AutoCloner

Multiple sequence alignment - TraesCS2D01G098500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G098500	chr2D	100.000	2594	0	0	1	2594	50668742	50671335	0.000000e+00	4791.0
1	TraesCS2D01G098500	chr2D	94.702	151	8	0	2366	2516	50673209	50673059	4.320000e-58	235.0
2	TraesCS2D01G098500	chr7D	90.625	1536	87	15	805	2291	106478461	106476934	0.000000e+00	1986.0
3	TraesCS2D01G098500	chr7D	94.509	1202	49	9	614	1807	106363382	106364574	0.000000e+00	1838.0
4	TraesCS2D01G098500	chr7D	90.921	782	41	18	1	763	106479236	106478466	0.000000e+00	1024.0
5	TraesCS2D01G098500	chr7D	91.029	379	23	7	103	472	106360524	106360900	3.850000e-138	501.0
6	TraesCS2D01G098500	chr7D	85.263	380	23	11	1801	2147	106364988	106365367	6.820000e-96	361.0
7	TraesCS2D01G098500	chr7D	92.453	159	8	2	2134	2291	106366116	106366271	9.340000e-55	224.0
8	TraesCS2D01G098500	chr7D	89.634	164	13	2	2129	2291	106367878	106368038	3.380000e-49	206.0
9	TraesCS2D01G098500	chr7D	89.474	95	5	3	1	91	106360365	106360458	5.870000e-22	115.0
10	TraesCS2D01G098500	chr7D	97.368	38	1	0	1646	1683	106364343	106364380	5.990000e-07	65.8
11	TraesCS2D01G098500	chr7D	97.143	35	1	0	476	510	106360893	106360927	2.790000e-05	60.2
12	TraesCS2D01G098500	chr2B	96.214	1215	26	2	821	2035	78837071	78838265	0.000000e+00	1971.0
13	TraesCS2D01G098500	chr2B	96.774	744	20	4	1	741	78836328	78837070	0.000000e+00	1238.0
14	TraesCS2D01G098500	chr2B	92.995	414	16	3	2089	2501	78838274	78838675	2.220000e-165	592.0
15	TraesCS2D01G098500	chr2B	90.728	151	14	0	2366	2516	78857975	78857825	4.380000e-48	202.0
16	TraesCS2D01G098500	chr2B	89.583	96	10	0	2499	2594	78855986	78856081	3.510000e-24	122.0
17	TraesCS2D01G098500	chr2B	97.727	44	1	0	1825	1868	90032967	90033010	2.770000e-10	76.8
18	TraesCS2D01G098500	chr2B	97.368	38	1	0	1575	1612	78837896	78837933	5.990000e-07	65.8
19	TraesCS2D01G098500	chr7B	89.648	454	36	7	103	547	64945130	64945581	3.750000e-158	568.0
20	TraesCS2D01G098500	chr7B	90.204	245	24	0	1929	2173	64945674	64945918	1.160000e-83	320.0
21	TraesCS2D01G098500	chr7B	97.674	86	2	0	738	823	501704292	501704207	5.780000e-32	148.0
22	TraesCS2D01G098500	chr3B	94.898	98	3	2	738	833	749148616	749148519	4.470000e-33	152.0
23	TraesCS2D01G098500	chr3B	82.517	143	18	7	2346	2484	328733624	328733763	4.530000e-23	119.0
24	TraesCS2D01G098500	chr6D	85.816	141	19	1	2345	2484	157376485	157376345	5.780000e-32	148.0
