Multiple sequence alignment - TraesCS2D01G101400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G101400 chr2D 100.000 3687 0 0 1 3687 54489014 54485328 0.000000e+00 6809.0
1 TraesCS2D01G101400 chr2D 85.347 1945 137 87 810 2691 54317309 54319168 0.000000e+00 1877.0
2 TraesCS2D01G101400 chr2A 89.514 2899 156 73 110 2932 54956420 54953594 0.000000e+00 3533.0
3 TraesCS2D01G101400 chr2A 90.573 838 37 18 1012 1846 54882358 54883156 0.000000e+00 1072.0
4 TraesCS2D01G101400 chr2A 82.548 722 63 26 1996 2689 54883302 54883988 8.880000e-161 577.0
5 TraesCS2D01G101400 chr2A 84.545 440 54 7 3257 3687 54953526 54953092 1.220000e-114 424.0
6 TraesCS2D01G101400 chr2A 87.349 166 11 8 741 903 54882140 54882298 8.130000e-42 182.0
7 TraesCS2D01G101400 chr2B 93.085 2010 75 31 976 2937 85177977 85175984 0.000000e+00 2883.0
8 TraesCS2D01G101400 chr2B 89.575 1247 70 33 640 1846 85073601 85074827 0.000000e+00 1528.0
9 TraesCS2D01G101400 chr2B 82.897 725 58 30 1999 2691 85074983 85075673 3.170000e-165 592.0
10 TraesCS2D01G101400 chr2B 89.677 465 41 5 3149 3607 85175206 85174743 1.480000e-163 586.0
11 TraesCS2D01G101400 chr4D 85.802 324 39 6 1263 1584 304690478 304690796 1.640000e-88 337.0
12 TraesCS2D01G101400 chr4D 90.604 149 14 0 1036 1184 304690191 304690339 8.080000e-47 198.0
13 TraesCS2D01G101400 chr4B 85.494 324 40 5 1263 1584 380653769 380654087 7.630000e-87 331.0
14 TraesCS2D01G101400 chr4B 90.604 149 14 0 1036 1184 380653478 380653626 8.080000e-47 198.0
15 TraesCS2D01G101400 chr4B 89.865 148 13 2 2961 3106 618698872 618699019 4.860000e-44 189.0
16 TraesCS2D01G101400 chr4B 87.898 157 15 4 2953 3106 181683270 181683115 8.130000e-42 182.0
17 TraesCS2D01G101400 chr4A 85.993 307 38 3 1282 1587 174157172 174156870 1.280000e-84 324.0
18 TraesCS2D01G101400 chr4A 90.604 149 14 0 1036 1184 174157472 174157324 8.080000e-47 198.0
19 TraesCS2D01G101400 chr5A 78.850 487 78 19 1049 1519 317248159 317247682 4.630000e-79 305.0
20 TraesCS2D01G101400 chr5A 89.189 148 15 1 2961 3107 426945304 426945451 2.260000e-42 183.0
21 TraesCS2D01G101400 chr5A 89.116 147 14 2 2962 3106 124598262 124598408 8.130000e-42 182.0
22 TraesCS2D01G101400 chr7B 91.096 146 11 2 2963 3107 81696091 81695947 2.900000e-46 196.0
23 TraesCS2D01G101400 chr6D 88.667 150 15 2 2959 3106 464441383 464441532 8.130000e-42 182.0
24 TraesCS2D01G101400 chr6B 89.116 147 14 2 2962 3106 40071727 40071581 8.130000e-42 182.0
25 TraesCS2D01G101400 chrUn 88.591 149 16 1 2959 3106 293303017 293303165 2.930000e-41 180.0
26 TraesCS2D01G101400 chr5D 86.957 161 19 2 2948 3106 534086123 534086283 2.930000e-41 180.0
27 TraesCS2D01G101400 chr3B 82.703 185 24 6 126 309 739572172 739571995 1.370000e-34 158.0
28 TraesCS2D01G101400 chr1A 83.226 155 22 4 1036 1188 459188396 459188244 4.960000e-29 139.0
29 TraesCS2D01G101400 chr3D 91.667 60 3 2 166 224 557460802 557460744 8.490000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G101400 chr2D 54485328 54489014 3686 True 6809.000000 6809 100.000000 1 3687 1 chr2D.!!$R1 3686
1 TraesCS2D01G101400 chr2D 54317309 54319168 1859 False 1877.000000 1877 85.347000 810 2691 1 chr2D.!!$F1 1881
2 TraesCS2D01G101400 chr2A 54953092 54956420 3328 True 1978.500000 3533 87.029500 110 3687 2 chr2A.!!$R1 3577
3 TraesCS2D01G101400 chr2A 54882140 54883988 1848 False 610.333333 1072 86.823333 741 2689 3 chr2A.!!$F1 1948
4 TraesCS2D01G101400 chr2B 85174743 85177977 3234 True 1734.500000 2883 91.381000 976 3607 2 chr2B.!!$R1 2631
5 TraesCS2D01G101400 chr2B 85073601 85075673 2072 False 1060.000000 1528 86.236000 640 2691 2 chr2B.!!$F1 2051
6 TraesCS2D01G101400 chr4D 304690191 304690796 605 False 267.500000 337 88.203000 1036 1584 2 chr4D.!!$F1 548
7 TraesCS2D01G101400 chr4B 380653478 380654087 609 False 264.500000 331 88.049000 1036 1584 2 chr4B.!!$F2 548
8 TraesCS2D01G101400 chr4A 174156870 174157472 602 True 261.000000 324 88.298500 1036 1587 2 chr4A.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.037975 GCAGTTTCGGGTTCGAGGTA 60.038 55.000 0.0 0.0 46.75 3.08 F
269 270 0.168788 CGCCAAATCAGCAATCACGT 59.831 50.000 0.0 0.0 0.00 4.49 F
913 963 0.394192 CTGTGTGTGAGCTTCTCCCA 59.606 55.000 0.0 0.0 0.00 4.37 F
1207 1294 1.130373 CAACCAATCAACCGATCACCG 59.870 52.381 0.0 0.0 38.18 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1309 0.325577 TGGTGAGCAGAGCAGGGATA 60.326 55.000 0.00 0.00 0.00 2.59 R
1966 2230 0.389757 GTGCCACTAGCTAGCTACCC 59.610 60.000 20.67 9.31 44.23 3.69 R
1971 2235 2.586357 GCCGTGCCACTAGCTAGC 60.586 66.667 20.91 6.62 44.23 3.42 R
3052 3458 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.319198 GCAGGGTGAGGGGTCGAA 61.319 66.667 0.00 0.00 0.00 3.71
28 29 2.982130 CAGGGTGAGGGGTCGAAG 59.018 66.667 0.00 0.00 0.00 3.79
29 30 1.609501 CAGGGTGAGGGGTCGAAGA 60.610 63.158 0.00 0.00 0.00 2.87
30 31 1.305381 AGGGTGAGGGGTCGAAGAG 60.305 63.158 0.00 0.00 36.95 2.85
39 40 4.411136 GTCGAAGAGCCTGCTAGC 57.589 61.111 8.10 8.10 36.95 3.42
40 41 1.513158 GTCGAAGAGCCTGCTAGCA 59.487 57.895 18.22 18.22 36.95 3.49
41 42 0.527385 GTCGAAGAGCCTGCTAGCAG 60.527 60.000 33.58 33.58 39.89 4.24
42 43 0.967887 TCGAAGAGCCTGCTAGCAGT 60.968 55.000 36.14 23.30 42.15 4.40
43 44 0.108424 CGAAGAGCCTGCTAGCAGTT 60.108 55.000 36.14 26.14 42.15 3.16
44 45 1.674221 CGAAGAGCCTGCTAGCAGTTT 60.674 52.381 36.14 25.99 42.15 2.66
45 46 2.006169 GAAGAGCCTGCTAGCAGTTTC 58.994 52.381 36.14 30.72 42.15 2.78
46 47 0.108424 AGAGCCTGCTAGCAGTTTCG 60.108 55.000 36.14 24.47 42.15 3.46
47 48 1.078848 AGCCTGCTAGCAGTTTCGG 60.079 57.895 36.14 25.45 42.15 4.30
48 49 2.109126 GCCTGCTAGCAGTTTCGGG 61.109 63.158 36.14 24.79 42.15 5.14
49 50 1.296715 CCTGCTAGCAGTTTCGGGT 59.703 57.895 36.14 0.00 42.15 5.28
50 51 0.321653 CCTGCTAGCAGTTTCGGGTT 60.322 55.000 36.14 0.00 42.15 4.11
51 52 1.079503 CTGCTAGCAGTTTCGGGTTC 58.920 55.000 32.46 0.00 39.10 3.62
52 53 0.669318 TGCTAGCAGTTTCGGGTTCG 60.669 55.000 14.93 0.00 37.82 3.95
53 54 0.389426 GCTAGCAGTTTCGGGTTCGA 60.389 55.000 10.63 0.00 44.44 3.71
54 55 1.630148 CTAGCAGTTTCGGGTTCGAG 58.370 55.000 0.00 0.00 46.75 4.04
55 56 0.245539 TAGCAGTTTCGGGTTCGAGG 59.754 55.000 0.00 0.00 46.75 4.63
56 57 1.301479 GCAGTTTCGGGTTCGAGGT 60.301 57.895 0.00 0.00 46.75 3.85
57 58 0.037975 GCAGTTTCGGGTTCGAGGTA 60.038 55.000 0.00 0.00 46.75 3.08
58 59 1.606224 GCAGTTTCGGGTTCGAGGTAA 60.606 52.381 0.00 0.00 46.75 2.85
