Multiple sequence alignment - TraesCS2D01G100100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G100100 chr2D 100.000 3878 0 0 1 3878 52062178 52066055 0.000000e+00 7162
1 TraesCS2D01G100100 chr2D 88.889 135 13 2 3744 3877 87298384 87298517 8.620000e-37 165
2 TraesCS2D01G100100 chr2D 88.148 135 14 2 3744 3877 36411980 36411847 4.010000e-35 159
3 TraesCS2D01G100100 chr2B 89.459 3330 170 78 1 3207 81337081 81340352 0.000000e+00 4037
4 TraesCS2D01G100100 chr2B 96.429 112 4 0 3574 3685 81341079 81341190 6.620000e-43 185
5 TraesCS2D01G100100 chr2B 91.667 132 10 1 3076 3207 81345227 81345357 8.560000e-42 182
6 TraesCS2D01G100100 chr2B 91.667 132 9 2 3076 3207 81346272 81346401 8.560000e-42 182
7 TraesCS2D01G100100 chr2B 90.152 132 10 2 3076 3207 81344182 81344310 6.660000e-38 169
8 TraesCS2D01G100100 chr2B 95.652 92 4 0 3489 3580 81346399 81346490 8.680000e-32 148
9 TraesCS2D01G100100 chr2B 94.565 92 5 0 3489 3580 81340350 81340441 4.040000e-30 143
10 TraesCS2D01G100100 chr2B 94.565 92 5 0 3489 3580 81345355 81345446 4.040000e-30 143
11 TraesCS2D01G100100 chr2B 90.217 92 9 0 3489 3580 81344308 81344399 1.890000e-23 121
12 TraesCS2D01G100100 chr2A 92.146 2381 125 33 1 2346 53607940 53610293 0.000000e+00 3304
13 TraesCS2D01G100100 chr2A 92.446 887 41 13 2339 3204 53610322 53611203 0.000000e+00 1243
14 TraesCS2D01G100100 chr2A 92.308 91 7 0 3490 3580 53611205 53611295 3.140000e-26 130
15 TraesCS2D01G100100 chr3D 96.875 288 7 1 3207 3492 489332236 489332523 7.540000e-132 481
16 TraesCS2D01G100100 chr3D 95.932 295 10 1 3205 3497 563382711 563383005 9.750000e-131 477
17 TraesCS2D01G100100 chr3D 88.889 135 13 2 3744 3877 537329437 537329304 8.620000e-37 165
18 TraesCS2D01G100100 chr1D 95.593 295 11 1 3205 3497 29851402 29851696 4.540000e-129 472
19 TraesCS2D01G100100 chr1D 95.593 295 11 1 3205 3497 304710864 304710570 4.540000e-129 472
20 TraesCS2D01G100100 chr1D 95.862 290 10 1 3205 3492 22913259 22913548 5.870000e-128 468
21 TraesCS2D01G100100 chr1A 95.593 295 11 1 3205 3497 311141094 311140800 4.540000e-129 472
22 TraesCS2D01G100100 chr6D 95.593 295 10 2 3205 3497 297242509 297242216 1.630000e-128 470
23 TraesCS2D01G100100 chr6D 89.630 135 12 2 3744 3877 58206194 58206061 1.850000e-38 171
24 TraesCS2D01G100100 chr6D 88.148 135 14 2 3744 3877 453655818 453655951 4.010000e-35 159
25 TraesCS2D01G100100 chr5D 95.563 293 11 1 3207 3497 101211348 101211056 5.870000e-128 468
26 TraesCS2D01G100100 chr5D 95.286 297 10 2 3205 3497 171599448 171599744 5.870000e-128 468
27 TraesCS2D01G100100 chr5A 92.558 215 5 8 3675 3878 622728484 622728270 8.150000e-77 298
28 TraesCS2D01G100100 chr7B 89.908 218 11 8 3671 3878 664217215 664217431 1.780000e-68 270
29 TraesCS2D01G100100 chr6B 88.945 199 7 9 3688 3878 129394890 129395081 8.380000e-57 231
30 TraesCS2D01G100100 chr6B 88.889 135 13 2 3744 3877 643443610 643443477 8.620000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G100100 chr2D 52062178 52066055 3877 False 7162 7162 100.000000 1 3878 1 chr2D.!!$F1 3877
1 TraesCS2D01G100100 chr2B 81337081 81346490 9409 False 590 4037 92.708111 1 3685 9 chr2B.!!$F1 3684
2 TraesCS2D01G100100 chr2A 53607940 53611295 3355 False 1559 3304 92.300000 1 3580 3 chr2A.!!$F1 3579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 395 0.813184 CCCGCAAGTTCTCATGCAAT 59.187 50.0 0.0 0.0 42.68 3.56 F
2239 2327 0.609957 TGGTCTGAAATGCTGCCCTG 60.610 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 2480 0.108377 CAATCCGTCATCCACCGTCA 60.108 55.0 0.0 0.0 0.0 4.35 R
3790 6188 0.179032 TTCCGGCTTTCACTTGCTCA 60.179 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.373570 CCGAGAAGGCATCCAAGAAC 58.626 55.000 0.00 0.00 0.00 3.01
103 104 0.849417 ATTCTCCTTCTGGATGCCCC 59.151 55.000 0.00 0.00 42.29 5.80
281 283 3.646611 TGCTGATTGACCACAAATGTG 57.353 42.857 6.57 6.57 45.23 3.21
300 302 4.778143 CCGCCCTCTCGTTTGGGG 62.778 72.222 10.36 0.00 43.53 4.96
386 395 0.813184 CCCGCAAGTTCTCATGCAAT 59.187 50.000 0.00 0.00 42.68 3.56
422 431 3.304659 CGAGGAATCTAAGAGCAGAGAGC 60.305 52.174 0.00 0.00 46.19 4.09
442 451 1.228245 GCCTGCAAGTTCTCACCCA 60.228 57.895 0.00 0.00 0.00 4.51
447 456 0.823356 GCAAGTTCTCACCCAGGCAA 60.823 55.000 0.00 0.00 0.00 4.52
451 460 3.113514 TTCTCACCCAGGCAACGCA 62.114 57.895 0.00 0.00 46.39 5.24
537 546 1.768684 TTTCGCCAGCCCTTCTCAGT 61.769 55.000 0.00 0.00 0.00 3.41
540 549 2.596851 GCCAGCCCTTCTCAGTCCA 61.597 63.158 0.00 0.00 0.00 4.02
584 593 3.255725 CCAAAGCAGGTGCAAATGTATG 58.744 45.455 4.48 0.00 45.16 2.39
674 690 3.702623 GGGGAGAGGGGGTGGGTA 61.703 72.222 0.00 0.00 0.00 3.69
787 811 2.277126 ATTCCCTCCCTCCCTCCCTG 62.277 65.000 0.00 0.00 0.00 4.45
859 883 1.591863 GTTAGATCGCACGGGAGGC 60.592 63.158 0.00 0.00 0.00 4.70
865 889 4.988598 CGCACGGGAGGCAGTTGT 62.989 66.667 0.00 0.00 0.00 3.32
866 890 2.594592 GCACGGGAGGCAGTTGTT 60.595 61.111 0.00 0.00 0.00 2.83
867 891 2.908073 GCACGGGAGGCAGTTGTTG 61.908 63.158 0.00 0.00 0.00 3.33
868 892 2.113139 ACGGGAGGCAGTTGTTGG 59.887 61.111 0.00 0.00 0.00 3.77
869 893 2.672996 CGGGAGGCAGTTGTTGGG 60.673 66.667 0.00 0.00 0.00 4.12
870 894 2.520968 GGGAGGCAGTTGTTGGGT 59.479 61.111 0.00 0.00 0.00 4.51
871 895 1.152546 GGGAGGCAGTTGTTGGGTT 60.153 57.895 0.00 0.00 0.00 4.11
1071 1102 2.481568 GGTACGTAAAAGAGTTGCACCC 59.518 50.000 0.00 0.00 0.00 4.61
1072 1103 1.601166 ACGTAAAAGAGTTGCACCCC 58.399 50.000 0.00 0.00 0.00 4.95
1088 1119 1.856920 ACCCCCAAGGAAGAGAAAACA 59.143 47.619 0.00 0.00 39.89 2.83
1103 1134 5.007724 AGAGAAAACATTTGGTCGACTTGTC 59.992 40.000 16.46 7.18 0.00 3.18
1119 1157 3.941483 ACTTGTCCTGACTTGTGTTCTTG 59.059 43.478 0.00 0.00 0.00 3.02
1120 1158 3.627395 TGTCCTGACTTGTGTTCTTGT 57.373 42.857 0.00 0.00 0.00 3.16
1121 1159 3.950397 TGTCCTGACTTGTGTTCTTGTT 58.050 40.909 0.00 0.00 0.00 2.83
1125 1163 5.066505 GTCCTGACTTGTGTTCTTGTTTGAT 59.933 40.000 0.00 0.00 0.00 2.57
1162 1208 2.561885 CAGCAGCAGCAGCAGTTC 59.438 61.111 12.92 0.00 45.49 3.01
1165 1211 2.952245 CAGCAGCAGCAGTTCCAC 59.048 61.111 3.17 0.00 45.49 4.02
1213 1259 1.123928 CTAGCTTGTCCCCGGAGAAT 58.876 55.000 0.73 0.00 0.00 2.40
1248 1294 4.120755 CCAAGGAGGGGCAGGAGC 62.121 72.222 0.00 0.00 41.10 4.70
1380 1426 4.080863 AGGGCCTGACAGTAAGTAAATGAG 60.081 45.833 4.50 0.00 0.00 2.90
1545 1591 1.765314 GAGCCATCTCCAGGTACATGT 59.235 52.381 6.79 2.69 33.19 3.21
1601 1675 2.172679 TGATGCATGTGGTTGAGCAAT 58.827 42.857 2.46 0.00 40.76 3.56
1602 1676 2.094442 TGATGCATGTGGTTGAGCAATG 60.094 45.455 2.46 0.00 40.76 2.82
1613 1687 3.119708 GGTTGAGCAATGAACTTAGCTGG 60.120 47.826 0.00 0.00 37.48 4.85
1677 1755 2.709475 CGCAAGCTAATGCCGTCC 59.291 61.111 4.82 0.00 43.47 4.79
1773 1852 7.559533 TGATGTATAATTAGCCCTGCTTTCAAA 59.440 33.333 0.00 0.00 40.44 2.69
1778 1857 8.722480 ATAATTAGCCCTGCTTTCAAATTTTC 57.278 30.769 0.00 0.00 40.44 2.29