25	TraesCS2D01G098500	chr6D	80.272	147	25	3	2345	2489	337249500	337249356	9.820000e-20	108.0
26	TraesCS2D01G098500	chr4A	96.629	89	3	0	735	823	440964819	440964907	5.780000e-32	148.0
27	TraesCS2D01G098500	chr4A	83.721	129	18	3	2345	2471	255320189	255320062	4.530000e-23	119.0
28	TraesCS2D01G098500	chr4D	93.814	97	6	0	727	823	371601309	371601213	2.080000e-31	147.0
29	TraesCS2D01G098500	chr4D	84.058	138	21	1	2345	2481	165760846	165760983	5.820000e-27	132.0
30	TraesCS2D01G098500	chr5D	92.233	103	6	2	738	838	62715243	62715141	7.480000e-31	145.0
31	TraesCS2D01G098500	chr5D	92.000	100	8	0	739	838	45483694	45483793	9.680000e-30	141.0
32	TraesCS2D01G098500	chrUn	91.346	104	8	1	721	823	100223720	100223823	9.680000e-30	141.0
33	TraesCS2D01G098500	chr2A	92.929	99	3	4	725	823	81757217	81757311	9.680000e-30	141.0
34	TraesCS2D01G098500	chr2A	91.489	47	4	0	1823	1869	677949702	677949656	5.990000e-07	65.8
35	TraesCS2D01G098500	chr3D	83.571	140	18	5	2346	2482	199090918	199090781	2.710000e-25	126.0
36	TraesCS2D01G098500	chr3D	90.909	44	4	0	1823	1866	47087306	47087349	2.790000e-05	60.2
37	TraesCS2D01G098500	chr1D	97.561	41	1	0	1825	1865	453120889	453120929	1.290000e-08	71.3
38	TraesCS2D01G098500	chr5A	91.304	46	4	0	1823	1868	550564500	550564545	2.160000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G098500	chr2D	50668742	50671335	2593	False	4791.000	4791	100.000000	1	2594	1	chr2D.!!$F1	2593
1	TraesCS2D01G098500	chr7D	106476934	106479236	2302	True	1505.000	1986	90.773000	1	2291	2	chr7D.!!$R1	2290
2	TraesCS2D01G098500	chr7D	106360365	106368038	7673	False	421.375	1838	92.109125	1	2291	8	chr7D.!!$F1	2290
3	TraesCS2D01G098500	chr2B	78836328	78838675	2347	False	966.700	1971	95.837750	1	2501	4	chr2B.!!$F3	2500
4	TraesCS2D01G098500	chr7B	64945130	64945918	788	False	444.000	568	89.926000	103	2173	2	chr7B.!!$F1	2070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
547	638	1.303317	ATCAGGTCAACCGCCCAAC	60.303	57.895	0.0	0.0	42.08	3.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2330	7797	0.034059	GACAGTGTCTGTGGGACTGG	59.966	60.0	16.26	0.0	45.44	4.0	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
120	179	2.488545	GACCTTAGCACAACTCTCGAGA	59.511	50.000	15.70	15.70	0.00	4.04
251	328	4.960469	CCCTCATAAGACACCCTGTAGTAA	59.040	45.833	0.00	0.00	0.00	2.24
269	346	2.134789	AACCTGAAGGGCATCATGAC	57.865	50.000	0.00	0.00	40.27	3.06
