Multiple sequence alignment - TraesCS2D01G103900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G103900 chr2D 100.000 4312 0 0 1 4312 56108167 56112478 0.000000e+00 7963.0
1 TraesCS2D01G103900 chr2D 94.326 141 6 2 2646 2785 536091014 536091153 9.390000e-52 215.0
2 TraesCS2D01G103900 chr2D 94.118 51 3 0 237 287 484880850 484880900 1.290000e-10 78.7
3 TraesCS2D01G103900 chr2A 91.449 1415 61 23 2938 4312 57699420 57700814 0.000000e+00 1888.0
4 TraesCS2D01G103900 chr2A 87.145 1408 139 23 1292 2662 57697921 57699323 0.000000e+00 1559.0
5 TraesCS2D01G103900 chr2A 82.077 597 83 17 1 582 57549990 57550577 5.010000e-134 488.0
6 TraesCS2D01G103900 chr2A 81.976 577 51 27 726 1258 57696986 57697553 1.420000e-119 440.0
7 TraesCS2D01G103900 chr2A 96.154 78 2 1 2821 2898 57699349 57699425 4.530000e-25 126.0
8 TraesCS2D01G103900 chr2B 91.667 1308 79 11 1367 2662 88846129 88847418 0.000000e+00 1784.0
9 TraesCS2D01G103900 chr2B 90.449 869 46 14 3283 4129 88847995 88848848 0.000000e+00 1110.0
10 TraesCS2D01G103900 chr2B 94.632 503 17 6 2783 3283 88847414 88847908 0.000000e+00 771.0
11 TraesCS2D01G103900 chr2B 87.463 670 67 12 2004 2661 4567774 4567110 0.000000e+00 756.0
12 TraesCS2D01G103900 chr2B 86.111 504 34 18 836 1320 88845530 88846016 1.070000e-140 510.0
13 TraesCS2D01G103900 chr2B 81.667 300 40 8 1428 1720 406247662 406247371 7.210000e-58 235.0
14 TraesCS2D01G103900 chr2B 98.214 112 2 0 4201 4312 88848848 88848959 3.400000e-46 196.0
15 TraesCS2D01G103900 chr7D 81.787 862 109 27 1779 2606 471236820 471237667 0.000000e+00 678.0
16 TraesCS2D01G103900 chr7D 83.178 321 32 10 1375 1684 471236490 471236799 1.530000e-69 274.0
17 TraesCS2D01G103900 chr7D 92.568 148 7 3 2656 2802 498465398 498465254 4.370000e-50 209.0
18 TraesCS2D01G103900 chr7D 100.000 34 0 0 778 811 602207501 602207534 3.600000e-06 63.9
19 TraesCS2D01G103900 chr7B 84.497 587 68 16 2081 2649 495171602 495172183 3.770000e-155 558.0
20 TraesCS2D01G103900 chr7B 74.214 318 53 21 403 705 242721902 242722205 5.900000e-19 106.0
21 TraesCS2D01G103900 chr3D 81.250 304 40 10 1424 1720 609891714 609891421 3.350000e-56 230.0
22 TraesCS2D01G103900 chr3D 96.324 136 4 1 2656 2790 8128030 8128165 5.610000e-54 222.0
23 TraesCS2D01G103900 chr7A 97.727 132 3 0 2658 2789 442265754 442265885 1.210000e-55 228.0
24 TraesCS2D01G103900 chr7A 79.268 164 28 5 547 709 143100184 143100026 4.560000e-20 110.0
25 TraesCS2D01G103900 chr7A 80.702 114 15 6 597 705 172975000 172975111 9.940000e-12 82.4
26 TraesCS2D01G103900 chrUn 97.710 131 3 0 2655 2785 74542132 74542262 4.340000e-55 226.0
27 TraesCS2D01G103900 chr6A 97.674 129 3 0 2659 2787 32749188 32749060 5.610000e-54 222.0
28 TraesCS2D01G103900 chr6A 76.316 190 32 12 546 726 604441478 604441293 5.940000e-14 89.8
29 TraesCS2D01G103900 chr1B 96.970 132 4 0 2657 2788 623732113 623731982 5.610000e-54 222.0
30 TraesCS2D01G103900 chr1D 93.662 142 9 0 2654 2795 453291584 453291725 3.380000e-51 213.0
31 TraesCS2D01G103900 chr5A 91.946 149 11 1 2655 2803 131187625 131187478 1.570000e-49 207.0
32 TraesCS2D01G103900 chr6B 73.714 350 64 26 389 720 184791976 184791637 1.270000e-20 111.0
33 TraesCS2D01G103900 chr6D 73.077 338 61 26 389 705 100685079 100684751 4.590000e-15 93.5
34 TraesCS2D01G103900 chr4D 97.619 42 1 0 664 705 88090714 88090673 5.980000e-09 73.1
35 TraesCS2D01G103900 chr4D 88.462 52 6 0 234 285 62307554 62307605 3.600000e-06 63.9
36 TraesCS2D01G103900 chr5B 90.385 52 5 0 237 288 652961271 652961220 7.740000e-08 69.4
37 TraesCS2D01G103900 chr5B 92.683 41 3 0 664 704 267904782 267904822 4.660000e-05 60.2
38 TraesCS2D01G103900 chr5D 71.034 290 67 14 444 725 237832526 237832246 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G103900 chr2D 56108167 56112478 4311 False 7963.00 7963 100.0000 1 4312 1 chr2D.!!$F1 4311
1 TraesCS2D01G103900 chr2A 57696986 57700814 3828 False 1003.25 1888 89.1810 726 4312 4 chr2A.!!$F2 3586
2 TraesCS2D01G103900 chr2A 57549990 57550577 587 False 488.00 488 82.0770 1 582 1 chr2A.!!$F1 581
3 TraesCS2D01G103900 chr2B 88845530 88848959 3429 False 874.20 1784 92.2146 836 4312 5 chr2B.!!$F1 3476
4 TraesCS2D01G103900 chr2B 4567110 4567774 664 True 756.00 756 87.4630 2004 2661 1 chr2B.!!$R1 657
5 TraesCS2D01G103900 chr7D 471236490 471237667 1177 False 476.00 678 82.4825 1375 2606 2 chr7D.!!$F2 1231
6 TraesCS2D01G103900 chr7B 495171602 495172183 581 False 558.00 558 84.4970 2081 2649 1 chr7B.!!$F2 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 729 0.042100 GCAAGAAATAGCGCGGCTAC 60.042 55.0 8.83 0.00 44.24 3.58 F
700 731 0.179119 AAGAAATAGCGCGGCTACGT 60.179 50.0 8.83 0.00 44.24 3.57 F
701 732 0.179119 AGAAATAGCGCGGCTACGTT 60.179 50.0 8.83 7.96 44.24 3.99 F
1707 2207 0.601558 TGGGAACTGACAGCGACTAC 59.398 55.0 1.25 0.00 0.00 2.73 F
2674 3235 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 2188 0.601558 GTAGTCGCTGTCAGTTCCCA 59.398 55.000 0.93 0.00 0.00 4.37 R
1707 2207 1.115467 ACTATCGAGGCACCTCTTGG 58.885 55.000 14.58 6.71 40.69 3.61 R
2662 3223 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30 R
2767 3328 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
3638 4308 0.170116 GCATCGCCAATTTTGACGGA 59.830 50.000 0.00 0.00 34.72 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.178521 GTCGCGCTCCTTCGAAGA 59.821 61.111 26.61 11.39 36.41 2.87
40 41 0.580578 CTCCTTCGAAGATGCATGCG 59.419 55.000 26.61 5.31 35.04 4.73
52 53 3.659092 CATGCGTTGCGGTGGTGT 61.659 61.111 0.00 0.00 0.00 4.16
68 69 2.040947 TGGTGTCAAATAGACCATGCCA 59.959 45.455 0.00 0.00 46.22 4.92
75 76 5.415701 GTCAAATAGACCATGCCAAAAGAGA 59.584 40.000 0.00 0.00 41.56 3.10
80 81 3.265221 AGACCATGCCAAAAGAGAGATCA 59.735 43.478 0.00 0.00 0.00 2.92
83 84 2.865119 TGCCAAAAGAGAGATCAGCA 57.135 45.000 0.00 0.00 0.00 4.41
84 85 2.708051 TGCCAAAAGAGAGATCAGCAG 58.292 47.619 0.00 0.00 0.00 4.24
