Multiple sequence alignment - TraesCS2D01G099800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G099800 chr2D 100.000 3604 0 0 1 3604 52026633 52023030 0.000000e+00 6656.0
1 TraesCS2D01G099800 chr2D 92.467 2177 93 23 1458 3604 42730147 42732282 0.000000e+00 3046.0
2 TraesCS2D01G099800 chr2D 94.036 503 26 1 951 1453 42729563 42730061 0.000000e+00 760.0
3 TraesCS2D01G099800 chr2D 79.976 839 66 44 128 957 42727936 42728681 3.190000e-145 525.0
4 TraesCS2D01G099800 chr2D 100.000 126 0 0 1 126 338668414 338668289 2.160000e-57 233.0
5 TraesCS2D01G099800 chr2D 100.000 126 0 0 1 126 632057986 632057861 2.160000e-57 233.0
6 TraesCS2D01G099800 chr2D 100.000 29 0 0 3576 3604 590059656 590059628 2.000000e-03 54.7
7 TraesCS2D01G099800 chr2B 92.979 1410 60 13 1458 2848 80538026 80536637 0.000000e+00 2019.0
8 TraesCS2D01G099800 chr2B 89.579 1353 57 30 125 1453 80539405 80538113 0.000000e+00 1640.0
9 TraesCS2D01G099800 chr2B 83.219 727 81 21 2882 3604 80534298 80533609 2.360000e-176 628.0
10 TraesCS2D01G099800 chr2A 92.626 1329 70 19 1458 2775 53290651 53289340 0.000000e+00 1886.0
11 TraesCS2D01G099800 chr2A 91.724 725 41 7 2881 3604 53288641 53287935 0.000000e+00 989.0
12 TraesCS2D01G099800 chr2A 89.263 801 35 18 653 1453 53291476 53290727 0.000000e+00 955.0
13 TraesCS2D01G099800 chr2A 86.989 269 31 4 2579 2846 53274558 53274293 2.100000e-77 300.0
14 TraesCS2D01G099800 chr2A 93.478 138 9 0 2387 2524 53278321 53278184 4.720000e-49 206.0
15 TraesCS2D01G099800 chr2A 81.421 183 25 6 459 636 53334158 53333980 1.350000e-29 141.0
16 TraesCS2D01G099800 chr6A 97.710 131 2 1 1 130 32749187 32749057 1.300000e-54 224.0
17 TraesCS2D01G099800 chr3D 98.425 127 2 0 1 127 313497815 313497689 1.300000e-54 224.0
18 TraesCS2D01G099800 chr3A 97.710 131 2 1 1 130 507306856 507306986 1.300000e-54 224.0
19 TraesCS2D01G099800 chr1B 97.710 131 2 1 1 130 683747961 683748091 1.300000e-54 224.0
20 TraesCS2D01G099800 chr7A 98.413 126 2 0 1 126 442265756 442265881 4.680000e-54 222.0
21 TraesCS2D01G099800 chr7A 95.588 136 5 1 1 135 492651362 492651227 2.180000e-52 217.0
22 TraesCS2D01G099800 chr3B 96.850 127 4 0 1 127 378689166 378689292 2.820000e-51 213.0
23 TraesCS2D01G099800 chr7B 87.273 55 6 1 3269 3323 573255402 573255349 1.080000e-05 62.1
24 TraesCS2D01G099800 chr1D 93.023 43 1 2 3562 3604 302079059 302079019 1.080000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G099800 chr2D 52023030 52026633 3603 True 6656.000000 6656 100.000000 1 3604 1 chr2D.!!$R1 3603
1 TraesCS2D01G099800 chr2D 42727936 42732282 4346 False 1443.666667 3046 88.826333 128 3604 3 chr2D.!!$F1 3476
2 TraesCS2D01G099800 chr2B 80533609 80539405 5796 True 1429.000000 2019 88.592333 125 3604 3 chr2B.!!$R1 3479
3 TraesCS2D01G099800 chr2A 53287935 53291476 3541 True 1276.666667 1886 91.204333 653 3604 3 chr2A.!!$R3 2951
4 TraesCS2D01G099800 chr2A 53274293 53278321 4028 True 253.000000 300 90.233500 2387 2846 2 chr2A.!!$R2 459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.0 0.0 0.00 2.17 F
1028 1957 0.593518 CTAGCAGATCTCGTGCCGTG 60.594 60.000 0.0 0.0 42.24 4.94 F
2154 3178 0.727398 GCGCACAAGGTAAGTGATCC 59.273 55.000 0.3 0.0 39.30 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 3022 1.153469 CGGCCAGAGCTTCTTCTCC 60.153 63.158 2.24 0.0 39.73 3.71 R
2245 3274 0.039617 GCTGCACGCACCAACATTAA 60.040 50.000 0.00 0.0 38.92 1.40 R
3385 10671 0.110486 ACTCCATTCCACTTGCCGTT 59.890 50.000 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.324521 ACTCCCTCCGTCCCAAAA 57.675 55.556 0.00 0.00 0.00 2.44