1783 1862 5.059161 GCCCTGCTTTCAAATTTTCTTTCT 58.941 37.500 0.00 0.00 0.00 2.52
1828 1907 2.032550 CAGATAAAGCATGTGAAGGGCG 59.967 50.000 0.00 0.00 29.21 6.13
1854 1933 1.059098 ACCAGCTGATCACCTGAACA 58.941 50.000 17.39 0.00 0.00 3.18
1868 1947 2.294791 CCTGAACAGAGAGACGAACACT 59.705 50.000 3.19 0.00 0.00 3.55
1903 1985 8.686334 AGAAGTAATTTGGGTTTGCTACATATG 58.314 33.333 0.00 0.00 0.00 1.78
1913 2001 3.801114 TGCTACATATGCTCGACTTGT 57.199 42.857 1.58 0.00 0.00 3.16
2237 2325 1.941999 GCTGGTCTGAAATGCTGCCC 61.942 60.000 0.00 0.00 0.00 5.36
2239 2327 0.609957 TGGTCTGAAATGCTGCCCTG 60.610 55.000 0.00 0.00 0.00 4.45
2242 2330 1.740025 GTCTGAAATGCTGCCCTGTAC 59.260 52.381 0.00 0.00 0.00 2.90
2243 2331 1.630369 TCTGAAATGCTGCCCTGTACT 59.370 47.619 0.00 0.00 0.00 2.73
2244 2332 2.012673 CTGAAATGCTGCCCTGTACTC 58.987 52.381 0.00 0.00 0.00 2.59
2245 2333 1.350684 TGAAATGCTGCCCTGTACTCA 59.649 47.619 0.00 0.00 0.00 3.41
2246 2334 2.012673 GAAATGCTGCCCTGTACTCAG 58.987 52.381 0.00 0.00 41.01 3.35
2266 2354 2.626840 GGACTCAGGAGTGCTCATTTC 58.373 52.381 12.94 0.00 44.92 2.17
2272 2360 4.654915 TCAGGAGTGCTCATTTCATTTCA 58.345 39.130 1.41 0.00 0.00 2.69
2278 2366 4.217118 AGTGCTCATTTCATTTCAGTGTCC 59.783 41.667 0.00 0.00 0.00 4.02
2315 2405 4.816385 TCTTTCTCGTTGCTGTTTCTGAAT 59.184 37.500 0.00 0.00 0.00 2.57
2325 2415 6.169419 TGCTGTTTCTGAATCTGATAAACG 57.831 37.500 8.87 5.75 33.73 3.60
2341 2434 5.805486 TGATAAACGAGCTACAATGTCTGAC 59.195 40.000 0.00 0.00 0.00 3.51
2346 2439 3.542704 CGAGCTACAATGTCTGACGTTAC 59.457 47.826 14.44 5.74 0.00 2.50
2348 2478 3.189910 AGCTACAATGTCTGACGTTACGA 59.810 43.478 13.03 3.26 0.00 3.43
2350 2480 3.637998 ACAATGTCTGACGTTACGAGT 57.362 42.857 13.03 6.33 0.00 4.18
2354 2484 1.070376 TGTCTGACGTTACGAGTGACG 60.070 52.381 13.03 16.96 46.15 4.35
2358 2488 0.727122 GACGTTACGAGTGACGGTGG 60.727 60.000 21.23 0.00 45.20 4.61
2363 2493 4.478195 CGAGTGACGGTGGATGAC 57.522 61.111 0.00 0.00 38.46 3.06
2366 2496 1.592400 GAGTGACGGTGGATGACGGA 61.592 60.000 0.00 0.00 0.00 4.69
2562 2692 2.651361 CTGCTCCAGAACGACGGT 59.349 61.111 0.00 0.00 32.44 4.83
2613 2743 0.344790 AGGACATCCTCTCCATGGGT 59.655 55.000 13.02 0.00 44.77 4.51
2694 2824 3.610669 CGCGAGGAGGATGGGGAG 61.611 72.222 0.00 0.00 0.00 4.30
2753 2883 4.087892 CAGGAGGGACGGGTGCAG 62.088 72.222 0.00 0.00 0.00 4.41
2889 3019 1.203112 TGGAACTGAGTGAGAGGAGCT 60.203 52.381 0.00 0.00 0.00 4.09
2892 3022 3.704061 GGAACTGAGTGAGAGGAGCTAAT 59.296 47.826 0.00 0.00 0.00 1.73
3000 3140 0.396435 ACGGCAGGACAAGATTGACA 59.604 50.000 0.00 0.00 0.00 3.58
3001 3141 0.798776 CGGCAGGACAAGATTGACAC 59.201 55.000 0.00 0.00 0.00 3.67
3008 3148 0.944386 ACAAGATTGACACGTGGTGC 59.056 50.000 21.57 9.38 36.98 5.01
3049 3189 0.725686 CTGTATGCTGCAGCTGTGAC 59.274 55.000 36.61 26.69 42.66 3.67
3070 3210 7.129109 TGACTCGGTGAAATAGTCATTTTTC 57.871 36.000 0.00 0.00 43.45 2.29
3081 3221 7.905604 AATAGTCATTTTTCTGTCACGATGA 57.094 32.000 0.00 0.00 0.00 2.92
3104 3252 4.453478 ACTCTTGTGTCATGCTTGTGTATG 59.547 41.667 0.00 0.00 37.58 2.39
3109 3257 2.749076 TGTCATGCTTGTGTATGCCTTC 59.251 45.455 0.00 0.00 36.44 3.46
3220 3372 9.823647 AAAACTGATATAAGACTATCCACAGTG 57.176 33.333 0.00 0.00 36.45 3.66
3221 3373 8.768501 AACTGATATAAGACTATCCACAGTGA 57.231 34.615 0.62 0.00 36.45 3.41
3222 3374 8.402798 ACTGATATAAGACTATCCACAGTGAG 57.597 38.462 0.62 0.00 35.31 3.51
3223 3375 8.221251 ACTGATATAAGACTATCCACAGTGAGA 58.779 37.037 0.62 0.00 35.31 3.27
3224 3376 8.628630 TGATATAAGACTATCCACAGTGAGAG 57.371 38.462 0.62 0.00 0.00 3.20
3225 3377 8.221251 TGATATAAGACTATCCACAGTGAGAGT 58.779 37.037 0.62 1.83 39.40 3.24
3226 3378 9.727859 GATATAAGACTATCCACAGTGAGAGTA 57.272 37.037 0.62 0.00 36.96 2.59
3228 3380 6.518208 AAGACTATCCACAGTGAGAGTAAC 57.482 41.667 0.62 0.00 36.96 2.50
3229 3381 5.571285 AGACTATCCACAGTGAGAGTAACA 58.429 41.667 0.62 0.00 36.96 2.41
3230 3382 6.191315 AGACTATCCACAGTGAGAGTAACAT 58.809 40.000 0.62 0.00 36.96 2.71
3231 3383 7.347252 AGACTATCCACAGTGAGAGTAACATA 58.653 38.462 0.62 0.00 36.96 2.29
3232 3384 7.500892 AGACTATCCACAGTGAGAGTAACATAG 59.499 40.741 0.62 0.00 36.96 2.23
3233 3385 5.860941 ATCCACAGTGAGAGTAACATAGG 57.139 43.478 0.62 0.00 0.00 2.57
3234 3386 4.673968 TCCACAGTGAGAGTAACATAGGT 58.326 43.478 0.62 0.00 0.00 3.08
3235 3387 5.823312 TCCACAGTGAGAGTAACATAGGTA 58.177 41.667 0.62 0.00 0.00 3.08
3236 3388 5.886474 TCCACAGTGAGAGTAACATAGGTAG 59.114 44.000 0.62 0.00 0.00 3.18
3237 3389 5.652891 CCACAGTGAGAGTAACATAGGTAGT 59.347 44.000 0.62 0.00 0.00 2.73
3238 3390 6.827251 CCACAGTGAGAGTAACATAGGTAGTA 59.173 42.308 0.62 0.00 0.00 1.82
3239 3391 7.338703 CCACAGTGAGAGTAACATAGGTAGTAA 59.661 40.741 0.62 0.00 0.00 2.24
3240 3392 8.182881 CACAGTGAGAGTAACATAGGTAGTAAC 58.817 40.741 0.00 0.00 0.00 2.50
3241 3393 7.886970 ACAGTGAGAGTAACATAGGTAGTAACA 59.113 37.037 0.00 0.00 0.00 2.41
3242 3394 8.904834 CAGTGAGAGTAACATAGGTAGTAACAT 58.095 37.037 0.00 0.00 0.00 2.71
3243 3395 9.122779 AGTGAGAGTAACATAGGTAGTAACATC 57.877 37.037 0.00 0.00 0.00 3.06
3244 3396 8.900781 GTGAGAGTAACATAGGTAGTAACATCA 58.099 37.037 0.00 0.00 0.00 3.07
3245 3397 8.900781 TGAGAGTAACATAGGTAGTAACATCAC 58.099 37.037 0.00 0.00 0.00 3.06
3246 3398 8.818622 AGAGTAACATAGGTAGTAACATCACA 57.181 34.615 0.00 0.00 0.00 3.58
3247 3399 8.684520 AGAGTAACATAGGTAGTAACATCACAC 58.315 37.037 0.00 0.00 0.00 3.82
3248 3400 8.357290 AGTAACATAGGTAGTAACATCACACA 57.643 34.615 0.00 0.00 0.00 3.72
3249 3401 8.978472 AGTAACATAGGTAGTAACATCACACAT 58.022 33.333 0.00 0.00 0.00 3.21
3252 3404 9.982651 AACATAGGTAGTAACATCACACATATC 57.017 33.333 0.00 0.00 0.00 1.63
3253 3405 9.368416 ACATAGGTAGTAACATCACACATATCT 57.632 33.333 0.00 0.00 0.00 1.98
3257 3409 9.815306 AGGTAGTAACATCACACATATCTAGAT 57.185 33.333 10.73 10.73 0.00 1.98
3277 3429 9.716531 TCTAGATAAAATAGATCATGTGGCAAG 57.283 33.333 0.00 0.00 0.00 4.01
3278 3430 7.211966 AGATAAAATAGATCATGTGGCAAGC 57.788 36.000 0.00 0.00 0.00 4.01
3279 3431 6.774170 AGATAAAATAGATCATGTGGCAAGCA 59.226 34.615 0.00 0.00 0.00 3.91
3280 3432 5.664294 AAAATAGATCATGTGGCAAGCAA 57.336 34.783 0.00 0.00 0.00 3.91
3281 3433 5.864418 AAATAGATCATGTGGCAAGCAAT 57.136 34.783 0.00 0.00 0.00 3.56
3282 3434 6.964807 AAATAGATCATGTGGCAAGCAATA 57.035 33.333 0.00 0.00 0.00 1.90
3283 3435 6.964807 AATAGATCATGTGGCAAGCAATAA 57.035 33.333 0.00 0.00 0.00 1.40
3284 3436 6.964807 ATAGATCATGTGGCAAGCAATAAA 57.035 33.333 0.00 0.00 0.00 1.40
3285 3437 5.864418 AGATCATGTGGCAAGCAATAAAT 57.136 34.783 0.00 0.00 0.00 1.40
3286 3438 5.597806 AGATCATGTGGCAAGCAATAAATG 58.402 37.500 0.00 0.00 0.00 2.32
3287 3439 4.804868 TCATGTGGCAAGCAATAAATGT 57.195 36.364 0.00 0.00 0.00 2.71
3288 3440 5.911378 TCATGTGGCAAGCAATAAATGTA 57.089 34.783 0.00 0.00 0.00 2.29
3289 3441 5.893687 TCATGTGGCAAGCAATAAATGTAG 58.106 37.500 0.00 0.00 0.00 2.74
3290 3442 5.651576 TCATGTGGCAAGCAATAAATGTAGA 59.348 36.000 0.00 0.00 0.00 2.59