59 60 2.933928 GCAGTTTCGGGTTCGAGGTAAT 60.934 50.000 0.00 0.00 46.75 1.89
60 61 3.332034 CAGTTTCGGGTTCGAGGTAATT 58.668 45.455 0.00 0.00 46.75 1.40
61 62 3.124636 CAGTTTCGGGTTCGAGGTAATTG 59.875 47.826 0.00 0.00 46.75 2.32
62 63 3.007182 AGTTTCGGGTTCGAGGTAATTGA 59.993 43.478 0.00 0.00 46.75 2.57
63 64 2.660189 TCGGGTTCGAGGTAATTGAC 57.340 50.000 0.00 0.00 40.88 3.18
64 65 1.894466 TCGGGTTCGAGGTAATTGACA 59.106 47.619 0.00 0.00 40.88 3.58
65 66 1.997606 CGGGTTCGAGGTAATTGACAC 59.002 52.381 0.00 0.00 39.00 3.67
66 67 2.353406 CGGGTTCGAGGTAATTGACACT 60.353 50.000 0.00 0.00 39.00 3.55
67 68 3.000727 GGGTTCGAGGTAATTGACACTG 58.999 50.000 0.00 0.00 0.00 3.66
68 69 2.415512 GGTTCGAGGTAATTGACACTGC 59.584 50.000 0.00 0.00 0.00 4.40
69 70 3.326747 GTTCGAGGTAATTGACACTGCT 58.673 45.455 0.00 0.00 0.00 4.24
70 71 4.491676 GTTCGAGGTAATTGACACTGCTA 58.508 43.478 0.00 0.00 0.00 3.49
71 72 4.371855 TCGAGGTAATTGACACTGCTAG 57.628 45.455 0.00 0.00 0.00 3.42
72 73 4.014406 TCGAGGTAATTGACACTGCTAGA 58.986 43.478 0.00 0.00 0.00 2.43
73 74 4.461431 TCGAGGTAATTGACACTGCTAGAA 59.539 41.667 0.00 0.00 0.00 2.10
74 75 5.047590 TCGAGGTAATTGACACTGCTAGAAA 60.048 40.000 0.00 0.00 0.00 2.52
75 76 5.812642 CGAGGTAATTGACACTGCTAGAAAT 59.187 40.000 0.00 0.00 0.00 2.17
76 77 6.019479 CGAGGTAATTGACACTGCTAGAAATC 60.019 42.308 0.00 0.00 0.00 2.17
77 78 6.116126 AGGTAATTGACACTGCTAGAAATCC 58.884 40.000 0.00 0.00 0.00 3.01
78 79 6.069963 AGGTAATTGACACTGCTAGAAATCCT 60.070 38.462 0.00 0.00 0.00 3.24
79 80 7.125811 AGGTAATTGACACTGCTAGAAATCCTA 59.874 37.037 0.00 0.00 0.00 2.94
80 81 7.934120 GGTAATTGACACTGCTAGAAATCCTAT 59.066 37.037 0.00 0.00 0.00 2.57
81 82 9.331282 GTAATTGACACTGCTAGAAATCCTATT 57.669 33.333 0.00 0.00 0.00 1.73
82 83 8.443953 AATTGACACTGCTAGAAATCCTATTC 57.556 34.615 0.00 0.00 0.00 1.75
83 84 6.798427 TGACACTGCTAGAAATCCTATTCT 57.202 37.500 0.00 0.00 42.21 2.40
84 85 7.187824 TGACACTGCTAGAAATCCTATTCTT 57.812 36.000 0.00 0.00 40.13 2.52
85 86 8.306313 TGACACTGCTAGAAATCCTATTCTTA 57.694 34.615 0.00 0.00 40.13 2.10
86 87 8.198109 TGACACTGCTAGAAATCCTATTCTTAC 58.802 37.037 0.00 0.00 40.13 2.34
87 88 8.079211 ACACTGCTAGAAATCCTATTCTTACA 57.921 34.615 0.00 0.00 40.13 2.41
88 89 8.709308 ACACTGCTAGAAATCCTATTCTTACAT 58.291 33.333 0.00 0.00 40.13 2.29
89 90 8.986847 CACTGCTAGAAATCCTATTCTTACATG 58.013 37.037 0.00 0.00 40.13 3.21
90 91 7.659390 ACTGCTAGAAATCCTATTCTTACATGC 59.341 37.037 0.00 0.00 40.13 4.06
91 92 7.739825 TGCTAGAAATCCTATTCTTACATGCT 58.260 34.615 0.00 0.00 40.13 3.79
92 93 7.875041 TGCTAGAAATCCTATTCTTACATGCTC 59.125 37.037 0.00 0.00 40.13 4.26
93 94 7.333174 GCTAGAAATCCTATTCTTACATGCTCC 59.667 40.741 0.00 0.00 40.13 4.70
94 95 7.385894 AGAAATCCTATTCTTACATGCTCCT 57.614 36.000 0.00 0.00 36.23 3.69
95 96 7.810260 AGAAATCCTATTCTTACATGCTCCTT 58.190 34.615 0.00 0.00 36.23 3.36
96 97 8.277918 AGAAATCCTATTCTTACATGCTCCTTT 58.722 33.333 0.00 0.00 36.23 3.11
97 98 7.814264 AATCCTATTCTTACATGCTCCTTTG 57.186 36.000 0.00 0.00 0.00 2.77
98 99 5.684704 TCCTATTCTTACATGCTCCTTTGG 58.315 41.667 0.00 0.00 0.00 3.28
99 100 4.276926 CCTATTCTTACATGCTCCTTTGGC 59.723 45.833 0.00 0.00 0.00 4.52
100 101 3.439857 TTCTTACATGCTCCTTTGGCT 57.560 42.857 0.00 0.00 0.00 4.75
101 102 3.439857 TCTTACATGCTCCTTTGGCTT 57.560 42.857 0.00 0.00 0.00 4.35
102 103 3.766545 TCTTACATGCTCCTTTGGCTTT 58.233 40.909 0.00 0.00 0.00 3.51
103 104 4.917385 TCTTACATGCTCCTTTGGCTTTA 58.083 39.130 0.00 0.00 0.00 1.85
104 105 5.321102 TCTTACATGCTCCTTTGGCTTTAA 58.679 37.500 0.00 0.00 0.00 1.52
105 106 5.951747 TCTTACATGCTCCTTTGGCTTTAAT 59.048 36.000 0.00 0.00 0.00 1.40
106 107 7.116075 TCTTACATGCTCCTTTGGCTTTAATA 58.884 34.615 0.00 0.00 0.00 0.98
107 108 7.613801 TCTTACATGCTCCTTTGGCTTTAATAA 59.386 33.333 0.00 0.00 0.00 1.40
108 109 5.965922 ACATGCTCCTTTGGCTTTAATAAC 58.034 37.500 0.00 0.00 0.00 1.89
158 159 0.796312 CTGCGAACAGGCGTTATGTT 59.204 50.000 2.36 2.36 43.38 2.71
159 160 1.996898 CTGCGAACAGGCGTTATGTTA 59.003 47.619 2.69 0.00 40.86 2.41
160 161 2.607635 CTGCGAACAGGCGTTATGTTAT 59.392 45.455 2.69 0.00 40.86 1.89
161 162 2.350192 TGCGAACAGGCGTTATGTTATG 59.650 45.455 2.69 1.31 40.86 1.90
162 163 2.849502 GCGAACAGGCGTTATGTTATGC 60.850 50.000 2.69 6.35 40.86 3.14
181 182 9.650539 TGTTATGCAACTACGTAATTACCTTAA 57.349 29.630 10.01 1.36 35.56 1.85
238 239 1.375523 CGTGCCCCCAACTAGTGAC 60.376 63.158 0.00 0.00 0.00 3.67
239 240 1.375523 GTGCCCCCAACTAGTGACG 60.376 63.158 0.00 0.00 0.00 4.35
250 251 6.376177 CCCAACTAGTGACGAATTAAAAACC 58.624 40.000 0.00 0.00 0.00 3.27
267 268 0.527565 ACCGCCAAATCAGCAATCAC 59.472 50.000 0.00 0.00 0.00 3.06
269 270 0.168788 CGCCAAATCAGCAATCACGT 59.831 50.000 0.00 0.00 0.00 4.49
276 277 5.296780 CCAAATCAGCAATCACGTAAGGTAT 59.703 40.000 0.00 0.00 46.39 2.73
336 337 7.538575 CAAAACATGGGAATAACTACCTTCAG 58.461 38.462 0.00 0.00 0.00 3.02
361 362 9.268268 AGATTGAACTAGTACGTTGAATTTTCA 57.732 29.630 0.00 0.00 32.21 2.69
412 413 2.572290 CTCGACAAAGGAAACCCAACT 58.428 47.619 0.00 0.00 0.00 3.16
416 417 3.628487 CGACAAAGGAAACCCAACTAACA 59.372 43.478 0.00 0.00 0.00 2.41
420 421 2.567985 AGGAAACCCAACTAACACACG 58.432 47.619 0.00 0.00 0.00 4.49
439 440 1.078214 CATGCACACCTCATCCGGT 60.078 57.895 0.00 0.00 37.93 5.28
494 495 1.645034 ACAGCTTGCTACTACATGCG 58.355 50.000 0.00 0.00 43.43 4.73
495 496 1.204704 ACAGCTTGCTACTACATGCGA 59.795 47.619 0.00 0.00 43.43 5.10
496 497 1.857217 CAGCTTGCTACTACATGCGAG 59.143 52.381 0.00 0.00 43.43 5.03
559 579 3.931468 CGGAGATATCACATGAGATTGGC 59.069 47.826 11.02 1.96 0.00 4.52
574 594 0.673644 TTGGCGAGCAAGTTAGGAGC 60.674 55.000 0.00 0.00 0.00 4.70
577 597 1.215647 CGAGCAAGTTAGGAGCGGT 59.784 57.895 0.00 0.00 0.00 5.68
593 613 4.530857 GTGCGGCGGCTATGACCT 62.531 66.667 17.76 0.00 40.82 3.85
594 614 4.529219 TGCGGCGGCTATGACCTG 62.529 66.667 17.76 0.00 40.82 4.00
595 615 4.530857 GCGGCGGCTATGACCTGT 62.531 66.667 9.78 0.00 35.83 4.00
623 651 1.671469 CTACTAGATACGGTTGCGCG 58.329 55.000 0.00 0.00 0.00 6.86
713 743 1.064952 GCGGGGAATAACGAACCAATG 59.935 52.381 0.00 0.00 0.00 2.82
863 899 1.071299 CCCATCCGCCATTCGATCA 59.929 57.895 0.00 0.00 41.67 2.92
882 918 3.165875 TCACATCCCCGAGATAGATTCC 58.834 50.000 0.00 0.00 32.37 3.01
894 938 1.481871 TAGATTCCGGTCTGGTCCAC 58.518 55.000 0.00 0.00 39.52 4.02
913 963 0.394192 CTGTGTGTGAGCTTCTCCCA 59.606 55.000 0.00 0.00 0.00 4.37
950 1027 1.419374 CGTGTGTGTGTTAGAGAGCC 58.581 55.000 0.00 0.00 0.00 4.70