18 19 2.787118 ACTCCCTCCGTCCCAAAAT 58.213 52.632 0.00 0.00 0.00 1.82
19 20 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
20 21 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
21 22 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
22 23 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
23 24 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
24 25 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
25 26 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
26 27 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
27 28 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
28 29 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
29 30 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
30 31 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
31 32 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
32 33 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
33 34 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
34 35 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
35 36 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
36 37 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
37 38 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
45 46 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
46 47 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
47 48 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
48 49 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
49 50 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
50 51 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
61 62 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
62 63 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
63 64 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
64 65 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
65 66 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
66 67 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
67 68 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
68 69 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
69 70 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
70 71 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
73 74 9.478768 TGTATCAAGTCACGTTTTAGTATTTGA 57.521 29.630 0.00 0.00 0.00 2.69
77 78 9.478768 TCAAGTCACGTTTTAGTATTTGATACA 57.521 29.630 0.00 0.00 38.21 2.29
80 81 9.095065 AGTCACGTTTTAGTATTTGATACATCC 57.905 33.333 0.00 0.00 38.21 3.51
81 82 8.054236 GTCACGTTTTAGTATTTGATACATCCG 58.946 37.037 0.00 0.00 38.21 4.18
82 83 7.760794 TCACGTTTTAGTATTTGATACATCCGT 59.239 33.333 0.00 0.00 38.21 4.69
83 84 9.022915 CACGTTTTAGTATTTGATACATCCGTA 57.977 33.333 0.00 0.00 38.21 4.02
84 85 9.754382 ACGTTTTAGTATTTGATACATCCGTAT 57.246 29.630 1.42 0.00 41.16 3.06
101 102 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
102 103 9.529325 CATCCGTATCTAGACAAATTTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
104 105 9.582431 TCCGTATCTAGACAAATTTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
105 106 9.582431 CCGTATCTAGACAAATTTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
113 114 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
114 115 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
115 116 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
116 117 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
117 118 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