3291 3443 5.973899 TGTGGCAAGCAATAAATGTAGAA 57.026 34.783 0.00 0.00 0.00 2.10
3292 3444 6.338214 TGTGGCAAGCAATAAATGTAGAAA 57.662 33.333 0.00 0.00 0.00 2.52
3293 3445 6.934056 TGTGGCAAGCAATAAATGTAGAAAT 58.066 32.000 0.00 0.00 0.00 2.17
3294 3446 6.812656 TGTGGCAAGCAATAAATGTAGAAATG 59.187 34.615 0.00 0.00 0.00 2.32
3295 3447 6.256321 GTGGCAAGCAATAAATGTAGAAATGG 59.744 38.462 0.00 0.00 0.00 3.16
3296 3448 6.154192 TGGCAAGCAATAAATGTAGAAATGGA 59.846 34.615 0.00 0.00 0.00 3.41
3297 3449 6.698766 GGCAAGCAATAAATGTAGAAATGGAG 59.301 38.462 0.00 0.00 0.00 3.86
3298 3450 7.416664 GGCAAGCAATAAATGTAGAAATGGAGA 60.417 37.037 0.00 0.00 0.00 3.71
3299 3451 7.975616 GCAAGCAATAAATGTAGAAATGGAGAA 59.024 33.333 0.00 0.00 0.00 2.87
3300 3452 9.859427 CAAGCAATAAATGTAGAAATGGAGAAA 57.141 29.630 0.00 0.00 0.00 2.52
3303 3455 9.860898 GCAATAAATGTAGAAATGGAGAAAAGT 57.139 29.630 0.00 0.00 0.00 2.66
3306 3458 7.839680 AAATGTAGAAATGGAGAAAAGTGGT 57.160 32.000 0.00 0.00 0.00 4.16
3307 3459 8.934023 AAATGTAGAAATGGAGAAAAGTGGTA 57.066 30.769 0.00 0.00 0.00 3.25
3308 3460 8.934023 AATGTAGAAATGGAGAAAAGTGGTAA 57.066 30.769 0.00 0.00 0.00 2.85
3309 3461 7.739498 TGTAGAAATGGAGAAAAGTGGTAAC 57.261 36.000 0.00 0.00 0.00 2.50
3345 3497 8.803397 ACTAGTAGTATGAGTAACATCACACA 57.197 34.615 0.00 0.00 40.07 3.72
3346 3498 9.409918 ACTAGTAGTATGAGTAACATCACACAT 57.590 33.333 0.00 0.00 40.07 3.21
3352 3504 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
3353 3505 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
3354 3506 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
3355 3507 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
3356 3508 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
3357 3509 5.981088 AACATCACACATATCAAGGCAAA 57.019 34.783 0.00 0.00 0.00 3.68
3358 3510 5.981088 ACATCACACATATCAAGGCAAAA 57.019 34.783 0.00 0.00 0.00 2.44
3359 3511 6.534475 ACATCACACATATCAAGGCAAAAT 57.466 33.333 0.00 0.00 0.00 1.82
3360 3512 6.334989 ACATCACACATATCAAGGCAAAATG 58.665 36.000 0.00 0.00 0.00 2.32
3361 3513 6.153170 ACATCACACATATCAAGGCAAAATGA 59.847 34.615 0.00 0.00 0.00 2.57
3362 3514 6.198650 TCACACATATCAAGGCAAAATGAG 57.801 37.500 0.00 0.00 0.00 2.90
3363 3515 5.711506 TCACACATATCAAGGCAAAATGAGT 59.288 36.000 0.00 0.00 0.00 3.41
3364 3516 6.032094 CACACATATCAAGGCAAAATGAGTC 58.968 40.000 0.00 0.00 0.00 3.36
3365 3517 5.948162 ACACATATCAAGGCAAAATGAGTCT 59.052 36.000 0.00 0.00 0.00 3.24
3366 3518 7.066163 CACACATATCAAGGCAAAATGAGTCTA 59.934 37.037 0.00 0.00 0.00 2.59
3367 3519 7.776969 ACACATATCAAGGCAAAATGAGTCTAT 59.223 33.333 0.00 0.00 0.00 1.98
3368 3520 9.276590 CACATATCAAGGCAAAATGAGTCTATA 57.723 33.333 0.00 0.00 0.00 1.31
3369 3521 9.499479 ACATATCAAGGCAAAATGAGTCTATAG 57.501 33.333 0.00 0.00 0.00 1.31
3370 3522 6.874288 ATCAAGGCAAAATGAGTCTATAGC 57.126 37.500 0.00 0.00 0.00 2.97
3371 3523 5.126067 TCAAGGCAAAATGAGTCTATAGCC 58.874 41.667 0.00 0.00 41.08 3.93
3377 3529 8.848474 GGCAAAATGAGTCTATAGCCTAATAA 57.152 34.615 0.00 0.00 37.89 1.40
3378 3530 9.284968 GGCAAAATGAGTCTATAGCCTAATAAA 57.715 33.333 0.00 0.00 37.89 1.40
3389 3541 9.273016 TCTATAGCCTAATAAATGAAGTGTTGC 57.727 33.333 0.00 0.00 0.00 4.17
3390 3542 7.880160 ATAGCCTAATAAATGAAGTGTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
3391 3543 6.780457 AGCCTAATAAATGAAGTGTTGCAT 57.220 33.333 0.00 0.00 0.00 3.96
3392 3544 6.567050 AGCCTAATAAATGAAGTGTTGCATG 58.433 36.000 0.00 0.00 0.00 4.06
3393 3545 6.153340 AGCCTAATAAATGAAGTGTTGCATGT 59.847 34.615 0.00 0.00 0.00 3.21
3394 3546 6.813152 GCCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
3395 3547 7.973388 GCCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
3396 3548 9.289303 CCTAATAAATGAAGTGTTGCATGTTAC 57.711 33.333 0.00 0.00 0.00 2.50
3397 3549 9.289303 CTAATAAATGAAGTGTTGCATGTTACC 57.711 33.333 0.00 0.00 0.00 2.85
3398 3550 5.528043 AAATGAAGTGTTGCATGTTACCA 57.472 34.783 0.00 0.00 0.00 3.25
3399 3551 3.980646 TGAAGTGTTGCATGTTACCAC 57.019 42.857 0.00 0.00 0.00 4.16
3400 3552 3.282885 TGAAGTGTTGCATGTTACCACA 58.717 40.909 0.00 0.00 37.31 4.17
3401 3553 3.066064 TGAAGTGTTGCATGTTACCACAC 59.934 43.478 7.36 7.36 35.03 3.82
3402 3554 2.649190 AGTGTTGCATGTTACCACACA 58.351 42.857 15.74 0.00 35.03 3.72
3403 3555 3.221771 AGTGTTGCATGTTACCACACAT 58.778 40.909 15.74 1.51 37.93 3.21
3404 3556 4.393834 AGTGTTGCATGTTACCACACATA 58.606 39.130 15.74 0.00 35.51 2.29
3405 3557 5.009631 AGTGTTGCATGTTACCACACATAT 58.990 37.500 15.74 0.00 35.51 1.78
3406 3558 5.094812 GTGTTGCATGTTACCACACATATG 58.905 41.667 10.02 0.00 35.51 1.78
3407 3559 4.764308 TGTTGCATGTTACCACACATATGT 59.236 37.500 1.41 1.41 40.80 2.29
3408 3560 5.242615 TGTTGCATGTTACCACACATATGTT 59.757 36.000 5.37 0.00 36.72 2.71
3409 3561 6.431234 TGTTGCATGTTACCACACATATGTTA 59.569 34.615 5.37 0.00 36.72 2.41
3410 3562 6.429791 TGCATGTTACCACACATATGTTAC 57.570 37.500 5.37 0.00 36.72 2.50
3411 3563 6.176896 TGCATGTTACCACACATATGTTACT 58.823 36.000 5.37 0.00 36.72 2.24
3412 3564 6.315144 TGCATGTTACCACACATATGTTACTC 59.685 38.462 5.37 0.00 36.72 2.59
3413 3565 6.238374 GCATGTTACCACACATATGTTACTCC 60.238 42.308 5.37 0.00 36.72 3.85
3414 3566 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
3415 3567 3.536956 ACCACACATATGTTACTCCCG 57.463 47.619 5.37 0.00 36.72 5.14
3416 3568 3.101437 ACCACACATATGTTACTCCCGA 58.899 45.455 5.37 0.00 36.72 5.14
3417 3569 3.118884 ACCACACATATGTTACTCCCGAC 60.119 47.826 5.37 0.00 36.72 4.79
3418 3570 3.132289 CCACACATATGTTACTCCCGACT 59.868 47.826 5.37 0.00 36.72 4.18
3419 3571 4.340097 CCACACATATGTTACTCCCGACTA 59.660 45.833 5.37 0.00 36.72 2.59
3420 3572 5.010719 CCACACATATGTTACTCCCGACTAT 59.989 44.000 5.37 0.00 36.72 2.12
3421 3573 6.208007 CCACACATATGTTACTCCCGACTATA 59.792 42.308 5.37 0.00 36.72 1.31
3422 3574 7.306213 CACACATATGTTACTCCCGACTATAG 58.694 42.308 5.37 0.00 36.72 1.31
3423 3575 7.174426 CACACATATGTTACTCCCGACTATAGA 59.826 40.741 5.37 0.00 36.72 1.98
3424 3576 7.390996 ACACATATGTTACTCCCGACTATAGAG 59.609 40.741 5.37 0.00 34.46 2.43
3425 3577 6.885376 ACATATGTTACTCCCGACTATAGAGG 59.115 42.308 6.78 9.19 31.70 3.69
3426 3578 4.785346 TGTTACTCCCGACTATAGAGGT 57.215 45.455 6.78 0.00 31.70 3.85
3427 3579 5.894298 TGTTACTCCCGACTATAGAGGTA 57.106 43.478 6.78 0.00 31.70 3.08
3428 3580 5.862845 TGTTACTCCCGACTATAGAGGTAG 58.137 45.833 6.78 8.20 31.70 3.18
3429 3581 5.367937 TGTTACTCCCGACTATAGAGGTAGT 59.632 44.000 16.47 16.47 37.61 2.73
3430 3582 6.554982 TGTTACTCCCGACTATAGAGGTAGTA 59.445 42.308 6.78 12.30 35.14 1.82
3431 3583 7.071196 TGTTACTCCCGACTATAGAGGTAGTAA 59.929 40.741 21.17 21.17 35.14 2.24
3432 3584 5.863965 ACTCCCGACTATAGAGGTAGTAAC 58.136 45.833 6.78 0.00 35.14 2.50
3433 3585 5.367937 ACTCCCGACTATAGAGGTAGTAACA 59.632 44.000 6.78 0.00 35.14 2.41
3434 3586 6.044171 ACTCCCGACTATAGAGGTAGTAACAT 59.956 42.308 6.78 0.00 35.14 2.71