1206 1293 2.420022 CTCAACCAATCAACCGATCACC 59.580 50.000 0.00 0.00 0.00 4.02
1207 1294 1.130373 CAACCAATCAACCGATCACCG 59.870 52.381 0.00 0.00 38.18 4.94
1218 1309 1.145759 CGATCACCGCGCTGTATGTT 61.146 55.000 3.49 0.00 0.00 2.71
1219 1310 1.847818 GATCACCGCGCTGTATGTTA 58.152 50.000 3.49 0.00 0.00 2.41
1607 1805 2.703798 CGCCCATCCCACTTGCTTG 61.704 63.158 0.00 0.00 0.00 4.01
1632 1833 2.026157 TCGTCGATCGAGCATGGC 59.974 61.111 20.09 4.44 44.01 4.40
1686 1887 4.424566 GCCATGCCCGTGTGCAAG 62.425 66.667 0.00 0.00 45.84 4.01
1734 1935 1.153568 CTGATTCTCTTCGCGCCCA 60.154 57.895 0.00 0.00 0.00 5.36
1735 1936 1.150567 CTGATTCTCTTCGCGCCCAG 61.151 60.000 0.00 0.00 0.00 4.45
1736 1937 2.512515 ATTCTCTTCGCGCCCAGC 60.513 61.111 0.00 0.00 43.95 4.85
1737 1938 4.760047 TTCTCTTCGCGCCCAGCC 62.760 66.667 0.00 0.00 44.76 4.85
1829 2041 8.926374 TGCATCCATCTTTATTTAATGACCAAT 58.074 29.630 0.00 0.00 0.00 3.16
1841 2054 7.732222 TTTAATGACCAATTTGCCCTCTAAT 57.268 32.000 0.00 0.00 0.00 1.73
1846 2059 5.134725 ACCAATTTGCCCTCTAATCTGAT 57.865 39.130 0.00 0.00 0.00 2.90
1851 2064 7.120873 CCAATTTGCCCTCTAATCTGATATCAG 59.879 40.741 24.32 24.32 45.08 2.90
1855 2093 6.556639 TGCCCTCTAATCTGATATCAGTACT 58.443 40.000 27.80 17.20 44.12 2.73
1963 2227 4.811024 AGAAATTAGCTTCGCGATTGATGA 59.189 37.500 10.88 1.81 0.00 2.92
1966 2230 1.284657 AGCTTCGCGATTGATGAGTG 58.715 50.000 10.88 0.00 0.00 3.51
1971 2235 1.067060 TCGCGATTGATGAGTGGGTAG 59.933 52.381 3.71 0.00 0.00 3.18
2069 2359 1.510480 GACAAGGATAGGCATGGCGC 61.510 60.000 14.30 0.00 41.28 6.53
2752 3108 5.064707 GCGACATGAAACAATCTTAGGCTTA 59.935 40.000 0.00 0.00 0.00 3.09
2791 3155 9.494271 ACAATCTTGTACTACATGCTAATATGG 57.506 33.333 0.00 0.00 40.16 2.74
2864 3230 4.811555 TTGAACAAGCAGACATGTACAC 57.188 40.909 0.00 0.00 0.00 2.90
2901 3269 5.640147 TCCAGTGTATTCATTTTTCCAGGT 58.360 37.500 0.00 0.00 0.00 4.00
2902 3270 6.785076 TCCAGTGTATTCATTTTTCCAGGTA 58.215 36.000 0.00 0.00 0.00 3.08
2985 3391 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
2987 3393 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
2988 3394 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
2989 3395 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
2990 3396 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
2991 3397 1.006102 AGTACAGACGCAAGCGCTT 60.006 52.632 18.98 18.98 44.19 4.68
2992 3398 0.242825 AGTACAGACGCAAGCGCTTA 59.757 50.000 24.55 0.72 44.19 3.09
2993 3399 1.135083 AGTACAGACGCAAGCGCTTAT 60.135 47.619 24.55 11.59 44.19 1.73
2994 3400 2.098607 AGTACAGACGCAAGCGCTTATA 59.901 45.455 24.55 4.12 44.19 0.98
2995 3401 1.278238 ACAGACGCAAGCGCTTATAC 58.722 50.000 24.55 14.27 44.19 1.47
2996 3402 1.277326 CAGACGCAAGCGCTTATACA 58.723 50.000 24.55 0.00 44.19 2.29
2997 3403 1.860950 CAGACGCAAGCGCTTATACAT 59.139 47.619 24.55 3.49 44.19 2.29
2998 3404 3.049912 CAGACGCAAGCGCTTATACATA 58.950 45.455 24.55 0.00 44.19 2.29
2999 3405 3.050619 AGACGCAAGCGCTTATACATAC 58.949 45.455 24.55 10.53 44.19 2.39
3000 3406 2.792674 GACGCAAGCGCTTATACATACA 59.207 45.455 24.55 0.00 44.19 2.29
3001 3407 2.538449 ACGCAAGCGCTTATACATACAC 59.462 45.455 24.55 3.10 44.19 2.90
3002 3408 2.408487 CGCAAGCGCTTATACATACACG 60.408 50.000 24.55 7.40 35.30 4.49
3003 3409 2.792674 GCAAGCGCTTATACATACACGA 59.207 45.455 24.55 0.00 34.30 4.35
3004 3410 3.244345 GCAAGCGCTTATACATACACGAA 59.756 43.478 24.55 0.00 34.30 3.85
3005 3411 4.084537 GCAAGCGCTTATACATACACGAAT 60.085 41.667 24.55 0.00 34.30 3.34
3006 3412 5.118050 GCAAGCGCTTATACATACACGAATA 59.882 40.000 24.55 0.00 34.30 1.75
3007 3413 6.514171 CAAGCGCTTATACATACACGAATAC 58.486 40.000 24.55 0.00 0.00 1.89
3008 3414 5.765176 AGCGCTTATACATACACGAATACA 58.235 37.500 2.64 0.00 0.00 2.29
3009 3415 5.628193 AGCGCTTATACATACACGAATACAC 59.372 40.000 2.64 0.00 0.00 2.90
3010 3416 5.628193 GCGCTTATACATACACGAATACACT 59.372 40.000 0.00 0.00 0.00 3.55
3011 3417 6.183359 GCGCTTATACATACACGAATACACTC 60.183 42.308 0.00 0.00 0.00 3.51
3012 3418 6.854381 CGCTTATACATACACGAATACACTCA 59.146 38.462 0.00 0.00 0.00 3.41
3013 3419 7.377662 CGCTTATACATACACGAATACACTCAA 59.622 37.037 0.00 0.00 0.00 3.02
3014 3420 8.477709 GCTTATACATACACGAATACACTCAAC 58.522 37.037 0.00 0.00 0.00 3.18
3015 3421 9.731819 CTTATACATACACGAATACACTCAACT 57.268 33.333 0.00 0.00 0.00 3.16
3016 3422 9.726232 TTATACATACACGAATACACTCAACTC 57.274 33.333 0.00 0.00 0.00 3.01
3017 3423 6.268825 ACATACACGAATACACTCAACTCT 57.731 37.500 0.00 0.00 0.00 3.24
3018 3424 7.387119 ACATACACGAATACACTCAACTCTA 57.613 36.000 0.00 0.00 0.00 2.43
3019 3425 7.997482 ACATACACGAATACACTCAACTCTAT 58.003 34.615 0.00 0.00 0.00 1.98
3020 3426 7.915923 ACATACACGAATACACTCAACTCTATG 59.084 37.037 0.00 0.00 0.00 2.23
3021 3427 6.510879 ACACGAATACACTCAACTCTATGA 57.489 37.500 0.00 0.00 0.00 2.15
3022 3428 6.920817 ACACGAATACACTCAACTCTATGAA 58.079 36.000 0.00 0.00 0.00 2.57
3023 3429 6.807230 ACACGAATACACTCAACTCTATGAAC 59.193 38.462 0.00 0.00 0.00 3.18
3024 3430 6.021390 CACGAATACACTCAACTCTATGAACG 60.021 42.308 0.00 0.00 0.00 3.95
3025 3431 5.052304 CGAATACACTCAACTCTATGAACGC 60.052 44.000 0.00 0.00 0.00 4.84
3026 3432 2.596452 ACACTCAACTCTATGAACGCG 58.404 47.619 3.53 3.53 0.00 6.01
3027 3433 1.321743 CACTCAACTCTATGAACGCGC 59.678 52.381 5.73 0.00 0.00 6.86
3028 3434 0.567968 CTCAACTCTATGAACGCGCG 59.432 55.000 30.96 30.96 0.00 6.86
3029 3435 1.013323 CAACTCTATGAACGCGCGC 60.013 57.895 32.58 23.91 0.00 6.86
3030 3436 1.445410 AACTCTATGAACGCGCGCA 60.445 52.632 32.58 21.73 0.00 6.09
3031 3437 1.683790 AACTCTATGAACGCGCGCAC 61.684 55.000 32.58 23.88 0.00 5.34
3032 3438 2.126267 TCTATGAACGCGCGCACA 60.126 55.556 32.58 28.72 0.00 4.57
3033 3439 2.020016 CTATGAACGCGCGCACAC 59.980 61.111 32.58 20.38 0.00 3.82
3034 3440 2.725699 CTATGAACGCGCGCACACA 61.726 57.895 32.58 25.17 0.00 3.72
3035 3441 2.863655 CTATGAACGCGCGCACACAC 62.864 60.000 32.58 16.76 0.00 3.82
3042 3448 2.434185 CGCGCACACACACCCTAT 60.434 61.111 8.75 0.00 0.00 2.57
3043 3449 2.452813 CGCGCACACACACCCTATC 61.453 63.158 8.75 0.00 0.00 2.08
3044 3450 2.106683 GCGCACACACACCCTATCC 61.107 63.158 0.30 0.00 0.00 2.59
3045 3451 1.449601 CGCACACACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
3046 3452 1.899437 CGCACACACACCCTATCCCT 61.899 60.000 0.00 0.00 0.00 4.20
3047 3453 1.200519 GCACACACACCCTATCCCTA 58.799 55.000 0.00 0.00 0.00 3.53