118 119 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
119 120 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
120 121 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
121 122 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
122 123 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
123 124 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
135 136 2.109657 ACGGAGGGAGTATTAGGTAGGG 59.890 54.545 0.00 0.00 0.00 3.53
137 138 2.225573 GGAGGGAGTATTAGGTAGGGGG 60.226 59.091 0.00 0.00 0.00 5.40
156 157 6.198639 AGGGGGTTAATTGCATGTTAATACA 58.801 36.000 7.73 0.00 38.95 2.29
225 241 7.499321 TGGATGAATGTAACACTAAAACGTT 57.501 32.000 0.00 0.00 0.00 3.99
269 286 9.528018 TTAGACAATCTAAAGCAAACTTTTTGG 57.472 29.630 0.00 0.00 43.74 3.28
270 287 7.555965 AGACAATCTAAAGCAAACTTTTTGGT 58.444 30.769 0.00 0.00 43.74 3.67
271 288 7.706607 AGACAATCTAAAGCAAACTTTTTGGTC 59.293 33.333 3.97 0.00 43.74 4.02
272 289 7.555965 ACAATCTAAAGCAAACTTTTTGGTCT 58.444 30.769 3.97 0.00 43.74 3.85
273 290 8.691797 ACAATCTAAAGCAAACTTTTTGGTCTA 58.308 29.630 3.97 0.00 43.74 2.59
274 291 9.185192 CAATCTAAAGCAAACTTTTTGGTCTAG 57.815 33.333 3.97 4.70 43.74 2.43
275 292 8.691661 ATCTAAAGCAAACTTTTTGGTCTAGA 57.308 30.769 13.45 13.45 43.74 2.43
276 293 7.927048 TCTAAAGCAAACTTTTTGGTCTAGAC 58.073 34.615 14.87 14.87 43.74 2.59
277 294 6.524101 AAAGCAAACTTTTTGGTCTAGACA 57.476 33.333 23.91 7.95 43.74 3.41
278 295 6.524101 AAGCAAACTTTTTGGTCTAGACAA 57.476 33.333 23.91 10.92 29.41 3.18
279 296 6.524101 AGCAAACTTTTTGGTCTAGACAAA 57.476 33.333 23.91 16.82 36.15 2.83
280 297 7.112452 AGCAAACTTTTTGGTCTAGACAAAT 57.888 32.000 23.91 1.59 37.62 2.32
281 298 7.203218 AGCAAACTTTTTGGTCTAGACAAATC 58.797 34.615 23.91 7.51 37.62 2.17
282 299 7.068716 AGCAAACTTTTTGGTCTAGACAAATCT 59.931 33.333 23.91 4.31 37.62 2.40
283 300 8.349983 GCAAACTTTTTGGTCTAGACAAATCTA 58.650 33.333 23.91 1.97 37.62 1.98
299 316 5.241728 ACAAATCTAGAGCAAAGTTTGGGAC 59.758 40.000 17.11 0.90 32.46 4.46
305 322 1.524008 GCAAAGTTTGGGACGAGGGG 61.524 60.000 17.11 0.00 0.00 4.79
348 372 5.923204 TCAATTGCACATTAAAACTGGGTT 58.077 33.333 0.00 0.00 0.00 4.11
426 450 9.481340 TGATTTTGCTCTCTACACATATGTATC 57.519 33.333 8.32 3.98 40.57 2.24
427 451 9.703892 GATTTTGCTCTCTACACATATGTATCT 57.296 33.333 8.32 0.00 40.57 1.98
430 454 9.574516 TTTGCTCTCTACACATATGTATCTAGA 57.425 33.333 8.32 11.37 40.57 2.43
431 455 9.574516 TTGCTCTCTACACATATGTATCTAGAA 57.425 33.333 8.32 4.41 40.57 2.10
432 456 9.004717 TGCTCTCTACACATATGTATCTAGAAC 57.995 37.037 8.32 6.08 40.57 3.01
433 457 8.455682 GCTCTCTACACATATGTATCTAGAACC 58.544 40.741 8.32 1.38 40.57 3.62
434 458 9.733556 CTCTCTACACATATGTATCTAGAACCT 57.266 37.037 8.32 0.00 40.57 3.50
437 461 9.862149 TCTACACATATGTATCTAGAACCTTCA 57.138 33.333 8.32 0.00 40.57 3.02
440 464 7.875041 ACACATATGTATCTAGAACCTTCATGC 59.125 37.037 8.32 0.00 37.26 4.06
441 465 7.874528 CACATATGTATCTAGAACCTTCATGCA 59.125 37.037 8.32 0.00 0.00 3.96
442 466 7.875041 ACATATGTATCTAGAACCTTCATGCAC 59.125 37.037 6.56 0.00 0.00 4.57
443 467 4.682787 TGTATCTAGAACCTTCATGCACG 58.317 43.478 0.00 0.00 0.00 5.34
444 468 4.401202 TGTATCTAGAACCTTCATGCACGA 59.599 41.667 0.00 0.00 0.00 4.35
445 469 3.510388 TCTAGAACCTTCATGCACGAG 57.490 47.619 0.00 0.00 0.00 4.18
446 470 1.929836 CTAGAACCTTCATGCACGAGC 59.070 52.381 0.00 0.00 42.57 5.03
522 546 2.060284 CGTGTTGTTTTCATGGCCATG 58.940 47.619 35.76 35.76 40.09 3.66
619 655 1.375523 CGTAGGTGGCACCAGAACC 60.376 63.158 36.28 17.94 41.95 3.62