361	441	4.263572	TCACCCTGCCCAACACCG	62.264	66.667	0.00	0.00	0.00	4.94
466	557	4.908601	TTCTAGAGTTCCTTGCATTCCA	57.091	40.909	0.00	0.00	0.00	3.53
547	638	1.303317	ATCAGGTCAACCGCCCAAC	60.303	57.895	0.00	0.00	42.08	3.77
548	639	3.353836	CAGGTCAACCGCCCAACG	61.354	66.667	0.00	0.00	42.08	4.10
552	643	3.283684	TCAACCGCCCAACGCTTG	61.284	61.111	0.00	0.00	41.76	4.01
575	666	6.916909	TGGGATGCATTATAGGGAGTTTAAA	58.083	36.000	0.00	0.00	0.00	1.52
745	3205	6.561519	AAACATAACAGTATGCTACTCCCT	57.438	37.500	0.00	0.00	42.53	4.20
763	3223	6.635021	ACTCCCTCTGTCCCATAATATAAGT	58.365	40.000	0.00	0.00	0.00	2.24
764	3224	7.776745	ACTCCCTCTGTCCCATAATATAAGTA	58.223	38.462	0.00	0.00	0.00	2.24
765	3225	7.674772	ACTCCCTCTGTCCCATAATATAAGTAC	59.325	40.741	0.00	0.00	0.00	2.73
1089	3552	3.499918	CGAGTTTGCCTCTTGAGTTCATT	59.500	43.478	0.00	0.00	38.11	2.57
1094	3557	4.090761	TGCCTCTTGAGTTCATTGACTT	57.909	40.909	0.00	0.00	0.00	3.01
1508	3971	1.226802	CTGCCCGTGATCGTCTGAG	60.227	63.158	0.00	0.00	35.01	3.35
1807	4291	7.385778	GTTGGAAACTAAAGTGTATGGCATA	57.614	36.000	2.32	2.32	45.32	3.14
1943	4877	3.745803	GCTGTTGCTGCTCCAGGC	61.746	66.667	16.82	8.57	42.22	4.85
1990	4927	3.046087	CACAGGCTCCACGCTGTG	61.046	66.667	0.00	0.00	39.53	3.66
2038	4975	3.390967	TCCACCAATCTTCAAGACAGTCA	59.609	43.478	2.66	0.00	0.00	3.41
2056	4993	4.052159	GTCATCTGACGATCAGGATGTT	57.948	45.455	12.89	0.00	44.39	2.71
2060	4997	2.159184	TCTGACGATCAGGATGTTGAGC	60.159	50.000	12.89	0.00	44.39	4.26
2103	5040	3.057019	GTTTCACGAGCATAGACACACA	58.943	45.455	0.00	0.00	0.00	3.72
2221	7687	1.569493	CACCGTCAACCAAGCGAAG	59.431	57.895	0.00	0.00	0.00	3.79
2320	7787	1.475213	GGACTCTAGAAATTGGGCCCG	60.475	57.143	19.37	0.00	0.00	6.13
2321	7788	1.209747	GACTCTAGAAATTGGGCCCGT	59.790	52.381	19.37	5.26	0.00	5.28
2322	7789	1.065418	ACTCTAGAAATTGGGCCCGTG	60.065	52.381	19.37	3.33	0.00	4.94
2323	7790	0.254747	TCTAGAAATTGGGCCCGTGG	59.745	55.000	19.37	1.07	0.00	4.94
2324	7791	0.751643	CTAGAAATTGGGCCCGTGGG	60.752	60.000	19.37	0.00	38.57	4.61
2325	7792	1.502527	TAGAAATTGGGCCCGTGGGT	61.503	55.000	19.37	0.00	37.65	4.51
2326	7793	1.000646	GAAATTGGGCCCGTGGGTA	60.001	57.895	19.37	0.00	37.65	3.69
2327	7794	1.304630	AAATTGGGCCCGTGGGTAC	60.305	57.895	19.37	0.40	37.65	3.34
2342	7809	1.229400	GTACCCCCAGTCCCACAGA	60.229	63.158	0.00	0.00	0.00	3.41
2355	7822	3.626924	ACAGACACTGTCGGGCCC	61.627	66.667	13.57	13.57	41.21	5.80