3048 3454 1.768870 GCACACACACCCTATCCCTAT 59.231 52.381 0.00 0.00 0.00 2.57
3049 3455 2.485479 GCACACACACCCTATCCCTATG 60.485 54.545 0.00 0.00 0.00 2.23
3050 3456 3.038280 CACACACACCCTATCCCTATGA 58.962 50.000 0.00 0.00 0.00 2.15
3051 3457 3.070159 CACACACACCCTATCCCTATGAG 59.930 52.174 0.00 0.00 0.00 2.90
3052 3458 2.037772 CACACACCCTATCCCTATGAGC 59.962 54.545 0.00 0.00 0.00 4.26
3053 3459 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
3054 3460 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
3055 3461 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
3056 3462 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
3057 3463 2.089925 ACCCTATCCCTATGAGCACCTT 60.090 50.000 0.00 0.00 0.00 3.50
3058 3464 2.569404 CCCTATCCCTATGAGCACCTTC 59.431 54.545 0.00 0.00 0.00 3.46
3059 3465 2.232452 CCTATCCCTATGAGCACCTTCG 59.768 54.545 0.00 0.00 0.00 3.79
3060 3466 2.088104 ATCCCTATGAGCACCTTCGA 57.912 50.000 0.00 0.00 0.00 3.71
3061 3467 1.403814 TCCCTATGAGCACCTTCGAG 58.596 55.000 0.00 0.00 0.00 4.04
3062 3468 1.063942 TCCCTATGAGCACCTTCGAGA 60.064 52.381 0.00 0.00 0.00 4.04
3063 3469 1.339610 CCCTATGAGCACCTTCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
3064 3470 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
3065 3471 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
3066 3472 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
3067 3473 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
3068 3474 1.169577 GAGCACCTTCGAGAGACTGA 58.830 55.000 0.00 0.00 41.84 3.41
3069 3475 1.132262 GAGCACCTTCGAGAGACTGAG 59.868 57.143 0.00 0.00 41.84 3.35
3070 3476 0.457681 GCACCTTCGAGAGACTGAGC 60.458 60.000 0.00 0.00 41.84 4.26
3071 3477 0.172352 CACCTTCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 41.84 4.70
3072 3478 1.309499 ACCTTCGAGAGACTGAGCCG 61.309 60.000 0.00 0.00 41.84 5.52
3073 3479 1.431440 CTTCGAGAGACTGAGCCGG 59.569 63.158 0.00 0.00 41.84 6.13
3074 3480 2.606155 CTTCGAGAGACTGAGCCGGC 62.606 65.000 21.89 21.89 41.84 6.13
3075 3481 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
3076 3482 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
3077 3483 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
3078 3484 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
3079 3485 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
3080 3486 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
3081 3487 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
3082 3488 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
3083 3489 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
3084 3490 1.001746 ACTGAGCCGGCATATCATCTG 59.998 52.381 31.54 21.07 0.00 2.90
3085 3491 1.274447 CTGAGCCGGCATATCATCTGA 59.726 52.381 31.54 0.00 0.00 3.27
3086 3492 1.274447 TGAGCCGGCATATCATCTGAG 59.726 52.381 31.54 0.00 0.00 3.35
3087 3493 1.547820 GAGCCGGCATATCATCTGAGA 59.452 52.381 31.54 0.00 0.00 3.27
3088 3494 2.168106 GAGCCGGCATATCATCTGAGAT 59.832 50.000 31.54 0.89 0.00 2.75
3089 3495 2.570752 AGCCGGCATATCATCTGAGATT 59.429 45.455 31.54 0.00 0.00 2.40
3090 3496 3.008813 AGCCGGCATATCATCTGAGATTT 59.991 43.478 31.54 0.00 0.00 2.17
3091 3497 4.223700 AGCCGGCATATCATCTGAGATTTA 59.776 41.667 31.54 0.00 0.00 1.40
3092 3498 4.331168 GCCGGCATATCATCTGAGATTTAC 59.669 45.833 24.80 0.00 0.00 2.01
3093 3499 5.482006 CCGGCATATCATCTGAGATTTACA 58.518 41.667 0.00 0.00 0.00 2.41
3094 3500 5.934043 CCGGCATATCATCTGAGATTTACAA 59.066 40.000 0.00 0.00 0.00 2.41
3095 3501 6.427853 CCGGCATATCATCTGAGATTTACAAA 59.572 38.462 0.00 0.00 0.00 2.83
3096 3502 7.360691 CCGGCATATCATCTGAGATTTACAAAG 60.361 40.741 0.00 0.00 0.00 2.77
3097 3503 7.303998 GGCATATCATCTGAGATTTACAAAGC 58.696 38.462 0.00 0.00 0.00 3.51
3098 3504 7.174599 GGCATATCATCTGAGATTTACAAAGCT 59.825 37.037 0.00 0.00 37.35 3.74
3099 3505 9.212641 GCATATCATCTGAGATTTACAAAGCTA 57.787 33.333 0.00 0.00 34.31 3.32
3101 3507 9.717942 ATATCATCTGAGATTTACAAAGCTACC 57.282 33.333 0.00 0.00 34.31 3.18
3102 3508 6.042777 TCATCTGAGATTTACAAAGCTACCG 58.957 40.000 0.00 0.00 34.31 4.02
3103 3509 5.401531 TCTGAGATTTACAAAGCTACCGT 57.598 39.130 0.00 0.00 34.31 4.83
3104 3510 6.519679 TCTGAGATTTACAAAGCTACCGTA 57.480 37.500 0.00 0.00 34.31 4.02
3105 3511 6.561614 TCTGAGATTTACAAAGCTACCGTAG 58.438 40.000 0.76 0.76 34.31 3.51
3106 3512 6.376299 TCTGAGATTTACAAAGCTACCGTAGA 59.624 38.462 9.88 0.00 34.31 2.59
3107 3513 7.068348 TCTGAGATTTACAAAGCTACCGTAGAT 59.932 37.037 9.88 0.00 34.31 1.98
3108 3514 7.553334 TGAGATTTACAAAGCTACCGTAGATT 58.447 34.615 9.88 6.49 34.31 2.40
3109 3515 7.491372 TGAGATTTACAAAGCTACCGTAGATTG 59.509 37.037 9.75 14.06 34.31 2.67
3110 3516 5.789710 TTTACAAAGCTACCGTAGATTGC 57.210 39.130 9.75 0.00 0.00 3.56
3121 3527 1.328680 CGTAGATTGCATGGAGTGTGC 59.671 52.381 0.00 0.00 42.81 4.57
3128 3534 0.670162 GCATGGAGTGTGCAAACAGT 59.330 50.000 10.29 0.00 42.08 3.55
3133 3539 3.146066 TGGAGTGTGCAAACAGTTATCC 58.854 45.455 10.29 7.53 0.00 2.59
3141 3547 5.028375 GTGCAAACAGTTATCCGCTATTTC 58.972 41.667 0.00 0.00 0.00 2.17
3146 3552 7.312899 CAAACAGTTATCCGCTATTTCCTTTT 58.687 34.615 0.00 0.00 0.00 2.27
3180 4269 7.576861 TTCTTTCCATTTTTACGGGGATATC 57.423 36.000 0.00 0.00 0.00 1.63
3181 4270 6.906848 TCTTTCCATTTTTACGGGGATATCT 58.093 36.000 2.05 0.00 0.00 1.98
3199 4288 8.630037 GGGATATCTTTTCGGTCAATTTATTGT 58.370 33.333 2.05 0.00 38.84 2.71
3231 4320 1.000843 GGACCACTTTCCATGCCAAAC 59.999 52.381 0.00 0.00 35.49 2.93
3232 4321 1.000843 GACCACTTTCCATGCCAAACC 59.999 52.381 0.00 0.00 0.00 3.27
3327 4421 5.470047 TGGTTGGTTTTTGTGTTTGTAGT 57.530 34.783 0.00 0.00 0.00 2.73
3334 4428 7.551585 TGGTTTTTGTGTTTGTAGTGATGATT 58.448 30.769 0.00 0.00 0.00 2.57
3394 4488 2.005606 ATGGCCCCGTCCATATGCAA 62.006 55.000 0.00 0.00 44.60 4.08
3396 4490 0.827507 GGCCCCGTCCATATGCAAAT 60.828 55.000 0.00 0.00 0.00 2.32
3416 4510 1.234821 GTGGCGATCTTGGTTGACAA 58.765 50.000 0.00 0.00 37.55 3.18
3467 4561 5.520632 TGTTGTTGACGTCAAGAAAACAAA 58.479 33.333 34.08 19.97 40.15 2.83
3474 4568 5.415077 TGACGTCAAGAAAACAAAAGGGTAA 59.585 36.000 17.62 0.00 0.00 2.85
3494 4588 3.614568 AGGGGTATCTCGTGGATAGTT 57.385 47.619 2.22 0.00 37.56 2.24
3527 4624 0.914417 AGTGGAGGTGTGTATGGGGG 60.914 60.000 0.00 0.00 0.00 5.40
3539 4636 6.487668 GGTGTGTATGGGGGTTTATGTATAAC 59.512 42.308 0.00 0.00 0.00 1.89
3540 4637 6.487668 GTGTGTATGGGGGTTTATGTATAACC 59.512 42.308 0.00 0.00 43.47 2.85