626 662 1.966451 GGCACCAGAACCTTCGTGG 60.966 63.158 0.00 0.00 42.93 4.94
942 978 1.373748 GTTTCCAGCCGCACGACTA 60.374 57.895 0.00 0.00 0.00 2.59
1011 1936 4.569023 CTCACGATGGCCGCGCTA 62.569 66.667 16.62 5.35 43.32 4.26
1026 1955 1.659954 GCTAGCAGATCTCGTGCCG 60.660 63.158 10.63 0.00 42.24 5.69
1027 1956 1.730487 CTAGCAGATCTCGTGCCGT 59.270 57.895 0.00 0.00 42.24 5.68
1028 1957 0.593518 CTAGCAGATCTCGTGCCGTG 60.594 60.000 0.00 0.00 42.24 4.94
1029 1958 2.613739 TAGCAGATCTCGTGCCGTGC 62.614 60.000 0.00 0.00 42.24 5.34
1151 2080 1.002274 ACGGCTTCCTGGAGGAGAT 59.998 57.895 10.38 0.00 46.36 2.75
1453 2382 0.872388 GCCCAAGAAAGGTACGTGTG 59.128 55.000 0.00 0.00 0.00 3.82
1455 2384 1.542547 CCCAAGAAAGGTACGTGTGCT 60.543 52.381 0.00 0.00 0.00 4.40
1456 2385 1.798813 CCAAGAAAGGTACGTGTGCTC 59.201 52.381 0.00 0.00 0.00 4.26
1465 2476 1.591504 TACGTGTGCTCGATCTGCCA 61.592 55.000 0.00 1.46 34.70 4.92
1791 2802 4.457496 ACTCGATGGGCTGCACCG 62.457 66.667 0.00 0.00 40.62 4.94
1914 2925 8.260114 TGCATTATTCTGAGATGTACTTTCTGA 58.740 33.333 3.97 1.78 0.00 3.27
2120 3139 2.268076 CCGGTTTTGGGAGTGGCTG 61.268 63.158 0.00 0.00 0.00 4.85
2141 3160 1.737735 CAAGATCCTCACGCGCACA 60.738 57.895 5.73 0.00 0.00 4.57
2149 3168 0.944311 CTCACGCGCACAAGGTAAGT 60.944 55.000 5.73 0.00 0.00 2.24
2154 3178 0.727398 GCGCACAAGGTAAGTGATCC 59.273 55.000 0.30 0.00 39.30 3.36
2161 3185 4.935205 CACAAGGTAAGTGATCCGATCAAA 59.065 41.667 12.75 0.00 41.69 2.69
2162 3186 5.586243 CACAAGGTAAGTGATCCGATCAAAT 59.414 40.000 12.75 7.40 41.69 2.32
2163 3187 5.817816 ACAAGGTAAGTGATCCGATCAAATC 59.182 40.000 12.75 1.29 41.69 2.17
2164 3188 5.614324 AGGTAAGTGATCCGATCAAATCA 57.386 39.130 12.75 3.49 41.69 2.57
2165 3189 5.989477 AGGTAAGTGATCCGATCAAATCAA 58.011 37.500 12.75 0.00 41.69 2.57
2166 3190 6.595682 AGGTAAGTGATCCGATCAAATCAAT 58.404 36.000 12.75 5.31 41.69 2.57
2167 3191 6.708054 AGGTAAGTGATCCGATCAAATCAATC 59.292 38.462 12.75 0.00 41.69 2.67
2168 3192 6.483307 GGTAAGTGATCCGATCAAATCAATCA 59.517 38.462 12.75 0.00 41.69 2.57
2169 3193 5.998454 AGTGATCCGATCAAATCAATCAC 57.002 39.130 12.75 16.84 44.36 3.06
2205 3234 2.146342 CAGACATGAACAGGGACACAC 58.854 52.381 0.00 0.00 0.00 3.82
2414 3443 3.075005 CCGGTGAGGGTCGTCCAT 61.075 66.667 0.04 0.00 38.24 3.41
2627 7227 2.442212 TGCCGAGTAATGAAACGACA 57.558 45.000 0.00 0.00 0.00 4.35
2632 7232 3.426191 CCGAGTAATGAAACGACACGAAA 59.574 43.478 0.00 0.00 0.00 3.46
2700 7330 6.559810 TGAAACTGTAGGAAACATGTTGTTG 58.440 36.000 12.82 1.66 40.14 3.33
2715 7346 4.765273 TGTTGTTGTTCTCTTACAGCAGA 58.235 39.130 0.00 0.00 39.79 4.26
2722 7353 4.287067 TGTTCTCTTACAGCAGAGGGATTT 59.713 41.667 0.00 0.00 40.82 2.17
2733 7366 3.067320 GCAGAGGGATTTTTGCTGGTATC 59.933 47.826 0.00 0.00 33.88 2.24
2756 7389 5.705441 TCTTTTTAGAATGAAGGCATCACGT 59.295 36.000 0.00 0.00 41.93 4.49
2760 7393 4.406648 AGAATGAAGGCATCACGTCATA 57.593 40.909 0.00 0.00 41.93 2.15
2856 7817 1.373435 CAGCCCCTAAACGTCCACA 59.627 57.895 0.00 0.00 0.00 4.17
2859 7820 0.252197 GCCCCTAAACGTCCACAGAT 59.748 55.000 0.00 0.00 0.00 2.90
2862 7823 1.338674 CCCTAAACGTCCACAGATGCA 60.339 52.381 0.00 0.00 31.66 3.96
2864 7825 2.609459 CCTAAACGTCCACAGATGCATC 59.391 50.000 19.37 19.37 31.66 3.91
2867 7828 2.528743 CGTCCACAGATGCATCCGC 61.529 63.158 23.06 0.00 39.24 5.54
2876 10142 2.046988 TGCATCCGCAGACAGTGG 60.047 61.111 0.00 0.00 45.36 4.00
2918 10198 1.868519 GCGTCCACAATCGGGTATCTC 60.869 57.143 0.00 0.00 0.00 2.75