110 111 1.662044 CCTTTGCGCAAGAAAGGCT 59.338 52.632 22.69 0.00 42.92 4.58
111 112 0.665369 CCTTTGCGCAAGAAAGGCTG 60.665 55.000 22.69 4.03 42.92 4.85
112 113 0.665369 CTTTGCGCAAGAAAGGCTGG 60.665 55.000 23.68 2.89 35.31 4.85
118 119 0.962855 GCAAGAAAGGCTGGGAGTCC 60.963 60.000 0.00 0.00 0.00 3.85
126 127 1.997874 GCTGGGAGTCCTGGATGGT 60.998 63.158 9.58 0.00 37.07 3.55
133 134 1.555075 GAGTCCTGGATGGTTGTAGCA 59.445 52.381 0.00 0.00 37.07 3.49
134 135 2.171448 GAGTCCTGGATGGTTGTAGCAT 59.829 50.000 0.00 0.00 39.30 3.79
145 146 3.007074 TGGTTGTAGCATACCAGTCGAAA 59.993 43.478 0.00 0.00 42.12 3.46
147 148 4.142966 GGTTGTAGCATACCAGTCGAAAAC 60.143 45.833 0.00 0.00 42.12 2.43
155 156 3.144285 AGTCGAAAACTGGGGCGA 58.856 55.556 0.00 0.00 36.65 5.54
183 184 1.218047 GCGACATAGTGGTGAGCCA 59.782 57.895 0.00 0.00 43.73 4.75
204 205 1.337071 GCACCATGCAAGGATCTCATG 59.663 52.381 16.33 2.09 44.26 3.07
206 207 1.214673 ACCATGCAAGGATCTCATGCT 59.785 47.619 16.33 0.00 40.66 3.79
207 208 2.440627 ACCATGCAAGGATCTCATGCTA 59.559 45.455 16.33 6.20 40.66 3.49
235 236 1.816863 GAGAGAGGACGCAACCCACA 61.817 60.000 0.00 0.00 0.00 4.17
237 238 3.041940 GAGGACGCAACCCACACG 61.042 66.667 0.00 0.00 0.00 4.49
264 265 0.457166 CGTATGCGGACGGTTTGAGA 60.457 55.000 0.00 0.00 39.19 3.27
265 266 1.801395 CGTATGCGGACGGTTTGAGAT 60.801 52.381 0.00 0.00 39.19 2.75
270 271 1.693083 CGGACGGTTTGAGATTCGGC 61.693 60.000 0.00 0.00 0.00 5.54
287 288 3.403936 GCGTTGGAGATGCCCTAAT 57.596 52.632 0.00 0.00 34.03 1.73
288 289 1.680338 GCGTTGGAGATGCCCTAATT 58.320 50.000 0.00 0.00 34.03 1.40
292 293 3.487372 GTTGGAGATGCCCTAATTACCC 58.513 50.000 0.00 0.00 34.97 3.69
302 304 2.112998 CCTAATTACCCGGTCACCTCA 58.887 52.381 0.00 0.00 0.00 3.86
306 308 1.189524 TTACCCGGTCACCTCACCAG 61.190 60.000 0.00 0.00 36.01 4.00
311 313 1.254026 CGGTCACCTCACCAGTTCTA 58.746 55.000 0.00 0.00 36.01 2.10
314 316 3.676324 CGGTCACCTCACCAGTTCTAATC 60.676 52.174 0.00 0.00 36.01 1.75
323 325 5.087323 TCACCAGTTCTAATCACTTCTCCT 58.913 41.667 0.00 0.00 0.00 3.69
403 412 9.973450 TTTCATGAATCTTTTCAAAATCCGTAA 57.027 25.926 9.40 0.00 44.70 3.18
637 668 9.623687 GTTCTGATTTGTTTCAAATTTTCTTCG 57.376 29.630 8.72 0.00 0.00 3.79
638 669 7.840489 TCTGATTTGTTTCAAATTTTCTTCGC 58.160 30.769 8.72 0.00 0.00 4.70
639 670 7.490725 TCTGATTTGTTTCAAATTTTCTTCGCA 59.509 29.630 8.72 0.95 0.00 5.10
640 671 8.140677 TGATTTGTTTCAAATTTTCTTCGCAT 57.859 26.923 8.72 0.00 0.00 4.73
641 672 8.063038 TGATTTGTTTCAAATTTTCTTCGCATG 58.937 29.630 8.72 0.00 0.00 4.06
642 673 6.900568 TTGTTTCAAATTTTCTTCGCATGT 57.099 29.167 0.00 0.00 0.00 3.21
643 674 6.900568 TGTTTCAAATTTTCTTCGCATGTT 57.099 29.167 0.00 0.00 0.00 2.71
644 675 7.301068 TGTTTCAAATTTTCTTCGCATGTTT 57.699 28.000 0.00 0.00 0.00 2.83
645 676 7.746929 TGTTTCAAATTTTCTTCGCATGTTTT 58.253 26.923 0.00 0.00 0.00 2.43
646 677 7.902403 TGTTTCAAATTTTCTTCGCATGTTTTC 59.098 29.630 0.00 0.00 0.00 2.29
647 678 6.523676 TCAAATTTTCTTCGCATGTTTTCC 57.476 33.333 0.00 0.00 0.00 3.13
648 679 6.045318 TCAAATTTTCTTCGCATGTTTTCCA 58.955 32.000 0.00 0.00 0.00 3.53
649 680 6.536582 TCAAATTTTCTTCGCATGTTTTCCAA 59.463 30.769 0.00 0.00 0.00 3.53
650 681 6.917217 AATTTTCTTCGCATGTTTTCCAAA 57.083 29.167 0.00 0.00 0.00 3.28
651 682 6.917217 ATTTTCTTCGCATGTTTTCCAAAA 57.083 29.167 0.00 0.00 0.00 2.44
652 683 6.727824 TTTTCTTCGCATGTTTTCCAAAAA 57.272 29.167 0.00 0.00 0.00 1.94
684 715 9.545105 AAAAATTTCTGAAATGTATGTGCAAGA 57.455 25.926 15.80 0.00 0.00 3.02
685 716 9.545105 AAAATTTCTGAAATGTATGTGCAAGAA 57.455 25.926 15.80 0.00 0.00 2.52
686 717 9.545105 AAATTTCTGAAATGTATGTGCAAGAAA 57.455 25.926 15.80 5.60 0.00 2.52
687 718 9.715121 AATTTCTGAAATGTATGTGCAAGAAAT 57.285 25.926 15.80 8.98 34.88 2.17
689 720 9.844790 TTTCTGAAATGTATGTGCAAGAAATAG 57.155 29.630 0.00 0.00 0.00 1.73
690 721 7.475015 TCTGAAATGTATGTGCAAGAAATAGC 58.525 34.615 0.00 0.00 0.00 2.97
691 722 6.257423 TGAAATGTATGTGCAAGAAATAGCG 58.743 36.000 0.00 0.00 0.00 4.26
692 723 3.673746 TGTATGTGCAAGAAATAGCGC 57.326 42.857 0.00 0.00 41.40 5.92
693 724 2.030335 TGTATGTGCAAGAAATAGCGCG 59.970 45.455 0.00 0.00 43.81 6.86
694 725 0.378257 ATGTGCAAGAAATAGCGCGG 59.622 50.000 8.83 0.00 43.81 6.46
695 726 1.583709 GTGCAAGAAATAGCGCGGC 60.584 57.895 8.83 0.00 0.00 6.53
696 727 1.745115 TGCAAGAAATAGCGCGGCT 60.745 52.632 8.83 8.38 43.41 5.52
697 728 0.461163 TGCAAGAAATAGCGCGGCTA 60.461 50.000 8.83 10.58 45.55 3.93
698 729 0.042100 GCAAGAAATAGCGCGGCTAC 60.042 55.000 8.83 0.00 44.24 3.58
699 730 0.229753 CAAGAAATAGCGCGGCTACG 59.770 55.000 8.83 0.00 44.24 3.51
700 731 0.179119 AAGAAATAGCGCGGCTACGT 60.179 50.000 8.83 0.00 44.24 3.57
701 732 0.179119 AGAAATAGCGCGGCTACGTT 60.179 50.000 8.83 7.96 44.24 3.99
702 733 0.648958 GAAATAGCGCGGCTACGTTT 59.351 50.000 8.83 8.33 44.24 3.60
703 734 1.061566 GAAATAGCGCGGCTACGTTTT 59.938 47.619 8.83 7.66 44.24 2.43
704 735 1.925229 AATAGCGCGGCTACGTTTTA 58.075 45.000 8.83 0.00 44.24 1.52
705 736 2.144482 ATAGCGCGGCTACGTTTTAT 57.856 45.000 8.83 0.00 44.24 1.40
706 737 2.772568 TAGCGCGGCTACGTTTTATA 57.227 45.000 8.83 0.00 43.45 0.98
707 738 1.203065 AGCGCGGCTACGTTTTATAC 58.797 50.000 8.83 0.00 43.45 1.47
708 739 1.202336 AGCGCGGCTACGTTTTATACT 60.202 47.619 8.83 0.00 43.45 2.12
709 740 1.589779 GCGCGGCTACGTTTTATACTT 59.410 47.619 8.83 0.00 43.45 2.24
710 741 2.347016 GCGCGGCTACGTTTTATACTTC 60.347 50.000 8.83 0.00 43.45 3.01
711 742 3.111098 CGCGGCTACGTTTTATACTTCT 58.889 45.455 0.00 0.00 43.45 2.85
712 743 3.179206 CGCGGCTACGTTTTATACTTCTC 59.821 47.826 0.00 0.00 43.45 2.87
713 744 4.107622 GCGGCTACGTTTTATACTTCTCA 58.892 43.478 0.00 0.00 43.45 3.27
714 745 4.743644 GCGGCTACGTTTTATACTTCTCAT 59.256 41.667 0.00 0.00 43.45 2.90
715 746 5.332355 GCGGCTACGTTTTATACTTCTCATG 60.332 44.000 0.00 0.00 43.45 3.07
716 747 5.332355 CGGCTACGTTTTATACTTCTCATGC 60.332 44.000 0.00 0.00 34.81 4.06
717 748 5.753921 GGCTACGTTTTATACTTCTCATGCT 59.246 40.000 0.00 0.00 0.00 3.79
