Multiple sequence alignment - TraesCS2D01G102200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G102200 chr2D 100.000 3198 0 0 1 3198 55238211 55235014 0.000000e+00 5906.0
1 TraesCS2D01G102200 chr2D 88.770 1211 70 32 1282 2463 55256179 55255006 0.000000e+00 1423.0
2 TraesCS2D01G102200 chr2D 86.295 1131 74 38 1 1100 55257292 55256212 0.000000e+00 1155.0
3 TraesCS2D01G102200 chr2D 89.394 66 3 3 3122 3187 552573345 552573284 2.640000e-11 80.5
4 TraesCS2D01G102200 chr2A 92.129 2668 124 32 10 2632 55969006 55966380 0.000000e+00 3685.0
5 TraesCS2D01G102200 chr2A 87.596 2733 159 64 36 2700 56102965 56100345 0.000000e+00 3003.0
6 TraesCS2D01G102200 chr2A 88.056 427 31 10 2703 3115 55966237 55965817 3.710000e-134 488.0
7 TraesCS2D01G102200 chr2A 82.143 252 22 8 2697 2943 56099541 56099308 9.050000e-46 195.0
8 TraesCS2D01G102200 chr2A 83.333 90 9 5 3111 3198 777959346 777959261 9.510000e-11 78.7
9 TraesCS2D01G102200 chr2B 88.158 2525 158 62 10 2463 87412525 87410071 0.000000e+00 2876.0
10 TraesCS2D01G102200 chr1D 87.654 81 8 2 3108 3187 460184352 460184273 3.400000e-15 93.5
11 TraesCS2D01G102200 chr7A 88.889 72 7 1 3117 3187 90484264 90484193 1.580000e-13 87.9
12 TraesCS2D01G102200 chr7D 84.091 88 10 4 3111 3194 75962226 75962139 7.350000e-12 82.4
13 TraesCS2D01G102200 chr7D 84.337 83 9 3 3104 3186 634763956 634764034 9.510000e-11 78.7
14 TraesCS2D01G102200 chr3A 85.000 80 10 2 3108 3187 689110438 689110515 2.640000e-11 80.5
15 TraesCS2D01G102200 chr1A 85.714 77 9 2 3111 3186 468682431 468682506 2.640000e-11 80.5
16 TraesCS2D01G102200 chr3D 80.808 99 13 6 3101 3195 567213733 567213829 4.430000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G102200 chr2D 55235014 55238211 3197 True 5906.0 5906 100.0000 1 3198 1 chr2D.!!$R1 3197
1 TraesCS2D01G102200 chr2D 55255006 55257292 2286 True 1289.0 1423 87.5325 1 2463 2 chr2D.!!$R3 2462
2 TraesCS2D01G102200 chr2A 55965817 55969006 3189 True 2086.5 3685 90.0925 10 3115 2 chr2A.!!$R2 3105
3 TraesCS2D01G102200 chr2A 56099308 56102965 3657 True 1599.0 3003 84.8695 36 2943 2 chr2A.!!$R3 2907
4 TraesCS2D01G102200 chr2B 87410071 87412525 2454 True 2876.0 2876 88.1580 10 2463 1 chr2B.!!$R1 2453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 383 2.033793 TCGTCATCGAGCTCCATCC 58.966 57.895 8.47 0.0 41.35 3.51 F
1128 1206 1.272037 TGTTGATTCTCCTGCCATGCA 60.272 47.619 0.00 0.0 36.92 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1810 1.003233 GTTTGGGCTTCTCCTCGCT 60.003 57.895 0.0 0.0 34.39 4.93 R
