Multiple sequence alignment - TraesCS2D01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G098100 chr2D 100.000 6147 0 0 1 6147 50229133 50235279 0.000000e+00 11352.0
1 TraesCS2D01G098100 chr2D 84.404 109 15 2 221 328 624355675 624355568 8.430000e-19 106.0
2 TraesCS2D01G098100 chr2B 91.238 4725 241 73 853 5491 78062679 78067316 0.000000e+00 6272.0
3 TraesCS2D01G098100 chr2B 96.815 471 15 0 1 471 78053210 78053680 0.000000e+00 787.0
4 TraesCS2D01G098100 chr2B 92.982 285 18 2 469 752 78062146 78062429 1.230000e-111 414.0
5 TraesCS2D01G098100 chr2B 90.090 111 4 3 752 855 78062459 78062569 2.990000e-28 137.0
6 TraesCS2D01G098100 chr2B 97.619 42 1 0 5708 5749 493985649 493985608 8.550000e-09 73.1
7 TraesCS2D01G098100 chr2A 93.339 3288 140 30 1689 4940 51937665 51940909 0.000000e+00 4785.0
8 TraesCS2D01G098100 chr2A 88.321 1233 50 21 4941 6145 51940940 51942106 0.000000e+00 1393.0
9 TraesCS2D01G098100 chr2A 90.574 732 37 13 915 1630 51936788 51937503 0.000000e+00 941.0
10 TraesCS2D01G098100 chr2A 89.672 610 60 3 145 752 51935949 51936557 0.000000e+00 774.0
11 TraesCS2D01G098100 chr2A 95.722 187 3 5 752 934 51936587 51936772 4.660000e-76 296.0
12 TraesCS2D01G098100 chr2A 91.333 150 10 2 1616 1765 51937520 51937666 1.040000e-47 202.0
13 TraesCS2D01G098100 chr2A 88.514 148 11 2 1 148 51915272 51915413 2.280000e-39 174.0
14 TraesCS2D01G098100 chr2A 97.619 42 1 0 5708 5749 567733384 567733343 8.550000e-09 73.1
15 TraesCS2D01G098100 chr3D 76.945 347 66 10 177 520 574574475 574574140 1.050000e-42 185.0
16 TraesCS2D01G098100 chr3D 93.750 48 3 0 5702 5749 523157375 523157422 8.550000e-09 73.1
17 TraesCS2D01G098100 chr3D 85.938 64 6 2 5687 5749 610350858 610350797 1.430000e-06 65.8
18 TraesCS2D01G098100 chr1A 76.589 299 64 6 220 516 531481045 531481339 6.380000e-35 159.0
19 TraesCS2D01G098100 chr3A 78.500 200 41 2 180 378 614999879 615000077 5.000000e-26 130.0
20 TraesCS2D01G098100 chr3A 84.375 64 7 2 5687 5749 744438541 744438480 6.650000e-05 60.2
21 TraesCS2D01G098100 chr3B 74.688 320 65 8 177 495 628023822 628024126 1.800000e-25 128.0
22 TraesCS2D01G098100 chr7D 74.459 231 46 8 180 407 31414387 31414167 3.050000e-13 87.9
23 TraesCS2D01G098100 chr7D 81.905 105 17 2 212 316 195266487 195266385 3.050000e-13 87.9
24 TraesCS2D01G098100 chr4A 89.831 59 3 2 5712 5768 523450129 523450186 8.550000e-09 73.1
25 TraesCS2D01G098100 chr6D 95.455 44 2 0 5706 5749 13067132 13067089 3.070000e-08 71.3
26 TraesCS2D01G098100 chr7B 90.385 52 4 1 5712 5763 137453978 137454028 3.980000e-07 67.6
27 TraesCS2D01G098100 chr5B 90.196 51 4 1 5699 5749 491439295 491439246 1.430000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G098100 chr2D 50229133 50235279 6146 False 11352.000000 11352 100.000000 1 6147 1 chr2D.!!$F1 6146
1 TraesCS2D01G098100 chr2B 78062146 78067316 5170 False 2274.333333 6272 91.436667 469 5491 3 chr2B.!!$F2 5022
2 TraesCS2D01G098100 chr2A 51935949 51942106 6157 False 1398.500000 4785 91.493500 145 6145 6 chr2A.!!$F2 6000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.105778 TCTCACAATCGTGCACACCA 59.894 50.000 18.64 0.00 43.28 4.17 F
67 68 0.108585 AATCGTGCACACCAGGTTCT 59.891 50.000 18.64 0.00 0.00 3.01 F
193 195 0.246635 GTGGCGCCACTCTCTTCTTA 59.753 55.000 44.62 11.72 43.12 2.10 F
1007 1199 0.250338 AGGCCACGTCTCAAACTTCC 60.250 55.000 5.01 0.00 0.00 3.46 F
1613 1854 0.926293 GGGGATCCCACATTTCCAGA 59.074 55.000 32.07 0.00 44.65 3.86 F
1768 2085 1.351017 GGATCACAACTCACAAGGGGA 59.649 52.381 0.00 0.00 0.00 4.81 F
3199 3535 1.360393 TTTCCCAGCCCTTGTCACCT 61.360 55.000 0.00 0.00 0.00 4.00 F
3589 3925 0.865111 TGTCGTCAAAACTGCATCGG 59.135 50.000 0.00 0.00 0.00 4.18 F
4372 4708 0.035725 TCTGAAGCTGCTGACCATGG 60.036 55.000 11.19 11.19 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1352 1553 0.251077 AGGCAGAAGCAAACAGGGAG 60.251 55.000 0.00 0.0 44.61 4.30 R
1881 2208 0.522180 CAGTTCGTCAGTAGGAGCGT 59.478 55.000 0.00 0.0 0.00 5.07 R
1882 2209 0.803117 TCAGTTCGTCAGTAGGAGCG 59.197 55.000 0.00 0.0 0.00 5.03 R
2317 2650 0.593128 CAGGTTCAACTTTGAGGCCG 59.407 55.000 0.00 0.0 38.61 6.13 R
2429 2762 1.898472 GCTGAGAGGCCTATATGAGCA 59.102 52.381 4.42 0.0 0.00 4.26 R
3445 3781 2.089980 CCAACTTGCTTCATCCTCCAG 58.910 52.381 0.00 0.0 0.00 3.86 R
4095 4431 0.108804 CTTCTAGGCTGGCGACGAAA 60.109 55.000 0.00 0.0 0.00 3.46 R
5140 5548 0.833287 CTACCCACAGGATGACAGGG 59.167 60.000 0.00 0.0 46.34 4.45 R
5596 6007 0.039911 ACAGAGAGGGCGGTAGAAGT 59.960 55.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.003648 CAGACTCAAGTGTTTCATACCCC 58.996 47.826 0.00 0.00 0.00 4.95
23 24 3.910627 AGACTCAAGTGTTTCATACCCCT 59.089 43.478 0.00 0.00 0.00 4.79
24 25 5.046591 CAGACTCAAGTGTTTCATACCCCTA 60.047 44.000 0.00 0.00 0.00 3.53
25 26 5.187967 AGACTCAAGTGTTTCATACCCCTAG 59.812 44.000 0.00 0.00 0.00 3.02
26 27 5.091552 ACTCAAGTGTTTCATACCCCTAGA 58.908 41.667 0.00 0.00 0.00 2.43