718 749 6.292381 GGCTACGTTTTATACTTCTCATGCTG 60.292 42.308 0.00 0.00 0.00 4.41
719 750 6.255887 GCTACGTTTTATACTTCTCATGCTGT 59.744 38.462 0.00 0.00 0.00 4.40
720 751 6.408858 ACGTTTTATACTTCTCATGCTGTG 57.591 37.500 0.00 0.00 0.00 3.66
721 752 6.163476 ACGTTTTATACTTCTCATGCTGTGA 58.837 36.000 0.00 0.00 35.05 3.58
722 753 6.818644 ACGTTTTATACTTCTCATGCTGTGAT 59.181 34.615 0.00 0.00 35.97 3.06
723 754 7.010552 ACGTTTTATACTTCTCATGCTGTGATC 59.989 37.037 0.00 0.00 35.97 2.92
724 755 7.010460 CGTTTTATACTTCTCATGCTGTGATCA 59.990 37.037 0.00 0.00 35.97 2.92
746 779 1.530720 GGCAACGGGAGCAAATTTTTG 59.469 47.619 0.00 0.00 41.03 2.44
748 781 2.142319 CAACGGGAGCAAATTTTTGGG 58.858 47.619 5.28 0.00 38.57 4.12
755 788 4.065088 GGAGCAAATTTTTGGGAGGTTTC 58.935 43.478 5.28 0.00 38.57 2.78
759 792 4.306600 CAAATTTTTGGGAGGTTTCTCGG 58.693 43.478 0.00 0.00 40.85 4.63
768 801 2.074576 GAGGTTTCTCGGGCTACAAAC 58.925 52.381 0.00 0.00 0.00 2.93
771 804 2.817844 GGTTTCTCGGGCTACAAACATT 59.182 45.455 0.46 0.00 31.52 2.71
776 809 1.164411 CGGGCTACAAACATTCTGCA 58.836 50.000 0.00 0.00 0.00 4.41
826 859 3.861263 GGATTTCCGCGTGCCGTC 61.861 66.667 4.92 0.00 34.38 4.79
827 860 4.204891 GATTTCCGCGTGCCGTCG 62.205 66.667 4.92 0.00 34.38 5.12
858 891 2.479730 CGTATCCTGCTGCTTTACGAGT 60.480 50.000 14.39 0.00 38.25 4.18
912 960 0.762418 TTCAGGAGGAAACTTGCGGA 59.238 50.000 0.00 0.00 44.43 5.54
941 989 1.550976 CCATATTCCGCTACTCCCTCC 59.449 57.143 0.00 0.00 0.00 4.30
956 1004 7.893302 GCTACTCCCTCCTCAGCATATATATAT 59.107 40.741 0.00 0.00 32.46 0.86
975 1023 5.710513 ATATATAGGACGTACCGCAAACA 57.289 39.130 0.00 0.00 44.74 2.83
976 1024 2.288961 ATAGGACGTACCGCAAACAG 57.711 50.000 0.00 0.00 44.74 3.16
978 1026 1.005867 GGACGTACCGCAAACAGGA 60.006 57.895 0.00 0.00 0.00 3.86
979 1027 1.012486 GGACGTACCGCAAACAGGAG 61.012 60.000 0.00 0.00 0.00 3.69
981 1029 0.606604 ACGTACCGCAAACAGGAGAT 59.393 50.000 0.00 0.00 0.00 2.75
983 1031 2.190981 CGTACCGCAAACAGGAGATAC 58.809 52.381 0.00 0.00 0.00 2.24
984 1032 2.416296 CGTACCGCAAACAGGAGATACA 60.416 50.000 0.00 0.00 0.00 2.29
992 1057 5.446473 CGCAAACAGGAGATACAATCAGAAC 60.446 44.000 0.00 0.00 0.00 3.01
1056 1121 0.820871 CTGAAACCCTCTCCCTCTCG 59.179 60.000 0.00 0.00 0.00 4.04
1182 1257 5.122554 GGTGAGCTACTAGGCTTTTTCTTTC 59.877 44.000 0.00 0.00 43.20 2.62
1220 1299 1.880340 GAGCTTAGATGCACGCGCT 60.880 57.895 5.73 0.00 39.64 5.92
1270 1645 9.683069 GTTCCGTCGGAGTATATTTTATTTAGA 57.317 33.333 14.79 0.00 31.21 2.10
1320 1742 4.345257 TGAACTGTGAACTTCTTCTAGGCT 59.655 41.667 0.00 0.00 0.00 4.58
1322 1744 5.297569 ACTGTGAACTTCTTCTAGGCTTT 57.702 39.130 0.00 0.00 0.00 3.51
1324 1746 5.760743 ACTGTGAACTTCTTCTAGGCTTTTC 59.239 40.000 0.00 0.00 0.00 2.29
1325 1747 5.930135 TGTGAACTTCTTCTAGGCTTTTCT 58.070 37.500 0.00 0.00 0.00 2.52
1328 1750 5.760253 TGAACTTCTTCTAGGCTTTTCTGTG 59.240 40.000 0.00 0.00 0.00 3.66
1330 1752 6.420913 ACTTCTTCTAGGCTTTTCTGTGTA 57.579 37.500 0.00 0.00 0.00 2.90
1332 1754 6.042208 ACTTCTTCTAGGCTTTTCTGTGTAGT 59.958 38.462 0.00 0.00 0.00 2.73
1334 1756 7.159322 TCTTCTAGGCTTTTCTGTGTAGTAG 57.841 40.000 0.00 0.00 0.00 2.57
1335 1757 5.326200 TCTAGGCTTTTCTGTGTAGTAGC 57.674 43.478 0.00 0.00 0.00 3.58
1373 1861 6.017109 AGCGTTCATTTATAATCATGGTCACC 60.017 38.462 0.00 0.00 0.00 4.02
1380 1868 4.989279 ATAATCATGGTCACCAAAGTGC 57.011 40.909 0.00 0.00 44.16 4.40
1404 1892 2.872245 TCCAAAAGTTGAAGTGAGCTCG 59.128 45.455 9.64 0.00 0.00 5.03
1423 1911 1.741394 CGGTATTCTTCCGGGGTGAAC 60.741 57.143 0.00 0.00 43.68 3.18
1459 1951 5.209818 ACTCATAAACACTTGAAGACCGA 57.790 39.130 0.00 0.00 0.00 4.69
1468 1960 4.881850 ACACTTGAAGACCGAAAACTGAAT 59.118 37.500 0.00 0.00 0.00 2.57
1471 1963 5.357032 ACTTGAAGACCGAAAACTGAATTGT 59.643 36.000 0.00 0.00 0.00 2.71
1472 1964 5.168526 TGAAGACCGAAAACTGAATTGTG 57.831 39.130 0.00 0.00 0.00 3.33
1484 1977 9.589111 GAAAACTGAATTGTGGGTTTTACTTTA 57.411 29.630 0.00 0.00 40.46 1.85
1607 2107 2.607187 TCTTTCCTCTTCGTGAATCGC 58.393 47.619 0.00 0.00 39.67 4.58
1665 2165 6.857437 TCAGATCATCAAACTGTAGAGGAA 57.143 37.500 0.00 0.00 33.93 3.36
1688 2188 5.574188 AGAAGAAGGCATTGTAATTGGAGT 58.426 37.500 0.00 0.00 0.00 3.85
1707 2207 0.601558 TGGGAACTGACAGCGACTAC 59.398 55.000 1.25 0.00 0.00 2.73
1727 2227 2.307768 CCAAGAGGTGCCTCGATAGTA 58.692 52.381 12.10 0.00 46.90 1.82
1732 2232 4.076394 AGAGGTGCCTCGATAGTATCTTC 58.924 47.826 12.10 0.00 46.90 2.87
1733 2233 3.821600 GAGGTGCCTCGATAGTATCTTCA 59.178 47.826 8.49 0.00 33.06 3.02
1734 2234 4.411927 AGGTGCCTCGATAGTATCTTCAT 58.588 43.478 8.49 0.00 37.40 2.57
1735 2235 4.835615 AGGTGCCTCGATAGTATCTTCATT 59.164 41.667 8.49 0.00 37.40 2.57
1832 2342 5.047306 TGGATAGAGTGTTCAACATTCTCGT 60.047 40.000 18.15 9.27 40.54 4.18
1860 2370 3.118482 ACAATCCAGATCTCGCTGTGAAT 60.118 43.478 0.00 0.00 34.06 2.57
1869 2379 4.377839 TCTCGCTGTGAATAGAGGAAAG 57.622 45.455 0.00 0.00 0.00 2.62
1885 2395 3.011708 AGGAAAGATGGTTATGTGCCCTT 59.988 43.478 0.00 0.00 0.00 3.95
1889 2399 4.696479 AGATGGTTATGTGCCCTTCTAG 57.304 45.455 0.00 0.00 34.48 2.43
1905 2415 4.389264 CCTTCTAGGATTCTTAGGGAGGGT 60.389 50.000 13.58 0.00 37.67 4.34
1941 2451 6.811665 CAGTATTCGTGAACTTTATGGAGTCA 59.188 38.462 0.00 0.00 0.00 3.41
1959 2469 9.325529 ATGGAGTCATGTAAAACGTGTGTTTCC 62.326 40.741 0.00 4.15 38.56 3.13
2027 2555 8.023021 ACTAACCATCTGCAAATCTACATCTA 57.977 34.615 0.00 0.00 0.00 1.98
2185 2714 6.097554 CAGGAGATACATCAGTAAGTGTCCTT 59.902 42.308 0.00 0.00 31.72 3.36
2186 2715 6.097554 AGGAGATACATCAGTAAGTGTCCTTG 59.902 42.308 0.00 0.00 30.76 3.61
2211 2740 9.770097 TGTCCAATTTCATTGCTTTAATGTTTA 57.230 25.926 0.00 0.00 45.17 2.01
2221 2750 5.907207 TGCTTTAATGTTTAAAGTGTGCCA 58.093 33.333 16.78 7.05 37.00 4.92
2339 2868 6.029431 TGTAAGGGCCATGATACCACTATAT 58.971 40.000 6.18 0.00 0.00 0.86
2445 2993 5.841810 TGTTTCCTTCCACATGATTTGTTC 58.158 37.500 0.00 0.00 36.00 3.18