2994 4051 0.321475 GAGCTGAGGTTGCTGCTTCT 60.321 55.000 0.0 0.0 42.14 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.771160 GGTCGCCCGTCTCATGGT 61.771 66.667 0.00 0.00 0.00 3.55
324 336 5.128335 ACCGAAACTCCGAAAGATATACCTT 59.872 40.000 0.00 0.00 0.00 3.50
342 354 2.411547 CCTTCACAGATCGCGTCAAAAC 60.412 50.000 5.77 0.00 0.00 2.43
371 383 2.033793 TCGTCATCGAGCTCCATCC 58.966 57.895 8.47 0.00 41.35 3.51
626 641 8.723942 ATGCTTAAACTACTGATTAGGTCTTG 57.276 34.615 0.00 0.00 31.13 3.02
865 900 4.012895 CGTGACCACAAGCGTGCC 62.013 66.667 0.00 0.00 42.17 5.01
866 901 4.012895 GTGACCACAAGCGTGCCG 62.013 66.667 0.00 0.00 42.17 5.69
900 950 7.584108 TGCAACAATGATATATTTCTTAGGCG 58.416 34.615 0.00 0.00 0.00 5.52
982 1037 2.156310 GCGATTAAACGTTCGTTGGAGT 59.844 45.455 11.24 0.50 37.66 3.85
1059 1133 2.158058 GCGTTCAATTTTGCATGCATGT 59.842 40.909 26.79 7.72 36.54 3.21
1060 1138 3.727518 CGTTCAATTTTGCATGCATGTG 58.272 40.909 26.79 16.33 0.00 3.21
1094 1172 2.778299 TGGAAGTTGTAGTGATGGTGC 58.222 47.619 0.00 0.00 0.00 5.01
1128 1206 1.272037 TGTTGATTCTCCTGCCATGCA 60.272 47.619 0.00 0.00 36.92 3.96
1146 1224 3.044894 TGCATGTATCCACCAGGTATCA 58.955 45.455 0.00 0.00 35.89 2.15
1255 1338 8.936864 AGTACAATAGTCAAGCACTCAATTTAC 58.063 33.333 0.00 0.00 36.43 2.01
1333 1416 8.963130 TCATTTTGTGTTTCGCTTATTAACTTG 58.037 29.630 0.00 0.00 0.00 3.16
1334 1417 6.741448 TTTGTGTTTCGCTTATTAACTTGC 57.259 33.333 0.00 0.00 0.00 4.01
1622 1720 2.461695 AGCCGGATGAGAAGAAGAAGA 58.538 47.619 5.05 0.00 0.00 2.87
1666 1764 6.381133 AGGAAAAGAAGCAGGAAGAAAAGAAA 59.619 34.615 0.00 0.00 0.00 2.52
1702 1800 5.120986 GGAAGAAAAGAAGAAGACGGATGAC 59.879 44.000 0.00 0.00 0.00 3.06
1709 1810 4.524714 AGAAGAAGACGGATGACAAGAAGA 59.475 41.667 0.00 0.00 0.00 2.87
1834 1935 1.612442 GAGCCACTGGGGAGGTGTA 60.612 63.158 0.00 0.00 40.01 2.90
2489 2644 6.758593 TGTTTTAAATAGCCGTCTATAGCG 57.241 37.500 8.90 8.90 34.53 4.26
2512 2676 2.481969 CGCTATAGCAGTTTGAGCAGGA 60.482 50.000 23.99 0.00 42.21 3.86
2529 2693 3.005554 CAGGATGCCGCTAAATGATAGG 58.994 50.000 0.00 0.00 0.00 2.57
2537 2701 5.601662 GCCGCTAAATGATAGGCTATATGA 58.398 41.667 7.08 0.00 44.06 2.15
2541 2705 7.928167 CCGCTAAATGATAGGCTATATGATTCA 59.072 37.037 7.08 1.11 0.00 2.57
2554 2718 8.171196 GGCTATATGATTCATGTACAATTGTCG 58.829 37.037 15.85 2.68 0.00 4.35
2555 2719 8.925700 GCTATATGATTCATGTACAATTGTCGA 58.074 33.333 15.85 2.91 0.00 4.20
2584 2748 9.461312 AAAGTTCTGAAATAGCATGTTATACCA 57.539 29.630 2.17 3.64 0.00 3.25
2611 2775 0.678048 AGCTGATTTGAAGGACCGCC 60.678 55.000 0.00 0.00 0.00 6.13
2612 2776 0.960364 GCTGATTTGAAGGACCGCCA 60.960 55.000 0.00 0.00 36.29 5.69