3541 4638 5.702209 GTGTATGGGGGTTTATGTATAACCG 59.298 44.000 0.00 0.00 44.82 4.44
3545 4643 1.532437 GGGTTTATGTATAACCGCCGC 59.468 52.381 0.00 0.00 44.82 6.53
3549 4647 0.751452 TATGTATAACCGCCGCACCA 59.249 50.000 0.00 0.00 0.00 4.17
3561 4659 1.895051 CCGCACCAATCGATGTTTTC 58.105 50.000 0.00 0.00 0.00 2.29
3583 4681 3.244318 CCAAGTAGGTTTGGTTACCTCGT 60.244 47.826 2.07 0.00 45.44 4.18
3603 4701 2.093890 TGGAGCACGACGTAATCCTAA 58.906 47.619 23.55 8.64 0.00 2.69
3608 4706 1.114627 ACGACGTAATCCTAACCCCC 58.885 55.000 0.00 0.00 0.00 5.40
3631 4729 1.444119 CCCCGCCGTATTGTCCATTG 61.444 60.000 0.00 0.00 0.00 2.82
3646 4744 4.963318 TCCATTGGGATACATCTCTGTC 57.037 45.455 2.09 0.00 38.64 3.51
3648 4746 3.070159 CCATTGGGATACATCTCTGTCGT 59.930 47.826 0.00 0.00 34.67 4.34
3654 4752 0.733150 TACATCTCTGTCGTCGGCTG 59.267 55.000 0.00 0.00 36.79 4.85
3668 4766 3.415087 GCTGTGAGGCTCCCCCAT 61.415 66.667 12.86 0.00 35.39 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.316573 CTTCGACCCCTCACCCTGC 62.317 68.421 0.00 0.00 0.00 4.85
11 12 1.608717 CTCTTCGACCCCTCACCCTG 61.609 65.000 0.00 0.00 0.00 4.45
12 13 1.305381 CTCTTCGACCCCTCACCCT 60.305 63.158 0.00 0.00 0.00 4.34
13 14 3.020237 GCTCTTCGACCCCTCACCC 62.020 68.421 0.00 0.00 0.00 4.61
14 15 2.579738 GCTCTTCGACCCCTCACC 59.420 66.667 0.00 0.00 0.00 4.02
15 16 1.985116 AGGCTCTTCGACCCCTCAC 60.985 63.158 0.00 0.00 0.00 3.51
16 17 1.984570 CAGGCTCTTCGACCCCTCA 60.985 63.158 0.00 0.00 0.00 3.86
17 18 2.896443 CAGGCTCTTCGACCCCTC 59.104 66.667 0.00 0.00 0.00 4.30
18 19 2.516048 TAGCAGGCTCTTCGACCCCT 62.516 60.000 0.00 0.00 0.00 4.79
19 20 2.022240 CTAGCAGGCTCTTCGACCCC 62.022 65.000 0.00 0.00 0.00 4.95
20 21 1.439644 CTAGCAGGCTCTTCGACCC 59.560 63.158 0.00 0.00 0.00 4.46
21 22 1.227118 GCTAGCAGGCTCTTCGACC 60.227 63.158 10.63 0.00 0.00 4.79
22 23 0.527385 CTGCTAGCAGGCTCTTCGAC 60.527 60.000 33.06 0.00 40.17 4.20
23 24 1.812525 CTGCTAGCAGGCTCTTCGA 59.187 57.895 33.06 0.12 40.17 3.71
24 25 4.416533 CTGCTAGCAGGCTCTTCG 57.583 61.111 33.06 9.31 40.17 3.79
32 33 2.589369 CGAACCCGAAACTGCTAGCAG 61.589 57.143 37.27 37.27 43.12 4.24
33 34 0.669318 CGAACCCGAAACTGCTAGCA 60.669 55.000 18.22 18.22 38.22 3.49
34 35 0.389426 TCGAACCCGAAACTGCTAGC 60.389 55.000 8.10 8.10 42.51 3.42
35 36 1.630148 CTCGAACCCGAAACTGCTAG 58.370 55.000 0.00 0.00 45.04 3.42
36 37 0.245539 CCTCGAACCCGAAACTGCTA 59.754 55.000 0.00 0.00 45.04 3.49
37 38 1.004918 CCTCGAACCCGAAACTGCT 60.005 57.895 0.00 0.00 45.04 4.24
38 39 0.037975 TACCTCGAACCCGAAACTGC 60.038 55.000 0.00 0.00 45.04 4.40
39 40 2.443887 TTACCTCGAACCCGAAACTG 57.556 50.000 0.00 0.00 45.04 3.16
40 41 3.007182 TCAATTACCTCGAACCCGAAACT 59.993 43.478 0.00 0.00 45.04 2.66
41 42 3.124128 GTCAATTACCTCGAACCCGAAAC 59.876 47.826 0.00 0.00 45.04 2.78
42 43 3.244146 TGTCAATTACCTCGAACCCGAAA 60.244 43.478 0.00 0.00 45.04 3.46
43 44 2.299582 TGTCAATTACCTCGAACCCGAA 59.700 45.455 0.00 0.00 45.04 4.30
44 45 1.894466 TGTCAATTACCTCGAACCCGA 59.106 47.619 0.00 0.00 43.35 5.14
45 46 1.997606 GTGTCAATTACCTCGAACCCG 59.002 52.381 0.00 0.00 37.07 5.28
46 47 3.000727 CAGTGTCAATTACCTCGAACCC 58.999 50.000 0.00 0.00 0.00 4.11
47 48 2.415512 GCAGTGTCAATTACCTCGAACC 59.584 50.000 0.00 0.00 0.00 3.62
48 49 3.326747 AGCAGTGTCAATTACCTCGAAC 58.673 45.455 0.00 0.00 0.00 3.95
49 50 3.678056 AGCAGTGTCAATTACCTCGAA 57.322 42.857 0.00 0.00 0.00 3.71
50 51 4.014406 TCTAGCAGTGTCAATTACCTCGA 58.986 43.478 0.00 0.00 0.00 4.04
51 52 4.371855 TCTAGCAGTGTCAATTACCTCG 57.628 45.455 0.00 0.00 0.00 4.63
52 53 6.258947 GGATTTCTAGCAGTGTCAATTACCTC 59.741 42.308 0.00 0.00 0.00 3.85
53 54 6.069963 AGGATTTCTAGCAGTGTCAATTACCT 60.070 38.462 0.00 0.00 0.00 3.08
54 55 6.116126 AGGATTTCTAGCAGTGTCAATTACC 58.884 40.000 0.00 0.00 0.00 2.85
55 56 8.894768 ATAGGATTTCTAGCAGTGTCAATTAC 57.105 34.615 0.00 0.00 0.00 1.89
56 57 9.547753 GAATAGGATTTCTAGCAGTGTCAATTA 57.452 33.333 0.00 0.00 0.00 1.40
57 58 8.270744 AGAATAGGATTTCTAGCAGTGTCAATT 58.729 33.333 0.00 0.00 34.21 2.32
58 59 7.800092 AGAATAGGATTTCTAGCAGTGTCAAT 58.200 34.615 0.00 0.00 34.21 2.57
59 60 7.187824 AGAATAGGATTTCTAGCAGTGTCAA 57.812 36.000 0.00 0.00 34.21 3.18
60 61 6.798427 AGAATAGGATTTCTAGCAGTGTCA 57.202 37.500 0.00 0.00 34.21 3.58
61 62 8.198109 TGTAAGAATAGGATTTCTAGCAGTGTC 58.802 37.037 0.00 0.00 34.89 3.67
62 63 8.079211 TGTAAGAATAGGATTTCTAGCAGTGT 57.921 34.615 0.00 0.00 34.89 3.55
63 64 8.986847 CATGTAAGAATAGGATTTCTAGCAGTG 58.013 37.037 0.00 0.00 34.89 3.66
64 65 7.659390 GCATGTAAGAATAGGATTTCTAGCAGT 59.341 37.037 0.00 0.00 34.89 4.40
65 66 7.877097 AGCATGTAAGAATAGGATTTCTAGCAG 59.123 37.037 0.00 0.00 34.89 4.24
66 67 7.739825 AGCATGTAAGAATAGGATTTCTAGCA 58.260 34.615 0.00 0.00 34.89 3.49
67 68 7.333174 GGAGCATGTAAGAATAGGATTTCTAGC 59.667 40.741 0.00 0.00 34.89 3.42
68 69 8.592809 AGGAGCATGTAAGAATAGGATTTCTAG 58.407 37.037 0.00 0.00 34.89 2.43
69 70 8.497910 AGGAGCATGTAAGAATAGGATTTCTA 57.502 34.615 0.00 0.00 34.89 2.10
70 71 7.385894 AGGAGCATGTAAGAATAGGATTTCT 57.614 36.000 0.00 0.00 37.56 2.52
71 72 8.348507 CAAAGGAGCATGTAAGAATAGGATTTC 58.651 37.037 0.00 0.00 0.00 2.17
72 73 7.286316 CCAAAGGAGCATGTAAGAATAGGATTT 59.714 37.037 0.00 0.00 0.00 2.17
73 74 6.774656 CCAAAGGAGCATGTAAGAATAGGATT 59.225 38.462 0.00 0.00 0.00 3.01
74 75 6.302269 CCAAAGGAGCATGTAAGAATAGGAT 58.698 40.000 0.00 0.00 0.00 3.24
75 76 5.684704 CCAAAGGAGCATGTAAGAATAGGA 58.315 41.667 0.00 0.00 0.00 2.94
76 77 4.276926 GCCAAAGGAGCATGTAAGAATAGG 59.723 45.833 0.00 0.00 0.00 2.57
77 78 5.128919 AGCCAAAGGAGCATGTAAGAATAG 58.871 41.667 0.00 0.00 0.00 1.73
78 79 5.116084 AGCCAAAGGAGCATGTAAGAATA 57.884 39.130 0.00 0.00 0.00 1.75
79 80 3.973425 AGCCAAAGGAGCATGTAAGAAT 58.027 40.909 0.00 0.00 0.00 2.40
80 81 3.439857 AGCCAAAGGAGCATGTAAGAA 57.560 42.857 0.00 0.00 0.00 2.52
81 82 3.439857 AAGCCAAAGGAGCATGTAAGA 57.560 42.857 0.00 0.00 0.00 2.10
82 83 5.643379 TTAAAGCCAAAGGAGCATGTAAG 57.357 39.130 0.00 0.00 0.00 2.34
83 84 7.396055 AGTTATTAAAGCCAAAGGAGCATGTAA 59.604 33.333 0.00 0.00 0.00 2.41
84 85 6.889722 AGTTATTAAAGCCAAAGGAGCATGTA 59.110 34.615 0.00 0.00 0.00 2.29
85 86 5.716703 AGTTATTAAAGCCAAAGGAGCATGT 59.283 36.000 0.00 0.00 0.00 3.21
86 87 6.212888 AGTTATTAAAGCCAAAGGAGCATG 57.787 37.500 0.00 0.00 0.00 4.06
87 88 6.889722 TGTAGTTATTAAAGCCAAAGGAGCAT 59.110 34.615 0.00 0.00 0.00 3.79
88 89 6.242396 TGTAGTTATTAAAGCCAAAGGAGCA 58.758 36.000 0.00 0.00 0.00 4.26