2447 2995 6.127225 TGTTTCCTTCCACATGATTTGTTCAA 60.127 34.615 0.00 0.00 38.03 2.69
2662 3223 5.740569 TGTTAATAGTTCGTCGCATGTACTC 59.259 40.000 0.00 0.00 0.00 2.59
2663 3224 2.838386 TAGTTCGTCGCATGTACTCC 57.162 50.000 0.00 0.00 0.00 3.85
2666 3227 0.454600 TTCGTCGCATGTACTCCCTC 59.545 55.000 0.00 0.00 0.00 4.30
2668 3229 1.065928 GTCGCATGTACTCCCTCCG 59.934 63.158 0.00 0.00 0.00 4.63
2670 3231 1.065928 CGCATGTACTCCCTCCGTC 59.934 63.158 0.00 0.00 0.00 4.79
2671 3232 1.442148 GCATGTACTCCCTCCGTCC 59.558 63.158 0.00 0.00 0.00 4.79
2672 3233 2.029307 GCATGTACTCCCTCCGTCCC 62.029 65.000 0.00 0.00 0.00 4.46
2673 3234 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2674 3235 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2675 3236 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2676 3237 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2677 3238 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2678 3239 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2679 3240 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2680 3241 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2681 3242 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2682 3243 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2683 3244 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2684 3245 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2685 3246 2.488153 CTCCGTCCCAAAATTCTTGTCC 59.512 50.000 0.00 0.00 0.00 4.02
2686 3247 2.107552 TCCGTCCCAAAATTCTTGTCCT 59.892 45.455 0.00 0.00 0.00 3.85
2687 3248 3.328343 TCCGTCCCAAAATTCTTGTCCTA 59.672 43.478 0.00 0.00 0.00 2.94
2688 3249 3.689649 CCGTCCCAAAATTCTTGTCCTAG 59.310 47.826 0.00 0.00 0.00 3.02
2689 3250 4.564821 CCGTCCCAAAATTCTTGTCCTAGA 60.565 45.833 0.00 0.00 0.00 2.43
2690 3251 5.186198 CGTCCCAAAATTCTTGTCCTAGAT 58.814 41.667 0.00 0.00 0.00 1.98
2691 3252 5.648092 CGTCCCAAAATTCTTGTCCTAGATT 59.352 40.000 0.00 0.00 0.00 2.40
2692 3253 6.151144 CGTCCCAAAATTCTTGTCCTAGATTT 59.849 38.462 0.00 0.00 0.00 2.17
2693 3254 7.315890 GTCCCAAAATTCTTGTCCTAGATTTG 58.684 38.462 0.00 0.00 29.84 2.32
2694 3255 7.010160 TCCCAAAATTCTTGTCCTAGATTTGT 58.990 34.615 0.00 0.00 28.79 2.83
2695 3256 7.176690 TCCCAAAATTCTTGTCCTAGATTTGTC 59.823 37.037 0.00 0.00 28.79 3.18
2696 3257 7.177392 CCCAAAATTCTTGTCCTAGATTTGTCT 59.823 37.037 0.00 0.00 28.79 3.41
2697 3258 9.231297 CCAAAATTCTTGTCCTAGATTTGTCTA 57.769 33.333 0.00 0.00 28.79 2.59
2718 3279 9.764363 TGTCTAAATATGGATGTATCAAGTCAC 57.236 33.333 0.00 0.00 0.00 3.67
2719 3280 8.916654 GTCTAAATATGGATGTATCAAGTCACG 58.083 37.037 0.00 0.00 0.00 4.35
2720 3281 8.638873 TCTAAATATGGATGTATCAAGTCACGT 58.361 33.333 0.00 0.00 0.00 4.49
2721 3282 9.261180 CTAAATATGGATGTATCAAGTCACGTT 57.739 33.333 0.00 0.00 0.00 3.99
2722 3283 8.506168 AAATATGGATGTATCAAGTCACGTTT 57.494 30.769 0.00 0.00 0.00 3.60
2723 3284 8.506168 AATATGGATGTATCAAGTCACGTTTT 57.494 30.769 0.00 0.00 0.00 2.43
2724 3285 9.607988 AATATGGATGTATCAAGTCACGTTTTA 57.392 29.630 0.00 0.00 0.00 1.52
2725 3286 6.961359 TGGATGTATCAAGTCACGTTTTAG 57.039 37.500 0.00 0.00 0.00 1.85
2726 3287 6.460781 TGGATGTATCAAGTCACGTTTTAGT 58.539 36.000 0.00 0.00 0.00 2.24
2727 3288 7.604549 TGGATGTATCAAGTCACGTTTTAGTA 58.395 34.615 0.00 0.00 0.00 1.82
2728 3289 8.255206 TGGATGTATCAAGTCACGTTTTAGTAT 58.745 33.333 0.00 0.00 0.00 2.12
2729 3290 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
2739 3300 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
2740 3301 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
2741 3302 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
2742 3303 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
2760 3321 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
2761 3322 9.529325 CATCCGTATCTAGACAAATTTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
2763 3324 9.932207 TCCGTATCTAGACAAATTTAAGACAAA 57.068 29.630 0.00 0.00 0.00 2.83
2775 3336 9.432077 CAAATTTAAGACAAAAATTTTGGGACG 57.568 29.630 20.79 0.00 41.45 4.79
2776 3337 7.722795 ATTTAAGACAAAAATTTTGGGACGG 57.277 32.000 20.79 0.00 0.00 4.79
2777 3338 6.466885 TTAAGACAAAAATTTTGGGACGGA 57.533 33.333 20.79 1.94 0.00 4.69
2778 3339 4.584327 AGACAAAAATTTTGGGACGGAG 57.416 40.909 20.79 0.00 0.00 4.63
2779 3340 3.320826 AGACAAAAATTTTGGGACGGAGG 59.679 43.478 20.79 0.00 0.00 4.30
2780 3341 2.367241 ACAAAAATTTTGGGACGGAGGG 59.633 45.455 20.79 0.00 0.00 4.30
2781 3342 2.630580 CAAAAATTTTGGGACGGAGGGA 59.369 45.455 10.41 0.00 0.00 4.20
2782 3343 2.215942 AAATTTTGGGACGGAGGGAG 57.784 50.000 0.00 0.00 0.00 4.30
2783 3344 1.073098 AATTTTGGGACGGAGGGAGT 58.927 50.000 0.00 0.00 0.00 3.85
2784 3345 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2785 3346 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2786 3347 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
2906 3467 5.649782 AATCTGGTTTCTTGGTGCATTAG 57.350 39.130 0.00 0.00 0.00 1.73
2939 3500 6.212888 AGGCTAAAATGGTTGTGATCATTC 57.787 37.500 0.00 0.00 33.03 2.67
3029 3590 2.046023 TCTGAATGTGCCCTGCCG 60.046 61.111 0.00 0.00 0.00 5.69
3150 3712 4.737055 GCCAAAACTCTAGATCGTCTACCC 60.737 50.000 0.00 0.00 0.00 3.69
3156 3718 2.570752 TCTAGATCGTCTACCCCGCTAT 59.429 50.000 0.00 0.00 0.00 2.97
3238 3802 4.450122 GCTGTGACGCGGCACATG 62.450 66.667 44.70 35.50 46.64 3.21
3348 4000 8.463930 TCTACCAATTCAAAATGACAGAGTTT 57.536 30.769 0.00 0.00 0.00 2.66
3349 4001 8.912988 TCTACCAATTCAAAATGACAGAGTTTT 58.087 29.630 0.00 0.00 0.00 2.43
3359 4011 8.846211 CAAAATGACAGAGTTTTAGTCCCTTTA 58.154 33.333 0.00 0.00 0.00 1.85
3448 4113 0.510359 GCAACAGACAGTGAGCGAAG 59.490 55.000 0.00 0.00 0.00 3.79
3475 4141 1.851658 AAAATTGTGCGCACTGGTTC 58.148 45.000 37.59 14.25 0.00 3.62
3493 4159 0.759959 TCCGGGTGCACTGAACTTAA 59.240 50.000 17.98 0.00 0.00 1.85
3527 4193 2.107953 GCTAGAGCTTGAGGCCGG 59.892 66.667 0.00 0.00 43.05 6.13
3638 4308 3.254014 GAGCGCGTTTGTGTGGCAT 62.254 57.895 8.43 0.00 0.00 4.40
