 8031 7.666623 TCTTATGCTTGATGATCCGTATGTAA 58.333 34.615 0.00 0.00 0.00 2.41
6265 8064 0.525882 GCGAGGAGAGAAACTACGGC 60.526 60.000 0.00 0.00 33.99 5.68
6266 8065 0.248134 CGCGAGGAGAGAAACTACGG 60.248 60.000 0.00 0.00 33.99 4.02
6267 8066 0.447011 ACGCGAGGAGAGAAACTACG 59.553 55.000 15.93 0.00 33.99 3.51
6268 8067 1.202166 GGACGCGAGGAGAGAAACTAC 60.202 57.143 15.93 0.00 0.00 2.73
6269 8068 1.093159 GGACGCGAGGAGAGAAACTA 58.907 55.000 15.93 0.00 0.00 2.24
6270 8069 1.884444 GGACGCGAGGAGAGAAACT 59.116 57.895 15.93 0.00 0.00 2.66
6271 8070 1.514443 CGGACGCGAGGAGAGAAAC 60.514 63.158 15.93 0.00 0.00 2.78
6272 8071 1.970114 ACGGACGCGAGGAGAGAAA 60.970 57.895 15.93 0.00 0.00 2.52
6273 8072 2.359602 ACGGACGCGAGGAGAGAA 60.360 61.111 15.93 0.00 0.00 2.87
6274 8073 3.125573 CACGGACGCGAGGAGAGA 61.126 66.667 15.93 0.00 0.00 3.10
6275 8074 4.180946 CCACGGACGCGAGGAGAG 62.181 72.222 15.93 0.00 0.00 3.20
6293 8092 1.132453 CTGCTCTGACGATACCACGAA 59.868 52.381 0.00 0.00 37.03 3.85
6294 8093 0.733150 CTGCTCTGACGATACCACGA 59.267 55.000 0.00 0.00 37.03 4.35
6296 8095 1.532090 CGACTGCTCTGACGATACCAC 60.532 57.143 0.00 0.00 0.00 4.16
6297 8096 0.733150 CGACTGCTCTGACGATACCA 59.267 55.000 0.00 0.00 0.00 3.25
6298 8097 0.029567 CCGACTGCTCTGACGATACC 59.970 60.000 0.00 0.00 0.00 2.73
6299 8098 0.029567 CCCGACTGCTCTGACGATAC 59.970 60.000 0.00 0.00 0.00 2.24
6300 8099 0.393944 ACCCGACTGCTCTGACGATA 60.394 55.000 0.00 0.00 0.00 2.92
6301 8100 1.251527 AACCCGACTGCTCTGACGAT 61.252 55.000 0.00 0.00 0.00 3.73
6307 8106 1.882989 GCTCTGAACCCGACTGCTCT 61.883 60.000 0.00 0.00 0.00 4.09
6311 8110 1.079543 CCAGCTCTGAACCCGACTG 60.080 63.158 0.00 0.00 0.00 3.51
6312 8111 1.228894 TCCAGCTCTGAACCCGACT 60.229 57.895 0.00 0.00 0.00 4.18
6533 8344 4.949856 TCTCTTTATTAAGGGCAGCAAAGG 59.050 41.667 0.00 0.00 31.52 3.11
6609 8420 6.413892 TCATCTTACAATTGTGATACCTGCA 58.586 36.000 21.42 0.00 0.00 4.41
6622 8433 5.878332 TGCATTGACGTTCATCTTACAAT 57.122 34.783 0.00 0.00 0.00 2.71
6627 8438 3.189287 GGACTTGCATTGACGTTCATCTT 59.811 43.478 0.00 0.00 0.00 2.40
6628 8439 2.744202 GGACTTGCATTGACGTTCATCT 59.256 45.455 0.00 0.00 0.00 2.90
6629 8440 2.483877 TGGACTTGCATTGACGTTCATC 59.516 45.455 0.00 0.00 0.00 2.92
6677 8489 6.644248 GGAAGTTCCCAGTTAGCTTTAAAA 57.356 37.500 11.17 0.00 0.00 1.52
6695 8507 4.405358 TCAAGCAAGTCAAATTTGGGAAGT 59.595 37.500 17.90 0.00 0.00 3.01
6700 8512 4.202141 TGAGGTCAAGCAAGTCAAATTTGG 60.202 41.667 17.90 3.24 0.00 3.28
6750 8562 5.369699 AGGCCTTGTTAATCCTTGCTAGATA 59.630 40.000 0.00 0.00 0.00 1.98
6830 8642 0.307760 GACAGTTTGGCAAGGACACG 59.692 55.000 0.00 0.00 0.00 4.49
6841 8653 6.036953 GGCTCTAATCTTGATGAGACAGTTTG 59.963 42.308 0.00 0.00 37.17 2.93
6863 8675 5.014860 TGAATGATAGATGGGATGAATGGCT 59.985 40.000 0.00 0.00 0.00 4.75
6984 8822 7.432838 CGAAAGTCTAGTTTGAGAACTATAGCC 59.567 40.741 0.00 0.00 44.91 3.93
7027 8866 0.321653 GACAAGGCCGTCCAAGACAT 60.322 55.000 0.00 0.00 32.09 3.06
7102 8941 1.340405 GGACTGGCTGGTCACATTGAT 60.340 52.381 11.77 0.00 37.91 2.57
7177 9016 1.351017 GGATATCGAATCCCCTTGGCA 59.649 52.381 12.85 0.00 32.09 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.