2613 2777 1.755179 CTGATTTGAAGGACCGCCAT 58.245 50.000 0.00 0.00 36.29 4.40
2648 2812 6.613755 ACCCGCTATTTAACACAATGATAC 57.386 37.500 0.00 0.00 0.00 2.24
2649 2813 6.354130 ACCCGCTATTTAACACAATGATACT 58.646 36.000 0.00 0.00 0.00 2.12
2670 2834 1.064240 TGTAGAGGGTCTCGGCATACA 60.064 52.381 0.00 0.00 35.36 2.29
2671 2835 2.029623 GTAGAGGGTCTCGGCATACAA 58.970 52.381 0.00 0.00 35.36 2.41
2701 2937 3.996825 GCAAATTCGCCACCTAGTG 57.003 52.632 0.00 0.00 0.00 2.74
2778 3821 1.290955 CGACTACGGGGAAGTTGCA 59.709 57.895 0.00 0.00 35.72 4.08
2801 3844 7.178274 TGCATAGTTTTATGATTTGGGTCAGTT 59.822 33.333 0.00 0.00 39.22 3.16
2842 3885 2.532235 TGATTACCAAATCGACGGACG 58.468 47.619 4.46 0.00 43.84 4.79
2843 3886 4.678574 ATTGATTACCAAATCGACGGACGA 60.679 41.667 4.88 4.88 43.84 4.20
2876 3919 5.163499 TCAATTTTGATGATGCAGCAGCATA 60.163 36.000 25.79 16.81 46.15 3.14
2877 3920 6.954837 TCAATTTTGATGATGCAGCAGCATAG 60.955 38.462 25.79 11.89 46.15 2.23
2896 3944 2.946785 AGTAGCTACGTAGGGCAAGAT 58.053 47.619 23.47 0.36 33.29 2.40
2910 3965 1.407979 GCAAGATCCATGGAGCAAAGG 59.592 52.381 30.59 17.24 32.23 3.11
2954 4009 0.687427 CCAAGGCCTATTGGGGGTTG 60.687 60.000 14.94 2.00 45.07 3.77
2994 4051 0.689055 CCTAGCTGCTGGGCATGATA 59.311 55.000 19.47 0.00 38.13 2.15
3007 4064 2.295885 GCATGATAGAAGCAGCAACCT 58.704 47.619 0.00 0.00 0.00 3.50
3077 4134 7.063662 ACAAAAGAAAATCAACAACCCGTTAAC 59.936 33.333 0.00 0.00 35.52 2.01
3081 4138 2.660670 TCAACAACCCGTTAACCCAT 57.339 45.000 0.00 0.00 35.52 4.00
3082 4139 2.231529 TCAACAACCCGTTAACCCATG 58.768 47.619 0.00 0.00 35.52 3.66
3087 4144 2.049767 CCCGTTAACCCATGGTGGC 61.050 63.158 11.73 0.00 35.34 5.01
3090 4147 0.738389 CGTTAACCCATGGTGGCATC 59.262 55.000 11.73 0.00 35.34 3.91
3092 4149 1.476488 GTTAACCCATGGTGGCATCAC 59.524 52.381 11.73 0.00 42.91 3.06
3097 4154 1.750778 CCCATGGTGGCATCACTTTAC 59.249 52.381 11.73 0.00 43.17 2.01
3107 4164 7.178274 TGGTGGCATCACTTTACAGAATAAATT 59.822 33.333 0.00 0.00 43.17 1.82
3109 4166 7.489113 GTGGCATCACTTTACAGAATAAATTGG 59.511 37.037 0.00 0.00 40.58 3.16
3153 4210 8.310122 AGAAATAATGAATTAGTGGCATTGGT 57.690 30.769 0.00 0.00 34.41 3.67
3154 4211 9.420118 AGAAATAATGAATTAGTGGCATTGGTA 57.580 29.630 0.00 0.00 34.41 3.25
3159 4216 6.952773 TGAATTAGTGGCATTGGTATTACC 57.047 37.500 5.87 5.87 39.22 2.85
3160 4217 5.830991 TGAATTAGTGGCATTGGTATTACCC 59.169 40.000 10.37 0.00 37.50 3.69
3161 4218 4.864483 TTAGTGGCATTGGTATTACCCA 57.136 40.909 10.37 0.00 37.50 4.51
3162 4219 3.971468 AGTGGCATTGGTATTACCCAT 57.029 42.857 10.37 1.99 37.50 4.00
3163 4220 4.264373 AGTGGCATTGGTATTACCCATT 57.736 40.909 10.37 0.00 37.50 3.16