3661 4339 1.391144 GTCAAAATTGGCGATGCAAGC 59.609 47.619 8.80 8.80 0.00 4.01
3698 4376 1.786937 TGGATCTCTCCAGCTTCCTC 58.213 55.000 0.34 0.00 46.95 3.71
3699 4377 1.047801 GGATCTCTCCAGCTTCCTCC 58.952 60.000 0.00 0.00 41.64 4.30
3700 4378 0.673437 GATCTCTCCAGCTTCCTCCG 59.327 60.000 0.00 0.00 0.00 4.63
3701 4379 0.758685 ATCTCTCCAGCTTCCTCCGG 60.759 60.000 0.00 0.00 0.00 5.14
3702 4380 1.684049 CTCTCCAGCTTCCTCCGGT 60.684 63.158 0.00 0.00 0.00 5.28
3703 4381 1.229209 TCTCCAGCTTCCTCCGGTT 60.229 57.895 0.00 0.00 0.00 4.44
3704 4382 1.078848 CTCCAGCTTCCTCCGGTTG 60.079 63.158 0.00 0.00 0.00 3.77
3705 4383 1.535444 TCCAGCTTCCTCCGGTTGA 60.535 57.895 0.00 0.00 0.00 3.18
3754 4446 3.281727 ACTTCTTTGTGGAGCAACTGA 57.718 42.857 0.00 0.00 36.72 3.41
3766 4458 5.413833 GTGGAGCAACTGATAATATGGGATG 59.586 44.000 0.00 0.00 0.00 3.51
3767 4459 4.397417 GGAGCAACTGATAATATGGGATGC 59.603 45.833 0.00 0.00 0.00 3.91
3768 4460 4.989277 AGCAACTGATAATATGGGATGCA 58.011 39.130 0.00 0.00 33.89 3.96
3769 4461 5.387788 AGCAACTGATAATATGGGATGCAA 58.612 37.500 0.00 0.00 33.89 4.08
3770 4462 6.014647 AGCAACTGATAATATGGGATGCAAT 58.985 36.000 0.00 0.00 33.89 3.56
3810 4504 4.898861 TCTTAAGTGGGCAATTTTGTTCCT 59.101 37.500 1.63 0.00 0.00 3.36
3841 4535 8.677300 TGTTTTATTTGGAAGATCTCTACATGC 58.323 33.333 0.00 0.00 0.00 4.06
3852 4546 5.714333 AGATCTCTACATGCCACATAGGTAG 59.286 44.000 0.00 0.00 40.61 3.18
3876 4570 5.679792 GTGTTTGAATTGTAACCGAAGTGTC 59.320 40.000 0.00 0.00 0.00 3.67
3878 4572 5.917541 TTGAATTGTAACCGAAGTGTCTC 57.082 39.130 0.00 0.00 0.00 3.36
3879 4573 5.209818 TGAATTGTAACCGAAGTGTCTCT 57.790 39.130 0.00 0.00 0.00 3.10
3880 4574 6.335471 TGAATTGTAACCGAAGTGTCTCTA 57.665 37.500 0.00 0.00 0.00 2.43
3882 4576 5.717078 ATTGTAACCGAAGTGTCTCTACA 57.283 39.130 0.00 0.00 0.00 2.74
3883 4577 5.717078 TTGTAACCGAAGTGTCTCTACAT 57.283 39.130 0.00 0.00 38.08 2.29
3886 4584 5.924254 TGTAACCGAAGTGTCTCTACATTTG 59.076 40.000 0.00 0.00 35.85 2.32
3979 4677 7.768120 ACTTTAGCCATCTGATCAAAACTAGAG 59.232 37.037 0.00 2.61 0.00 2.43
4007 4705 4.847516 CGAAGGCGGTCGATGCGA 62.848 66.667 7.73 0.00 43.86 5.10
4057 4755 4.062293 GGGTTTGCCAAGAAATTAACCAC 58.938 43.478 0.00 0.00 37.38 4.16
4147 4860 5.192522 CCCCTATCAGATTGGCCATAAGTAT 59.807 44.000 6.09 0.00 0.00 2.12
4196 4909 4.207429 GCTCTAAAGATAAAAGCTCCGACG 59.793 45.833 0.00 0.00 0.00 5.12
4246 4959 6.037391 CAGCGTCGGGGACTATAAAATTAAAA 59.963 38.462 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.095919 GTCTATTTGACACCACCGCAAC 60.096 50.000 0.00 0.00 44.73 4.17
52 53 5.569355 TCTCTTTTGGCATGGTCTATTTGA 58.431 37.500 0.00 0.00 0.00 2.69
63 64 3.280295 CTGCTGATCTCTCTTTTGGCAT 58.720 45.455 0.00 0.00 0.00 4.40
66 67 3.269178 GGACTGCTGATCTCTCTTTTGG 58.731 50.000 0.00 0.00 0.00 3.28
68 69 4.577875 CTTGGACTGCTGATCTCTCTTTT 58.422 43.478 0.00 0.00 0.00 2.27
75 76 0.913451 AGGGCTTGGACTGCTGATCT 60.913 55.000 0.00 0.00 0.00 2.75
80 81 1.905354 GCAAAGGGCTTGGACTGCT 60.905 57.895 0.00 0.00 40.25 4.24
83 84 2.985847 GCGCAAAGGGCTTGGACT 60.986 61.111 0.30 0.00 41.67 3.85
84 85 2.753931 CTTGCGCAAAGGGCTTGGAC 62.754 60.000 25.01 0.00 42.10 4.02
104 105 0.551131 ATCCAGGACTCCCAGCCTTT 60.551 55.000 0.00 0.00 30.41 3.11
110 111 0.475632 ACAACCATCCAGGACTCCCA 60.476 55.000 0.00 0.00 41.22 4.37
111 112 1.486726 CTACAACCATCCAGGACTCCC 59.513 57.143 0.00 0.00 41.22 4.30
112 113 1.134371 GCTACAACCATCCAGGACTCC 60.134 57.143 0.00 0.00 41.22 3.85
118 119 3.118261 ACTGGTATGCTACAACCATCCAG 60.118 47.826 0.00 0.00 44.56 3.86
126 127 4.890088 AGTTTTCGACTGGTATGCTACAA 58.110 39.130 0.00 0.00 37.17 2.41
138 139 0.602905 CTTCGCCCCAGTTTTCGACT 60.603 55.000 0.00 0.00 39.89 4.18
160 161 1.040893 TCACCACTATGTCGCCGGAT 61.041 55.000 5.05 0.00 0.00 4.18
166 167 0.807667 GCTGGCTCACCACTATGTCG 60.808 60.000 0.00 0.00 42.67 4.35
168 169 0.036010 GTGCTGGCTCACCACTATGT 60.036 55.000 0.00 0.00 42.67 2.29
169 170 2.772739 GTGCTGGCTCACCACTATG 58.227 57.895 0.00 0.00 42.67 2.23
183 184 0.622136 TGAGATCCTTGCATGGTGCT 59.378 50.000 17.54 15.04 45.31 4.40
188 189 3.075148 CCTAGCATGAGATCCTTGCATG 58.925 50.000 17.93 14.06 45.34 4.06
201 202 3.573598 CTCTCTCGCATAACCTAGCATG 58.426 50.000 0.00 0.00 0.00 4.06
204 205 2.030628 GTCCTCTCTCGCATAACCTAGC 60.031 54.545 0.00 0.00 0.00 3.42
206 207 2.219458 CGTCCTCTCTCGCATAACCTA 58.781 52.381 0.00 0.00 0.00 3.08
207 208 1.025812 CGTCCTCTCTCGCATAACCT 58.974 55.000 0.00 0.00 0.00 3.50
235 236 4.183686 CGCATACGTCCGGACCGT 62.184 66.667 28.52 27.58 42.06 4.83
241 242 3.688475 AACCGTCCGCATACGTCCG 62.688 63.158 0.00 0.00 41.27 4.79
264 265 1.819632 GGCATCTCCAACGCCGAAT 60.820 57.895 0.00 0.00 35.79 3.34
265 266 2.435938 GGCATCTCCAACGCCGAA 60.436 61.111 0.00 0.00 35.79 4.30
270 271 3.139077 GGTAATTAGGGCATCTCCAACG 58.861 50.000 0.00 0.00 36.21 4.10
282 283 2.112998 TGAGGTGACCGGGTAATTAGG 58.887 52.381 6.32 0.00 0.00 2.69
287 288 1.152290 TGGTGAGGTGACCGGGTAA 60.152 57.895 6.32 0.00 39.07 2.85
288 289 1.608336 CTGGTGAGGTGACCGGGTA 60.608 63.158 6.32 0.00 38.57 3.69
292 293 1.254026 TAGAACTGGTGAGGTGACCG 58.746 55.000 0.00 0.00 39.07 4.79
302 304 6.441088 AAAGGAGAAGTGATTAGAACTGGT 57.559 37.500 0.00 0.00 0.00 4.00
382 391 9.810545 AAAAGTTACGGATTTTGAAAAGATTCA 57.189 25.926 0.00 0.00 43.70 2.57
611 642 9.623687 CGAAGAAAATTTGAAACAAATCAGAAC 57.376 29.630 9.60 2.68 0.00 3.01
612 643 8.327429 GCGAAGAAAATTTGAAACAAATCAGAA 58.673 29.630 9.60 0.00 0.00 3.02
613 644 7.490725 TGCGAAGAAAATTTGAAACAAATCAGA 59.509 29.630 9.60 0.00 0.00 3.27
614 645 7.620215 TGCGAAGAAAATTTGAAACAAATCAG 58.380 30.769 9.60 0.73 0.00 2.90
615 646 7.531280 TGCGAAGAAAATTTGAAACAAATCA 57.469 28.000 9.60 0.35 0.00 2.57
616 647 8.063630 ACATGCGAAGAAAATTTGAAACAAATC 58.936 29.630 9.60 0.59 0.00 2.17
617 648 7.918643 ACATGCGAAGAAAATTTGAAACAAAT 58.081 26.923 4.22 4.22 0.00 2.32
618 649 7.301068 ACATGCGAAGAAAATTTGAAACAAA 57.699 28.000 0.00 0.00 0.00 2.83