27 28 5.187967 ACTCAAGTGTTTCATACCCCTAGAG 59.812 44.000 0.00 0.00 0.00 2.43
28 29 5.338632 TCAAGTGTTTCATACCCCTAGAGA 58.661 41.667 0.00 0.00 0.00 3.10
29 30 5.187186 TCAAGTGTTTCATACCCCTAGAGAC 59.813 44.000 0.00 0.00 0.00 3.36
30 31 4.031611 AGTGTTTCATACCCCTAGAGACC 58.968 47.826 0.00 0.00 0.00 3.85
31 32 4.031611 GTGTTTCATACCCCTAGAGACCT 58.968 47.826 0.00 0.00 0.00 3.85
32 33 4.470304 GTGTTTCATACCCCTAGAGACCTT 59.530 45.833 0.00 0.00 0.00 3.50
33 34 5.659971 GTGTTTCATACCCCTAGAGACCTTA 59.340 44.000 0.00 0.00 0.00 2.69
34 35 6.155737 GTGTTTCATACCCCTAGAGACCTTAA 59.844 42.308 0.00 0.00 0.00 1.85
35 36 6.906901 TGTTTCATACCCCTAGAGACCTTAAT 59.093 38.462 0.00 0.00 0.00 1.40
36 37 6.996180 TTCATACCCCTAGAGACCTTAATG 57.004 41.667 0.00 0.00 0.00 1.90
37 38 5.403512 TCATACCCCTAGAGACCTTAATGG 58.596 45.833 0.00 0.00 42.93 3.16
57 58 2.639751 GTGTTTCTCACAATCGTGCAC 58.360 47.619 6.82 6.82 45.51 4.57
58 59 2.031560 GTGTTTCTCACAATCGTGCACA 59.968 45.455 18.64 4.45 45.51 4.57
59 60 2.031560 TGTTTCTCACAATCGTGCACAC 59.968 45.455 18.64 3.08 43.28 3.82
60 61 1.225855 TTCTCACAATCGTGCACACC 58.774 50.000 18.64 0.00 43.28 4.16
61 62 0.105778 TCTCACAATCGTGCACACCA 59.894 50.000 18.64 0.00 43.28 4.17
62 63 0.514255 CTCACAATCGTGCACACCAG 59.486 55.000 18.64 6.23 43.28 4.00
63 64 0.884259 TCACAATCGTGCACACCAGG 60.884 55.000 18.64 4.33 43.28 4.45
64 65 1.148273 ACAATCGTGCACACCAGGT 59.852 52.632 18.64 5.00 0.00 4.00
65 66 0.465460 ACAATCGTGCACACCAGGTT 60.465 50.000 18.64 0.00 0.00 3.50
66 67 0.238289 CAATCGTGCACACCAGGTTC 59.762 55.000 18.64 0.00 0.00 3.62
67 68 0.108585 AATCGTGCACACCAGGTTCT 59.891 50.000 18.64 0.00 0.00 3.01
68 69 0.320771 ATCGTGCACACCAGGTTCTC 60.321 55.000 18.64 0.00 0.00 2.87
69 70 1.227527 CGTGCACACCAGGTTCTCA 60.228 57.895 18.64 0.00 0.00 3.27
70 71 0.813610 CGTGCACACCAGGTTCTCAA 60.814 55.000 18.64 0.00 0.00 3.02
71 72 0.947244 GTGCACACCAGGTTCTCAAG 59.053 55.000 13.17 0.00 0.00 3.02
72 73 0.546122 TGCACACCAGGTTCTCAAGT 59.454 50.000 0.00 0.00 0.00 3.16
73 74 0.947244 GCACACCAGGTTCTCAAGTG 59.053 55.000 0.00 0.00 34.61 3.16
74 75 1.747206 GCACACCAGGTTCTCAAGTGT 60.747 52.381 7.20 0.00 42.16 3.55
75 76 2.643551 CACACCAGGTTCTCAAGTGTT 58.356 47.619 0.00 0.00 39.56 3.32
76 77 3.016736 CACACCAGGTTCTCAAGTGTTT 58.983 45.455 0.00 0.00 39.56 2.83
77 78 3.065371 CACACCAGGTTCTCAAGTGTTTC 59.935 47.826 0.00 0.00 39.56 2.78
78 79 3.278574 CACCAGGTTCTCAAGTGTTTCA 58.721 45.455 0.00 0.00 0.00 2.69
79 80 3.885297 CACCAGGTTCTCAAGTGTTTCAT 59.115 43.478 0.00 0.00 0.00 2.57
80 81 5.063204 CACCAGGTTCTCAAGTGTTTCATA 58.937 41.667 0.00 0.00 0.00 2.15
81 82 5.049405 CACCAGGTTCTCAAGTGTTTCATAC 60.049 44.000 0.00 0.00 0.00 2.39
82 83 4.455877 CCAGGTTCTCAAGTGTTTCATACC 59.544 45.833 0.00 0.00 0.00 2.73
83 84 4.455877 CAGGTTCTCAAGTGTTTCATACCC 59.544 45.833 0.00 0.00 0.00 3.69
84 85 3.756963 GGTTCTCAAGTGTTTCATACCCC 59.243 47.826 0.00 0.00 0.00 4.95
85 86 4.506802 GGTTCTCAAGTGTTTCATACCCCT 60.507 45.833 0.00 0.00 0.00 4.79
86 87 5.280317 GGTTCTCAAGTGTTTCATACCCCTA 60.280 44.000 0.00 0.00 0.00 3.53
87 88 5.677319 TCTCAAGTGTTTCATACCCCTAG 57.323 43.478 0.00 0.00 0.00 3.02
88 89 5.338632 TCTCAAGTGTTTCATACCCCTAGA 58.661 41.667 0.00 0.00 0.00 2.43
89 90 5.783360 TCTCAAGTGTTTCATACCCCTAGAA 59.217 40.000 0.00 0.00 0.00 2.10
90 91 5.801380 TCAAGTGTTTCATACCCCTAGAAC 58.199 41.667 0.00 0.00 0.00 3.01
91 92 4.838904 AGTGTTTCATACCCCTAGAACC 57.161 45.455 0.00 0.00 0.00 3.62
92 93 4.436079 AGTGTTTCATACCCCTAGAACCT 58.564 43.478 0.00 0.00 0.00 3.50
93 94 5.596763 AGTGTTTCATACCCCTAGAACCTA 58.403 41.667 0.00 0.00 0.00 3.08
94 95 6.027482 AGTGTTTCATACCCCTAGAACCTAA 58.973 40.000 0.00 0.00 0.00 2.69
95 96 6.070366 AGTGTTTCATACCCCTAGAACCTAAC 60.070 42.308 0.00 0.00 0.00 2.34
96 97 6.027482 TGTTTCATACCCCTAGAACCTAACT 58.973 40.000 0.00 0.00 0.00 2.24
97 98 6.502863 TGTTTCATACCCCTAGAACCTAACTT 59.497 38.462 0.00 0.00 0.00 2.66
98 99 6.803366 TTCATACCCCTAGAACCTAACTTC 57.197 41.667 0.00 0.00 0.00 3.01
99 100 5.845734 TCATACCCCTAGAACCTAACTTCA 58.154 41.667 0.00 0.00 0.00 3.02
100 101 5.897824 TCATACCCCTAGAACCTAACTTCAG 59.102 44.000 0.00 0.00 0.00 3.02
101 102 2.838813 ACCCCTAGAACCTAACTTCAGC 59.161 50.000 0.00 0.00 0.00 4.26
102 103 3.108376 CCCCTAGAACCTAACTTCAGCT 58.892 50.000 0.00 0.00 0.00 4.24
103 104 3.118592 CCCCTAGAACCTAACTTCAGCTG 60.119 52.174 7.63 7.63 0.00 4.24
104 105 3.769844 CCCTAGAACCTAACTTCAGCTGA 59.230 47.826 13.74 13.74 0.00 4.26
105 106 4.142049 CCCTAGAACCTAACTTCAGCTGAG 60.142 50.000 17.43 13.36 0.00 3.35
106 107 4.464597 CCTAGAACCTAACTTCAGCTGAGT 59.535 45.833 17.43 14.00 0.00 3.41
107 108 4.529109 AGAACCTAACTTCAGCTGAGTC 57.471 45.455 17.43 5.73 0.00 3.36
108 109 3.259625 AGAACCTAACTTCAGCTGAGTCC 59.740 47.826 17.43 0.00 0.00 3.85
109 110 2.609747 ACCTAACTTCAGCTGAGTCCA 58.390 47.619 17.43 0.48 0.00 4.02
110 111 2.564947 ACCTAACTTCAGCTGAGTCCAG 59.435 50.000 17.43 13.77 43.22 3.86
111 112 2.828520 CCTAACTTCAGCTGAGTCCAGA 59.171 50.000 17.43 0.00 43.02 3.86