3164 4221 5.396057 AGTGGCATTGGTATTACCCATTA 57.604 39.130 10.37 0.00 37.50 1.90
3165 4222 5.772004 AGTGGCATTGGTATTACCCATTAA 58.228 37.500 10.37 0.00 37.50 1.40
3166 4223 6.198639 AGTGGCATTGGTATTACCCATTAAA 58.801 36.000 10.37 0.00 37.50 1.52
3167 4224 6.670027 AGTGGCATTGGTATTACCCATTAAAA 59.330 34.615 10.37 0.00 37.50 1.52
3168 4225 6.759356 GTGGCATTGGTATTACCCATTAAAAC 59.241 38.462 10.37 0.00 37.50 2.43
3169 4226 5.980715 GGCATTGGTATTACCCATTAAAACG 59.019 40.000 10.37 0.00 37.50 3.60
3170 4227 6.183360 GGCATTGGTATTACCCATTAAAACGA 60.183 38.462 10.37 0.00 37.50 3.85
3171 4228 7.430441 GCATTGGTATTACCCATTAAAACGAT 58.570 34.615 10.37 0.00 37.50 3.73
3172 4229 7.923878 GCATTGGTATTACCCATTAAAACGATT 59.076 33.333 10.37 0.00 37.50 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.487313 ACTGATAACTGATTAACGTGCATTTA 57.513 30.769 0.00 0.00 0.00 1.40
211 212 0.175760 CTAGGCTGCGTACACATGGT 59.824 55.000 0.00 0.00 0.00 3.55
324 336 0.781787 CGTTTTGACGCGATCTGTGA 59.218 50.000 15.93 0.00 0.00 3.58
342 354 2.124320 ATGACGATTTGGGGGCCG 60.124 61.111 0.00 0.00 0.00 6.13
343 355 2.186826 CGATGACGATTTGGGGGCC 61.187 63.158 0.00 0.00 42.66 5.80
371 383 1.806511 CGTCACGTACGTACATGGAG 58.193 55.000 22.34 13.40 46.72 3.86
503 518 2.741211 GCAGTCGGTCCGGAAACC 60.741 66.667 5.23 3.35 35.86 3.27
515 530 1.060698 GACAAATAAGTCGCCGCAGTC 59.939 52.381 0.00 0.00 0.00 3.51
519 534 1.719709 GGGACAAATAAGTCGCCGC 59.280 57.895 0.00 0.00 43.36 6.53
626 641 2.294979 TGGCATCACATGAGCTTGATC 58.705 47.619 0.00 0.00 29.64 2.92
631 646 3.074094 AGGAATATGGCATCACATGAGCT 59.926 43.478 1.65 0.00 32.39 4.09
682 700 9.993881 CAAGAAAAGAACAAAAGTATAATTGCG 57.006 29.630 0.00 0.00 0.00 4.85
824 856 1.066858 AGATGACGTGGCAGTGGTTAG 60.067 52.381 0.00 0.00 0.00 2.34
900 950 6.205658 GGGACTCTTACTTAATCATGGCAATC 59.794 42.308 0.00 0.00 0.00 2.67
982 1037 4.087892 GGCTGGAGCTGAGGCGAA 62.088 66.667 0.00 0.00 44.37 4.70
1059 1133 5.163364 ACAACTTCCAAATTAACCATGCACA 60.163 36.000 0.00 0.00 0.00 4.57
1060 1138 5.296748 ACAACTTCCAAATTAACCATGCAC 58.703 37.500 0.00 0.00 0.00 4.57
1094 1172 4.514441 AGAATCAACACAAAGAGCTCACAG 59.486 41.667 17.77 7.13 0.00 3.66
1128 1206 8.038961 TCAACGTTGATACCTGGTGGATACAT 62.039 42.308 26.53 0.00 40.11 2.29
1146 1224 3.305335 GGTTGGCTTCAATGATCAACGTT 60.305 43.478 0.00 0.00 38.71 3.99
1277 1360 9.892130 CACTTCTTATTACAGGGTTAATTCTCT 57.108 33.333 0.00 0.00 0.00 3.10
1278 1361 9.110502 CCACTTCTTATTACAGGGTTAATTCTC 57.889 37.037 0.00 0.00 0.00 2.87
1279 1362 8.832735 TCCACTTCTTATTACAGGGTTAATTCT 58.167 33.333 0.00 0.00 0.00 2.40