3435 3587 7.236432 ACTCCCGACTATAGAGGTAGTAACATA 59.764 40.741 6.78 0.00 35.14 2.29
3436 3588 7.619050 TCCCGACTATAGAGGTAGTAACATAG 58.381 42.308 6.78 0.00 35.14 2.23
3437 3589 7.455953 TCCCGACTATAGAGGTAGTAACATAGA 59.544 40.741 6.78 0.00 35.14 1.98
3438 3590 7.548780 CCCGACTATAGAGGTAGTAACATAGAC 59.451 44.444 6.78 0.00 35.14 2.59
3439 3591 8.313292 CCGACTATAGAGGTAGTAACATAGACT 58.687 40.741 6.78 0.00 35.14 3.24
3449 3601 8.848182 AGGTAGTAACATAGACTAGTAACATGC 58.152 37.037 0.00 0.00 30.08 4.06
3450 3602 8.627403 GGTAGTAACATAGACTAGTAACATGCA 58.373 37.037 0.00 0.00 30.08 3.96
3453 3605 8.696374 AGTAACATAGACTAGTAACATGCATGT 58.304 33.333 26.61 26.61 44.20 3.21
3469 3621 8.873215 ACATGCATGTTACTAGTCTATGTTAC 57.127 34.615 26.61 0.00 37.90 2.50
3470 3622 8.696374 ACATGCATGTTACTAGTCTATGTTACT 58.304 33.333 26.61 0.00 37.90 2.24
3473 3625 8.627403 TGCATGTTACTAGTCTATGTTACTACC 58.373 37.037 0.00 0.00 0.00 3.18
3474 3626 8.081025 GCATGTTACTAGTCTATGTTACTACCC 58.919 40.741 0.00 0.00 0.00 3.69
3475 3627 9.128404 CATGTTACTAGTCTATGTTACTACCCA 57.872 37.037 0.00 0.00 0.00 4.51
3476 3628 9.878737 ATGTTACTAGTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
3477 3629 9.705103 TGTTACTAGTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
3478 3630 9.962783 GTTACTAGTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
3479 3631 9.705103 TTACTAGTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
3480 3632 8.008513 ACTAGTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
3481 3633 6.235231 AGTCTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
3482 3634 4.814771 GTCTATGTTACTACCCATTGTGGC 59.185 45.833 0.00 0.00 35.79 5.01
3483 3635 4.719773 TCTATGTTACTACCCATTGTGGCT 59.280 41.667 0.00 0.00 35.79 4.75
3484 3636 5.900699 TCTATGTTACTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
3485 3637 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
3486 3638 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
3487 3639 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
3564 3716 0.370273 GACGGTGAAATGCGCTACAG 59.630 55.000 9.73 3.63 0.00 2.74
3571 3723 1.804151 GAAATGCGCTACAGAACACCA 59.196 47.619 9.73 0.00 0.00 4.17
3579 4375 3.146066 GCTACAGAACACCACCAATCAA 58.854 45.455 0.00 0.00 0.00 2.57
3591 4387 7.661040 ACACCACCAATCAAATAGAAAAGAAG 58.339 34.615 0.00 0.00 0.00 2.85
3629 4425 1.298859 CCTTGACAACTGTAGCCGCC 61.299 60.000 0.00 0.00 0.00 6.13
3649 4445 3.625313 GCCAGAAGTAATCCAAGAGCTTC 59.375 47.826 0.00 0.00 36.69 3.86
3685 4481 3.619233 ATGAACGTTTGTGGTTGTAGC 57.381 42.857 0.46 0.00 0.00 3.58
3687 4483 2.353269 TGAACGTTTGTGGTTGTAGCTG 59.647 45.455 0.46 0.00 0.00 4.24
3688 4484 0.661020 ACGTTTGTGGTTGTAGCTGC 59.339 50.000 0.00 0.00 0.00 5.25
3689 4485 0.944386 CGTTTGTGGTTGTAGCTGCT 59.056 50.000 7.57 7.57 0.00 4.24
3690 4486 1.334059 CGTTTGTGGTTGTAGCTGCTG 60.334 52.381 13.43 0.00 0.00 4.41
3691 4487 0.667993 TTTGTGGTTGTAGCTGCTGC 59.332 50.000 13.43 12.15 40.05 5.25
3703 4499 0.108804 GCTGCTGCTGAATGTGCATT 60.109 50.000 10.92 0.00 39.86 3.56
3705 4501 2.683968 CTGCTGCTGAATGTGCATTTT 58.316 42.857 0.00 0.00 39.86 1.82
3742 6140 6.291377 TCCTTTATATGTGATGAAGTGAGCC 58.709 40.000 0.00 0.00 0.00 4.70
3743 6141 5.178252 CCTTTATATGTGATGAAGTGAGCCG 59.822 44.000 0.00 0.00 0.00 5.52
3744 6142 1.939974 TATGTGATGAAGTGAGCCGC 58.060 50.000 0.00 0.00 0.00 6.53
3745 6143 0.251354 ATGTGATGAAGTGAGCCGCT 59.749 50.000 0.00 0.00 0.00 5.52
3747 6145 0.390340 GTGATGAAGTGAGCCGCTGA 60.390 55.000 0.00 0.00 0.00 4.26
3752 6150 0.391661 GAAGTGAGCCGCTGAATGGA 60.392 55.000 0.00 0.00 0.00 3.41
3753 6151 0.392193 AAGTGAGCCGCTGAATGGAG 60.392 55.000 0.00 0.00 0.00 3.86
3755 6153 1.078918 TGAGCCGCTGAATGGAGTG 60.079 57.895 0.00 0.00 0.00 3.51
3756 6154 1.078848 GAGCCGCTGAATGGAGTGT 60.079 57.895 0.00 0.00 0.00 3.55
3759 6157 0.955428 GCCGCTGAATGGAGTGTTGA 60.955 55.000 0.00 0.00 0.00 3.18
3760 6158 1.522668 CCGCTGAATGGAGTGTTGAA 58.477 50.000 0.00 0.00 0.00 2.69
3762 6160 2.293122 CCGCTGAATGGAGTGTTGAAAA 59.707 45.455 0.00 0.00 0.00 2.29
3789 6187 4.537936 GGATTATCTCCGAGTTGTTTGC 57.462 45.455 0.00 0.00 33.29 3.68
3790 6188 4.192317 GGATTATCTCCGAGTTGTTTGCT 58.808 43.478 0.00 0.00 33.29 3.91
3791 6189 4.034510 GGATTATCTCCGAGTTGTTTGCTG 59.965 45.833 0.00 0.00 33.29 4.41
3793 6191 2.154854 TCTCCGAGTTGTTTGCTGAG 57.845 50.000 0.00 0.00 0.00 3.35
3794 6192 0.514691 CTCCGAGTTGTTTGCTGAGC 59.485 55.000 0.00 0.00 0.00 4.26
3795 6193 0.179059 TCCGAGTTGTTTGCTGAGCA 60.179 50.000 1.40 1.40 36.47 4.26
3805 6203 0.670162 TTGCTGAGCAAGTGAAAGCC 59.330 50.000 17.04 0.00 43.99 4.35
3807 6205 1.871772 CTGAGCAAGTGAAAGCCGG 59.128 57.895 0.00 0.00 0.00 6.13
3808 6206 0.603707 CTGAGCAAGTGAAAGCCGGA 60.604 55.000 5.05 0.00 0.00 5.14
3809 6207 0.179032 TGAGCAAGTGAAAGCCGGAA 60.179 50.000 5.05 0.00 0.00 4.30
3810 6208 0.951558 GAGCAAGTGAAAGCCGGAAA 59.048 50.000 5.05 0.00 0.00 3.13
3811 6209 1.541588 GAGCAAGTGAAAGCCGGAAAT 59.458 47.619 5.05 0.00 0.00 2.17
3812 6210 2.747446 GAGCAAGTGAAAGCCGGAAATA 59.253 45.455 5.05 0.00 0.00 1.40
3813 6211 2.749621 AGCAAGTGAAAGCCGGAAATAG 59.250 45.455 5.05 0.00 0.00 1.73
3814 6212 2.159379 GCAAGTGAAAGCCGGAAATAGG 60.159 50.000 5.05 0.00 0.00 2.57
3821 6219 2.595095 CCGGAAATAGGCCAGGCA 59.405 61.111 15.19 0.00 0.00 4.75
3823 6221 0.468029 CCGGAAATAGGCCAGGCAAT 60.468 55.000 15.19 2.84 0.00 3.56
3825 6223 2.582052 CGGAAATAGGCCAGGCAATTA 58.418 47.619 15.19 2.70 0.00 1.40
3826 6224 3.157087 CGGAAATAGGCCAGGCAATTAT 58.843 45.455 15.19 5.16 0.00 1.28
3829 6227 4.219288 GGAAATAGGCCAGGCAATTATCTG 59.781 45.833 15.19 1.46 0.00 2.90
3830 6228 4.729552 AATAGGCCAGGCAATTATCTGA 57.270 40.909 15.19 0.00 33.11 3.27
3831 6229 2.355010 AGGCCAGGCAATTATCTGAC 57.645 50.000 15.19 0.00 33.11 3.51
3832 6230 1.565759 AGGCCAGGCAATTATCTGACA 59.434 47.619 15.19 0.00 33.11 3.58
3833 6231 1.678101 GGCCAGGCAATTATCTGACAC 59.322 52.381 15.19 0.00 33.11 3.67
3835 6233 2.945440 GCCAGGCAATTATCTGACACCA 60.945 50.000 6.55 0.00 33.11 4.17
3837 6235 3.763360 CCAGGCAATTATCTGACACCAAA 59.237 43.478 8.32 0.00 33.11 3.28
3838 6236 4.403432 CCAGGCAATTATCTGACACCAAAT 59.597 41.667 8.32 0.00 33.11 2.32
3840 6238 4.114794 GGCAATTATCTGACACCAAATGC 58.885 43.478 0.00 0.00 0.00 3.56
3841 6239 3.792956 GCAATTATCTGACACCAAATGCG 59.207 43.478 0.00 0.00 0.00 4.73
3842 6240 4.675146 GCAATTATCTGACACCAAATGCGT 60.675 41.667 0.00 0.00 0.00 5.24
3844 6242 5.643379 ATTATCTGACACCAAATGCGTTT 57.357 34.783 0.00 0.00 0.00 3.60
3847 6245 2.884012 TCTGACACCAAATGCGTTTGAT 59.116 40.909 28.87 12.92 46.03 2.57
3848 6246 2.981805 CTGACACCAAATGCGTTTGATG 59.018 45.455 28.87 25.45 46.03 3.07
3849 6247 2.620585 TGACACCAAATGCGTTTGATGA 59.379 40.909 28.73 7.81 46.03 2.92
3850 6248 3.236816 GACACCAAATGCGTTTGATGAG 58.763 45.455 28.73 16.09 46.03 2.90