112 113 3.450457 CCTAACTTCAGCTGAGTCCAGAT 59.550 47.826 17.43 8.70 43.02 2.90
113 114 3.608316 AACTTCAGCTGAGTCCAGATC 57.392 47.619 17.43 0.00 43.02 2.75
114 115 2.533916 ACTTCAGCTGAGTCCAGATCA 58.466 47.619 17.43 0.00 43.02 2.92
115 116 3.106054 ACTTCAGCTGAGTCCAGATCAT 58.894 45.455 17.43 0.00 43.02 2.45
116 117 4.285020 ACTTCAGCTGAGTCCAGATCATA 58.715 43.478 17.43 0.00 43.02 2.15
117 118 4.713814 ACTTCAGCTGAGTCCAGATCATAA 59.286 41.667 17.43 0.00 43.02 1.90
118 119 4.933505 TCAGCTGAGTCCAGATCATAAG 57.066 45.455 13.74 0.00 43.02 1.73
119 120 4.540715 TCAGCTGAGTCCAGATCATAAGA 58.459 43.478 13.74 0.00 43.02 2.10
120 121 4.958581 TCAGCTGAGTCCAGATCATAAGAA 59.041 41.667 13.74 0.00 43.02 2.52
121 122 5.601729 TCAGCTGAGTCCAGATCATAAGAAT 59.398 40.000 13.74 0.00 43.02 2.40
122 123 6.779539 TCAGCTGAGTCCAGATCATAAGAATA 59.220 38.462 13.74 0.00 43.02 1.75
123 124 7.039853 TCAGCTGAGTCCAGATCATAAGAATAG 60.040 40.741 13.74 0.00 43.02 1.73
124 125 6.211184 AGCTGAGTCCAGATCATAAGAATAGG 59.789 42.308 0.00 0.00 43.02 2.57
125 126 6.352016 TGAGTCCAGATCATAAGAATAGGC 57.648 41.667 0.00 0.00 0.00 3.93
126 127 5.840693 TGAGTCCAGATCATAAGAATAGGCA 59.159 40.000 0.00 0.00 0.00 4.75
127 128 6.327365 TGAGTCCAGATCATAAGAATAGGCAA 59.673 38.462 0.00 0.00 0.00 4.52
128 129 7.016957 TGAGTCCAGATCATAAGAATAGGCAAT 59.983 37.037 0.00 0.00 0.00 3.56
129 130 7.166851 AGTCCAGATCATAAGAATAGGCAATG 58.833 38.462 0.00 0.00 0.00 2.82
130 131 6.939163 GTCCAGATCATAAGAATAGGCAATGT 59.061 38.462 0.00 0.00 0.00 2.71
131 132 7.118971 GTCCAGATCATAAGAATAGGCAATGTC 59.881 40.741 0.00 0.00 0.00 3.06
132 133 6.373774 CCAGATCATAAGAATAGGCAATGTCC 59.626 42.308 0.00 0.00 0.00 4.02
133 134 7.166851 CAGATCATAAGAATAGGCAATGTCCT 58.833 38.462 0.00 2.15 40.21 3.85
134 135 8.316946 CAGATCATAAGAATAGGCAATGTCCTA 58.683 37.037 6.03 6.03 42.45 2.94
169 170 3.181445 TGTGTCTACCCTTTGCACTTCAT 60.181 43.478 0.00 0.00 0.00 2.57
193 195 0.246635 GTGGCGCCACTCTCTTCTTA 59.753 55.000 44.62 11.72 43.12 2.10
198 200 2.668945 GCGCCACTCTCTTCTTAAAGAC 59.331 50.000 0.00 0.00 36.59 3.01
203 205 3.604627 CACTCTCTTCTTAAAGACGTCGC 59.395 47.826 10.46 0.00 36.59 5.19
204 206 3.502979 ACTCTCTTCTTAAAGACGTCGCT 59.497 43.478 10.46 3.68 36.59 4.93
205 207 3.822996 TCTCTTCTTAAAGACGTCGCTG 58.177 45.455 10.46 0.52 36.59 5.18
210 212 3.076621 TCTTAAAGACGTCGCTGAGGTA 58.923 45.455 10.46 0.00 30.56 3.08
216 218 1.452651 CGTCGCTGAGGTACCCCTA 60.453 63.158 8.74 0.00 42.86 3.53
218 220 1.544093 CGTCGCTGAGGTACCCCTATA 60.544 57.143 8.74 0.00 42.86 1.31
232 234 1.411612 CCCTATACGTGTCAGGGTTCC 59.588 57.143 18.20 0.00 43.58 3.62
274 276 1.103803 TGGACTAGGTAGCAGCGAAG 58.896 55.000 0.00 0.00 0.00 3.79
295 297 1.730612 CTTAGCGTCGTTTTCCCTTCC 59.269 52.381 0.00 0.00 0.00 3.46
335 337 3.244249 CCTTAGGTGTTCTAGGGCATAGC 60.244 52.174 0.32 0.00 38.20 2.97
336 338 1.879575 AGGTGTTCTAGGGCATAGCA 58.120 50.000 0.32 0.00 0.00 3.49
337 339 2.412591 AGGTGTTCTAGGGCATAGCAT 58.587 47.619 0.32 0.00 0.00 3.79
351 353 4.212847 GGCATAGCATGACATTGTACTCAG 59.787 45.833 0.00 0.00 38.49 3.35
358 360 5.051173 GCATGACATTGTACTCAGATCTTCG 60.051 44.000 0.00 0.00 0.00 3.79
359 361 5.644977 TGACATTGTACTCAGATCTTCGT 57.355 39.130 0.00 0.00 0.00 3.85
360 362 6.753107 TGACATTGTACTCAGATCTTCGTA 57.247 37.500 0.00 0.00 0.00 3.43
371 373 7.607250 ACTCAGATCTTCGTATGTTCTCTTTT 58.393 34.615 0.00 0.00 0.00 2.27
416 419 3.118112 GCATGATCCGATTATCCTGGGAT 60.118 47.826 7.33 7.33 41.83 3.85
422 425 3.324846 TCCGATTATCCTGGGATCAGTTG 59.675 47.826 5.29 0.00 39.31 3.16
430 433 3.843619 TCCTGGGATCAGTTGTTGTATGA 59.156 43.478 0.00 0.00 39.31 2.15
442 445 3.731431 TGTTGTATGAGGACTACCCCAT 58.269 45.455 0.00 0.00 36.73 4.00
449 452 1.486726 GAGGACTACCCCATCACCTTG 59.513 57.143 0.00 0.00 36.73 3.61
459 462 2.159156 CCCATCACCTTGTATCGTTCGA 60.159 50.000 0.00 0.00 0.00 3.71
461 464 3.428999 CCATCACCTTGTATCGTTCGACT 60.429 47.826 0.00 0.00 0.00 4.18
520 523 4.589908 AGGTTGAAAGCCTATTTCGTGAT 58.410 39.130 0.00 0.00 33.97 3.06
556 560 3.868369 GCAATATATGGCGCCAGGTAGAA 60.868 47.826 35.36 16.47 0.00 2.10
585 589 2.224793 GCTCCAAACTTAAGGTGACCCT 60.225 50.000 7.53 0.00 45.63 4.34
598 602 2.158943 GGTGACCCTATGCTACCACTTC 60.159 54.545 0.00 0.00 0.00 3.01
601 605 3.031736 GACCCTATGCTACCACTTCTCA 58.968 50.000 0.00 0.00 0.00 3.27
617 621 8.957466 ACCACTTCTCAAAAAGTATATTTAGGC 58.043 33.333 0.00 0.00 37.38 3.93
623 627 9.221933 TCTCAAAAAGTATATTTAGGCGTTTCA 57.778 29.630 0.00 0.00 0.00 2.69
724 728 9.442047 TTCAAATACACACCAAGAAACAAAAAT 57.558 25.926 0.00 0.00 0.00 1.82
961 1150 0.671781 CCGTCCAGTGAGAGGCAAAG 60.672 60.000 0.00 0.00 0.00 2.77
1007 1199 0.250338 AGGCCACGTCTCAAACTTCC 60.250 55.000 5.01 0.00 0.00 3.46
1343 1544 1.304134 GTTTTGCCCCTGTCCCGAT 60.304 57.895 0.00 0.00 0.00 4.18
1349 1550 1.449601 CCCCTGTCCCGATTCGTTG 60.450 63.158 5.20 0.00 0.00 4.10
1352 1553 2.046700 TGTCCCGATTCGTTGGGC 60.047 61.111 5.20 2.21 45.60 5.36