2930 10210 2.700897 CGGGTATCTCAAATCTGACCCT 59.299 50.000 6.35 0.00 33.71 4.34
2931 10211 3.493350 CGGGTATCTCAAATCTGACCCTG 60.493 52.174 6.35 0.00 33.71 4.45
3055 10337 4.808895 CACGGTTCATCGGATCAAAAGATA 59.191 41.667 0.00 0.00 0.00 1.98
3085 10367 3.554324 TCGTCGCAGCATAGATAAAAACC 59.446 43.478 0.00 0.00 0.00 3.27
3142 10424 2.968574 ACACTGAGACATCACCACTTCT 59.031 45.455 0.00 0.00 0.00 2.85
3147 10429 1.070758 AGACATCACCACTTCTGCGTT 59.929 47.619 0.00 0.00 0.00 4.84
3218 10500 0.969149 TGAGGTGTGTCATCGAAGCT 59.031 50.000 0.00 0.00 0.00 3.74
3360 10642 1.755179 CCGGAGCTTGACATTGGATT 58.245 50.000 0.00 0.00 0.00 3.01
3385 10671 1.682684 GGGACGAGGAGAGGAGCAA 60.683 63.158 0.00 0.00 0.00 3.91
3421 10707 0.466543 AGTGTGGTTTGACTGCGGTA 59.533 50.000 0.00 0.00 0.00 4.02
3491 10777 3.080765 ATGGTCCGATGGGCACGA 61.081 61.111 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1 2 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2 3 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3 4 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4 5 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5 6 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6 7 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
7 8 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
8 9 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
9 10 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
10 11 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
11 12 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
19 20 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
20 21 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
21 22 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
22 23 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
23 24 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
24 25 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
40 41 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
41 42 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
42 43 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
43 44 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
44 45 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
47 48 9.478768 TCAAATACTAAAACGTGACTTGATACA 57.521 29.630 0.00 0.00 0.00 2.29
51 52 9.478768 TGTATCAAATACTAAAACGTGACTTGA 57.521 29.630 0.00 0.00 36.70 3.02
54 55 9.095065 GGATGTATCAAATACTAAAACGTGACT 57.905 33.333 0.00 0.00 36.70 3.41
55 56 8.054236 CGGATGTATCAAATACTAAAACGTGAC 58.946 37.037 0.00 0.00 36.70 3.67
56 57 7.760794 ACGGATGTATCAAATACTAAAACGTGA 59.239 33.333 0.00 0.00 36.70 4.35
57 58 7.902032 ACGGATGTATCAAATACTAAAACGTG 58.098 34.615 0.00 0.00 36.70 4.49
58 59 9.754382 ATACGGATGTATCAAATACTAAAACGT 57.246 29.630 0.00 0.00 36.56 3.99
75 76 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
76 77 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
78 79 9.582431 CTTGTCTTAAATTTGTCTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
79 80 9.582431 TCTTGTCTTAAATTTGTCTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
87 88 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
88 89 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
89 90 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
90 91 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
91 92 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
92 93 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
93 94 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