619 650 6.900568 ACATGCGAAGAAAATTTGAAACAA 57.099 29.167 0.00 0.00 0.00 2.83
620 651 6.900568 AACATGCGAAGAAAATTTGAAACA 57.099 29.167 0.00 0.00 0.00 2.83
621 652 7.373180 GGAAAACATGCGAAGAAAATTTGAAAC 59.627 33.333 0.00 0.00 0.00 2.78
622 653 7.065085 TGGAAAACATGCGAAGAAAATTTGAAA 59.935 29.630 0.00 0.00 0.00 2.69
623 654 6.536582 TGGAAAACATGCGAAGAAAATTTGAA 59.463 30.769 0.00 0.00 0.00 2.69
624 655 6.045318 TGGAAAACATGCGAAGAAAATTTGA 58.955 32.000 0.00 0.00 0.00 2.69
625 656 6.284475 TGGAAAACATGCGAAGAAAATTTG 57.716 33.333 0.00 0.00 0.00 2.32
626 657 6.917217 TTGGAAAACATGCGAAGAAAATTT 57.083 29.167 0.00 0.00 0.00 1.82
627 658 6.917217 TTTGGAAAACATGCGAAGAAAATT 57.083 29.167 0.00 0.00 0.00 1.82
628 659 6.917217 TTTTGGAAAACATGCGAAGAAAAT 57.083 29.167 0.00 0.00 0.00 1.82
629 660 6.727824 TTTTTGGAAAACATGCGAAGAAAA 57.272 29.167 0.00 0.00 0.00 2.29
658 689 9.545105 TCTTGCACATACATTTCAGAAATTTTT 57.455 25.926 5.58 0.00 0.00 1.94
659 690 9.545105 TTCTTGCACATACATTTCAGAAATTTT 57.455 25.926 5.58 0.00 0.00 1.82
660 691 9.545105 TTTCTTGCACATACATTTCAGAAATTT 57.455 25.926 5.58 2.73 0.00 1.82
661 692 9.715121 ATTTCTTGCACATACATTTCAGAAATT 57.285 25.926 5.58 1.53 30.99 1.82
663 694 9.844790 CTATTTCTTGCACATACATTTCAGAAA 57.155 29.630 0.00 0.00 0.00 2.52
664 695 7.970061 GCTATTTCTTGCACATACATTTCAGAA 59.030 33.333 0.00 0.00 0.00 3.02
665 696 7.475015 GCTATTTCTTGCACATACATTTCAGA 58.525 34.615 0.00 0.00 0.00 3.27
666 697 6.412943 CGCTATTTCTTGCACATACATTTCAG 59.587 38.462 0.00 0.00 0.00 3.02
667 698 6.257423 CGCTATTTCTTGCACATACATTTCA 58.743 36.000 0.00 0.00 0.00 2.69
668 699 5.172053 GCGCTATTTCTTGCACATACATTTC 59.828 40.000 0.00 0.00 0.00 2.17
669 700 5.036737 GCGCTATTTCTTGCACATACATTT 58.963 37.500 0.00 0.00 0.00 2.32
670 701 4.601019 GCGCTATTTCTTGCACATACATT 58.399 39.130 0.00 0.00 0.00 2.71
671 702 3.303329 CGCGCTATTTCTTGCACATACAT 60.303 43.478 5.56 0.00 0.00 2.29
672 703 2.030335 CGCGCTATTTCTTGCACATACA 59.970 45.455 5.56 0.00 0.00 2.29
673 704 2.599848 CCGCGCTATTTCTTGCACATAC 60.600 50.000 5.56 0.00 0.00 2.39
674 705 1.597195 CCGCGCTATTTCTTGCACATA 59.403 47.619 5.56 0.00 0.00 2.29
675 706 0.378257 CCGCGCTATTTCTTGCACAT 59.622 50.000 5.56 0.00 0.00 3.21
676 707 1.793581 CCGCGCTATTTCTTGCACA 59.206 52.632 5.56 0.00 0.00 4.57
677 708 1.583709 GCCGCGCTATTTCTTGCAC 60.584 57.895 5.56 0.00 0.00 4.57
678 709 0.461163 TAGCCGCGCTATTTCTTGCA 60.461 50.000 5.56 0.00 40.44 4.08
679 710 0.042100 GTAGCCGCGCTATTTCTTGC 60.042 55.000 5.56 0.00 43.30 4.01
680 711 0.229753 CGTAGCCGCGCTATTTCTTG 59.770 55.000 5.56 0.00 43.30 3.02
681 712 0.179119 ACGTAGCCGCGCTATTTCTT 60.179 50.000 5.56 0.00 43.30 2.52
682 713 0.179119 AACGTAGCCGCGCTATTTCT 60.179 50.000 5.56 0.00 43.30 2.52
683 714 0.648958 AAACGTAGCCGCGCTATTTC 59.351 50.000 5.56 0.00 43.30 2.17
684 715 1.081094 AAAACGTAGCCGCGCTATTT 58.919 45.000 5.56 2.25 43.30 1.40
685 716 1.925229 TAAAACGTAGCCGCGCTATT 58.075 45.000 5.56 0.35 43.30 1.73
686 717 2.144482 ATAAAACGTAGCCGCGCTAT 57.856 45.000 5.56 0.00 43.30 2.97
687 718 2.033299 AGTATAAAACGTAGCCGCGCTA 59.967 45.455 5.56 2.98 40.44 4.26
688 719 1.202336 AGTATAAAACGTAGCCGCGCT 60.202 47.619 5.56 4.15 43.41 5.92
689 720 1.203065 AGTATAAAACGTAGCCGCGC 58.797 50.000 0.00 0.00 37.70 6.86
690 721 3.111098 AGAAGTATAAAACGTAGCCGCG 58.889 45.455 0.00 0.00 37.70 6.46
691 722 4.107622 TGAGAAGTATAAAACGTAGCCGC 58.892 43.478 0.00 0.00 37.70 6.53
692 723 5.332355 GCATGAGAAGTATAAAACGTAGCCG 60.332 44.000 0.00 0.00 40.83 5.52
693 724 5.753921 AGCATGAGAAGTATAAAACGTAGCC 59.246 40.000 0.00 0.00 0.00 3.93
694 725 6.255887 ACAGCATGAGAAGTATAAAACGTAGC 59.744 38.462 0.00 0.00 39.69 3.58
695 726 7.488150 TCACAGCATGAGAAGTATAAAACGTAG 59.512 37.037 0.00 0.00 39.69 3.51
696 727 7.317390 TCACAGCATGAGAAGTATAAAACGTA 58.683 34.615 0.00 0.00 39.69 3.57
697 728 6.163476 TCACAGCATGAGAAGTATAAAACGT 58.837 36.000 0.00 0.00 39.69 3.99
698 729 6.647212 TCACAGCATGAGAAGTATAAAACG 57.353 37.500 0.00 0.00 39.69 3.60
699 730 8.201554 TGATCACAGCATGAGAAGTATAAAAC 57.798 34.615 0.00 0.00 39.65 2.43
700 731 8.791327 TTGATCACAGCATGAGAAGTATAAAA 57.209 30.769 0.00 0.00 39.65 1.52
701 732 7.496920 CCTTGATCACAGCATGAGAAGTATAAA 59.503 37.037 0.00 0.00 39.65 1.40
702 733 6.988580 CCTTGATCACAGCATGAGAAGTATAA 59.011 38.462 0.00 0.00 39.65 0.98
703 734 6.519382 CCTTGATCACAGCATGAGAAGTATA 58.481 40.000 0.00 0.00 39.65 1.47
704 735 5.366460 CCTTGATCACAGCATGAGAAGTAT 58.634 41.667 0.00 0.00 39.65 2.12
705 736 4.763073 CCTTGATCACAGCATGAGAAGTA 58.237 43.478 0.00 0.00 39.65 2.24
706 737 3.607741 CCTTGATCACAGCATGAGAAGT 58.392 45.455 0.00 0.00 39.65 3.01
707 738 2.355132 GCCTTGATCACAGCATGAGAAG 59.645 50.000 10.56 2.41 39.65 2.85
708 739 2.290450 TGCCTTGATCACAGCATGAGAA 60.290 45.455 13.50 0.00 39.65 2.87
709 740 1.279846 TGCCTTGATCACAGCATGAGA 59.720 47.619 13.50 0.00 41.91 3.27
710 741 1.746470 TGCCTTGATCACAGCATGAG 58.254 50.000 13.50 0.00 41.91 2.90
711 742 1.814394 GTTGCCTTGATCACAGCATGA 59.186 47.619 17.19 3.62 43.13 3.07
712 743 1.466866 CGTTGCCTTGATCACAGCATG 60.467 52.381 17.19 10.66 46.00 4.06
713 744 0.806868 CGTTGCCTTGATCACAGCAT 59.193 50.000 17.19 0.00 34.72 3.79
714 745 1.236616 CCGTTGCCTTGATCACAGCA 61.237 55.000 13.50 13.50 0.00 4.41
715 746 1.503542 CCGTTGCCTTGATCACAGC 59.496 57.895 8.85 8.85 0.00 4.40
716 747 0.321564 TCCCGTTGCCTTGATCACAG 60.322 55.000 0.00 0.00 0.00 3.66
717 748 0.321564 CTCCCGTTGCCTTGATCACA 60.322 55.000 0.00 0.00 0.00 3.58
718 749 1.648467 GCTCCCGTTGCCTTGATCAC 61.648 60.000 0.00 0.00 0.00 3.06
719 750 1.377202 GCTCCCGTTGCCTTGATCA 60.377 57.895 0.00 0.00 0.00 2.92
720 751 0.960364 TTGCTCCCGTTGCCTTGATC 60.960 55.000 0.00 0.00 0.00 2.92
721 752 0.539438 TTTGCTCCCGTTGCCTTGAT 60.539 50.000 0.00 0.00 0.00 2.57
722 753 0.539438 ATTTGCTCCCGTTGCCTTGA 60.539 50.000 0.00 0.00 0.00 3.02
723 754 0.318120 AATTTGCTCCCGTTGCCTTG 59.682 50.000 0.00 0.00 0.00 3.61