1355 1556 2.513897 CCCGATTCGTTGGGCTCC 60.514 66.667 5.20 0.00 38.90 4.70
1356 1557 2.513897 CCGATTCGTTGGGCTCCC 60.514 66.667 5.20 0.00 0.00 4.30
1373 1574 1.288127 CCTGTTTGCTTCTGCCTGC 59.712 57.895 0.00 0.00 38.71 4.85
1575 1784 6.311690 GTCATGCTCTCCTAACTGTTAAGTTC 59.688 42.308 1.46 0.00 43.34 3.01
1576 1785 5.801531 TGCTCTCCTAACTGTTAAGTTCA 57.198 39.130 1.46 0.00 43.34 3.18
1579 1788 5.989777 GCTCTCCTAACTGTTAAGTTCAACA 59.010 40.000 1.46 0.00 43.34 3.33
1586 1795 7.384115 CCTAACTGTTAAGTTCAACAATCTCGA 59.616 37.037 1.46 0.00 43.34 4.04
1602 1811 2.704065 TCTCGAACTAATTGGGGATCCC 59.296 50.000 23.95 23.95 45.71 3.85
1613 1854 0.926293 GGGGATCCCACATTTCCAGA 59.074 55.000 32.07 0.00 44.65 3.86
1616 1857 3.026694 GGGATCCCACATTTCCAGAAAG 58.973 50.000 26.95 0.00 33.07 2.62
1665 1907 4.627035 AGCTTTTCAGAAAACAGTTGTTGC 59.373 37.500 4.06 4.47 38.44 4.17
1677 1919 2.035832 CAGTTGTTGCGGGAAAATTCCT 59.964 45.455 11.75 0.00 46.72 3.36
1710 1952 7.039270 GTGAGTGGTTTAACCTGTCAAATTTT 58.961 34.615 15.68 0.00 39.58 1.82
1742 1984 3.815401 CTGGTATGTTAGCCAGTTATGCC 59.185 47.826 2.66 0.00 45.28 4.40
1746 1988 2.985896 TGTTAGCCAGTTATGCCTGAC 58.014 47.619 0.00 0.00 34.23 3.51
1768 2085 1.351017 GGATCACAACTCACAAGGGGA 59.649 52.381 0.00 0.00 0.00 4.81
1772 2090 2.174639 TCACAACTCACAAGGGGACATT 59.825 45.455 0.00 0.00 0.00 2.71
1775 2093 3.117512 ACAACTCACAAGGGGACATTTCT 60.118 43.478 0.00 0.00 0.00 2.52
1776 2094 3.425162 ACTCACAAGGGGACATTTCTC 57.575 47.619 0.00 0.00 0.00 2.87
1788 2106 3.438434 GGACATTTCTCCAGTTTCTCTGC 59.562 47.826 0.00 0.00 42.38 4.26
1790 2108 3.073650 ACATTTCTCCAGTTTCTCTGCCT 59.926 43.478 0.00 0.00 42.38 4.75
1836 2154 6.128526 GGTTTGCTCATACTTCACACTACTTC 60.129 42.308 0.00 0.00 0.00 3.01
1837 2155 5.984695 TGCTCATACTTCACACTACTTCT 57.015 39.130 0.00 0.00 0.00 2.85
1853 2179 8.867097 ACACTACTTCTATCTAACACCAAAAGA 58.133 33.333 0.00 0.00 0.00 2.52
1862 2188 7.894376 ATCTAACACCAAAAGAAATGCATTG 57.106 32.000 13.82 0.00 0.00 2.82
1878 2205 4.567971 TGCATTGATTCCAACCAAATGTC 58.432 39.130 0.00 0.00 34.72 3.06
1879 2206 4.040095 TGCATTGATTCCAACCAAATGTCA 59.960 37.500 0.00 0.00 34.72 3.58
1880 2207 5.180271 GCATTGATTCCAACCAAATGTCAT 58.820 37.500 0.00 0.00 34.72 3.06
1881 2208 6.070938 TGCATTGATTCCAACCAAATGTCATA 60.071 34.615 0.00 0.00 34.72 2.15
1882 2209 6.256321 GCATTGATTCCAACCAAATGTCATAC 59.744 38.462 0.00 0.00 34.72 2.39
1883 2210 5.559427 TGATTCCAACCAAATGTCATACG 57.441 39.130 0.00 0.00 0.00 3.06
1884 2211 3.840890 TTCCAACCAAATGTCATACGC 57.159 42.857 0.00 0.00 0.00 4.42
1885 2212 3.066291 TCCAACCAAATGTCATACGCT 57.934 42.857 0.00 0.00 0.00 5.07
1888 2215 3.009723 CAACCAAATGTCATACGCTCCT 58.990 45.455 0.00 0.00 0.00 3.69
1894 2221 3.992260 ATGTCATACGCTCCTACTGAC 57.008 47.619 0.00 0.00 37.36 3.51
1896 2223 1.938577 GTCATACGCTCCTACTGACGA 59.061 52.381 0.00 0.00 0.00 4.20
1903 2230 1.813786 GCTCCTACTGACGAACTGACT 59.186 52.381 0.00 0.00 0.00 3.41
1933 2261 3.591527 TGAGGGGACAATCCATGTAAAGT 59.408 43.478 0.00 0.00 44.12 2.66
2011 2340 8.655935 ATTTCCTGAATAAATGTTGTCTTCCT 57.344 30.769 0.00 0.00 0.00 3.36
2013 2342 5.874810 TCCTGAATAAATGTTGTCTTCCTCG 59.125 40.000 0.00 0.00 0.00 4.63
2014 2343 5.447818 CCTGAATAAATGTTGTCTTCCTCGC 60.448 44.000 0.00 0.00 0.00 5.03
2027 2356 3.623060 TCTTCCTCGCATCATAAAACTGC 59.377 43.478 0.00 0.00 0.00 4.40
2037 2366 5.335127 CATCATAAAACTGCTTGTACCAGC 58.665 41.667 11.91 11.91 40.55 4.85
2041 2373 6.884295 TCATAAAACTGCTTGTACCAGCTAAT 59.116 34.615 18.75 2.94 40.79 1.73
2072 2404 9.809096 TTAACTGCTTAAATTTTGTGTGATCAA 57.191 25.926 0.00 0.00 0.00 2.57
2073 2405 7.935338 ACTGCTTAAATTTTGTGTGATCAAG 57.065 32.000 0.00 0.00 0.00 3.02
2110 2442 5.528043 TGTGCATGACCACAAGTAATTTT 57.472 34.783 0.00 0.00 42.33 1.82
2116 2448 6.366061 GCATGACCACAAGTAATTTTTCCTTC 59.634 38.462 0.00 0.00 0.00 3.46
2118 2450 7.654022 TGACCACAAGTAATTTTTCCTTCTT 57.346 32.000 0.00 0.00 0.00 2.52
2121 2453 7.272244 ACCACAAGTAATTTTTCCTTCTTTGG 58.728 34.615 0.00 0.00 0.00 3.28
2131 2463 3.817709 TCCTTCTTTGGTGCAAAAAGG 57.182 42.857 18.30 11.49 39.70 3.11
2132 2464 2.158971 TCCTTCTTTGGTGCAAAAAGGC 60.159 45.455 18.30 0.00 39.08 4.35
2149 2481 1.613437 AGGCAACATGTTTAGTGTGGC 59.387 47.619 8.77 9.87 44.10 5.01
2154 2486 4.155826 GCAACATGTTTAGTGTGGCAGATA 59.844 41.667 8.77 0.00 44.21 1.98
2158 2490 5.046304 ACATGTTTAGTGTGGCAGATAGTCT 60.046 40.000 0.00 0.00 0.00 3.24
2159 2491 6.154534 ACATGTTTAGTGTGGCAGATAGTCTA 59.845 38.462 0.00 0.00 0.00 2.59
2160 2492 6.599356 TGTTTAGTGTGGCAGATAGTCTAA 57.401 37.500 0.00 0.00 0.00 2.10
2317 2650 7.605691 AGATGCAGCATATTCTATTGTTAGACC 59.394 37.037 8.22 0.00 34.15 3.85
2354 2687 2.161808 CCTGTCATCAGTACTTCGACGT 59.838 50.000 0.00 0.00 39.82 4.34
2380 2713 6.491394 CATCAAACGTAAGAACCTTTTGTCA 58.509 36.000 0.00 0.00 43.62 3.58
2396 2729 6.040842 CCTTTTGTCATTCCTTTCTCCTTTCA 59.959 38.462 0.00 0.00 0.00 2.69
3187 3523 3.568538 CTTGAGACGCAAATTTTCCCAG 58.431 45.455 0.00 0.00 35.74 4.45