89 90 6.753107 TGTAGTTATTAAAGCCAAAGGAGC 57.247 37.500 0.00 0.00 0.00 4.70
90 91 9.832445 TCTATGTAGTTATTAAAGCCAAAGGAG 57.168 33.333 0.00 0.00 0.00 3.69
91 92 9.832445 CTCTATGTAGTTATTAAAGCCAAAGGA 57.168 33.333 0.00 0.00 0.00 3.36
92 93 8.560374 GCTCTATGTAGTTATTAAAGCCAAAGG 58.440 37.037 0.00 0.00 0.00 3.11
93 94 9.109393 TGCTCTATGTAGTTATTAAAGCCAAAG 57.891 33.333 0.00 0.00 0.00 2.77
94 95 9.456147 TTGCTCTATGTAGTTATTAAAGCCAAA 57.544 29.630 0.00 0.00 0.00 3.28
95 96 9.456147 TTTGCTCTATGTAGTTATTAAAGCCAA 57.544 29.630 0.00 0.00 0.00 4.52
96 97 9.456147 TTTTGCTCTATGTAGTTATTAAAGCCA 57.544 29.630 0.00 0.00 0.00 4.75
97 98 9.717892 GTTTTGCTCTATGTAGTTATTAAAGCC 57.282 33.333 0.00 0.00 0.00 4.35
107 108 8.616076 GCATATTTCTGTTTTGCTCTATGTAGT 58.384 33.333 0.00 0.00 0.00 2.73
108 109 8.834465 AGCATATTTCTGTTTTGCTCTATGTAG 58.166 33.333 0.00 0.00 39.32 2.74
124 125 3.819564 TCGCAGGTGTAGCATATTTCT 57.180 42.857 0.00 0.00 0.00 2.52
129 130 2.293677 CTGTTCGCAGGTGTAGCATA 57.706 50.000 0.00 0.00 41.40 3.14
150 151 9.558891 GTAATTACGTAGTTGCATAACATAACG 57.441 33.333 13.06 8.58 37.78 3.18
155 156 9.650539 TTAAGGTAATTACGTAGTTGCATAACA 57.349 29.630 17.90 1.30 37.78 2.41
158 159 9.650539 TGTTTAAGGTAATTACGTAGTTGCATA 57.349 29.630 17.90 9.38 37.78 3.14
159 160 8.445493 GTGTTTAAGGTAATTACGTAGTTGCAT 58.555 33.333 17.90 10.14 37.78 3.96
160 161 7.656948 AGTGTTTAAGGTAATTACGTAGTTGCA 59.343 33.333 17.90 5.23 37.78 4.08
161 162 8.021955 AGTGTTTAAGGTAATTACGTAGTTGC 57.978 34.615 13.06 11.41 37.78 4.17
181 182 1.541379 GGGGCGGTTTGATTAGTGTT 58.459 50.000 0.00 0.00 0.00 3.32
203 204 0.406361 ACGGGCCACCCTAAAAATCA 59.594 50.000 4.39 0.00 42.67 2.57
204 205 0.815095 CACGGGCCACCCTAAAAATC 59.185 55.000 4.39 0.00 42.67 2.17
205 206 1.254975 GCACGGGCCACCCTAAAAAT 61.255 55.000 4.39 0.00 42.67 1.82
221 222 1.375523 CGTCACTAGTTGGGGGCAC 60.376 63.158 0.00 0.00 0.00 5.01
238 239 4.201580 GCTGATTTGGCGGTTTTTAATTCG 60.202 41.667 0.00 0.00 0.00 3.34
239 240 4.688413 TGCTGATTTGGCGGTTTTTAATTC 59.312 37.500 0.00 0.00 0.00 2.17
250 251 0.168788 ACGTGATTGCTGATTTGGCG 59.831 50.000 0.00 0.00 0.00 5.69
267 268 4.939052 AGGGATTCTCACATACCTTACG 57.061 45.455 0.00 0.00 32.90 3.18
269 270 5.452255 ACGTAGGGATTCTCACATACCTTA 58.548 41.667 0.00 0.00 38.59 2.69
365 366 7.656137 CCATGCTATTCTTACGTATTACCAGTT 59.344 37.037 0.00 0.00 0.00 3.16
366 367 7.152645 CCATGCTATTCTTACGTATTACCAGT 58.847 38.462 0.00 0.00 0.00 4.00
412 413 0.533978 AGGTGTGCATGCGTGTGTTA 60.534 50.000 14.09 0.00 0.00 2.41
416 417 1.300971 GATGAGGTGTGCATGCGTGT 61.301 55.000 14.09 0.00 0.00 4.49
420 421 2.475466 CCGGATGAGGTGTGCATGC 61.475 63.158 11.82 11.82 0.00 4.06
439 440 3.570926 ATCTTTCTCGCACTACAACGA 57.429 42.857 0.00 0.00 36.73 3.85
510 511 5.763698 TCTTGAATCCATCATGCATTCTCTC 59.236 40.000 2.92 0.00 38.03 3.20
523 543 1.500474 TCTCCGCCTCTTGAATCCAT 58.500 50.000 0.00 0.00 0.00 3.41
559 579 1.078759 CACCGCTCCTAACTTGCTCG 61.079 60.000 0.00 0.00 0.00 5.03
577 597 4.529219 CAGGTCATAGCCGCCGCA 62.529 66.667 0.00 0.00 37.52 5.69
588 608 0.318441 GTAGCAGCACTCACAGGTCA 59.682 55.000 0.00 0.00 0.00 4.02
589 609 0.605589 AGTAGCAGCACTCACAGGTC 59.394 55.000 0.00 0.00 0.00 3.85
590 610 1.821753 CTAGTAGCAGCACTCACAGGT 59.178 52.381 0.00 0.00 0.00 4.00
591 611 2.095461 TCTAGTAGCAGCACTCACAGG 58.905 52.381 0.00 0.00 0.00 4.00
592 612 4.553742 CGTATCTAGTAGCAGCACTCACAG 60.554 50.000 0.00 0.00 0.00 3.66
593 613 3.312697 CGTATCTAGTAGCAGCACTCACA 59.687 47.826 0.00 0.00 0.00 3.58
594 614 3.304123 CCGTATCTAGTAGCAGCACTCAC 60.304 52.174 0.00 0.00 0.00 3.51
595 615 2.879026 CCGTATCTAGTAGCAGCACTCA 59.121 50.000 0.00 0.00 0.00 3.41
863 899 2.171840 CGGAATCTATCTCGGGGATGT 58.828 52.381 0.00 0.00 35.98 3.06
882 918 1.300931 CACACAGTGGACCAGACCG 60.301 63.158 5.31 0.00 0.00 4.79
894 938 0.394192 TGGGAGAAGCTCACACACAG 59.606 55.000 0.00 0.00 39.17 3.66
913 963 1.067565 ACGCACACACGATCAGAAGAT 60.068 47.619 0.00 0.00 37.13 2.40
950 1027 2.314647 CGTACGTGCAACCACCCAG 61.315 63.158 7.22 0.00 38.79 4.45
991 1068 2.023771 CCATCGCCATGATCGACCG 61.024 63.158 11.25 6.82 38.88 4.79
1206 1293 1.139989 CAGGGATAACATACAGCGCG 58.860 55.000 0.00 0.00 0.00 6.86
1207 1294 0.868406 GCAGGGATAACATACAGCGC 59.132 55.000 0.00 0.00 0.00 5.92
1218 1309 0.325577 TGGTGAGCAGAGCAGGGATA 60.326 55.000 0.00 0.00 0.00 2.59
1219 1310 0.987081 ATGGTGAGCAGAGCAGGGAT 60.987 55.000 0.00 0.00 0.00 3.85
1632 1833 1.721926 GAAACGAAAGAGAGCGACAGG 59.278 52.381 0.00 0.00 0.00 4.00
1686 1887 3.503363 GCCAGCCGCATGACACTC 61.503 66.667 0.00 0.00 37.47 3.51
1779 1980 1.139734 GATCGAGCTCTGCAACGGA 59.860 57.895 12.85 0.00 33.43 4.69
1789 1993 1.337260 GGATGCATAACCGATCGAGCT 60.337 52.381 18.66 2.57 0.00 4.09
1829 2041 6.753913 ACTGATATCAGATTAGAGGGCAAA 57.246 37.500 34.16 0.00 46.59 3.68
1841 2054 8.989980 CGATGTTAGTACAGTACTGATATCAGA 58.010 37.037 34.16 17.65 40.50 3.27
1846 2059 8.771766 GTGATCGATGTTAGTACAGTACTGATA 58.228 37.037 29.30 13.12 39.81 2.15
1851 2064 7.376336 GTGATGTGATCGATGTTAGTACAGTAC 59.624 40.741 0.54 2.05 37.77 2.73
1855 2093 6.202516 TGTGATGTGATCGATGTTAGTACA 57.797 37.500 0.54 0.00 38.95 2.90
1963 2227 2.030045 GCCACTAGCTAGCTACCCACT 61.030 57.143 20.67 0.00 38.99 4.00
1966 2230 0.389757 GTGCCACTAGCTAGCTACCC 59.610 60.000 20.67 9.31 44.23 3.69
1971 2235 2.586357 GCCGTGCCACTAGCTAGC 60.586 66.667 20.91 6.62 44.23 3.42
2069 2359 5.969435 ACATATCAATATCATACGCGTACCG 59.031 40.000 23.19 15.91 44.21 4.02
2901 3269 8.636213 GGTTGTAGTACCTCTGCACTATTTATA 58.364 37.037 0.00 0.00 38.42 0.98
2902 3270 7.344871 AGGTTGTAGTACCTCTGCACTATTTAT 59.655 37.037 0.00 0.00 45.44 1.40
2963 3369 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
2964 3370 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
2965 3371 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
2966 3372 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
2967 3373 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
2968 3374 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
2969 3375 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
2970 3376 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
2971 3377 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
2972 3378 1.284982 AAGCGCTTGCGTCTGTACTG 61.285 55.000 24.40 0.00 45.69 2.74
2973 3379 0.242825 TAAGCGCTTGCGTCTGTACT 59.757 50.000 32.23 3.76 45.69 2.73
2974 3380 1.278238 ATAAGCGCTTGCGTCTGTAC 58.722 50.000 32.23 0.00 45.69 2.90