724 755 1.047801 AAATTTGCTCCCGTTGCCTT 58.952 45.000 0.00 0.00 0.00 4.35
746 779 1.262640 TGTAGCCCGAGAAACCTCCC 61.263 60.000 0.00 0.00 0.00 4.30
748 781 2.074576 GTTTGTAGCCCGAGAAACCTC 58.925 52.381 0.00 0.00 28.79 3.85
755 788 1.398390 GCAGAATGTTTGTAGCCCGAG 59.602 52.381 0.00 0.00 39.31 4.63
768 801 0.458669 GCCCAGGAACATGCAGAATG 59.541 55.000 0.00 0.00 42.48 2.67
771 804 2.356278 GGCCCAGGAACATGCAGA 59.644 61.111 0.00 0.00 0.00 4.26
831 864 1.060937 GCAGCAGGATACGTTTGCG 59.939 57.895 0.00 0.00 42.47 4.85
832 865 0.804989 AAGCAGCAGGATACGTTTGC 59.195 50.000 0.00 0.00 46.39 3.68
833 866 3.483574 CGTAAAGCAGCAGGATACGTTTG 60.484 47.826 0.00 0.00 46.39 2.93
834 867 2.671396 CGTAAAGCAGCAGGATACGTTT 59.329 45.455 0.00 0.00 46.39 3.60
873 917 8.421002 TCCTGAACCTTTTTCCTTTTTGATTAG 58.579 33.333 0.00 0.00 0.00 1.73
874 918 8.312669 TCCTGAACCTTTTTCCTTTTTGATTA 57.687 30.769 0.00 0.00 0.00 1.75
912 960 1.219522 GCGGAATATGGTAGCGCGTT 61.220 55.000 8.43 3.54 0.00 4.84
974 1022 3.722147 CGGGTTCTGATTGTATCTCCTG 58.278 50.000 0.00 0.00 0.00 3.86
975 1023 2.103263 GCGGGTTCTGATTGTATCTCCT 59.897 50.000 0.00 0.00 0.00 3.69
976 1024 2.484889 GCGGGTTCTGATTGTATCTCC 58.515 52.381 0.00 0.00 0.00 3.71
978 1026 1.754803 TCGCGGGTTCTGATTGTATCT 59.245 47.619 6.13 0.00 0.00 1.98
979 1027 2.128035 CTCGCGGGTTCTGATTGTATC 58.872 52.381 6.13 0.00 0.00 2.24
981 1029 1.179152 TCTCGCGGGTTCTGATTGTA 58.821 50.000 5.57 0.00 0.00 2.41
983 1031 1.212616 GATCTCGCGGGTTCTGATTG 58.787 55.000 5.57 0.00 0.00 2.67
984 1032 0.249073 CGATCTCGCGGGTTCTGATT 60.249 55.000 14.72 0.00 0.00 2.57
992 1057 1.540607 CGTCAAATCGATCTCGCGGG 61.541 60.000 6.13 1.01 39.60 6.13
1114 1185 4.180946 CGTCGTCGGCTCCTCCTG 62.181 72.222 0.00 0.00 0.00 3.86
1220 1299 4.631377 CGAATCATGAAAGTGGAGCTACAA 59.369 41.667 0.00 0.00 0.00 2.41
1270 1645 8.731591 AGCCCAGAAATCCAATTATATTGAAT 57.268 30.769 1.11 0.00 0.00 2.57
1355 1833 7.417797 GGCACTTTGGTGACCATGATTATAAAT 60.418 37.037 4.56 0.00 45.29 1.40
1361 1839 1.895131 GGCACTTTGGTGACCATGATT 59.105 47.619 4.56 0.00 45.29 2.57
1363 1841 3.034924 GGCACTTTGGTGACCATGA 57.965 52.632 4.56 0.00 45.29 3.07
1373 1861 4.057406 TCAACTTTTGGATGGCACTTTG 57.943 40.909 0.00 0.00 0.00 2.77
1380 1868 3.571401 AGCTCACTTCAACTTTTGGATGG 59.429 43.478 0.00 0.00 0.00 3.51
1404 1892 1.279846 TGTTCACCCCGGAAGAATACC 59.720 52.381 0.73 0.00 0.00 2.73
1423 1911 6.140737 GTGTTTATGAGTTCGCTTGTTTCTTG 59.859 38.462 0.00 0.00 0.00 3.02
1468 1960 6.939132 TGACGAATAAAGTAAAACCCACAA 57.061 33.333 0.00 0.00 0.00 3.33
1471 1963 5.473846 TGCATGACGAATAAAGTAAAACCCA 59.526 36.000 0.00 0.00 0.00 4.51
1472 1964 5.945155 TGCATGACGAATAAAGTAAAACCC 58.055 37.500 0.00 0.00 0.00 4.11
1484 1977 4.789012 ACCTGAAATTTGCATGACGAAT 57.211 36.364 0.00 0.00 33.45 3.34
1607 2107 1.659098 GATACGTCAAAACAGAGGCCG 59.341 52.381 0.00 0.00 0.00 6.13
1665 2165 5.416952 CACTCCAATTACAATGCCTTCTTCT 59.583 40.000 0.00 0.00 0.00 2.85
1688 2188 0.601558 GTAGTCGCTGTCAGTTCCCA 59.398 55.000 0.93 0.00 0.00 4.37
1707 2207 1.115467 ACTATCGAGGCACCTCTTGG 58.885 55.000 14.58 6.71 40.69 3.61
1743 2243 6.320494 ACACAAAGTCGCATGGTTTAATAA 57.680 33.333 0.00 0.00 0.00 1.40
1854 2364 7.770433 CACATAACCATCTTTCCTCTATTCACA 59.230 37.037 0.00 0.00 0.00 3.58
1860 2370 4.141482 GGGCACATAACCATCTTTCCTCTA 60.141 45.833 0.00 0.00 0.00 2.43
1869 2379 3.391296 TCCTAGAAGGGCACATAACCATC 59.609 47.826 0.00 0.00 35.59 3.51
1885 2395 4.202545 CGTACCCTCCCTAAGAATCCTAGA 60.203 50.000 0.00 0.00 0.00 2.43
1889 2399 2.892215 CTCGTACCCTCCCTAAGAATCC 59.108 54.545 0.00 0.00 0.00 3.01
1905 2415 4.256110 TCACGAATACTGTCTTCCTCGTA 58.744 43.478 0.00 0.00 37.42 3.43
2027 2555 2.590114 GGGTCCCTACGCAACCTGT 61.590 63.158 0.00 0.00 38.40 4.00
2221 2750 6.552008 TCAGGAAACCATTTGTTCTAGGAAT 58.448 36.000 0.00 0.00 35.67 3.01
2339 2868 2.704065 AGAAGAGACGGTTTTCCTTGGA 59.296 45.455 0.00 0.00 37.95 3.53
2445 2993 4.128643 AGCAAAATGTTTGACATGGGTTG 58.871 39.130 4.93 2.26 37.97 3.77
2447 2995 4.588528 AGTAGCAAAATGTTTGACATGGGT 59.411 37.500 4.93 0.00 37.97 4.51
2662 3223 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2663 3224 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2666 3227 2.514803 AGGACAAGAATTTTGGGACGG 58.485 47.619 0.00 0.00 0.00 4.79
2668 3229 7.039714 ACAAATCTAGGACAAGAATTTTGGGAC 60.040 37.037 0.00 0.00 33.04 4.46
2670 3231 7.177392 AGACAAATCTAGGACAAGAATTTTGGG 59.823 37.037 0.00 0.00 33.04 4.12
2671 3232 8.115490 AGACAAATCTAGGACAAGAATTTTGG 57.885 34.615 0.00 0.00 33.04 3.28
2692 3253 9.764363 GTGACTTGATACATCCATATTTAGACA 57.236 33.333 0.00 0.00 0.00 3.41
2693 3254 8.916654 CGTGACTTGATACATCCATATTTAGAC 58.083 37.037 0.00 0.00 0.00 2.59
2694 3255 8.638873 ACGTGACTTGATACATCCATATTTAGA 58.361 33.333 0.00 0.00 0.00 2.10
2695 3256 8.818141 ACGTGACTTGATACATCCATATTTAG 57.182 34.615 0.00 0.00 0.00 1.85
2696 3257 9.607988 AAACGTGACTTGATACATCCATATTTA 57.392 29.630 0.00 0.00 0.00 1.40
2697 3258 8.506168 AAACGTGACTTGATACATCCATATTT 57.494 30.769 0.00 0.00 0.00 1.40
2698 3259 8.506168 AAAACGTGACTTGATACATCCATATT 57.494 30.769 0.00 0.00 0.00 1.28
2699 3260 9.261180 CTAAAACGTGACTTGATACATCCATAT 57.739 33.333 0.00 0.00 0.00 1.78
2700 3261 8.255206 ACTAAAACGTGACTTGATACATCCATA 58.745 33.333 0.00 0.00 0.00 2.74
2701 3262 7.103641 ACTAAAACGTGACTTGATACATCCAT 58.896 34.615 0.00 0.00 0.00 3.41
2702 3263 6.460781 ACTAAAACGTGACTTGATACATCCA 58.539 36.000 0.00 0.00 0.00 3.41
2703 3264 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
2713 3274 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
2714 3275 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
2715 3276 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
2716 3277 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
2734 3295 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
2735 3296 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
2737 3298 9.932207 TTTGTCTTAAATTTGTCTAGATACGGA 57.068 29.630 0.00 0.00 0.00 4.69