2371	7838	1.759692	CCCGTGGGACTAGGGGTAC	60.760	68.421	0.00	0.00	40.86	3.34
2501	7968	3.249189	AAGTCGCCAAGGCCCTCA	61.249	61.111	5.34	0.00	37.98	3.86
2502	7969	2.606587	AAGTCGCCAAGGCCCTCAT	61.607	57.895	5.34	0.00	37.98	2.90
2503	7970	2.825836	GTCGCCAAGGCCCTCATG	60.826	66.667	5.34	0.00	37.98	3.07
2504	7971	3.008517	TCGCCAAGGCCCTCATGA	61.009	61.111	5.34	0.00	37.98	3.07
2505	7972	2.515523	CGCCAAGGCCCTCATGAG	60.516	66.667	16.24	16.24	37.98	2.90
2515	7982	2.805897	CCTCATGAGGCTCTCTCGT	58.194	57.895	28.45	0.00	45.32	4.18
2516	7983	0.667993	CCTCATGAGGCTCTCTCGTC	59.332	60.000	28.45	0.00	45.32	4.20
2517	7984	1.387539	CTCATGAGGCTCTCTCGTCA	58.612	55.000	15.38	0.00	45.32	4.35
2518	7985	1.955778	CTCATGAGGCTCTCTCGTCAT	59.044	52.381	15.38	0.00	45.32	3.06
2519	7986	1.952990	TCATGAGGCTCTCTCGTCATC	59.047	52.381	16.72	0.00	45.32	2.92
2520	7987	1.000385	CATGAGGCTCTCTCGTCATCC	60.000	57.143	16.72	0.00	45.32	3.51
2521	7988	1.098129	TGAGGCTCTCTCGTCATCCG	61.098	60.000	16.72	0.00	45.32	4.18
2522	7989	1.791103	GAGGCTCTCTCGTCATCCGG	61.791	65.000	7.40	0.00	37.11	5.14
2523	7990	2.725008	GCTCTCTCGTCATCCGGG	59.275	66.667	0.00	0.00	38.86	5.73
2524	7991	2.725008	CTCTCTCGTCATCCGGGC	59.275	66.667	0.00	0.00	36.81	6.13
2525	7992	2.044352	TCTCTCGTCATCCGGGCA	60.044	61.111	0.00	0.00	36.81	5.36
2526	7993	2.105128	CTCTCGTCATCCGGGCAC	59.895	66.667	0.00	0.00	36.81	5.01
2527	7994	3.758088	CTCTCGTCATCCGGGCACG	62.758	68.421	0.00	0.00	36.81	5.34
2528	7995	3.822192	CTCGTCATCCGGGCACGA	61.822	66.667	11.66	18.38	44.60	4.35
2529	7996	3.350909	CTCGTCATCCGGGCACGAA	62.351	63.158	11.66	0.00	41.74	3.85
2530	7997	2.885644	CGTCATCCGGGCACGAAG	60.886	66.667	11.66	0.00	44.60	3.79
2531	7998	3.195698	GTCATCCGGGCACGAAGC	61.196	66.667	11.66	0.00	44.60	3.86
2544	8011	4.189188	GAAGCCGCCGCGACTCTA	62.189	66.667	15.93	0.00	41.18	2.43
2545	8012	3.486252	GAAGCCGCCGCGACTCTAT	62.486	63.158	15.93	0.00	41.18	1.98
2546	8013	2.126417	GAAGCCGCCGCGACTCTATA	62.126	60.000	15.93	0.00	41.18	1.31
2547	8014	2.126812	GCCGCCGCGACTCTATAG	60.127	66.667	15.93	0.00	0.00	1.31
2548	8015	2.561885	CCGCCGCGACTCTATAGG	59.438	66.667	15.93	0.00	0.00	2.57
2549	8016	1.964891	CCGCCGCGACTCTATAGGA	60.965	63.158	15.93	0.00	0.00	2.94
2550	8017	1.498166	CGCCGCGACTCTATAGGAG	59.502	63.158	8.23	0.00	46.87	3.69
2551	8018	1.210672	GCCGCGACTCTATAGGAGC	59.789	63.158	8.23	0.00	45.48	4.70
2552	8019	1.498166	CCGCGACTCTATAGGAGCG	59.502	63.158	8.23	18.15	45.48	5.03