3851 6249 2.622942 ACACCAAATGCGTTTGATGAGT 59.377 40.909 28.73 16.68 46.03 3.41
3852 6250 2.981805 CACCAAATGCGTTTGATGAGTG 59.018 45.455 28.87 22.77 46.03 3.51
3853 6251 2.622942 ACCAAATGCGTTTGATGAGTGT 59.377 40.909 28.87 15.79 46.03 3.55
3854 6252 2.981805 CCAAATGCGTTTGATGAGTGTG 59.018 45.455 28.87 8.90 46.03 3.82
3855 6253 2.981805 CAAATGCGTTTGATGAGTGTGG 59.018 45.455 24.19 0.00 46.03 4.17
3856 6254 2.183478 ATGCGTTTGATGAGTGTGGA 57.817 45.000 0.00 0.00 0.00 4.02
3857 6255 1.960417 TGCGTTTGATGAGTGTGGAA 58.040 45.000 0.00 0.00 0.00 3.53
3858 6256 2.293170 TGCGTTTGATGAGTGTGGAAA 58.707 42.857 0.00 0.00 0.00 3.13
3859 6257 2.290367 TGCGTTTGATGAGTGTGGAAAG 59.710 45.455 0.00 0.00 0.00 2.62
3860 6258 2.918131 GCGTTTGATGAGTGTGGAAAGC 60.918 50.000 0.00 0.00 0.00 3.51
3861 6259 2.290367 CGTTTGATGAGTGTGGAAAGCA 59.710 45.455 0.00 0.00 0.00 3.91
3862 6260 3.243035 CGTTTGATGAGTGTGGAAAGCAA 60.243 43.478 0.00 0.00 0.00 3.91
3866 6264 6.647334 TTGATGAGTGTGGAAAGCAATTTA 57.353 33.333 0.00 0.00 0.00 1.40
3867 6265 6.647334 TGATGAGTGTGGAAAGCAATTTAA 57.353 33.333 0.00 0.00 0.00 1.52
3868 6266 6.680810 TGATGAGTGTGGAAAGCAATTTAAG 58.319 36.000 0.00 0.00 0.00 1.85
3870 6268 6.899393 TGAGTGTGGAAAGCAATTTAAGAT 57.101 33.333 0.00 0.00 0.00 2.40
3872 6270 6.489700 TGAGTGTGGAAAGCAATTTAAGATGA 59.510 34.615 0.00 0.00 0.00 2.92
3873 6271 6.917533 AGTGTGGAAAGCAATTTAAGATGAG 58.082 36.000 0.00 0.00 0.00 2.90
3874 6272 6.716628 AGTGTGGAAAGCAATTTAAGATGAGA 59.283 34.615 0.00 0.00 0.00 3.27
3875 6273 7.231317 AGTGTGGAAAGCAATTTAAGATGAGAA 59.769 33.333 0.00 0.00 0.00 2.87
3876 6274 7.327032 GTGTGGAAAGCAATTTAAGATGAGAAC 59.673 37.037 0.00 0.00 0.00 3.01
3877 6275 7.231317 TGTGGAAAGCAATTTAAGATGAGAACT 59.769 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 0.391130 TCGATCTTTTGACTGCGGGG 60.391 55.000 0.00 0.00 0.00 5.73
304 306 1.120530 GTCATTTCCGGGCCTCTCTA 58.879 55.000 0.84 0.00 0.00 2.43
386 395 4.880120 AGATTCCTCGAGTCGTTGTATGTA 59.120 41.667 13.12 0.00 0.00 2.29
422 431 2.328099 GGTGAGAACTTGCAGGCCG 61.328 63.158 0.00 0.00 0.00 6.13
442 451 2.331451 GCGACTTTTGCGTTGCCT 59.669 55.556 0.00 0.00 38.16 4.75
447 456 0.602638 TCTCATGGCGACTTTTGCGT 60.603 50.000 0.00 0.00 0.00 5.24
451 460 3.685139 TCTCTTCTCATGGCGACTTTT 57.315 42.857 0.00 0.00 0.00 2.27
525 534 2.654079 CGCTGGACTGAGAAGGGCT 61.654 63.158 0.00 0.00 0.00 5.19
537 546 2.624868 TTACGTACGTGGCGCTGGA 61.625 57.895 30.25 5.06 0.00 3.86
540 549 0.730494 GAAGTTACGTACGTGGCGCT 60.730 55.000 30.25 18.13 0.00 5.92
573 582 5.475564 AGCATGCATAGATCATACATTTGCA 59.524 36.000 21.98 0.00 42.15 4.08
584 593 4.381185 CCTCTCTCTGAGCATGCATAGATC 60.381 50.000 21.98 8.78 41.35 2.75
674 690 2.563039 TCCTTATTCCTTCCGAGGGT 57.437 50.000 0.00 0.00 43.72 4.34
787 811 2.281345 CGGATGGATGAGGCAGGC 60.281 66.667 0.00 0.00 0.00 4.85
859 883 2.231235 GGCCTATGAAACCCAACAACTG 59.769 50.000 0.00 0.00 0.00 3.16
865 889 1.431243 ACCTTGGCCTATGAAACCCAA 59.569 47.619 3.32 0.00 36.08 4.12
866 890 1.080638 ACCTTGGCCTATGAAACCCA 58.919 50.000 3.32 0.00 0.00 4.51
867 891 1.824852 CAACCTTGGCCTATGAAACCC 59.175 52.381 3.32 0.00 0.00 4.11
868 892 2.492088 GACAACCTTGGCCTATGAAACC 59.508 50.000 3.32 0.00 0.00 3.27
869 893 3.421844 AGACAACCTTGGCCTATGAAAC 58.578 45.455 3.32 0.00 36.67 2.78
870 894 3.073798 TGAGACAACCTTGGCCTATGAAA 59.926 43.478 3.32 0.00 36.67 2.69
871 895 2.642311 TGAGACAACCTTGGCCTATGAA 59.358 45.455 3.32 0.00 36.67 2.57
906 937 3.236003 AAAGACTCGGACCACGGCC 62.236 63.158 0.00 0.00 44.45 6.13
1054 1085 0.879090 GGGGGTGCAACTCTTTTACG 59.121 55.000 0.00 0.00 37.58 3.18
1055 1086 1.989706 TGGGGGTGCAACTCTTTTAC 58.010 50.000 0.00 0.00 37.58 2.01
1056 1087 2.593026 CTTGGGGGTGCAACTCTTTTA 58.407 47.619 0.00 0.00 37.58 1.52
1057 1088 1.413118 CTTGGGGGTGCAACTCTTTT 58.587 50.000 0.00 0.00 37.58 2.27
1071 1102 4.344968 ACCAAATGTTTTCTCTTCCTTGGG 59.655 41.667 0.00 0.00 37.08 4.12
1072 1103 5.532557 GACCAAATGTTTTCTCTTCCTTGG 58.467 41.667 0.00 0.00 38.41 3.61
1088 1119 2.368875 AGTCAGGACAAGTCGACCAAAT 59.631 45.455 13.01 0.00 30.94 2.32
1103 1134 4.963276 TCAAACAAGAACACAAGTCAGG 57.037 40.909 0.00 0.00 0.00 3.86
1119 1157 6.694411 GTGATACATCTGCCATCAAATCAAAC 59.306 38.462 0.00 0.00 30.85 2.93
1120 1158 6.183360 GGTGATACATCTGCCATCAAATCAAA 60.183 38.462 0.00 0.00 30.85 2.69
1121 1159 5.300034 GGTGATACATCTGCCATCAAATCAA 59.700 40.000 0.00 0.00 30.85 2.57
1125 1163 4.201657 CTGGTGATACATCTGCCATCAAA 58.798 43.478 6.56 0.00 34.16 2.69
1162 1208 2.046988 TGCTGCCTGTGATCGTGG 60.047 61.111 0.00 0.00 0.00 4.94
1165 1211 1.022982 ACATGTGCTGCCTGTGATCG 61.023 55.000 0.00 0.00 0.00 3.69
1213 1259 4.766891 CCTTGGCCTTTCATGAAGAACTTA 59.233 41.667 8.41 0.00 37.57 2.24
1248 1294 1.462731 CGCATCTCCTCCTCCTCCTG 61.463 65.000 0.00 0.00 0.00 3.86
1404 1450 8.332804 AGGAGATTCACCTATGCATTTCTGCT 62.333 42.308 3.54 4.47 41.46 4.24
1592 1662 3.503748 ACCAGCTAAGTTCATTGCTCAAC 59.496 43.478 0.00 0.00 33.03 3.18
1601 1675 5.529800 GGAAACAGTTAACCAGCTAAGTTCA 59.470 40.000 0.88 0.00 0.00 3.18
1602 1676 5.763698 AGGAAACAGTTAACCAGCTAAGTTC 59.236 40.000 0.88 0.00 0.00 3.01
1704 1782 4.778213 AATAACTTGCCTCAGAGCCATA 57.222 40.909 0.00 0.00 0.00 2.74
1740 1819 9.401058 GCAGGGCTAATTATACATCATCTATTT 57.599 33.333 0.00 0.00 0.00 1.40
1755 1834 6.772605 AGAAAATTTGAAAGCAGGGCTAATT 58.227 32.000 0.00 0.00 38.25 1.40
1760 1839 5.059161 AGAAAGAAAATTTGAAAGCAGGGC 58.941 37.500 0.00 0.00 0.00 5.19
1773 1852 7.628580 GCCGAAGCCATAAACTAGAAAGAAAAT 60.629 37.037 0.00 0.00 0.00 1.82
1778 1857 3.938963 TGCCGAAGCCATAAACTAGAAAG 59.061 43.478 0.00 0.00 38.69 2.62
1783 1862 2.627945 CTGTGCCGAAGCCATAAACTA 58.372 47.619 0.00 0.00 38.69 2.24
1854 1933 2.088423 CCTGCTAGTGTTCGTCTCTCT 58.912 52.381 0.00 0.00 0.00 3.10
1868 1947 6.382919 ACCCAAATTACTTCTTACCTGCTA 57.617 37.500 0.00 0.00 0.00 3.49
1925 2013 9.737844 ACCAAGACATGCCAAATTTTATTAAAT 57.262 25.926 0.00 0.00 35.49 1.40
1944 2032 4.202245 TGTGCATAGACCTAACCAAGAC 57.798 45.455 0.00 0.00 0.00 3.01
1946 2034 6.238103 CGTTTATGTGCATAGACCTAACCAAG 60.238 42.308 0.00 0.00 0.00 3.61
2140 2228 7.669722 AGTTACAGGTGACATGGATAACAAAAT 59.330 33.333 11.50 0.00 0.00 1.82
2237 2325 2.752354 CACTCCTGAGTCCTGAGTACAG 59.248 54.545 10.37 0.00 40.20 2.74
2239 2327 1.474879 GCACTCCTGAGTCCTGAGTAC 59.525 57.143 10.37 3.30 40.20 2.73
2242 2330 0.817013 GAGCACTCCTGAGTCCTGAG 59.183 60.000 0.00 4.85 40.20 3.35
2243 2331 0.113190 TGAGCACTCCTGAGTCCTGA 59.887 55.000 0.00 0.00 40.20 3.86
2244 2332 1.193323 ATGAGCACTCCTGAGTCCTG 58.807 55.000 0.00 0.00 40.20 3.86
2245 2333 1.949799 AATGAGCACTCCTGAGTCCT 58.050 50.000 0.00 0.00 40.20 3.85
2246 2334 2.027745 TGAAATGAGCACTCCTGAGTCC 60.028 50.000 0.00 0.00 40.20 3.85
2247 2335 3.325293 TGAAATGAGCACTCCTGAGTC 57.675 47.619 0.00 0.00 40.20 3.36
2248 2336 3.996921 ATGAAATGAGCACTCCTGAGT 57.003 42.857 0.00 0.00 43.61 3.41