3199 3535 1.360393 TTTCCCAGCCCTTGTCACCT 61.360 55.000 0.00 0.00 0.00 4.00
3209 3545 3.118261 GCCCTTGTCACCTCTTATCATCA 60.118 47.826 0.00 0.00 0.00 3.07
3303 3639 2.181584 GCAGCTGCTTGCAGATTCT 58.818 52.632 31.33 10.52 45.94 2.40
3360 3696 5.752955 GCTCTCAAGGTCATTATCTGTCTTC 59.247 44.000 0.00 0.00 0.00 2.87
3406 3742 1.446907 GCTTCGGATATGGGCTGATG 58.553 55.000 0.00 0.00 0.00 3.07
3445 3781 6.026513 GCACAGAATAAGCTCAAATCTGAAC 58.973 40.000 19.51 10.61 39.85 3.18
3528 3864 6.072230 AGGAAAGCACTGCTAAATTTCTTCTC 60.072 38.462 3.33 0.00 38.25 2.87
3531 3867 4.940654 AGCACTGCTAAATTTCTTCTCTCC 59.059 41.667 0.21 0.00 36.99 3.71
3589 3925 0.865111 TGTCGTCAAAACTGCATCGG 59.135 50.000 0.00 0.00 0.00 4.18
4046 4382 4.773674 TGGATCATCAAATGAACAAAGCCT 59.226 37.500 0.00 0.00 43.50 4.58
4047 4383 5.107133 GGATCATCAAATGAACAAAGCCTG 58.893 41.667 0.00 0.00 43.50 4.85
4280 4616 3.059461 GTCGTCCAGCTAAGAGTCGATAG 60.059 52.174 0.00 2.61 0.00 2.08
4290 4626 0.249657 GAGTCGATAGCAAGGCCCTG 60.250 60.000 0.00 0.00 0.00 4.45
4308 4644 2.587194 CTCCGCATCTTCAGGCCG 60.587 66.667 0.00 0.00 0.00 6.13
4372 4708 0.035725 TCTGAAGCTGCTGACCATGG 60.036 55.000 11.19 11.19 0.00 3.66
4506 4842 1.219393 CCTGAGAAGCCGGAAGTCC 59.781 63.158 5.05 0.00 0.00 3.85
4521 4857 2.622064 AGTCCGGTGGATAATCTTGC 57.378 50.000 0.00 0.00 32.73 4.01
4527 4863 4.523173 TCCGGTGGATAATCTTGCTAGTAG 59.477 45.833 0.00 0.00 0.00 2.57
4599 4942 4.008933 GCCGGTGCAGACTGTCCT 62.009 66.667 1.90 0.00 37.47 3.85
4668 5011 1.217882 CCGACTTGACTGACAACACC 58.782 55.000 0.00 0.00 34.56 4.16
4671 5014 1.940613 GACTTGACTGACAACACCACC 59.059 52.381 0.00 0.00 34.56 4.61
4672 5015 1.280710 ACTTGACTGACAACACCACCA 59.719 47.619 0.00 0.00 34.56 4.17
4698 5049 3.047796 CTGCAGAAAAAGATGCACACAC 58.952 45.455 8.42 0.00 46.97 3.82
4700 5051 3.119209 TGCAGAAAAAGATGCACACACAA 60.119 39.130 0.00 0.00 46.97 3.33
4701 5052 3.864583 GCAGAAAAAGATGCACACACAAA 59.135 39.130 0.00 0.00 42.11 2.83
4702 5053 4.259930 GCAGAAAAAGATGCACACACAAAC 60.260 41.667 0.00 0.00 42.11 2.93
4703 5054 5.104374 CAGAAAAAGATGCACACACAAACT 58.896 37.500 0.00 0.00 0.00 2.66
4705 5056 6.751425 CAGAAAAAGATGCACACACAAACTAA 59.249 34.615 0.00 0.00 0.00 2.24
4706 5057 7.275341 CAGAAAAAGATGCACACACAAACTAAA 59.725 33.333 0.00 0.00 0.00 1.85
4707 5058 7.489113 AGAAAAAGATGCACACACAAACTAAAG 59.511 33.333 0.00 0.00 0.00 1.85
4708 5059 4.228912 AGATGCACACACAAACTAAAGC 57.771 40.909 0.00 0.00 0.00 3.51
4709 5060 3.631686 AGATGCACACACAAACTAAAGCA 59.368 39.130 0.00 0.00 35.03 3.91
4720 5071 4.142026 ACAAACTAAAGCAAAACTCCACCC 60.142 41.667 0.00 0.00 0.00 4.61
4726 5077 1.528309 CAAAACTCCACCCACGGCT 60.528 57.895 0.00 0.00 0.00 5.52
4823 5190 4.957296 ACTTTCTTACTGGATTGACACGT 58.043 39.130 0.00 0.00 0.00 4.49
4844 5211 3.995199 TCATCTGTGACAAACTGGAGAC 58.005 45.455 0.00 0.00 0.00 3.36
4859 5226 1.455786 GGAGACAATGACAACACGACG 59.544 52.381 0.00 0.00 0.00 5.12
4868 5236 0.320374 ACAACACGACGGGATGACAT 59.680 50.000 14.80 0.00 0.00 3.06
4871 5239 2.794910 CAACACGACGGGATGACATATC 59.205 50.000 2.90 0.00 0.00 1.63
4925 5293 2.104622 TGCTTTGACTGACCTGATCACA 59.895 45.455 0.00 0.00 32.37 3.58
4959 5360 3.378112 CACCACCGCAAACATAGATTGAT 59.622 43.478 0.00 0.00 0.00 2.57
4962 5363 4.799949 CCACCGCAAACATAGATTGATTTG 59.200 41.667 0.00 0.00 35.57 2.32
5140 5548 7.464444 CGGTGGATTGTTTTATTGATTCATTGC 60.464 37.037 0.00 0.00 0.00 3.56
5151 5559 2.242965 TGATTCATTGCCCTGTCATCCT 59.757 45.455 0.00 0.00 0.00 3.24
5217 5625 9.308318 GTTTGTTGAGAATTCCTAGAGATAGAC 57.692 37.037 0.65 0.00 0.00 2.59
5289 5698 2.098117 CGGCCTTGACTTCCATTCAATC 59.902 50.000 0.00 0.00 32.57 2.67
5321 5730 2.165641 GCGTGATGTATCGATATGGGGA 59.834 50.000 8.66 0.00 0.00 4.81
5348 5758 3.330701 AGAGGTCAATGTGTGTAATGGGT 59.669 43.478 0.00 0.00 0.00 4.51
5400 5811 3.558931 ATCCAAATGGCGACTGTATGA 57.441 42.857 0.00 0.00 34.44 2.15
5407 5818 1.482182 TGGCGACTGTATGAAGCAGAT 59.518 47.619 0.00 0.00 37.40 2.90
5408 5819 2.693074 TGGCGACTGTATGAAGCAGATA 59.307 45.455 0.00 0.00 37.40 1.98
5415 5826 4.278669 ACTGTATGAAGCAGATACCGTAGG 59.721 45.833 0.00 0.00 45.22 3.18
5467 5878 7.843490 ATTAACAGCGACATGTACAAATACT 57.157 32.000 0.00 0.00 31.70 2.12
5596 6007 2.230266 GCTTCGGCAATTCCAGGTTTTA 59.770 45.455 0.00 0.00 41.33 1.52
5628 6042 3.929610 CCCTCTCTGTTTCTTTAGCTTCG 59.070 47.826 0.00 0.00 0.00 3.79
5634 6048 6.706270 TCTCTGTTTCTTTAGCTTCGTTGATT 59.294 34.615 0.00 0.00 0.00 2.57
5667 6083 9.743937 GTTACGAAAATATGTACGAATTGTGAA 57.256 29.630 0.00 0.00 0.00 3.18
5704 6120 8.356657 TGTTGTAGGGTTTCAAAAATGTATGAG 58.643 33.333 0.00 0.00 0.00 2.90
5727 6143 6.743788 AGTAGTAAATACTCCCTCTGTTCCT 58.256 40.000 0.00 0.00 40.99 3.36
5728 6144 7.880623 AGTAGTAAATACTCCCTCTGTTCCTA 58.119 38.462 0.00 0.00 40.99 2.94
5729 6145 8.342270 AGTAGTAAATACTCCCTCTGTTCCTAA 58.658 37.037 0.00 0.00 40.99 2.69
5730 6146 8.975295 GTAGTAAATACTCCCTCTGTTCCTAAA 58.025 37.037 0.00 0.00 37.73 1.85