1280 1363 9.628500 ATCCACTTCTTATTACAGGGTTAATTC 57.372 33.333 0.00 0.00 0.00 2.17
1333 1416 4.227512 TCCATCGATGTTAATTGCATGC 57.772 40.909 23.27 11.82 0.00 4.06
1334 1417 6.004408 TGATCCATCGATGTTAATTGCATG 57.996 37.500 23.27 4.79 0.00 4.06
1537 1620 2.352032 CGGCTTCTTCTCCTCGGGT 61.352 63.158 0.00 0.00 0.00 5.28
1622 1720 2.567049 CGGCTTCTTCTCGTCGGT 59.433 61.111 0.00 0.00 0.00 4.69
1652 1750 7.573968 TCTTTTCCTCTTTCTTTTCTTCCTG 57.426 36.000 0.00 0.00 0.00 3.86
1653 1751 7.286546 CCTTCTTTTCCTCTTTCTTTTCTTCCT 59.713 37.037 0.00 0.00 0.00 3.36
1654 1752 7.285629 TCCTTCTTTTCCTCTTTCTTTTCTTCC 59.714 37.037 0.00 0.00 0.00 3.46
1666 1764 7.578203 TCTTCTTTTCTTCCTTCTTTTCCTCT 58.422 34.615 0.00 0.00 0.00 3.69
1702 1800 1.639280 GCTTCTCCTCGCTCTTCTTG 58.361 55.000 0.00 0.00 0.00 3.02
1709 1810 1.003233 GTTTGGGCTTCTCCTCGCT 60.003 57.895 0.00 0.00 34.39 4.93
1834 1935 2.666098 GGGATGCGGGTACTGGTGT 61.666 63.158 0.00 0.00 33.56 4.16
2415 2570 7.888250 TTTAGTGCCCCAAAAATTGAATTTT 57.112 28.000 9.92 9.92 43.83 1.82
2416 2571 7.559533 ACTTTTAGTGCCCCAAAAATTGAATTT 59.440 29.630 0.00 0.00 0.00 1.82
2417 2572 7.059788 ACTTTTAGTGCCCCAAAAATTGAATT 58.940 30.769 0.00 0.00 0.00 2.17
2418 2573 6.600388 ACTTTTAGTGCCCCAAAAATTGAAT 58.400 32.000 0.00 0.00 0.00 2.57
2512 2676 2.867109 AGCCTATCATTTAGCGGCAT 57.133 45.000 1.45 0.00 43.07 4.40
2529 2693 8.925700 TCGACAATTGTACATGAATCATATAGC 58.074 33.333 11.95 0.00 0.00 2.97
2574 2738 6.918067 TCAGCTATAGCAGTGGTATAACAT 57.082 37.500 26.07 8.52 45.16 2.71
2575 2739 6.918067 ATCAGCTATAGCAGTGGTATAACA 57.082 37.500 26.07 3.82 45.16 2.41
2584 2748 5.363939 GTCCTTCAAATCAGCTATAGCAGT 58.636 41.667 26.07 8.92 45.16 4.40
2611 2775 5.643379 ATAGCGGGTTATGCCAAATAATG 57.357 39.130 0.00 0.00 39.65 1.90
2612 2776 6.664428 AAATAGCGGGTTATGCCAAATAAT 57.336 33.333 0.00 0.00 39.65 1.28
2613 2777 7.068348 TGTTAAATAGCGGGTTATGCCAAATAA 59.932 33.333 0.00 0.00 39.65 1.40
2648 2812 1.115467 ATGCCGAGACCCTCTACAAG 58.885 55.000 0.00 0.00 0.00 3.16
2649 2813 2.029623 GTATGCCGAGACCCTCTACAA 58.970 52.381 0.00 0.00 0.00 2.41
2701 2937 4.016706 CCCCTGACCGTGTCCACC 62.017 72.222 2.23 0.00 0.00 4.61
2710 3753 2.224159 TGAGTGGCTTCCCCTGACC 61.224 63.158 0.00 0.00 0.00 4.02
2712 3755 2.583441 CGTGAGTGGCTTCCCCTGA 61.583 63.158 0.00 0.00 0.00 3.86
2838 3881 5.757886 TCAAAATTGACTGACATTTCGTCC 58.242 37.500 0.00 0.00 36.65 4.79
2842 3885 7.329962 TGCATCATCAAAATTGACTGACATTTC 59.670 33.333 0.00 0.00 40.49 2.17
2843 3886 7.156000 TGCATCATCAAAATTGACTGACATTT 58.844 30.769 0.00 0.00 40.49 2.32