94 95 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
95 96 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
96 97 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
97 98 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
98 99 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
99 100 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
100 101 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
101 102 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
102 103 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
103 104 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
104 105 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
105 106 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
106 107 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
107 108 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
108 109 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
109 110 2.674420 CTAATACTCCCTCCGTCCCAA 58.326 52.381 0.00 0.00 0.00 4.12
110 111 1.133262 CCTAATACTCCCTCCGTCCCA 60.133 57.143 0.00 0.00 0.00 4.37
111 112 1.133231 ACCTAATACTCCCTCCGTCCC 60.133 57.143 0.00 0.00 0.00 4.46
112 113 2.378378 ACCTAATACTCCCTCCGTCC 57.622 55.000 0.00 0.00 0.00 4.79
113 114 3.419943 CCTACCTAATACTCCCTCCGTC 58.580 54.545 0.00 0.00 0.00 4.79
114 115 2.109657 CCCTACCTAATACTCCCTCCGT 59.890 54.545 0.00 0.00 0.00 4.69
115 116 2.557005 CCCCTACCTAATACTCCCTCCG 60.557 59.091 0.00 0.00 0.00 4.63
116 117 2.225573 CCCCCTACCTAATACTCCCTCC 60.226 59.091 0.00 0.00 0.00 4.30
117 118 2.453991 ACCCCCTACCTAATACTCCCTC 59.546 54.545 0.00 0.00 0.00 4.30
118 119 2.533502 ACCCCCTACCTAATACTCCCT 58.466 52.381 0.00 0.00 0.00 4.20
119 120 3.357482 AACCCCCTACCTAATACTCCC 57.643 52.381 0.00 0.00 0.00 4.30
120 121 6.746329 GCAATTAACCCCCTACCTAATACTCC 60.746 46.154 0.00 0.00 0.00 3.85
121 122 6.183361 TGCAATTAACCCCCTACCTAATACTC 60.183 42.308 0.00 0.00 0.00 2.59
122 123 5.673113 TGCAATTAACCCCCTACCTAATACT 59.327 40.000 0.00 0.00 0.00 2.12
123 124 5.944135 TGCAATTAACCCCCTACCTAATAC 58.056 41.667 0.00 0.00 0.00 1.89
156 157 8.635328 ACAAACTTTTTGAAACGGAGGTAATAT 58.365 29.630 5.67 0.00 0.00 1.28
243 259 9.528018 CCAAAAAGTTTGCTTTAGATTGTCTAA 57.472 29.630 0.00 0.00 43.52 2.10
251 267 7.554835 TGTCTAGACCAAAAAGTTTGCTTTAGA 59.445 33.333 20.11 0.00 43.52 2.10
252 268 7.703328 TGTCTAGACCAAAAAGTTTGCTTTAG 58.297 34.615 20.11 0.00 43.52 1.85
261 278 7.604545 GCTCTAGATTTGTCTAGACCAAAAAGT 59.395 37.037 20.11 4.53 42.49 2.66
265 282 6.605471 TGCTCTAGATTTGTCTAGACCAAA 57.395 37.500 20.11 18.36 42.49 3.28
266 283 6.605471 TTGCTCTAGATTTGTCTAGACCAA 57.395 37.500 20.11 15.67 42.49 3.67
267 284 6.211584 ACTTTGCTCTAGATTTGTCTAGACCA 59.788 38.462 20.11 6.48 42.49 4.02
268 285 6.635755 ACTTTGCTCTAGATTTGTCTAGACC 58.364 40.000 20.11 4.63 42.49 3.85
269 286 8.439286 CAAACTTTGCTCTAGATTTGTCTAGAC 58.561 37.037 16.32 16.32 42.49 2.59
270 287 7.604164 CCAAACTTTGCTCTAGATTTGTCTAGA 59.396 37.037 12.97 12.97 44.41 2.43
271 288 7.148340 CCCAAACTTTGCTCTAGATTTGTCTAG 60.148 40.741 11.40 6.20 40.66 2.43
272 289 6.655003 CCCAAACTTTGCTCTAGATTTGTCTA 59.345 38.462 11.40 0.00 0.00 2.59
273 290 5.474876 CCCAAACTTTGCTCTAGATTTGTCT 59.525 40.000 11.40 0.00 0.00 3.41
274 291 5.473504 TCCCAAACTTTGCTCTAGATTTGTC 59.526 40.000 11.40 0.00 0.00 3.18
275 292 5.241728 GTCCCAAACTTTGCTCTAGATTTGT 59.758 40.000 11.40 0.00 0.00 2.83
276 293 5.617751 CGTCCCAAACTTTGCTCTAGATTTG 60.618 44.000 7.10 7.10 0.00 2.32
277 294 4.455877 CGTCCCAAACTTTGCTCTAGATTT 59.544 41.667 0.00 0.00 0.00 2.17