2249 2337 4.698780 TGAAATGAAATGAGCACTCCTGAG 59.301 41.667 0.00 0.00 0.00 3.35
2278 2366 4.023707 ACGAGAAAGAAAAATGTGGCTCAG 60.024 41.667 0.00 0.00 0.00 3.35
2315 2405 6.036470 CAGACATTGTAGCTCGTTTATCAGA 58.964 40.000 0.00 0.00 0.00 3.27
2325 2415 3.542704 CGTAACGTCAGACATTGTAGCTC 59.457 47.826 0.41 0.00 0.00 4.09
2341 2434 0.169672 ATCCACCGTCACTCGTAACG 59.830 55.000 0.00 0.00 38.58 3.18
2346 2439 1.514228 CGTCATCCACCGTCACTCG 60.514 63.158 0.00 0.00 39.52 4.18
2348 2478 0.970937 ATCCGTCATCCACCGTCACT 60.971 55.000 0.00 0.00 0.00 3.41
2350 2480 0.108377 CAATCCGTCATCCACCGTCA 60.108 55.000 0.00 0.00 0.00 4.35
2354 2484 2.918712 AGATCAATCCGTCATCCACC 57.081 50.000 0.00 0.00 0.00 4.61
2358 2488 4.878397 ACCTTCAAAGATCAATCCGTCATC 59.122 41.667 0.00 0.00 0.00 2.92
2363 2493 6.494893 TTTGTACCTTCAAAGATCAATCCG 57.505 37.500 0.00 0.00 34.02 4.18
2613 2743 3.071206 GTGGCAGAGGCGGAGAGA 61.071 66.667 0.00 0.00 42.47 3.10
2690 2820 1.404315 CGAGAAACAGGTAGCACTCCC 60.404 57.143 0.00 0.00 0.00 4.30
2694 2824 0.320421 TGCCGAGAAACAGGTAGCAC 60.320 55.000 0.00 0.00 0.00 4.40
2910 3040 2.976840 TTTCGCTTCCGCCATGCAC 61.977 57.895 0.00 0.00 0.00 4.57
2926 3056 5.708697 TCTGAAACTCTGCATGATCATGTTT 59.291 36.000 31.09 23.51 40.80 2.83
3008 3148 2.834549 ACTGTGAGACATTACAGGAGGG 59.165 50.000 8.95 0.00 46.52 4.30
3049 3189 7.095229 TGACAGAAAAATGACTATTTCACCGAG 60.095 37.037 0.00 0.00 36.92 4.63
3081 3221 2.923121 ACACAAGCATGACACAAGAGT 58.077 42.857 0.00 0.00 0.00 3.24
3204 3356 7.173032 TGTTACTCTCACTGTGGATAGTCTTA 58.827 38.462 8.11 0.00 0.00 2.10
3205 3357 6.010850 TGTTACTCTCACTGTGGATAGTCTT 58.989 40.000 8.11 0.00 0.00 3.01
3206 3358 5.571285 TGTTACTCTCACTGTGGATAGTCT 58.429 41.667 8.11 0.00 0.00 3.24
3207 3359 5.899120 TGTTACTCTCACTGTGGATAGTC 57.101 43.478 8.11 0.28 0.00 2.59
3208 3360 6.547880 CCTATGTTACTCTCACTGTGGATAGT 59.452 42.308 8.11 11.01 0.00 2.12
3209 3361 6.547880 ACCTATGTTACTCTCACTGTGGATAG 59.452 42.308 8.11 5.78 0.00 2.08
3210 3362 6.432581 ACCTATGTTACTCTCACTGTGGATA 58.567 40.000 8.11 0.00 0.00 2.59
3211 3363 5.273208 ACCTATGTTACTCTCACTGTGGAT 58.727 41.667 8.11 0.00 0.00 3.41
3212 3364 4.673968 ACCTATGTTACTCTCACTGTGGA 58.326 43.478 8.11 3.58 0.00 4.02
3213 3365 5.652891 ACTACCTATGTTACTCTCACTGTGG 59.347 44.000 8.11 0.00 0.00 4.17
3214 3366 6.761099 ACTACCTATGTTACTCTCACTGTG 57.239 41.667 0.17 0.17 0.00 3.66
3215 3367 7.886970 TGTTACTACCTATGTTACTCTCACTGT 59.113 37.037 0.00 0.00 0.00 3.55
3216 3368 8.277490 TGTTACTACCTATGTTACTCTCACTG 57.723 38.462 0.00 0.00 0.00 3.66
3217 3369 9.122779 GATGTTACTACCTATGTTACTCTCACT 57.877 37.037 0.00 0.00 0.00 3.41
3218 3370 8.900781 TGATGTTACTACCTATGTTACTCTCAC 58.099 37.037 0.00 0.00 0.00 3.51
3219 3371 8.900781 GTGATGTTACTACCTATGTTACTCTCA 58.099 37.037 0.00 0.00 0.00 3.27
3220 3372 8.900781 TGTGATGTTACTACCTATGTTACTCTC 58.099 37.037 0.00 0.00 0.00 3.20
3221 3373 8.684520 GTGTGATGTTACTACCTATGTTACTCT 58.315 37.037 0.00 0.00 0.00 3.24
3222 3374 8.464404 TGTGTGATGTTACTACCTATGTTACTC 58.536 37.037 0.00 0.00 0.00 2.59
3223 3375 8.357290 TGTGTGATGTTACTACCTATGTTACT 57.643 34.615 0.00 0.00 0.00 2.24
3226 3378 9.982651 GATATGTGTGATGTTACTACCTATGTT 57.017 33.333 0.00 0.00 0.00 2.71
3227 3379 9.368416 AGATATGTGTGATGTTACTACCTATGT 57.632 33.333 0.00 0.00 0.00 2.29
3231 3383 9.815306 ATCTAGATATGTGTGATGTTACTACCT 57.185 33.333 2.53 0.00 0.00 3.08
3251 3403 9.716531 CTTGCCACATGATCTATTTTATCTAGA 57.283 33.333 0.00 0.00 0.00 2.43
3252 3404 8.449397 GCTTGCCACATGATCTATTTTATCTAG 58.551 37.037 0.00 0.00 0.00 2.43
3253 3405 7.938490 TGCTTGCCACATGATCTATTTTATCTA 59.062 33.333 0.00 0.00 0.00 1.98
3254 3406 6.774170 TGCTTGCCACATGATCTATTTTATCT 59.226 34.615 0.00 0.00 0.00 1.98
3255 3407 6.973843 TGCTTGCCACATGATCTATTTTATC 58.026 36.000 0.00 0.00 0.00 1.75
3256 3408 6.964807 TGCTTGCCACATGATCTATTTTAT 57.035 33.333 0.00 0.00 0.00 1.40
3257 3409 6.772360 TTGCTTGCCACATGATCTATTTTA 57.228 33.333 0.00 0.00 0.00 1.52
3258 3410 5.664294 TTGCTTGCCACATGATCTATTTT 57.336 34.783 0.00 0.00 0.00 1.82
3259 3411 5.864418 ATTGCTTGCCACATGATCTATTT 57.136 34.783 0.00 0.00 0.00 1.40
3260 3412 6.964807 TTATTGCTTGCCACATGATCTATT 57.035 33.333 0.00 0.00 0.00 1.73
3261 3413 6.964807 TTTATTGCTTGCCACATGATCTAT 57.035 33.333 0.00 0.00 0.00 1.98
3262 3414 6.321945 ACATTTATTGCTTGCCACATGATCTA 59.678 34.615 0.00 0.00 0.00 1.98
3263 3415 5.128171 ACATTTATTGCTTGCCACATGATCT 59.872 36.000 0.00 0.00 0.00 2.75
3264 3416 5.353938 ACATTTATTGCTTGCCACATGATC 58.646 37.500 0.00 0.00 0.00 2.92
3265 3417 5.347620 ACATTTATTGCTTGCCACATGAT 57.652 34.783 0.00 0.00 0.00 2.45
3266 3418 4.804868 ACATTTATTGCTTGCCACATGA 57.195 36.364 0.00 0.00 0.00 3.07
3267 3419 5.893687 TCTACATTTATTGCTTGCCACATG 58.106 37.500 0.00 0.00 0.00 3.21
3268 3420 6.528537 TTCTACATTTATTGCTTGCCACAT 57.471 33.333 0.00 0.00 0.00 3.21
3269 3421 5.973899 TTCTACATTTATTGCTTGCCACA 57.026 34.783 0.00 0.00 0.00 4.17
3270 3422 6.256321 CCATTTCTACATTTATTGCTTGCCAC 59.744 38.462 0.00 0.00 0.00 5.01
3271 3423 6.154192 TCCATTTCTACATTTATTGCTTGCCA 59.846 34.615 0.00 0.00 0.00 4.92
3272 3424 6.572519 TCCATTTCTACATTTATTGCTTGCC 58.427 36.000 0.00 0.00 0.00 4.52
3273 3425 7.483307 TCTCCATTTCTACATTTATTGCTTGC 58.517 34.615 0.00 0.00 0.00 4.01
3274 3426 9.859427 TTTCTCCATTTCTACATTTATTGCTTG 57.141 29.630 0.00 0.00 0.00 4.01
3277 3429 9.860898 ACTTTTCTCCATTTCTACATTTATTGC 57.139 29.630 0.00 0.00 0.00 3.56
3280 3432 9.533831 ACCACTTTTCTCCATTTCTACATTTAT 57.466 29.630 0.00 0.00 0.00 1.40
3281 3433 8.934023 ACCACTTTTCTCCATTTCTACATTTA 57.066 30.769 0.00 0.00 0.00 1.40
3282 3434 7.839680 ACCACTTTTCTCCATTTCTACATTT 57.160 32.000 0.00 0.00 0.00 2.32
3283 3435 8.793592 GTTACCACTTTTCTCCATTTCTACATT 58.206 33.333 0.00 0.00 0.00 2.71
3284 3436 7.942341 TGTTACCACTTTTCTCCATTTCTACAT 59.058 33.333 0.00 0.00 0.00 2.29
3285 3437 7.284074 TGTTACCACTTTTCTCCATTTCTACA 58.716 34.615 0.00 0.00 0.00 2.74
3286 3438 7.739498 TGTTACCACTTTTCTCCATTTCTAC 57.261 36.000 0.00 0.00 0.00 2.59
3288 3440 8.793592 GTTATGTTACCACTTTTCTCCATTTCT 58.206 33.333 0.00 0.00 0.00 2.52
3289 3441 8.793592 AGTTATGTTACCACTTTTCTCCATTTC 58.206 33.333 0.00 0.00 0.00 2.17
3290 3442 8.706322 AGTTATGTTACCACTTTTCTCCATTT 57.294 30.769 0.00 0.00 0.00 2.32
3291 3443 9.449719 CTAGTTATGTTACCACTTTTCTCCATT 57.550 33.333 0.00 0.00 0.00 3.16
3292 3444 8.603304 ACTAGTTATGTTACCACTTTTCTCCAT 58.397 33.333 0.00 0.00 0.00 3.41
3293 3445 7.970102 ACTAGTTATGTTACCACTTTTCTCCA 58.030 34.615 0.00 0.00 0.00 3.86
3294 3446 8.843885 AACTAGTTATGTTACCACTTTTCTCC 57.156 34.615 6.26 0.00 0.00 3.71
3319 3471 9.895138 TGTGTGATGTTACTCATACTACTAGTA 57.105 33.333 1.89 1.89 37.92 1.82
3320 3472 8.803397 TGTGTGATGTTACTCATACTACTAGT 57.197 34.615 0.00 0.00 37.92 2.57
3326 3478 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
3327 3479 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