2553	8020	1.498166	CGCGACTCTATAGGAGCGG	59.502	63.158	0.00	5.52	45.48	5.52
2554	8021	1.210672	GCGACTCTATAGGAGCGGC	59.789	63.158	0.00	0.00	45.48	6.53
2555	8022	1.238625	GCGACTCTATAGGAGCGGCT	61.239	60.000	0.00	0.00	45.48	5.52
2556	8023	0.519519	CGACTCTATAGGAGCGGCTG	59.480	60.000	7.50	0.00	45.48	4.85
2557	8024	1.878525	CGACTCTATAGGAGCGGCTGA	60.879	57.143	7.50	0.00	45.48	4.26
2558	8025	1.810151	GACTCTATAGGAGCGGCTGAG	59.190	57.143	7.50	9.27	45.48	3.35
2559	8026	1.173043	CTCTATAGGAGCGGCTGAGG	58.827	60.000	7.50	0.00	35.08	3.86
2560	8027	0.251386	TCTATAGGAGCGGCTGAGGG	60.251	60.000	7.50	0.00	0.00	4.30
2561	8028	1.882989	CTATAGGAGCGGCTGAGGGC	61.883	65.000	7.50	0.00	40.90	5.19
2578	8045	3.382832	CCTGGACCGCGTCTTCCT	61.383	66.667	16.81	0.00	32.55	3.36
2579	8046	2.657237	CTGGACCGCGTCTTCCTT	59.343	61.111	16.81	0.00	32.55	3.36
2580	8047	1.738099	CTGGACCGCGTCTTCCTTG	60.738	63.158	16.81	8.33	32.55	3.61
2581	8048	3.119096	GGACCGCGTCTTCCTTGC	61.119	66.667	4.92	0.00	32.47	4.01
2582	8049	2.048127	GACCGCGTCTTCCTTGCT	60.048	61.111	4.92	0.00	0.00	3.91
2583	8050	2.048127	ACCGCGTCTTCCTTGCTC	60.048	61.111	4.92	0.00	0.00	4.26
2584	8051	2.815647	CCGCGTCTTCCTTGCTCC	60.816	66.667	4.92	0.00	0.00	4.70
2585	8052	2.815647	CGCGTCTTCCTTGCTCCC	60.816	66.667	0.00	0.00	0.00	4.30
2586	8053	2.815647	GCGTCTTCCTTGCTCCCG	60.816	66.667	0.00	0.00	0.00	5.14
2587	8054	2.970639	CGTCTTCCTTGCTCCCGA	59.029	61.111	0.00	0.00	0.00	5.14
2588	8055	1.517832	CGTCTTCCTTGCTCCCGAT	59.482	57.895	0.00	0.00	0.00	4.18
2589	8056	0.528684	CGTCTTCCTTGCTCCCGATC	60.529	60.000	0.00	0.00	0.00	3.69
2590	8057	0.537188	GTCTTCCTTGCTCCCGATCA	59.463	55.000	0.00	0.00	0.00	2.92
2591	8058	0.537188	TCTTCCTTGCTCCCGATCAC	59.463	55.000	0.00	0.00	0.00	3.06
2592	8059	0.807667	CTTCCTTGCTCCCGATCACG	60.808	60.000	0.00	0.00	39.43	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	3.530265	ATGCAACTTTATGGCATGGTG	57.470	42.857	10.98	3.40	45.80	4.17
36	37	4.279145	AGTTGCTTCGATCCTAAGACCTA	58.721	43.478	6.64	0.00	0.00	3.08
251	328	0.107508	CGTCATGATGCCCTTCAGGT	60.108	55.000	1.07	0.00	38.26	4.00
269	346	4.700268	TCAATGTTGATGATGGTTTCCG	57.300	40.909	0.00	0.00	31.01	4.30
361	441	5.359194	TGATCTGTGGAAGGTTAGATTCC	57.641	43.478	0.00	0.00	45.45	3.01
466	557	1.912731	TGTGGTATGTGGGCTGTATGT	59.087	47.619	0.00	0.00	0.00	2.29
547	638	2.086869	CCCTATAATGCATCCCAAGCG	58.913	52.381	0.00	0.00	33.85	4.68