5731 6147 8.625467 AGTAAATACTCCCTCTGTTCCTAAAT 57.375 34.615 0.00 0.00 0.00 1.40
5732 6148 9.725206 AGTAAATACTCCCTCTGTTCCTAAATA 57.275 33.333 0.00 0.00 0.00 1.40
5740 6156 6.837568 TCCCTCTGTTCCTAAATATAAGACGT 59.162 38.462 0.00 0.00 0.00 4.34
5752 6168 5.813080 ATATAAGACGTTTTGGCAGGAAC 57.187 39.130 0.83 5.93 0.00 3.62
5788 6204 8.614814 ACATAGGAATATTATAGGGTTGCATGT 58.385 33.333 0.00 0.00 0.00 3.21
5807 6223 2.698274 TGTGCAGAACAGAGGTTAGTGA 59.302 45.455 0.00 0.00 37.36 3.41
5825 6241 7.044314 GGTTAGTGAAAACACGAGAATTTTGTG 60.044 37.037 0.00 4.66 45.26 3.33
5845 6261 5.875224 TGTGGAATCCAGTGTTTAATCTGA 58.125 37.500 0.27 0.00 32.34 3.27
5970 6399 2.684192 TTTCCCCGGAACACGCACAT 62.684 55.000 0.73 0.00 42.52 3.21
6037 6466 6.420008 ACAAGAGTACGTAAAATATCCATCGC 59.580 38.462 0.00 0.00 0.00 4.58
6039 6468 6.509656 AGAGTACGTAAAATATCCATCGCAA 58.490 36.000 0.00 0.00 0.00 4.85
6040 6469 6.641314 AGAGTACGTAAAATATCCATCGCAAG 59.359 38.462 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.003648 GGGGTATGAAACACTTGAGTCTG 58.996 47.826 0.00 0.00 0.00 3.51
1 2 3.910627 AGGGGTATGAAACACTTGAGTCT 59.089 43.478 0.00 0.00 0.00 3.24
2 3 4.287766 AGGGGTATGAAACACTTGAGTC 57.712 45.455 0.00 0.00 0.00 3.36
3 4 5.091552 TCTAGGGGTATGAAACACTTGAGT 58.908 41.667 0.00 0.00 0.00 3.41
4 5 5.422331 TCTCTAGGGGTATGAAACACTTGAG 59.578 44.000 0.00 0.00 37.58 3.02
5 6 5.187186 GTCTCTAGGGGTATGAAACACTTGA 59.813 44.000 0.00 0.00 0.00 3.02
6 7 5.420409 GTCTCTAGGGGTATGAAACACTTG 58.580 45.833 0.00 0.00 0.00 3.16
7 8 4.470304 GGTCTCTAGGGGTATGAAACACTT 59.530 45.833 0.00 0.00 0.00 3.16
8 9 4.031611 GGTCTCTAGGGGTATGAAACACT 58.968 47.826 0.00 0.00 0.00 3.55
9 10 4.031611 AGGTCTCTAGGGGTATGAAACAC 58.968 47.826 0.00 0.00 0.00 3.32
10 11 4.348020 AGGTCTCTAGGGGTATGAAACA 57.652 45.455 0.00 0.00 0.00 2.83
11 12 6.803366 TTAAGGTCTCTAGGGGTATGAAAC 57.197 41.667 0.00 0.00 0.00 2.78
12 13 6.329197 CCATTAAGGTCTCTAGGGGTATGAAA 59.671 42.308 0.00 0.00 0.00 2.69
13 14 5.844516 CCATTAAGGTCTCTAGGGGTATGAA 59.155 44.000 0.00 0.00 0.00 2.57
14 15 5.403512 CCATTAAGGTCTCTAGGGGTATGA 58.596 45.833 0.00 0.00 0.00 2.15
15 16 5.746990 CCATTAAGGTCTCTAGGGGTATG 57.253 47.826 0.00 0.00 0.00 2.39
46 47 0.465460 AACCTGGTGTGCACGATTGT 60.465 50.000 13.13 2.66 0.00 2.71
47 48 0.238289 GAACCTGGTGTGCACGATTG 59.762 55.000 13.13 2.60 0.00 2.67
48 49 0.108585 AGAACCTGGTGTGCACGATT 59.891 50.000 13.13 0.00 0.00 3.34
49 50 0.320771 GAGAACCTGGTGTGCACGAT 60.321 55.000 13.13 0.00 0.00 3.73
50 51 1.069090 GAGAACCTGGTGTGCACGA 59.931 57.895 13.13 0.00 0.00 4.35
51 52 0.813610 TTGAGAACCTGGTGTGCACG 60.814 55.000 13.13 0.00 0.00 5.34
52 53 0.947244 CTTGAGAACCTGGTGTGCAC 59.053 55.000 10.75 10.75 0.00 4.57
53 54 0.546122 ACTTGAGAACCTGGTGTGCA 59.454 50.000 0.00 0.00 0.00 4.57
54 55 0.947244 CACTTGAGAACCTGGTGTGC 59.053 55.000 0.00 0.00 0.00 4.57
55 56 2.332063 ACACTTGAGAACCTGGTGTG 57.668 50.000 0.00 5.61 39.27 3.82
56 57 3.279434 GAAACACTTGAGAACCTGGTGT 58.721 45.455 0.00 0.00 41.95 4.16
57 58 3.278574 TGAAACACTTGAGAACCTGGTG 58.721 45.455 0.00 0.00 0.00 4.17
58 59 3.644966 TGAAACACTTGAGAACCTGGT 57.355 42.857 0.00 0.00 0.00 4.00
59 60 4.455877 GGTATGAAACACTTGAGAACCTGG 59.544 45.833 0.00 0.00 0.00 4.45
60 61 4.455877 GGGTATGAAACACTTGAGAACCTG 59.544 45.833 0.00 0.00 0.00 4.00
61 62 4.506802 GGGGTATGAAACACTTGAGAACCT 60.507 45.833 0.00 0.00 0.00 3.50
62 63 3.756963 GGGGTATGAAACACTTGAGAACC 59.243 47.826 0.00 0.00 0.00 3.62
63 64 4.652822 AGGGGTATGAAACACTTGAGAAC 58.347 43.478 0.00 0.00 0.00 3.01
64 65 4.993705 AGGGGTATGAAACACTTGAGAA 57.006 40.909 0.00 0.00 0.00 2.87
65 66 5.338632 TCTAGGGGTATGAAACACTTGAGA 58.661 41.667 0.00 0.00 0.00 3.27
66 67 5.677319 TCTAGGGGTATGAAACACTTGAG 57.323 43.478 0.00 0.00 0.00 3.02
67 68 5.280317 GGTTCTAGGGGTATGAAACACTTGA 60.280 44.000 0.00 0.00 0.00 3.02
68 69 4.941873 GGTTCTAGGGGTATGAAACACTTG 59.058 45.833 0.00 0.00 0.00 3.16
69 70 4.850386 AGGTTCTAGGGGTATGAAACACTT 59.150 41.667 0.00 0.00 30.51 3.16
70 71 4.436079 AGGTTCTAGGGGTATGAAACACT 58.564 43.478 0.00 0.00 30.51 3.55
71 72 4.838904 AGGTTCTAGGGGTATGAAACAC 57.161 45.455 0.00 0.00 30.51 3.32
72 73 6.027482 AGTTAGGTTCTAGGGGTATGAAACA 58.973 40.000 0.00 0.00 30.51 2.83
73 74 6.556974 AGTTAGGTTCTAGGGGTATGAAAC 57.443 41.667 0.00 0.00 0.00 2.78
74 75 6.731919 TGAAGTTAGGTTCTAGGGGTATGAAA 59.268 38.462 0.00 0.00 0.00 2.69
75 76 6.266080 TGAAGTTAGGTTCTAGGGGTATGAA 58.734 40.000 0.00 0.00 0.00 2.57
76 77 5.845734 TGAAGTTAGGTTCTAGGGGTATGA 58.154 41.667 0.00 0.00 0.00 2.15
77 78 5.453480 GCTGAAGTTAGGTTCTAGGGGTATG 60.453 48.000 0.00 0.00 0.00 2.39
78 79 4.654724 GCTGAAGTTAGGTTCTAGGGGTAT 59.345 45.833 0.00 0.00 0.00 2.73
79 80 4.028825 GCTGAAGTTAGGTTCTAGGGGTA 58.971 47.826 0.00 0.00 0.00 3.69
80 81 2.838813 GCTGAAGTTAGGTTCTAGGGGT 59.161 50.000 0.00 0.00 0.00 4.95
81 82 3.108376 AGCTGAAGTTAGGTTCTAGGGG 58.892 50.000 0.00 0.00 0.00 4.79
82 83 3.769844 TCAGCTGAAGTTAGGTTCTAGGG 59.230 47.826 15.67 0.00 0.00 3.53