2749 3310 9.432077 CGTCCCAAAATTTTTGTCTTAAATTTG 57.568 29.630 18.05 2.04 41.71 2.32
2750 3311 8.616942 CCGTCCCAAAATTTTTGTCTTAAATTT 58.383 29.630 18.05 0.00 43.39 1.82
2751 3312 7.988028 TCCGTCCCAAAATTTTTGTCTTAAATT 59.012 29.630 18.05 0.00 36.91 1.82
2752 3313 7.501844 TCCGTCCCAAAATTTTTGTCTTAAAT 58.498 30.769 18.05 0.00 0.00 1.40
2753 3314 6.875076 TCCGTCCCAAAATTTTTGTCTTAAA 58.125 32.000 18.05 0.69 0.00 1.52
2754 3315 6.461788 CCTCCGTCCCAAAATTTTTGTCTTAA 60.462 38.462 18.05 2.01 0.00 1.85
2755 3316 5.010213 CCTCCGTCCCAAAATTTTTGTCTTA 59.990 40.000 18.05 1.26 0.00 2.10
2756 3317 4.202212 CCTCCGTCCCAAAATTTTTGTCTT 60.202 41.667 18.05 0.00 0.00 3.01
2757 3318 3.320826 CCTCCGTCCCAAAATTTTTGTCT 59.679 43.478 18.05 0.00 0.00 3.41
2758 3319 3.554129 CCCTCCGTCCCAAAATTTTTGTC 60.554 47.826 18.05 9.04 0.00 3.18
2759 3320 2.367241 CCCTCCGTCCCAAAATTTTTGT 59.633 45.455 18.05 0.00 0.00 2.83
2760 3321 2.630580 TCCCTCCGTCCCAAAATTTTTG 59.369 45.455 13.76 13.76 0.00 2.44
2761 3322 2.897326 CTCCCTCCGTCCCAAAATTTTT 59.103 45.455 0.00 0.00 0.00 1.94
2762 3323 2.158370 ACTCCCTCCGTCCCAAAATTTT 60.158 45.455 0.00 0.00 0.00 1.82
2763 3324 1.427753 ACTCCCTCCGTCCCAAAATTT 59.572 47.619 0.00 0.00 0.00 1.82
2764 3325 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2765 3326 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2766 3327 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2767 3328 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2768 3329 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2769 3330 0.257039 GTAGTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2770 3331 0.550432 AGTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
2771 3332 2.433662 AAGTAGTACTCCCTCCGTCC 57.566 55.000 2.58 0.00 0.00 4.79
2772 3333 3.619419 AGAAAGTAGTACTCCCTCCGTC 58.381 50.000 2.58 0.00 0.00 4.79
2773 3334 3.735720 AGAAAGTAGTACTCCCTCCGT 57.264 47.619 2.58 0.00 0.00 4.69
2774 3335 5.402997 AAAAGAAAGTAGTACTCCCTCCG 57.597 43.478 2.58 0.00 0.00 4.63
2775 3336 9.736414 AAAATAAAAGAAAGTAGTACTCCCTCC 57.264 33.333 2.58 0.00 0.00 4.30
2906 3467 4.045636 CCATTTTAGCCTACAATGGTGC 57.954 45.455 17.81 0.00 41.43 5.01
3029 3590 6.972901 CCCACACTACAGAAAGAAAGAAAAAC 59.027 38.462 0.00 0.00 0.00 2.43
3128 3690 4.202131 GGGGTAGACGATCTAGAGTTTTGG 60.202 50.000 0.00 0.00 28.01 3.28
3150 3712 2.626266 TGTCTACACATGGGTATAGCGG 59.374 50.000 8.59 0.00 0.00 5.52
3174 3736 5.220567 GCGATGCAAAAAGGAAAAGAAAACA 60.221 36.000 0.00 0.00 0.00 2.83
3179 3741 3.724508 TGCGATGCAAAAAGGAAAAGA 57.275 38.095 0.00 0.00 34.76 2.52
3238 3802 9.566432 ACCTAGAAAATTAGTCATGATTCCATC 57.434 33.333 0.00 0.00 0.00 3.51
3289 3940 1.091771 GTCCCCATGACATGCTCACG 61.092 60.000 10.10 0.00 43.85 4.35
3349 4001 8.635328 GGAAAGTTTGAAACATTAAAGGGACTA 58.365 33.333 11.02 0.00 38.49 2.59
3359 4011 8.482128 TCAAGGTAATGGAAAGTTTGAAACATT 58.518 29.630 11.02 4.38 33.61 2.71
3411 4065 2.036387 TGCACGGCCTGTACTATACAT 58.964 47.619 0.00 0.00 38.15 2.29
3475 4141 0.872388 GTTAAGTTCAGTGCACCCGG 59.128 55.000 14.63 3.59 0.00 5.73
3524 4190 0.745845 CTCCATGAACTGAAGCCCGG 60.746 60.000 0.00 0.00 0.00 5.73
3525 4191 0.745845 CCTCCATGAACTGAAGCCCG 60.746 60.000 0.00 0.00 0.00 6.13
3526 4192 0.329596 ACCTCCATGAACTGAAGCCC 59.670 55.000 0.00 0.00 0.00 5.19
3527 4193 1.271597 ACACCTCCATGAACTGAAGCC 60.272 52.381 0.00 0.00 0.00 4.35
3556 4222 1.202830 ACGGTGTTGGCCTACATCAAA 60.203 47.619 26.73 0.85 31.02 2.69
3638 4308 0.170116 GCATCGCCAATTTTGACGGA 59.830 50.000 0.00 0.00 34.72 4.69
3695 4373 1.873903 CACAAGACTGTCAACCGGAGG 60.874 57.143 9.46 0.00 45.39 4.30
3696 4374 1.502231 CACAAGACTGTCAACCGGAG 58.498 55.000 9.46 0.00 31.64 4.63
3697 4375 0.531974 GCACAAGACTGTCAACCGGA 60.532 55.000 9.46 0.00 31.64 5.14
3698 4376 1.507141 GGCACAAGACTGTCAACCGG 61.507 60.000 10.88 0.00 31.64 5.28
3699 4377 0.813610 TGGCACAAGACTGTCAACCG 60.814 55.000 10.88 0.00 31.64 4.44
3700 4378 0.663153 GTGGCACAAGACTGTCAACC 59.337 55.000 13.86 4.36 44.16 3.77
3701 4379 1.378531 TGTGGCACAAGACTGTCAAC 58.621 50.000 19.74 0.00 44.16 3.18
3702 4380 2.121291 TTGTGGCACAAGACTGTCAA 57.879 45.000 28.09 3.70 44.16 3.18
3703 4381 2.016318 CTTTGTGGCACAAGACTGTCA 58.984 47.619 29.58 14.63 44.16 3.58
3704 4382 2.288666 TCTTTGTGGCACAAGACTGTC 58.711 47.619 29.58 0.00 44.16 3.51
3705 4383 2.418368 TCTTTGTGGCACAAGACTGT 57.582 45.000 29.58 0.00 44.16 3.55
3754 4446 8.338493 TGGTCTGATAATTGCATCCCATATTAT 58.662 33.333 0.00 0.00 0.00 1.28
3766 4458 6.259550 AGACTGTTTTGGTCTGATAATTGC 57.740 37.500 0.00 0.00 41.76 3.56
3767 4459 9.831737 CTTAAGACTGTTTTGGTCTGATAATTG 57.168 33.333 0.00 0.00 42.39 2.32
3768 4460 9.574516 ACTTAAGACTGTTTTGGTCTGATAATT 57.425 29.630 10.09 0.00 42.39 1.40
3769 4461 9.003658 CACTTAAGACTGTTTTGGTCTGATAAT 57.996 33.333 10.09 0.00 42.39 1.28
3770 4462 7.444183 CCACTTAAGACTGTTTTGGTCTGATAA 59.556 37.037 10.09 0.00 42.39 1.75
3810 4504 7.461749 AGAGATCTTCCAAATAAAACACCAGA 58.538 34.615 0.00 0.00 0.00 3.86
3841 4535 6.817765 ACAATTCAAACACTACCTATGTGG 57.182 37.500 0.00 0.00 39.52 4.17
3852 4546 5.575019 ACACTTCGGTTACAATTCAAACAC 58.425 37.500 2.73 0.00 0.00 3.32
3900 4598 8.266473 CCATCCAAATAAATCTGGAATTTTGGA 58.734 33.333 15.04 15.04 44.77 3.53
3911 4609 5.733676 GTTGGCAACCATCCAAATAAATCT 58.266 37.500 19.57 0.00 44.36 2.40
4003 4701 3.997319 CGACTGATCTTTTCATTCGCA 57.003 42.857 3.06 0.00 46.21 5.10
4007 4705 5.613358 GTCAACCGACTGATCTTTTCATT 57.387 39.130 0.00 0.00 39.22 2.57
4025 4723 2.151502 TGGCAAACCCTTGAAGTCAA 57.848 45.000 0.00 0.00 34.14 3.18
4036 4734 4.062293 GGTGGTTAATTTCTTGGCAAACC 58.938 43.478 0.00 4.67 37.48 3.27
4147 4860 2.890311 ACATTCGCCACAATTCCTTTCA 59.110 40.909 0.00 0.00 0.00 2.69
4196 4909 4.440880 CTGATCCACACTTGATCTTCCTC 58.559 47.826 0.00 0.00 39.48 3.71
4246 4959 0.312416 GGTGATAGCTCGCATCGACT 59.688 55.000 0.00 0.00 33.36 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.