548	639	3.245052	ACTCCCTATAATGCATCCCAAGC	60.245	47.826	0.00	0.00	0.00	4.01
552	643	7.833285	TTTTAAACTCCCTATAATGCATCCC	57.167	36.000	0.00	0.00	0.00	3.85
575	666	6.012745	AGCACTTTTAGGGATTTGACTGATT	58.987	36.000	0.00	0.00	0.00	2.57
688	3147	2.875296	AGTTAAATGCTTCTGGTGGCA	58.125	42.857	0.00	0.00	42.80	4.92
1051	3514	4.758251	CGCACGGGAGATGCCACA	62.758	66.667	0.00	0.00	40.09	4.17
1160	3623	3.535629	CTGGAGGTGAGCCGTTGCA	62.536	63.158	0.00	0.00	41.13	4.08
1227	3690	2.673523	GTGATGGCTGCCTCCACT	59.326	61.111	25.63	7.20	39.25	4.00
1569	4032	5.885449	AGAGGAGGTCAAGGATAATCTTG	57.115	43.478	0.00	0.00	43.91	3.02
1926	4832	3.745803	GCCTGGAGCAGCAACAGC	61.746	66.667	10.11	3.81	42.97	4.40
1943	4877	3.374058	CGTAATGCTAGGGTTTTCCACAG	59.626	47.826	0.00	0.00	42.91	3.66
1990	4927	3.539604	AGCCATACAGCTGTTCATCTTC	58.460	45.455	27.06	8.19	42.95	2.87
2003	4940	4.660303	AGATTGGTGGATTAGAGCCATACA	59.340	41.667	0.00	0.00	37.81	2.29
2006	4943	4.166725	TGAAGATTGGTGGATTAGAGCCAT	59.833	41.667	0.00	0.00	37.81	4.40
2056	4993	2.689553	TAAATGTCTCATGGCGCTCA	57.310	45.000	7.64	3.81	0.00	4.26
2060	4997	1.948834	TGGCATAAATGTCTCATGGCG	59.051	47.619	0.00	0.00	45.43	5.69
2175	7641	4.025360	TCGTAGACTCTAGACCTCTGACT	58.975	47.826	5.70	0.00	0.00	3.41
2221	7687	1.202188	GGCTCCGCTTAAATGCAAGAC	60.202	52.381	0.00	0.00	0.00	3.01
2324	7791	1.229400	TCTGTGGGACTGGGGGTAC	60.229	63.158	0.00	0.00	0.00	3.34
2325	7792	1.229400	GTCTGTGGGACTGGGGGTA	60.229	63.158	0.00	0.00	41.46	3.69
2326	7793	2.529389	GTCTGTGGGACTGGGGGT	60.529	66.667	0.00	0.00	41.46	4.95
2327	7794	2.529136	TGTCTGTGGGACTGGGGG	60.529	66.667	0.00	0.00	44.74	5.40
2328	7795	1.843376	AGTGTCTGTGGGACTGGGG	60.843	63.158	0.00	0.00	44.74	4.96
2329	7796	1.372683	CAGTGTCTGTGGGACTGGG	59.627	63.158	0.00	0.00	44.74	4.45
2330	7797	0.034059	GACAGTGTCTGTGGGACTGG	59.966	60.000	16.26	0.00	45.44	4.00
2339	7806	4.742201	CGGGCCCGACAGTGTCTG	62.742	72.222	41.82	14.23	42.83	3.51
2355	7822	3.945647	GGTACCCCTAGTCCCACG	58.054	66.667	0.00	0.00	0.00	4.94
2501	7968	1.327303	GGATGACGAGAGAGCCTCAT	58.673	55.000	0.00	0.00	42.06	2.90
2502	7969	2.800516	GGATGACGAGAGAGCCTCA	58.199	57.895	0.00	0.00	42.06	3.86
2513	7980	2.885644	CTTCGTGCCCGGATGACG	60.886	66.667	0.73	8.40	43.80	4.35
2514	7981	3.195698	GCTTCGTGCCCGGATGAC	61.196	66.667	0.73	0.00	35.15	3.06
2527	7994	2.126417	TATAGAGTCGCGGCGGCTTC	62.126	60.000	31.24	22.02	43.67	3.86