2975 3381 2.159352 TGTATAAGCGCTTGCGTCTGTA 60.159 45.455 32.23 10.34 45.69 2.74
2976 3382 1.278238 GTATAAGCGCTTGCGTCTGT 58.722 50.000 32.23 6.01 45.69 3.41
2977 3383 1.277326 TGTATAAGCGCTTGCGTCTG 58.723 50.000 32.23 0.00 45.69 3.51
2978 3384 2.225068 ATGTATAAGCGCTTGCGTCT 57.775 45.000 32.23 11.40 45.69 4.18
2979 3385 2.792674 TGTATGTATAAGCGCTTGCGTC 59.207 45.455 32.23 18.59 45.69 5.19
2980 3386 2.538449 GTGTATGTATAAGCGCTTGCGT 59.462 45.455 32.23 22.67 45.69 5.24
2981 3387 2.408487 CGTGTATGTATAAGCGCTTGCG 60.408 50.000 32.23 16.38 45.69 4.85
2982 3388 2.792674 TCGTGTATGTATAAGCGCTTGC 59.207 45.455 32.23 20.90 39.58 4.01
2983 3389 5.576337 ATTCGTGTATGTATAAGCGCTTG 57.424 39.130 32.23 11.51 0.00 4.01
2984 3390 6.143438 GTGTATTCGTGTATGTATAAGCGCTT 59.857 38.462 27.97 27.97 0.00 4.68
2985 3391 5.628193 GTGTATTCGTGTATGTATAAGCGCT 59.372 40.000 2.64 2.64 0.00 5.92
2986 3392 5.628193 AGTGTATTCGTGTATGTATAAGCGC 59.372 40.000 0.00 0.00 0.00 5.92
2987 3393 6.854381 TGAGTGTATTCGTGTATGTATAAGCG 59.146 38.462 0.00 0.00 0.00 4.68
2988 3394 8.477709 GTTGAGTGTATTCGTGTATGTATAAGC 58.522 37.037 0.00 0.00 0.00 3.09
2989 3395 9.731819 AGTTGAGTGTATTCGTGTATGTATAAG 57.268 33.333 0.00 0.00 0.00 1.73
2990 3396 9.726232 GAGTTGAGTGTATTCGTGTATGTATAA 57.274 33.333 0.00 0.00 0.00 0.98
2991 3397 9.117183 AGAGTTGAGTGTATTCGTGTATGTATA 57.883 33.333 0.00 0.00 0.00 1.47
2992 3398 7.997482 AGAGTTGAGTGTATTCGTGTATGTAT 58.003 34.615 0.00 0.00 0.00 2.29
2993 3399 7.387119 AGAGTTGAGTGTATTCGTGTATGTA 57.613 36.000 0.00 0.00 0.00 2.29
2994 3400 6.268825 AGAGTTGAGTGTATTCGTGTATGT 57.731 37.500 0.00 0.00 0.00 2.29
2995 3401 8.129211 TCATAGAGTTGAGTGTATTCGTGTATG 58.871 37.037 0.00 0.00 0.00 2.39
2996 3402 8.221965 TCATAGAGTTGAGTGTATTCGTGTAT 57.778 34.615 0.00 0.00 0.00 2.29
2997 3403 7.619964 TCATAGAGTTGAGTGTATTCGTGTA 57.380 36.000 0.00 0.00 0.00 2.90
2998 3404 6.510879 TCATAGAGTTGAGTGTATTCGTGT 57.489 37.500 0.00 0.00 0.00 4.49
2999 3405 6.021390 CGTTCATAGAGTTGAGTGTATTCGTG 60.021 42.308 0.00 0.00 0.00 4.35
3000 3406 6.028368 CGTTCATAGAGTTGAGTGTATTCGT 58.972 40.000 0.00 0.00 0.00 3.85
3001 3407 5.052304 GCGTTCATAGAGTTGAGTGTATTCG 60.052 44.000 0.00 0.00 0.00 3.34
3002 3408 5.052304 CGCGTTCATAGAGTTGAGTGTATTC 60.052 44.000 0.00 0.00 0.00 1.75
3003 3409 4.798907 CGCGTTCATAGAGTTGAGTGTATT 59.201 41.667 0.00 0.00 0.00 1.89
3004 3410 4.352039 CGCGTTCATAGAGTTGAGTGTAT 58.648 43.478 0.00 0.00 0.00 2.29
3005 3411 3.754955 CGCGTTCATAGAGTTGAGTGTA 58.245 45.455 0.00 0.00 0.00 2.90
3006 3412 2.596452 CGCGTTCATAGAGTTGAGTGT 58.404 47.619 0.00 0.00 0.00 3.55
3007 3413 1.321743 GCGCGTTCATAGAGTTGAGTG 59.678 52.381 8.43 0.00 0.00 3.51
3008 3414 1.630148 GCGCGTTCATAGAGTTGAGT 58.370 50.000 8.43 0.00 0.00 3.41
3009 3415 0.567968 CGCGCGTTCATAGAGTTGAG 59.432 55.000 24.19 0.00 0.00 3.02
3010 3416 1.410737 GCGCGCGTTCATAGAGTTGA 61.411 55.000 32.35 0.00 0.00 3.18
3011 3417 1.013323 GCGCGCGTTCATAGAGTTG 60.013 57.895 32.35 0.00 0.00 3.16
3012 3418 1.445410 TGCGCGCGTTCATAGAGTT 60.445 52.632 32.35 0.00 0.00 3.01
3013 3419 2.158959 GTGCGCGCGTTCATAGAGT 61.159 57.895 32.35 0.00 0.00 3.24
3014 3420 2.158330 TGTGCGCGCGTTCATAGAG 61.158 57.895 32.35 0.00 0.00 2.43
3015 3421 2.126267 TGTGCGCGCGTTCATAGA 60.126 55.556 32.35 2.50 0.00 1.98
3016 3422 2.020016 GTGTGCGCGCGTTCATAG 59.980 61.111 32.35 0.92 0.00 2.23
3017 3423 2.735100 TGTGTGCGCGCGTTCATA 60.735 55.556 32.35 23.57 0.00 2.15
3018 3424 4.368808 GTGTGTGCGCGCGTTCAT 62.369 61.111 32.35 0.00 0.00 2.57
3025 3431 2.434185 ATAGGGTGTGTGTGCGCG 60.434 61.111 0.00 0.00 0.00 6.86
3026 3432 2.106683 GGATAGGGTGTGTGTGCGC 61.107 63.158 0.00 0.00 0.00 6.09
3027 3433 1.449601 GGGATAGGGTGTGTGTGCG 60.450 63.158 0.00 0.00 0.00 5.34
3028 3434 1.200519 TAGGGATAGGGTGTGTGTGC 58.799 55.000 0.00 0.00 0.00 4.57
3029 3435 3.038280 TCATAGGGATAGGGTGTGTGTG 58.962 50.000 0.00 0.00 0.00 3.82
3030 3436 3.309296 CTCATAGGGATAGGGTGTGTGT 58.691 50.000 0.00 0.00 0.00 3.72
3031 3437 2.037772 GCTCATAGGGATAGGGTGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
3032 3438 2.330216 GCTCATAGGGATAGGGTGTGT 58.670 52.381 0.00 0.00 0.00 3.72
3033 3439 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
3034 3440 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
3035 3441 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
3036 3442 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
3037 3443 2.334006 AGGTGCTCATAGGGATAGGG 57.666 55.000 0.00 0.00 0.00 3.53
3038 3444 2.232452 CGAAGGTGCTCATAGGGATAGG 59.768 54.545 0.00 0.00 0.00 2.57
3039 3445 3.157881 TCGAAGGTGCTCATAGGGATAG 58.842 50.000 0.00 0.00 0.00 2.08
3040 3446 3.157881 CTCGAAGGTGCTCATAGGGATA 58.842 50.000 0.00 0.00 0.00 2.59
3041 3447 1.967066 CTCGAAGGTGCTCATAGGGAT 59.033 52.381 0.00 0.00 0.00 3.85
3042 3448 1.063942 TCTCGAAGGTGCTCATAGGGA 60.064 52.381 0.00 0.00 0.00 4.20
3043 3449 1.339610 CTCTCGAAGGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
3044 3450 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
3045 3451 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
3046 3452 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
3047 3453 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
3048 3454 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
3049 3455 1.132262 CTCAGTCTCTCGAAGGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
3050 3456 1.173043 CTCAGTCTCTCGAAGGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
3051 3457 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
3052 3458 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00
3053 3459 1.309499 CGGCTCAGTCTCTCGAAGGT 61.309 60.000 0.00 0.00 0.00 3.50
3054 3460 1.431440 CGGCTCAGTCTCTCGAAGG 59.569 63.158 0.00 0.00 0.00 3.46
3055 3461 1.431440 CCGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
3056 3462 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
3057 3463 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
3058 3464 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
3059 3465 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
3060 3466 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
3061 3467 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
3062 3468 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
3063 3469 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