278 295 4.003648 CGTCCCAAACTTTGCTCTAGATT 58.996 43.478 0.00 0.00 0.00 2.40
279 296 3.260884 TCGTCCCAAACTTTGCTCTAGAT 59.739 43.478 0.00 0.00 0.00 1.98
280 297 2.631062 TCGTCCCAAACTTTGCTCTAGA 59.369 45.455 0.00 0.00 0.00 2.43
281 298 2.996621 CTCGTCCCAAACTTTGCTCTAG 59.003 50.000 0.00 0.00 0.00 2.43
282 299 2.289444 CCTCGTCCCAAACTTTGCTCTA 60.289 50.000 0.00 0.00 0.00 2.43
283 300 1.543429 CCTCGTCCCAAACTTTGCTCT 60.543 52.381 0.00 0.00 0.00 4.09
284 301 0.875059 CCTCGTCCCAAACTTTGCTC 59.125 55.000 0.00 0.00 0.00 4.26
285 302 0.537371 CCCTCGTCCCAAACTTTGCT 60.537 55.000 0.00 0.00 0.00 3.91
286 303 1.524008 CCCCTCGTCCCAAACTTTGC 61.524 60.000 0.00 0.00 0.00 3.68
287 304 0.109723 TCCCCTCGTCCCAAACTTTG 59.890 55.000 0.00 0.00 0.00 2.77
288 305 0.400594 CTCCCCTCGTCCCAAACTTT 59.599 55.000 0.00 0.00 0.00 2.66
289 306 0.767060 ACTCCCCTCGTCCCAAACTT 60.767 55.000 0.00 0.00 0.00 2.66
290 307 0.115745 TACTCCCCTCGTCCCAAACT 59.884 55.000 0.00 0.00 0.00 2.66
291 308 1.201424 ATACTCCCCTCGTCCCAAAC 58.799 55.000 0.00 0.00 0.00 2.93
299 316 2.317040 TCTTGGCTAATACTCCCCTCG 58.683 52.381 0.00 0.00 0.00 4.63
305 322 8.725148 CAATTGATGGTATCTTGGCTAATACTC 58.275 37.037 0.00 0.00 0.00 2.59
422 446 4.933330 TCGTGCATGAAGGTTCTAGATAC 58.067 43.478 6.04 0.00 0.00 2.24
423 447 4.499865 GCTCGTGCATGAAGGTTCTAGATA 60.500 45.833 10.41 0.00 39.41 1.98
424 448 3.739519 GCTCGTGCATGAAGGTTCTAGAT 60.740 47.826 10.41 0.00 39.41 1.98
425 449 2.417379 GCTCGTGCATGAAGGTTCTAGA 60.417 50.000 10.41 0.00 39.41 2.43
426 450 1.929836 GCTCGTGCATGAAGGTTCTAG 59.070 52.381 10.41 0.00 39.41 2.43
427 451 1.275010 TGCTCGTGCATGAAGGTTCTA 59.725 47.619 10.41 0.00 45.31 2.10
428 452 0.035317 TGCTCGTGCATGAAGGTTCT 59.965 50.000 10.41 0.00 45.31 3.01
429 453 2.543578 TGCTCGTGCATGAAGGTTC 58.456 52.632 10.41 0.00 45.31 3.62
430 454 4.798433 TGCTCGTGCATGAAGGTT 57.202 50.000 10.41 0.00 45.31 3.50
438 462 4.942481 AGCGTTCGTGCTCGTGCA 62.942 61.111 8.30 8.30 42.95 4.57
439 463 3.702555 AAGCGTTCGTGCTCGTGC 61.703 61.111 8.17 10.69 46.60 5.34
440 464 2.168621 CAAGCGTTCGTGCTCGTG 59.831 61.111 8.17 1.19 46.60 4.35
441 465 3.702555 GCAAGCGTTCGTGCTCGT 61.703 61.111 8.17 0.00 46.60 4.18
442 466 4.430423 GGCAAGCGTTCGTGCTCG 62.430 66.667 0.81 0.81 46.60 5.03
443 467 2.187599 AATGGCAAGCGTTCGTGCTC 62.188 55.000 0.00 0.00 46.60 4.26
445 469 2.082366 CAATGGCAAGCGTTCGTGC 61.082 57.895 0.00 0.35 45.09 5.34
446 470 0.040514 TTCAATGGCAAGCGTTCGTG 60.041 50.000 0.00 0.00 0.00 4.35
447 471 0.238289 CTTCAATGGCAAGCGTTCGT 59.762 50.000 0.00 0.00 0.00 3.85
842 878 2.257067 CAAATCCCCGCGCGTTTT 59.743 55.556 29.95 18.49 0.00 2.43
942 978 0.548510 GAGGGGCTTAAGTGGATGCT 59.451 55.000 4.02 0.00 0.00 3.79
1453 2382 3.344215 CGGCATGGCAGATCGAGC 61.344 66.667 20.37 0.00 0.00 5.03
1455 2384 2.202919 CACGGCATGGCAGATCGA 60.203 61.111 20.37 0.00 0.00 3.59
1456 2385 3.945434 GCACGGCATGGCAGATCG 61.945 66.667 20.37 4.78 0.00 3.69
1757 2768 1.668151 GTGGCTGACGAGGTGGAAC 60.668 63.158 0.00 0.00 0.00 3.62
1884 2895 8.830201 AAGTACATCTCAGAATAATGCAGATC 57.170 34.615 0.00 0.00 0.00 2.75
1885 2896 9.270640 GAAAGTACATCTCAGAATAATGCAGAT 57.729 33.333 0.00 0.00 0.00 2.90
1886 2897 8.481314 AGAAAGTACATCTCAGAATAATGCAGA 58.519 33.333 0.00 0.00 0.00 4.26
1887 2898 8.549548 CAGAAAGTACATCTCAGAATAATGCAG 58.450 37.037 0.00 0.00 0.00 4.41
2003 3022 1.153469 CGGCCAGAGCTTCTTCTCC 60.153 63.158 2.24 0.00 39.73 3.71
2120 3139 0.528466 TGCGCGTGAGGATCTTGATC 60.528 55.000 8.43 2.21 34.92 2.92