2875 3918 3.565764 TCTTGCCCTACGTAGCTACTA 57.434 47.619 21.20 11.49 0.00 1.82
2876 3919 2.431954 TCTTGCCCTACGTAGCTACT 57.568 50.000 21.20 10.98 0.00 2.57
2877 3920 2.030096 GGATCTTGCCCTACGTAGCTAC 60.030 54.545 17.41 14.19 0.00 3.58
2882 3930 1.691976 CCATGGATCTTGCCCTACGTA 59.308 52.381 5.56 0.00 0.00 3.57
2896 3944 1.304282 GCCTCCTTTGCTCCATGGA 59.696 57.895 15.27 15.27 0.00 3.41
2910 3965 3.807538 CCGTGCACATGCTGCCTC 61.808 66.667 18.64 8.98 46.51 4.70
2943 3998 2.321357 GGAGCCCCAACCCCCAATA 61.321 63.158 0.00 0.00 0.00 1.90
2954 4009 2.356667 CCTTCAAGGTGGAGCCCC 59.643 66.667 0.00 0.00 38.26 5.80
2974 4031 1.351080 ATCATGCCCAGCAGCTAGGT 61.351 55.000 8.84 0.00 43.65 3.08
2977 4034 1.720781 TCTATCATGCCCAGCAGCTA 58.279 50.000 0.00 0.00 43.65 3.32
2994 4051 0.321475 GAGCTGAGGTTGCTGCTTCT 60.321 55.000 0.00 0.00 42.14 2.85
3023 4080 1.696336 AGGCTTGAGTGCTCTCTTTGA 59.304 47.619 16.23 0.00 40.98 2.69
3057 4114 4.202131 TGGGTTAACGGGTTGTTGATTTTC 60.202 41.667 0.00 0.00 42.01 2.29
3077 4134 1.750778 GTAAAGTGATGCCACCATGGG 59.249 52.381 18.09 4.89 44.22 4.00
3081 4138 3.500448 TTCTGTAAAGTGATGCCACCA 57.500 42.857 0.00 0.00 44.22 4.17
3082 4139 6.509418 TTTATTCTGTAAAGTGATGCCACC 57.491 37.500 0.00 0.00 44.22 4.61
3127 4184 8.761689 ACCAATGCCACTAATTCATTATTTCTT 58.238 29.630 0.00 0.00 0.00 2.52
3128 4185 8.310122 ACCAATGCCACTAATTCATTATTTCT 57.690 30.769 0.00 0.00 0.00 2.52
3133 4190 9.073475 GGTAATACCAATGCCACTAATTCATTA 57.927 33.333 4.24 0.00 38.42 1.90
3134 4191 7.015195 GGGTAATACCAATGCCACTAATTCATT 59.985 37.037 12.03 0.00 41.02 2.57
3135 4192 6.493458 GGGTAATACCAATGCCACTAATTCAT 59.507 38.462 12.03 0.00 41.02 2.57
3136 4193 5.830991 GGGTAATACCAATGCCACTAATTCA 59.169 40.000 12.03 0.00 41.02 2.57
3137 4194 5.830991 TGGGTAATACCAATGCCACTAATTC 59.169 40.000 12.03 0.00 41.02 2.17
3138 4195 5.772004 TGGGTAATACCAATGCCACTAATT 58.228 37.500 12.03 0.00 41.02 1.40
3139 4196 5.396057 TGGGTAATACCAATGCCACTAAT 57.604 39.130 12.03 0.00 41.02 1.73
3140 4197 4.864483 TGGGTAATACCAATGCCACTAA 57.136 40.909 12.03 0.00 41.02 2.24
3141 4198 5.396057 AATGGGTAATACCAATGCCACTA 57.604 39.130 12.03 0.00 45.13 2.74
3142 4199 3.971468 ATGGGTAATACCAATGCCACT 57.029 42.857 12.03 0.00 45.13 4.00
3143 4200 6.472686 TTTAATGGGTAATACCAATGCCAC 57.527 37.500 12.03 0.00 45.13 5.01
3144 4201 6.405953 CGTTTTAATGGGTAATACCAATGCCA 60.406 38.462 12.03 0.00 45.13 4.92
3145 4202 5.980715 CGTTTTAATGGGTAATACCAATGCC 59.019 40.000 12.03 0.00 45.13 4.40
3146 4203 6.797454 TCGTTTTAATGGGTAATACCAATGC 58.203 36.000 12.03 0.00 45.13 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.