3328 3480 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
3329 3481 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
3330 3482 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
3331 3483 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
3332 3484 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
3333 3485 6.435430 TTGCCTTGATATGTGTGATGTTAC 57.565 37.500 0.00 0.00 0.00 2.50
3334 3486 7.459795 TTTTGCCTTGATATGTGTGATGTTA 57.540 32.000 0.00 0.00 0.00 2.41
3335 3487 5.981088 TTTGCCTTGATATGTGTGATGTT 57.019 34.783 0.00 0.00 0.00 2.71
3336 3488 5.981088 TTTTGCCTTGATATGTGTGATGT 57.019 34.783 0.00 0.00 0.00 3.06
3337 3489 6.566141 TCATTTTGCCTTGATATGTGTGATG 58.434 36.000 0.00 0.00 0.00 3.07
3338 3490 6.379133 ACTCATTTTGCCTTGATATGTGTGAT 59.621 34.615 0.00 0.00 0.00 3.06
3339 3491 5.711506 ACTCATTTTGCCTTGATATGTGTGA 59.288 36.000 0.00 0.00 0.00 3.58
3340 3492 5.957798 ACTCATTTTGCCTTGATATGTGTG 58.042 37.500 0.00 0.00 0.00 3.82
3341 3493 5.948162 AGACTCATTTTGCCTTGATATGTGT 59.052 36.000 0.00 0.00 0.00 3.72
3342 3494 6.446781 AGACTCATTTTGCCTTGATATGTG 57.553 37.500 0.00 0.00 0.00 3.21
3343 3495 9.499479 CTATAGACTCATTTTGCCTTGATATGT 57.501 33.333 0.00 0.00 0.00 2.29
3344 3496 8.449397 GCTATAGACTCATTTTGCCTTGATATG 58.551 37.037 3.21 0.00 0.00 1.78
3345 3497 7.609532 GGCTATAGACTCATTTTGCCTTGATAT 59.390 37.037 3.21 0.00 36.52 1.63
3346 3498 6.936900 GGCTATAGACTCATTTTGCCTTGATA 59.063 38.462 3.21 0.00 36.52 2.15
3347 3499 5.767168 GGCTATAGACTCATTTTGCCTTGAT 59.233 40.000 3.21 0.00 36.52 2.57
3348 3500 5.104360 AGGCTATAGACTCATTTTGCCTTGA 60.104 40.000 0.83 0.00 46.04 3.02
3349 3501 5.128919 AGGCTATAGACTCATTTTGCCTTG 58.871 41.667 0.83 0.00 46.04 3.61
3350 3502 5.379706 AGGCTATAGACTCATTTTGCCTT 57.620 39.130 0.83 0.00 46.04 4.35
3352 3504 8.848474 TTATTAGGCTATAGACTCATTTTGCC 57.152 34.615 12.64 0.00 39.40 4.52
3363 3515 9.273016 GCAACACTTCATTTATTAGGCTATAGA 57.727 33.333 3.21 0.00 0.00 1.98
3364 3516 9.056005 TGCAACACTTCATTTATTAGGCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
3365 3517 8.972458 TGCAACACTTCATTTATTAGGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
3366 3518 7.880160 TGCAACACTTCATTTATTAGGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
3367 3519 7.339212 ACATGCAACACTTCATTTATTAGGCTA 59.661 33.333 0.00 0.00 0.00 3.93
3368 3520 6.153340 ACATGCAACACTTCATTTATTAGGCT 59.847 34.615 0.00 0.00 0.00 4.58
3369 3521 6.332630 ACATGCAACACTTCATTTATTAGGC 58.667 36.000 0.00 0.00 0.00 3.93
3370 3522 9.289303 GTAACATGCAACACTTCATTTATTAGG 57.711 33.333 0.00 0.00 0.00 2.69
3371 3523 9.289303 GGTAACATGCAACACTTCATTTATTAG 57.711 33.333 0.00 0.00 0.00 1.73
3372 3524 8.797438 TGGTAACATGCAACACTTCATTTATTA 58.203 29.630 0.00 0.00 46.17 0.98
3373 3525 7.665690 TGGTAACATGCAACACTTCATTTATT 58.334 30.769 0.00 0.00 46.17 1.40
3374 3526 7.225784 TGGTAACATGCAACACTTCATTTAT 57.774 32.000 0.00 0.00 46.17 1.40
3375 3527 6.641169 TGGTAACATGCAACACTTCATTTA 57.359 33.333 0.00 0.00 46.17 1.40
3376 3528 5.528043 TGGTAACATGCAACACTTCATTT 57.472 34.783 0.00 0.00 46.17 2.32
3392 3544 4.807304 CGGGAGTAACATATGTGTGGTAAC 59.193 45.833 9.63 1.91 38.92 2.50
3393 3545 4.710865 TCGGGAGTAACATATGTGTGGTAA 59.289 41.667 9.63 0.00 38.92 2.85
3394 3546 4.098349 GTCGGGAGTAACATATGTGTGGTA 59.902 45.833 9.63 0.00 38.92 3.25
3395 3547 3.101437 TCGGGAGTAACATATGTGTGGT 58.899 45.455 9.63 0.00 38.92 4.16
3396 3548 3.132289 AGTCGGGAGTAACATATGTGTGG 59.868 47.826 9.63 0.00 38.92 4.17
3397 3549 4.386867 AGTCGGGAGTAACATATGTGTG 57.613 45.455 9.63 0.00 38.92 3.82
3398 3550 7.229308 TCTATAGTCGGGAGTAACATATGTGT 58.771 38.462 9.63 2.63 41.28 3.72
3399 3551 7.148222 CCTCTATAGTCGGGAGTAACATATGTG 60.148 44.444 9.63 0.00 0.00 3.21
3400 3552 6.885376 CCTCTATAGTCGGGAGTAACATATGT 59.115 42.308 1.41 1.41 0.00 2.29
3401 3553 6.885376 ACCTCTATAGTCGGGAGTAACATATG 59.115 42.308 0.00 0.00 0.00 1.78
3402 3554 7.030234 ACCTCTATAGTCGGGAGTAACATAT 57.970 40.000 13.07 0.00 0.00 1.78
3403 3555 6.445451 ACCTCTATAGTCGGGAGTAACATA 57.555 41.667 13.07 0.00 0.00 2.29
3404 3556 5.321934 ACCTCTATAGTCGGGAGTAACAT 57.678 43.478 13.07 0.00 0.00 2.71
3405 3557 4.785346 ACCTCTATAGTCGGGAGTAACA 57.215 45.455 13.07 0.00 0.00 2.41
3406 3558 5.863965 ACTACCTCTATAGTCGGGAGTAAC 58.136 45.833 20.33 0.00 40.19 2.50
3407 3559 7.071196 TGTTACTACCTCTATAGTCGGGAGTAA 59.929 40.741 27.08 27.08 46.71 2.24
3408 3560 6.554982 TGTTACTACCTCTATAGTCGGGAGTA 59.445 42.308 21.80 21.80 40.19 2.59
3409 3561 5.367937 TGTTACTACCTCTATAGTCGGGAGT 59.632 44.000 23.24 23.24 44.13 3.85
3410 3562 5.862845 TGTTACTACCTCTATAGTCGGGAG 58.137 45.833 16.67 16.67 36.74 4.30
3411 3563 5.894298 TGTTACTACCTCTATAGTCGGGA 57.106 43.478 13.07 5.91 36.74 5.14
3412 3564 7.548780 GTCTATGTTACTACCTCTATAGTCGGG 59.451 44.444 13.07 10.20 36.74 5.14
3413 3565 8.313292 AGTCTATGTTACTACCTCTATAGTCGG 58.687 40.741 0.00 4.63 36.74 4.79
3423 3575 8.848182 GCATGTTACTAGTCTATGTTACTACCT 58.152 37.037 0.00 0.00 0.00 3.08
3424 3576 8.627403 TGCATGTTACTAGTCTATGTTACTACC 58.373 37.037 0.00 0.00 0.00 3.18
3427 3579 8.696374 ACATGCATGTTACTAGTCTATGTTACT 58.304 33.333 26.61 0.00 37.90 2.24
3428 3580 8.873215 ACATGCATGTTACTAGTCTATGTTAC 57.127 34.615 26.61 0.00 37.90 2.50
3444 3596 8.696374 AGTAACATAGACTAGTAACATGCATGT 58.304 33.333 26.61 26.61 44.20 3.21
3447 3599 8.627403 GGTAGTAACATAGACTAGTAACATGCA 58.373 37.037 0.00 0.00 30.08 3.96
3448 3600 8.081025 GGGTAGTAACATAGACTAGTAACATGC 58.919 40.741 0.00 0.00 30.08 4.06
3449 3601 9.128404 TGGGTAGTAACATAGACTAGTAACATG 57.872 37.037 0.00 2.36 30.08 3.21
3450 3602 9.878737 ATGGGTAGTAACATAGACTAGTAACAT 57.121 33.333 0.00 0.00 30.08 2.71
3451 3603 9.705103 AATGGGTAGTAACATAGACTAGTAACA 57.295 33.333 0.00 0.00 30.08 2.41
3452 3604 9.962783 CAATGGGTAGTAACATAGACTAGTAAC 57.037 37.037 0.00 0.00 30.08 2.50
3453 3605 9.705103 ACAATGGGTAGTAACATAGACTAGTAA 57.295 33.333 0.00 0.00 30.08 2.24
3454 3606 9.128404 CACAATGGGTAGTAACATAGACTAGTA 57.872 37.037 0.00 0.00 30.08 1.82
3455 3607 7.069578 CCACAATGGGTAGTAACATAGACTAGT 59.930 40.741 0.00 0.00 32.67 2.57
3456 3608 7.434492 CCACAATGGGTAGTAACATAGACTAG 58.566 42.308 0.00 0.00 32.67 2.57
3457 3609 6.183360 GCCACAATGGGTAGTAACATAGACTA 60.183 42.308 0.00 0.00 38.19 2.59
3458 3610 5.396436 GCCACAATGGGTAGTAACATAGACT 60.396 44.000 0.00 0.00 38.19 3.24
3459 3611 4.814771 GCCACAATGGGTAGTAACATAGAC 59.185 45.833 0.00 0.00 38.19 2.59
3460 3612 5.031066 GCCACAATGGGTAGTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
3472 3624 3.627395 TGTTAGACTAGCCACAATGGG 57.373 47.619 0.00 0.00 38.19 4.00
3473 3625 3.375299 GCTTGTTAGACTAGCCACAATGG 59.625 47.826 3.63 0.00 40.28 3.16
3474 3626 4.256920 AGCTTGTTAGACTAGCCACAATG 58.743 43.478 10.14 0.00 45.77 2.82
3475 3627 4.020218 TGAGCTTGTTAGACTAGCCACAAT 60.020 41.667 10.14 0.00 45.77 2.71
3476 3628 3.323691 TGAGCTTGTTAGACTAGCCACAA 59.676 43.478 10.14 0.00 45.77 3.33