83 84 4.464597 ACTCAGCTGAAGTTAGGTTCTAGG 59.535 45.833 18.85 3.08 0.00 3.02
84 85 5.393678 GGACTCAGCTGAAGTTAGGTTCTAG 60.394 48.000 18.85 3.53 0.00 2.43
85 86 4.463186 GGACTCAGCTGAAGTTAGGTTCTA 59.537 45.833 18.85 0.00 0.00 2.10
86 87 3.259625 GGACTCAGCTGAAGTTAGGTTCT 59.740 47.826 18.85 0.00 0.00 3.01
87 88 3.006967 TGGACTCAGCTGAAGTTAGGTTC 59.993 47.826 18.85 10.20 0.00 3.62
88 89 2.972713 TGGACTCAGCTGAAGTTAGGTT 59.027 45.455 18.85 0.00 0.00 3.50
89 90 2.564947 CTGGACTCAGCTGAAGTTAGGT 59.435 50.000 18.85 10.87 33.86 3.08
90 91 2.828520 TCTGGACTCAGCTGAAGTTAGG 59.171 50.000 18.85 7.37 40.69 2.69
91 92 4.159321 TGATCTGGACTCAGCTGAAGTTAG 59.841 45.833 18.85 17.21 40.69 2.34
92 93 4.089361 TGATCTGGACTCAGCTGAAGTTA 58.911 43.478 18.85 9.96 40.69 2.24
93 94 2.902486 TGATCTGGACTCAGCTGAAGTT 59.098 45.455 18.85 7.13 40.69 2.66
94 95 2.533916 TGATCTGGACTCAGCTGAAGT 58.466 47.619 18.85 17.04 40.69 3.01
95 96 3.823281 ATGATCTGGACTCAGCTGAAG 57.177 47.619 18.85 12.25 40.69 3.02
96 97 4.958581 TCTTATGATCTGGACTCAGCTGAA 59.041 41.667 18.85 1.32 40.69 3.02
97 98 4.540715 TCTTATGATCTGGACTCAGCTGA 58.459 43.478 17.19 17.19 40.69 4.26
98 99 4.933505 TCTTATGATCTGGACTCAGCTG 57.066 45.455 7.63 7.63 40.69 4.24
99 100 6.211184 CCTATTCTTATGATCTGGACTCAGCT 59.789 42.308 0.00 0.00 40.69 4.24
100 101 6.397272 CCTATTCTTATGATCTGGACTCAGC 58.603 44.000 0.00 0.00 40.69 4.26
101 102 6.014755 TGCCTATTCTTATGATCTGGACTCAG 60.015 42.308 0.00 0.00 42.21 3.35
102 103 5.840693 TGCCTATTCTTATGATCTGGACTCA 59.159 40.000 0.00 0.00 0.00 3.41
103 104 6.352016 TGCCTATTCTTATGATCTGGACTC 57.648 41.667 0.00 0.00 0.00 3.36
104 105 6.753913 TTGCCTATTCTTATGATCTGGACT 57.246 37.500 0.00 0.00 0.00 3.85
105 106 6.939163 ACATTGCCTATTCTTATGATCTGGAC 59.061 38.462 0.00 0.00 0.00 4.02
106 107 7.083062 ACATTGCCTATTCTTATGATCTGGA 57.917 36.000 0.00 0.00 0.00 3.86
107 108 6.373774 GGACATTGCCTATTCTTATGATCTGG 59.626 42.308 0.00 0.00 0.00 3.86
108 109 7.166851 AGGACATTGCCTATTCTTATGATCTG 58.833 38.462 0.00 0.00 36.22 2.90
109 110 7.327064 AGGACATTGCCTATTCTTATGATCT 57.673 36.000 0.00 0.00 36.22 2.75
121 122 6.841601 AGCTTGAATAATAGGACATTGCCTA 58.158 36.000 8.63 8.63 44.23 3.93
122 123 5.699143 AGCTTGAATAATAGGACATTGCCT 58.301 37.500 5.23 5.23 42.15 4.75
123 124 6.396829 AAGCTTGAATAATAGGACATTGCC 57.603 37.500 0.00 0.00 0.00 4.52
124 125 7.221452 CACAAAGCTTGAATAATAGGACATTGC 59.779 37.037 0.00 0.00 0.00 3.56
125 126 8.246180 ACACAAAGCTTGAATAATAGGACATTG 58.754 33.333 0.00 0.00 0.00 2.82
126 127 8.353423 ACACAAAGCTTGAATAATAGGACATT 57.647 30.769 0.00 0.00 0.00 2.71
127 128 7.831193 AGACACAAAGCTTGAATAATAGGACAT 59.169 33.333 0.00 0.00 0.00 3.06
128 129 7.168219 AGACACAAAGCTTGAATAATAGGACA 58.832 34.615 0.00 0.00 0.00 4.02
129 130 7.617041 AGACACAAAGCTTGAATAATAGGAC 57.383 36.000 0.00 0.00 0.00 3.85
130 131 7.769044 GGTAGACACAAAGCTTGAATAATAGGA 59.231 37.037 0.00 0.00 0.00 2.94
131 132 7.012421 GGGTAGACACAAAGCTTGAATAATAGG 59.988 40.741 0.00 0.00 0.00 2.57
132 133 7.770897 AGGGTAGACACAAAGCTTGAATAATAG 59.229 37.037 0.00 0.00 0.00 1.73
133 134 7.630082 AGGGTAGACACAAAGCTTGAATAATA 58.370 34.615 0.00 0.00 0.00 0.98
134 135 6.485171 AGGGTAGACACAAAGCTTGAATAAT 58.515 36.000 0.00 0.00 0.00 1.28
135 136 5.876357 AGGGTAGACACAAAGCTTGAATAA 58.124 37.500 0.00 0.00 0.00 1.40
136 137 5.499004 AGGGTAGACACAAAGCTTGAATA 57.501 39.130 0.00 0.00 0.00 1.75
137 138 4.373156 AGGGTAGACACAAAGCTTGAAT 57.627 40.909 0.00 0.00 0.00 2.57
138 139 3.857157 AGGGTAGACACAAAGCTTGAA 57.143 42.857 0.00 0.00 0.00 2.69
139 140 3.857157 AAGGGTAGACACAAAGCTTGA 57.143 42.857 0.00 0.00 0.00 3.02
140 141 3.550842 GCAAAGGGTAGACACAAAGCTTG 60.551 47.826 0.00 0.00 0.00 4.01
141 142 2.623416 GCAAAGGGTAGACACAAAGCTT 59.377 45.455 0.00 0.00 0.00 3.74
142 143 2.230660 GCAAAGGGTAGACACAAAGCT 58.769 47.619 0.00 0.00 0.00 3.74
143 144 1.953686 TGCAAAGGGTAGACACAAAGC 59.046 47.619 0.00 0.00 0.00 3.51
193 195 0.243095 GGTACCTCAGCGACGTCTTT 59.757 55.000 14.70 0.00 0.00 2.52
210 212 3.218974 CCCTGACACGTATAGGGGT 57.781 57.895 18.53 0.00 46.05 4.95
216 218 1.610554 CCCGGAACCCTGACACGTAT 61.611 60.000 0.73 0.00 0.00 3.06
218 220 3.622826 CCCGGAACCCTGACACGT 61.623 66.667 0.73 0.00 0.00 4.49
264 266 0.525668 GACGCTAAGCTTCGCTGCTA 60.526 55.000 19.44 0.00 43.24 3.49
274 276 1.128136 GAAGGGAAAACGACGCTAAGC 59.872 52.381 0.00 0.00 0.00 3.09
295 297 4.351938 TCCACGACAACGCCCTCG 62.352 66.667 0.00 0.00 43.96 4.63
301 303 0.316204 ACCTAAGGTCCACGACAACG 59.684 55.000 0.00 0.00 45.75 4.10
335 337 6.038985 ACGAAGATCTGAGTACAATGTCATG 58.961 40.000 0.00 0.00 0.00 3.07
336 338 6.214191 ACGAAGATCTGAGTACAATGTCAT 57.786 37.500 0.00 0.00 0.00 3.06
337 339 5.644977 ACGAAGATCTGAGTACAATGTCA 57.355 39.130 0.00 0.00 0.00 3.58
351 353 6.969828 ACCAAAAGAGAACATACGAAGATC 57.030 37.500 0.00 0.00 0.00 2.75
358 360 6.098017 ACTACGCTACCAAAAGAGAACATAC 58.902 40.000 0.00 0.00 0.00 2.39
359 361 6.276832 ACTACGCTACCAAAAGAGAACATA 57.723 37.500 0.00 0.00 0.00 2.29