2141 3160 5.989477 TGATTTGATCGGATCACTTACCTT 58.011 37.500 19.79 1.03 39.39 3.50
2149 3168 4.692228 TCGTGATTGATTTGATCGGATCA 58.308 39.130 16.44 16.44 37.55 2.92
2154 3178 7.575365 TGGATTAATCGTGATTGATTTGATCG 58.425 34.615 9.32 0.00 39.27 3.69
2161 3185 5.862845 AGCTCTGGATTAATCGTGATTGAT 58.137 37.500 9.32 2.62 30.86 2.57
2162 3186 5.163416 TGAGCTCTGGATTAATCGTGATTGA 60.163 40.000 16.19 0.00 32.50 2.57
2163 3187 5.052481 TGAGCTCTGGATTAATCGTGATTG 58.948 41.667 16.19 1.59 32.50 2.67
2164 3188 5.069648 TCTGAGCTCTGGATTAATCGTGATT 59.930 40.000 19.23 0.22 34.93 2.57
2165 3189 4.586421 TCTGAGCTCTGGATTAATCGTGAT 59.414 41.667 19.23 0.00 0.00 3.06
2166 3190 3.954258 TCTGAGCTCTGGATTAATCGTGA 59.046 43.478 19.23 8.67 0.00 4.35
2167 3191 4.047822 GTCTGAGCTCTGGATTAATCGTG 58.952 47.826 19.23 4.91 0.00 4.35
2168 3192 3.701542 TGTCTGAGCTCTGGATTAATCGT 59.298 43.478 19.23 0.00 0.00 3.73
2169 3193 4.313277 TGTCTGAGCTCTGGATTAATCG 57.687 45.455 19.23 0.00 0.00 3.34
2205 3234 0.183014 ATGGCAGAGATCCAGGCAAG 59.817 55.000 9.40 0.00 41.29 4.01
2241 3270 2.224549 TGCACGCACCAACATTAAGTAC 59.775 45.455 0.00 0.00 0.00 2.73
2243 3272 1.266718 CTGCACGCACCAACATTAAGT 59.733 47.619 0.00 0.00 0.00 2.24
2245 3274 0.039617 GCTGCACGCACCAACATTAA 60.040 50.000 0.00 0.00 38.92 1.40
2247 3276 2.336088 GCTGCACGCACCAACATT 59.664 55.556 0.00 0.00 38.92 2.71
2611 7211 4.618338 TTTCGTGTCGTTTCATTACTCG 57.382 40.909 0.00 0.00 0.00 4.18
2613 7213 5.924254 TGAGATTTCGTGTCGTTTCATTACT 59.076 36.000 0.00 0.00 0.00 2.24
2615 7215 6.772770 TTGAGATTTCGTGTCGTTTCATTA 57.227 33.333 0.00 0.00 0.00 1.90
2627 7227 1.393539 CGGCATCGTTTGAGATTTCGT 59.606 47.619 0.00 0.00 0.00 3.85
2632 7232 2.365617 ACTATCCGGCATCGTTTGAGAT 59.634 45.455 0.00 0.00 33.95 2.75
2700 7330 4.479786 AATCCCTCTGCTGTAAGAGAAC 57.520 45.455 10.05 0.00 45.59 3.01
2715 7346 6.686484 AAAAAGATACCAGCAAAAATCCCT 57.314 33.333 0.00 0.00 0.00 4.20
2722 7353 8.522830 CCTTCATTCTAAAAAGATACCAGCAAA 58.477 33.333 0.00 0.00 0.00 3.68
2733 7366 5.942872 ACGTGATGCCTTCATTCTAAAAAG 58.057 37.500 0.00 0.00 36.54 2.27
2823 7783 2.424234 GGGGCTGGTTTTGCTATATCCA 60.424 50.000 0.00 0.00 0.00 3.41
2862 7823 4.457496 CGGCCACTGTCTGCGGAT 62.457 66.667 2.24 0.00 0.00 4.18
2867 7828 2.047844 CTGACCGGCCACTGTCTG 60.048 66.667 15.64 12.17 32.71 3.51
2876 10142 3.537874 ATACGAGGGCTGACCGGC 61.538 66.667 0.00 0.00 46.96 6.13
2918 10198 2.607771 CGGTTTTGCAGGGTCAGATTTG 60.608 50.000 0.00 0.00 0.00 2.32
2930 10210 1.472082 CATGGATAGCACGGTTTTGCA 59.528 47.619 0.00 0.00 45.62 4.08
2931 10211 1.798813 GCATGGATAGCACGGTTTTGC 60.799 52.381 0.00 0.00 43.34 3.68
3055 10337 2.515926 ATGCTGCGACGATGAACTAT 57.484 45.000 0.00 0.00 0.00 2.12
3114 10396 1.889170 TGATGTCTCAGTGTCGCTCTT 59.111 47.619 0.00 0.00 0.00 2.85
3142 10424 2.594303 CTGCAAGGGACCAACGCA 60.594 61.111 0.00 0.00 0.00 5.24
3147 10429 4.329545 GGCGACTGCAAGGGACCA 62.330 66.667 0.00 0.00 45.35 4.02
3218 10500 1.884075 CGACTTCGATGGTCCCCACA 61.884 60.000 11.67 0.00 43.02 4.17
3232 10514 1.230635 GCATCACACTGCCACGACTT 61.231 55.000 0.00 0.00 36.10 3.01
3360 10642 0.614979 CTCTCCTCGTCCCCCTTTCA 60.615 60.000 0.00 0.00 0.00 2.69
3385 10671 0.110486 ACTCCATTCCACTTGCCGTT 59.890 50.000 0.00 0.00 0.00 4.44
3421 10707 2.046729 TCCCCACCTAGACAAACCCTAT 59.953 50.000 0.00 0.00 0.00 2.57
3467 10753 2.072487 CCATCGGACCATCCCACCT 61.072 63.158 0.00 0.00 31.13 4.00
3491 10777 2.446036 GGGTATGGGAGGCTCGGT 60.446 66.667 8.69 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.