2528	7995	2.131294	CTATAGAGTCGCGGCGGCTT	62.131	60.000	31.24	21.25	43.67	4.35
2530	7997	2.126812	CTATAGAGTCGCGGCGGC	60.127	66.667	20.79	20.79	0.00	6.53
2531	7998	1.913451	CTCCTATAGAGTCGCGGCGG	61.913	65.000	23.46	0.00	37.87	6.13
2532	7999	1.498166	CTCCTATAGAGTCGCGGCG	59.502	63.158	17.70	17.70	37.87	6.46
2533	8000	1.210672	GCTCCTATAGAGTCGCGGC	59.789	63.158	0.21	0.21	45.21	6.53
2534	8001	1.498166	CGCTCCTATAGAGTCGCGG	59.502	63.158	6.13	0.00	45.21	6.46
2535	8002	1.498166	CCGCTCCTATAGAGTCGCG	59.502	63.158	0.00	0.00	45.21	5.87
2536	8003	1.210672	GCCGCTCCTATAGAGTCGC	59.789	63.158	0.00	0.00	45.21	5.19
2537	8004	0.519519	CAGCCGCTCCTATAGAGTCG	59.480	60.000	0.00	1.22	45.21	4.18
2538	8005	1.810151	CTCAGCCGCTCCTATAGAGTC	59.190	57.143	0.00	0.00	45.21	3.36
2539	8006	1.546773	CCTCAGCCGCTCCTATAGAGT	60.547	57.143	0.00	0.00	45.21	3.24
2540	8007	1.173043	CCTCAGCCGCTCCTATAGAG	58.827	60.000	0.00	0.00	46.29	2.43
2541	8008	0.251386	CCCTCAGCCGCTCCTATAGA	60.251	60.000	0.00	0.00	0.00	1.98
2542	8009	1.882989	GCCCTCAGCCGCTCCTATAG	61.883	65.000	0.00	0.00	34.35	1.31
2543	8010	1.908793	GCCCTCAGCCGCTCCTATA	60.909	63.158	0.00	0.00	34.35	1.31
2544	8011	3.237741	GCCCTCAGCCGCTCCTAT	61.238	66.667	0.00	0.00	34.35	2.57
2561	8028	2.943978	AAGGAAGACGCGGTCCAGG	61.944	63.158	22.64	0.00	36.28	4.45
2562	8029	1.738099	CAAGGAAGACGCGGTCCAG	60.738	63.158	22.64	13.46	36.28	3.86
2563	8030	2.342279	CAAGGAAGACGCGGTCCA	59.658	61.111	22.64	0.00	36.28	4.02
2564	8031	3.119096	GCAAGGAAGACGCGGTCC	61.119	66.667	12.47	14.40	32.18	4.46
2565	8032	2.048127	AGCAAGGAAGACGCGGTC	60.048	61.111	12.47	5.76	0.00	4.79
2566	8033	2.048127	GAGCAAGGAAGACGCGGT	60.048	61.111	12.47	0.00	0.00	5.68
2567	8034	2.815647	GGAGCAAGGAAGACGCGG	60.816	66.667	12.47	0.00	0.00	6.46
2568	8035	2.815647	GGGAGCAAGGAAGACGCG	60.816	66.667	3.53	3.53	0.00	6.01
2569	8036	2.579684	ATCGGGAGCAAGGAAGACGC	62.580	60.000	0.00	0.00	0.00	5.19
2570	8037	0.528684	GATCGGGAGCAAGGAAGACG	60.529	60.000	0.00	0.00	0.00	4.18
2571	8038	0.537188	TGATCGGGAGCAAGGAAGAC	59.463	55.000	0.00	0.00	0.00	3.01
2572	8039	0.537188	GTGATCGGGAGCAAGGAAGA	59.463	55.000	0.00	0.00	0.00	2.87
2573	8040	0.807667	CGTGATCGGGAGCAAGGAAG	60.808	60.000	0.00	0.00	0.00	3.46
2574	8041	1.218047	CGTGATCGGGAGCAAGGAA	59.782	57.895	0.00	0.00	0.00	3.36
2575	8042	2.892640	CGTGATCGGGAGCAAGGA	59.107	61.111	0.00	0.00	0.00	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.