3064 3470 1.001746 CAGATGATATGCCGGCTCAGT 59.998 52.381 29.70 13.44 0.00 3.41
3065 3471 1.274447 TCAGATGATATGCCGGCTCAG 59.726 52.381 29.70 12.54 0.00 3.35
3066 3472 1.274447 CTCAGATGATATGCCGGCTCA 59.726 52.381 29.70 23.34 0.00 4.26
3067 3473 1.547820 TCTCAGATGATATGCCGGCTC 59.452 52.381 29.70 17.89 0.00 4.70
3068 3474 1.637338 TCTCAGATGATATGCCGGCT 58.363 50.000 29.70 15.76 0.00 5.52
3069 3475 2.687700 ATCTCAGATGATATGCCGGC 57.312 50.000 22.73 22.73 0.00 6.13
3070 3476 5.482006 TGTAAATCTCAGATGATATGCCGG 58.518 41.667 0.00 0.00 0.00 6.13
3071 3477 7.425577 TTTGTAAATCTCAGATGATATGCCG 57.574 36.000 0.00 0.00 0.00 5.69
3072 3478 7.174599 AGCTTTGTAAATCTCAGATGATATGCC 59.825 37.037 0.00 0.00 0.00 4.40
3073 3479 8.097078 AGCTTTGTAAATCTCAGATGATATGC 57.903 34.615 0.00 0.00 0.00 3.14
3075 3481 9.717942 GGTAGCTTTGTAAATCTCAGATGATAT 57.282 33.333 0.00 0.00 0.00 1.63
3076 3482 7.867909 CGGTAGCTTTGTAAATCTCAGATGATA 59.132 37.037 0.00 0.00 0.00 2.15
3077 3483 6.703607 CGGTAGCTTTGTAAATCTCAGATGAT 59.296 38.462 0.00 0.00 0.00 2.45
3078 3484 6.042777 CGGTAGCTTTGTAAATCTCAGATGA 58.957 40.000 0.00 0.00 0.00 2.92
3079 3485 5.812642 ACGGTAGCTTTGTAAATCTCAGATG 59.187 40.000 0.00 0.00 0.00 2.90
3080 3486 5.978814 ACGGTAGCTTTGTAAATCTCAGAT 58.021 37.500 0.00 0.00 0.00 2.90
3081 3487 5.401531 ACGGTAGCTTTGTAAATCTCAGA 57.598 39.130 0.00 0.00 0.00 3.27
3082 3488 6.561614 TCTACGGTAGCTTTGTAAATCTCAG 58.438 40.000 10.34 0.00 0.00 3.35
3083 3489 6.519679 TCTACGGTAGCTTTGTAAATCTCA 57.480 37.500 10.34 0.00 0.00 3.27
3084 3490 7.516943 GCAATCTACGGTAGCTTTGTAAATCTC 60.517 40.741 21.28 8.30 0.00 2.75
3085 3491 6.258068 GCAATCTACGGTAGCTTTGTAAATCT 59.742 38.462 21.28 0.00 0.00 2.40
3086 3492 6.036735 TGCAATCTACGGTAGCTTTGTAAATC 59.963 38.462 21.28 11.62 0.00 2.17
3087 3493 5.878116 TGCAATCTACGGTAGCTTTGTAAAT 59.122 36.000 21.28 4.91 0.00 1.40
3088 3494 5.239351 TGCAATCTACGGTAGCTTTGTAAA 58.761 37.500 21.28 11.70 0.00 2.01
3089 3495 4.823157 TGCAATCTACGGTAGCTTTGTAA 58.177 39.130 21.28 13.24 0.00 2.41
3090 3496 4.459390 TGCAATCTACGGTAGCTTTGTA 57.541 40.909 21.28 17.50 0.00 2.41
3091 3497 3.328382 TGCAATCTACGGTAGCTTTGT 57.672 42.857 21.28 0.00 0.00 2.83
3092 3498 3.002656 CCATGCAATCTACGGTAGCTTTG 59.997 47.826 18.51 18.51 0.00 2.77
3093 3499 3.118408 TCCATGCAATCTACGGTAGCTTT 60.118 43.478 10.34 4.16 0.00 3.51
3094 3500 2.434336 TCCATGCAATCTACGGTAGCTT 59.566 45.455 10.34 4.38 0.00 3.74
3095 3501 2.036475 CTCCATGCAATCTACGGTAGCT 59.964 50.000 10.34 0.00 0.00 3.32
3096 3502 2.224066 ACTCCATGCAATCTACGGTAGC 60.224 50.000 10.34 0.37 0.00 3.58
3097 3503 3.181475 ACACTCCATGCAATCTACGGTAG 60.181 47.826 8.91 8.91 0.00 3.18
3098 3504 2.764010 ACACTCCATGCAATCTACGGTA 59.236 45.455 0.00 0.00 0.00 4.02
3099 3505 1.555075 ACACTCCATGCAATCTACGGT 59.445 47.619 0.00 0.00 0.00 4.83
3100 3506 1.935873 CACACTCCATGCAATCTACGG 59.064 52.381 0.00 0.00 0.00 4.02
3101 3507 1.328680 GCACACTCCATGCAATCTACG 59.671 52.381 0.00 0.00 42.88 3.51
3109 3515 0.670162 ACTGTTTGCACACTCCATGC 59.330 50.000 4.37 0.00 43.68 4.06
3110 3516 4.379813 GGATAACTGTTTGCACACTCCATG 60.380 45.833 4.37 0.00 0.00 3.66
3121 3527 6.436843 AAGGAAATAGCGGATAACTGTTTG 57.563 37.500 0.00 0.00 29.84 2.93
3149 3555 7.170828 CCCCGTAAAAATGGAAAGAAAGAAAAG 59.829 37.037 0.00 0.00 0.00 2.27
3154 4243 5.715434 TCCCCGTAAAAATGGAAAGAAAG 57.285 39.130 0.00 0.00 0.00 2.62
3158 4247 7.582667 AAGATATCCCCGTAAAAATGGAAAG 57.417 36.000 0.00 0.00 0.00 2.62
3161 4250 6.261381 CGAAAAGATATCCCCGTAAAAATGGA 59.739 38.462 0.00 0.00 0.00 3.41
3171 4260 2.902705 TGACCGAAAAGATATCCCCG 57.097 50.000 0.00 0.00 0.00 5.73
3180 4269 5.164100 CGCCAACAATAAATTGACCGAAAAG 60.164 40.000 9.60 0.00 40.14 2.27
3181 4270 4.681942 CGCCAACAATAAATTGACCGAAAA 59.318 37.500 9.60 0.00 40.14 2.29
3199 4288 1.673009 GTGGTCCGGAATTCGCCAA 60.673 57.895 5.23 0.00 33.88 4.52
3231 4320 4.081697 GGACATGTTTAACCATTCCCTTGG 60.082 45.833 0.00 0.00 42.82 3.61
3232 4321 4.526262 TGGACATGTTTAACCATTCCCTTG 59.474 41.667 0.00 0.00 0.00 3.61
3362 4456 1.541233 GGGGCCATGTGACTTCTATCG 60.541 57.143 4.39 0.00 0.00 2.92
3394 4488 1.812571 GTCAACCAAGATCGCCACATT 59.187 47.619 0.00 0.00 0.00 2.71
3396 4490 0.107643 TGTCAACCAAGATCGCCACA 59.892 50.000 0.00 0.00 0.00 4.17
3452 4546 5.163591 CCTTACCCTTTTGTTTTCTTGACGT 60.164 40.000 0.00 0.00 0.00 4.34
3467 4561 2.395619 CACGAGATACCCCTTACCCTT 58.604 52.381 0.00 0.00 0.00 3.95
3474 4568 3.140519 AGAACTATCCACGAGATACCCCT 59.859 47.826 0.00 0.00 36.33 4.79
3494 4588 6.017192 ACACCTCCACTAACTTCATCTAAGA 58.983 40.000 0.00 0.00 38.67 2.10
3527 4624 2.032636 GGTGCGGCGGTTATACATAAAC 60.033 50.000 9.78 0.00 0.00 2.01
3539 4636 3.940640 CATCGATTGGTGCGGCGG 61.941 66.667 9.78 0.00 0.00 6.13
3540 4637 2.252127 AAACATCGATTGGTGCGGCG 62.252 55.000 0.51 0.51 0.00 6.46
3541 4638 0.109319 AAAACATCGATTGGTGCGGC 60.109 50.000 0.00 0.00 0.00 6.53
3545 4643 4.503741 ACTTGGAAAACATCGATTGGTG 57.496 40.909 0.00 0.00 0.00 4.17
3549 4647 6.677913 CAAACCTACTTGGAAAACATCGATT 58.322 36.000 0.00 0.00 39.71 3.34
3583 4681 1.753930 TAGGATTACGTCGTGCTCCA 58.246 50.000 22.52 11.07 0.00 3.86
3608 4706 3.456105 GACAATACGGCGGGGGAGG 62.456 68.421 13.24 0.00 0.00 4.30
3610 4708 3.472726 GGACAATACGGCGGGGGA 61.473 66.667 13.24 0.00 0.00 4.81
3612 4710 1.153046 AATGGACAATACGGCGGGG 60.153 57.895 13.24 0.00 0.00 5.73
3613 4711 1.444119 CCAATGGACAATACGGCGGG 61.444 60.000 13.24 0.00 0.00 6.13
3614 4712 1.444119 CCCAATGGACAATACGGCGG 61.444 60.000 13.24 0.00 0.00 6.13
3615 4713 0.462937 TCCCAATGGACAATACGGCG 60.463 55.000 4.80 4.80 35.03 6.46
3616 4714 1.981256 ATCCCAATGGACAATACGGC 58.019 50.000 0.00 0.00 45.58 5.68
3617 4715 4.079980 TGTATCCCAATGGACAATACGG 57.920 45.455 0.00 0.00 45.58 4.02
3618 4716 5.551233 AGATGTATCCCAATGGACAATACG 58.449 41.667 0.00 0.00 45.58 3.06
3619 4717 6.652481 CAGAGATGTATCCCAATGGACAATAC 59.348 42.308 0.00 6.66 45.58 1.89
3631 4729 1.267261 CCGACGACAGAGATGTATCCC 59.733 57.143 0.00 0.00 0.00 3.85
3641 4739 2.626780 CCTCACAGCCGACGACAGA 61.627 63.158 0.00 0.00 0.00 3.41
3643 4741 4.357947 GCCTCACAGCCGACGACA 62.358 66.667 0.00 0.00 0.00 4.35
3645 4743 3.749064 GAGCCTCACAGCCGACGA 61.749 66.667 0.00 0.00 0.00 4.20
3646 4744 4.803426 GGAGCCTCACAGCCGACG 62.803 72.222 0.00 0.00 0.00 5.12
3654 4752 1.383803 AGAGATGGGGGAGCCTCAC 60.384 63.158 0.00 0.00 36.52 3.51
3668 4766 2.998493 GAGGGAAAGGCAGGAGAGA 58.002 57.895 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.