3477 3629 2.897326 TGAGCTTGTTAGACTAGCCACA 59.103 45.455 10.14 8.63 45.77 4.17
3478 3630 3.594603 TGAGCTTGTTAGACTAGCCAC 57.405 47.619 10.14 6.62 45.77 5.01
3479 3631 3.578716 AGTTGAGCTTGTTAGACTAGCCA 59.421 43.478 10.14 6.34 45.77 4.75
3480 3632 4.177783 GAGTTGAGCTTGTTAGACTAGCC 58.822 47.826 10.14 4.27 45.77 3.93
3481 3633 3.854809 CGAGTTGAGCTTGTTAGACTAGC 59.145 47.826 6.43 6.43 45.15 3.42
3482 3634 5.049398 ACGAGTTGAGCTTGTTAGACTAG 57.951 43.478 0.00 0.00 38.67 2.57
3483 3635 4.760715 AGACGAGTTGAGCTTGTTAGACTA 59.239 41.667 0.00 0.00 41.75 2.59
3484 3636 3.570550 AGACGAGTTGAGCTTGTTAGACT 59.429 43.478 0.00 0.00 41.75 3.24
3485 3637 3.903360 AGACGAGTTGAGCTTGTTAGAC 58.097 45.455 0.00 0.00 41.75 2.59
3486 3638 4.379603 GCTAGACGAGTTGAGCTTGTTAGA 60.380 45.833 0.00 0.00 41.75 2.10
3487 3639 3.854809 GCTAGACGAGTTGAGCTTGTTAG 59.145 47.826 0.00 0.00 41.75 2.34
3564 3716 7.657336 TCTTTTCTATTTGATTGGTGGTGTTC 58.343 34.615 0.00 0.00 0.00 3.18
3571 3723 8.424133 ACAAAGCTTCTTTTCTATTTGATTGGT 58.576 29.630 0.00 0.00 33.14 3.67
3579 4375 7.588497 AGTGGAACAAAGCTTCTTTTCTATT 57.412 32.000 0.00 0.00 44.16 1.73
3591 4387 0.661483 GCGCTGAAGTGGAACAAAGC 60.661 55.000 0.00 0.00 44.16 3.51
3685 4481 2.363788 AAATGCACATTCAGCAGCAG 57.636 45.000 0.00 0.00 46.36 4.24
3716 6114 6.989169 GCTCACTTCATCACATATAAAGGAGT 59.011 38.462 0.00 0.00 0.00 3.85
3717 6115 6.426328 GGCTCACTTCATCACATATAAAGGAG 59.574 42.308 0.00 0.00 0.00 3.69
3722 6120 4.058124 GCGGCTCACTTCATCACATATAA 58.942 43.478 0.00 0.00 0.00 0.98
3724 6122 2.103771 AGCGGCTCACTTCATCACATAT 59.896 45.455 0.00 0.00 0.00 1.78
3727 6125 0.671472 CAGCGGCTCACTTCATCACA 60.671 55.000 0.00 0.00 0.00 3.58
3728 6126 0.390340 TCAGCGGCTCACTTCATCAC 60.390 55.000 0.00 0.00 0.00 3.06
3731 6129 1.376543 CATTCAGCGGCTCACTTCAT 58.623 50.000 0.00 0.00 0.00 2.57
3734 6132 0.392193 CTCCATTCAGCGGCTCACTT 60.392 55.000 0.00 0.00 0.00 3.16
3737 6135 1.078918 CACTCCATTCAGCGGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
3738 6136 0.674895 AACACTCCATTCAGCGGCTC 60.675 55.000 0.00 0.00 0.00 4.70
3740 6138 0.955428 TCAACACTCCATTCAGCGGC 60.955 55.000 0.00 0.00 0.00 6.53
3742 6140 3.243035 TGTTTTCAACACTCCATTCAGCG 60.243 43.478 0.00 0.00 36.25 5.18
3743 6141 4.305989 TGTTTTCAACACTCCATTCAGC 57.694 40.909 0.00 0.00 36.25 4.26
3755 6153 6.108097 GGAGATAATCCGAGTGTTTTCAAC 57.892 41.667 0.00 0.00 38.67 3.18
3768 6166 4.034510 CAGCAAACAACTCGGAGATAATCC 59.965 45.833 12.86 0.00 45.64 3.01
3769 6167 4.870426 TCAGCAAACAACTCGGAGATAATC 59.130 41.667 12.86 0.00 33.89 1.75
3770 6168 4.832248 TCAGCAAACAACTCGGAGATAAT 58.168 39.130 12.86 0.00 33.89 1.28
3773 6171 2.693069 CTCAGCAAACAACTCGGAGAT 58.307 47.619 12.86 0.00 33.89 2.75
3774 6172 1.873903 GCTCAGCAAACAACTCGGAGA 60.874 52.381 12.86 0.00 0.00 3.71
3775 6173 0.514691 GCTCAGCAAACAACTCGGAG 59.485 55.000 2.83 2.83 0.00 4.63
3776 6174 0.179059 TGCTCAGCAAACAACTCGGA 60.179 50.000 0.00 0.00 34.76 4.55
3777 6175 0.662619 TTGCTCAGCAAACAACTCGG 59.337 50.000 10.46 0.00 45.96 4.63
3786 6184 0.670162 GGCTTTCACTTGCTCAGCAA 59.330 50.000 12.63 12.63 46.80 3.91
3787 6185 1.509644 CGGCTTTCACTTGCTCAGCA 61.510 55.000 0.00 0.00 36.47 4.41
3789 6187 0.603707 TCCGGCTTTCACTTGCTCAG 60.604 55.000 0.00 0.00 0.00 3.35
3790 6188 0.179032 TTCCGGCTTTCACTTGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
3791 6189 0.951558 TTTCCGGCTTTCACTTGCTC 59.048 50.000 0.00 0.00 0.00 4.26
3793 6191 2.159379 CCTATTTCCGGCTTTCACTTGC 60.159 50.000 0.00 0.00 0.00 4.01
3794 6192 2.159379 GCCTATTTCCGGCTTTCACTTG 60.159 50.000 0.00 0.00 44.17 3.16
3795 6193 2.092323 GCCTATTTCCGGCTTTCACTT 58.908 47.619 0.00 0.00 44.17 3.16
3797 6195 0.738975 GGCCTATTTCCGGCTTTCAC 59.261 55.000 0.00 0.00 46.73 3.18
3798 6196 0.329931 TGGCCTATTTCCGGCTTTCA 59.670 50.000 3.32 0.00 46.73 2.69
3799 6197 1.025041 CTGGCCTATTTCCGGCTTTC 58.975 55.000 3.32 0.00 46.73 2.62
3800 6198 0.395724 CCTGGCCTATTTCCGGCTTT 60.396 55.000 3.32 0.00 46.73 3.51
3802 6200 2.919043 CCTGGCCTATTTCCGGCT 59.081 61.111 3.32 0.00 46.73 5.52
3803 6201 2.907407 GCCTGGCCTATTTCCGGC 60.907 66.667 7.66 0.64 46.83 6.13
3804 6202 0.468029 ATTGCCTGGCCTATTTCCGG 60.468 55.000 17.53 0.00 0.00 5.14
3805 6203 1.402787 AATTGCCTGGCCTATTTCCG 58.597 50.000 17.53 0.00 0.00 4.30
3807 6205 5.048434 GTCAGATAATTGCCTGGCCTATTTC 60.048 44.000 17.53 14.06 0.00 2.17
3808 6206 4.829492 GTCAGATAATTGCCTGGCCTATTT 59.171 41.667 17.53 6.95 0.00 1.40
3809 6207 4.141181 TGTCAGATAATTGCCTGGCCTATT 60.141 41.667 17.53 17.16 34.33 1.73
3810 6208 3.395607 TGTCAGATAATTGCCTGGCCTAT 59.604 43.478 17.53 10.26 34.33 2.57
3811 6209 2.777114 TGTCAGATAATTGCCTGGCCTA 59.223 45.455 17.53 4.46 34.33 3.93
3812 6210 1.565759 TGTCAGATAATTGCCTGGCCT 59.434 47.619 17.53 1.11 34.33 5.19
3813 6211 1.678101 GTGTCAGATAATTGCCTGGCC 59.322 52.381 17.53 0.00 34.33 5.36
3814 6212 1.678101 GGTGTCAGATAATTGCCTGGC 59.322 52.381 12.87 12.87 35.70 4.85
3815 6213 3.003394 TGGTGTCAGATAATTGCCTGG 57.997 47.619 8.45 0.00 0.00 4.45
3817 6215 4.142093 GCATTTGGTGTCAGATAATTGCCT 60.142 41.667 0.00 0.00 0.00 4.75
3818 6216 4.114794 GCATTTGGTGTCAGATAATTGCC 58.885 43.478 0.00 0.00 0.00 4.52
3819 6217 3.792956 CGCATTTGGTGTCAGATAATTGC 59.207 43.478 0.00 0.00 0.00 3.56
3821 6219 5.643379 AACGCATTTGGTGTCAGATAATT 57.357 34.783 0.00 0.00 39.93 1.40
3823 6221 4.517075 TCAAACGCATTTGGTGTCAGATAA 59.483 37.500 5.29 0.00 44.61 1.75
3825 6223 2.884012 TCAAACGCATTTGGTGTCAGAT 59.116 40.909 5.29 0.00 44.61 2.90
3826 6224 2.293170 TCAAACGCATTTGGTGTCAGA 58.707 42.857 5.29 0.00 44.61 3.27
3832 6230 2.622942 ACACTCATCAAACGCATTTGGT 59.377 40.909 5.29 0.00 44.61 3.67
3833 6231 2.981805 CACACTCATCAAACGCATTTGG 59.018 45.455 5.29 0.00 44.61 3.28
3835 6233 2.884012 TCCACACTCATCAAACGCATTT 59.116 40.909 0.00 0.00 0.00 2.32
3837 6235 2.183478 TCCACACTCATCAAACGCAT 57.817 45.000 0.00 0.00 0.00 4.73
3838 6236 1.960417 TTCCACACTCATCAAACGCA 58.040 45.000 0.00 0.00 0.00 5.24
3840 6238 2.290367 TGCTTTCCACACTCATCAAACG 59.710 45.455 0.00 0.00 0.00 3.60
3841 6239 3.988379 TGCTTTCCACACTCATCAAAC 57.012 42.857 0.00 0.00 0.00 2.93
3842 6240 5.534207 AATTGCTTTCCACACTCATCAAA 57.466 34.783 0.00 0.00 0.00 2.69
3844 6242 6.489700 TCTTAAATTGCTTTCCACACTCATCA 59.510 34.615 0.00 0.00 0.00 3.07
3847 6245 6.489700 TCATCTTAAATTGCTTTCCACACTCA 59.510 34.615 0.00 0.00 0.00 3.41
3848 6246 6.913170 TCATCTTAAATTGCTTTCCACACTC 58.087 36.000 0.00 0.00 0.00 3.51
3849 6247 6.716628 TCTCATCTTAAATTGCTTTCCACACT 59.283 34.615 0.00 0.00 0.00 3.55
3850 6248 6.913170 TCTCATCTTAAATTGCTTTCCACAC 58.087 36.000 0.00 0.00 0.00 3.82
3851 6249 7.231317 AGTTCTCATCTTAAATTGCTTTCCACA 59.769 33.333 0.00 0.00 0.00 4.17
3852 6250 7.597386 AGTTCTCATCTTAAATTGCTTTCCAC 58.403 34.615 0.00 0.00 0.00 4.02
3853 6251 7.765695 AGTTCTCATCTTAAATTGCTTTCCA 57.234 32.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.