360 362 5.148651 ACTACGCTACCAAAAGAGAACAT 57.851 39.130 0.00 0.00 0.00 2.71
388 390 4.224594 AGGATAATCGGATCATGCATGAGT 59.775 41.667 31.36 20.27 40.64 3.41
392 395 3.371273 CCCAGGATAATCGGATCATGCAT 60.371 47.826 0.00 0.00 36.52 3.96
403 406 5.440610 ACAACAACTGATCCCAGGATAATC 58.559 41.667 0.00 0.00 44.60 1.75
404 407 5.456921 ACAACAACTGATCCCAGGATAAT 57.543 39.130 0.00 0.00 44.60 1.28
416 419 4.222145 GGGTAGTCCTCATACAACAACTGA 59.778 45.833 0.00 0.00 0.00 3.41
419 422 3.262405 TGGGGTAGTCCTCATACAACAAC 59.738 47.826 0.00 0.00 39.64 3.32
430 433 1.203440 ACAAGGTGATGGGGTAGTCCT 60.203 52.381 0.00 0.00 35.33 3.85
442 445 2.555325 ACAGTCGAACGATACAAGGTGA 59.445 45.455 0.00 0.00 0.00 4.02
449 452 4.913924 ACAAAGTACACAGTCGAACGATAC 59.086 41.667 0.00 0.00 0.00 2.24
459 462 3.372822 CACAACCGAACAAAGTACACAGT 59.627 43.478 0.00 0.00 0.00 3.55
461 464 2.678836 CCACAACCGAACAAAGTACACA 59.321 45.455 0.00 0.00 0.00 3.72
520 523 7.307930 CGCCATATATTGCAACTCATAAACAGA 60.308 37.037 0.00 0.00 0.00 3.41
556 560 7.121315 GTCACCTTAAGTTTGGAGCATAAGATT 59.879 37.037 0.97 0.00 0.00 2.40
598 602 9.490663 CTGAAACGCCTAAATATACTTTTTGAG 57.509 33.333 0.00 0.00 0.00 3.02
724 728 6.475504 ACACTATTCACATCTGGATTTGTCA 58.524 36.000 0.00 0.00 0.00 3.58
780 815 8.972349 GCAAAAAGTTCAAACCAAAATTCAAAA 58.028 25.926 0.00 0.00 0.00 2.44
783 818 6.616017 GGCAAAAAGTTCAAACCAAAATTCA 58.384 32.000 0.00 0.00 0.00 2.57
888 1041 0.776810 TCCCATGCTCCACTTTTCCA 59.223 50.000 0.00 0.00 0.00 3.53
961 1150 0.937699 GGTCGGCAAAGAAAAACGGC 60.938 55.000 0.00 0.00 0.00 5.68
1007 1199 0.451783 CGGGCCCGAGAAAAGAAATG 59.548 55.000 41.82 3.72 42.83 2.32
1035 1227 2.282391 TCGGTCGGAACTCGGGAA 60.282 61.111 0.00 0.00 39.77 3.97
1295 1495 2.203938 TTCAGGGGAGCGGACCTT 60.204 61.111 0.00 0.00 34.05 3.50
1343 1544 0.821711 CAAACAGGGAGCCCAACGAA 60.822 55.000 8.53 0.00 38.92 3.85
1349 1550 1.075659 AGAAGCAAACAGGGAGCCC 59.924 57.895 0.00 0.00 0.00 5.19
1352 1553 0.251077 AGGCAGAAGCAAACAGGGAG 60.251 55.000 0.00 0.00 44.61 4.30
1355 1556 1.288127 GCAGGCAGAAGCAAACAGG 59.712 57.895 0.00 0.00 44.61 4.00
1356 1557 1.288127 GGCAGGCAGAAGCAAACAG 59.712 57.895 0.00 0.00 44.61 3.16
1413 1614 1.383803 AGGGATGTCTCCTCCTGCC 60.384 63.158 0.00 0.00 41.74 4.85
1415 1616 1.694133 GGCAGGGATGTCTCCTCCTG 61.694 65.000 0.00 0.00 46.93 3.86
1575 1784 4.941263 TCCCCAATTAGTTCGAGATTGTTG 59.059 41.667 10.13 4.46 0.00 3.33
1576 1785 5.174037 TCCCCAATTAGTTCGAGATTGTT 57.826 39.130 10.13 0.00 0.00 2.83
1579 1788 4.202472 GGGATCCCCAATTAGTTCGAGATT 60.202 45.833 21.42 0.00 44.65 2.40
1677 1919 5.529430 CAGGTTAAACCACTCACAATGTACA 59.471 40.000 0.00 0.00 41.95 2.90
1678 1920 5.529800 ACAGGTTAAACCACTCACAATGTAC 59.470 40.000 0.00 0.00 41.95 2.90
1681 1923 4.578516 TGACAGGTTAAACCACTCACAATG 59.421 41.667 0.00 0.00 41.95 2.82
1710 1952 4.443457 GGCTAACATACCAGATTCAGAGCA 60.443 45.833 0.00 0.00 0.00 4.26
1742 1984 3.391506 TGTGAGTTGTGATCCAGTCAG 57.608 47.619 0.00 0.00 37.56 3.51
1746 1988 2.430465 CCCTTGTGAGTTGTGATCCAG 58.570 52.381 0.00 0.00 0.00 3.86
1768 2085 3.073650 AGGCAGAGAAACTGGAGAAATGT 59.926 43.478 0.00 0.00 45.82 2.71
1772 2090 4.593206 TCTTTAGGCAGAGAAACTGGAGAA 59.407 41.667 0.00 0.00 45.82 2.87
1775 2093 5.721960 ACTATCTTTAGGCAGAGAAACTGGA 59.278 40.000 0.00 0.00 45.82 3.86
1776 2094 5.814705 CACTATCTTTAGGCAGAGAAACTGG 59.185 44.000 0.00 0.00 45.82 4.00
1788 2106 6.488006 ACCATATTGCAAGCACTATCTTTAGG 59.512 38.462 4.94 3.89 0.00 2.69
1790 2108 7.880160 AACCATATTGCAAGCACTATCTTTA 57.120 32.000 4.94 0.00 0.00 1.85
1824 2142 7.770366 TGGTGTTAGATAGAAGTAGTGTGAA 57.230 36.000 0.00 0.00 0.00 3.18
1836 2154 9.079833 CAATGCATTTCTTTTGGTGTTAGATAG 57.920 33.333 9.83 0.00 0.00 2.08
1837 2155 8.801299 TCAATGCATTTCTTTTGGTGTTAGATA 58.199 29.630 9.83 0.00 0.00 1.98
1853 2179 6.005198 ACATTTGGTTGGAATCAATGCATTT 58.995 32.000 9.83 0.00 35.10 2.32
1862 2188 4.096382 AGCGTATGACATTTGGTTGGAATC 59.904 41.667 0.00 0.00 0.00 2.52
1878 2205 2.355132 AGTTCGTCAGTAGGAGCGTATG 59.645 50.000 0.00 0.00 0.00 2.39
1879 2206 2.355132 CAGTTCGTCAGTAGGAGCGTAT 59.645 50.000 0.00 0.00 0.00 3.06
1880 2207 1.736126 CAGTTCGTCAGTAGGAGCGTA 59.264 52.381 0.00 0.00 0.00 4.42
1881 2208 0.522180 CAGTTCGTCAGTAGGAGCGT 59.478 55.000 0.00 0.00 0.00 5.07
1882 2209 0.803117 TCAGTTCGTCAGTAGGAGCG 59.197 55.000 0.00 0.00 0.00 5.03
1883 2210 1.813786 AGTCAGTTCGTCAGTAGGAGC 59.186 52.381 0.00 0.00 0.00 4.70
1884 2211 3.253677 ACAAGTCAGTTCGTCAGTAGGAG 59.746 47.826 0.00 0.00 0.00 3.69
1885 2212 3.004419 CACAAGTCAGTTCGTCAGTAGGA 59.996 47.826 0.00 0.00 0.00 2.94
1888 2215 4.097437 AGTTCACAAGTCAGTTCGTCAGTA 59.903 41.667 0.00 0.00 0.00 2.74
1894 2221 2.797156 CCTCAGTTCACAAGTCAGTTCG 59.203 50.000 0.00 0.00 0.00 3.95
1896 2223 2.158755 CCCCTCAGTTCACAAGTCAGTT 60.159 50.000 0.00 0.00 0.00 3.16
1903 2230 2.224769 GGATTGTCCCCTCAGTTCACAA 60.225 50.000 0.00 0.00 0.00 3.33
1953 2281 9.378551 TGCGATACTAGTTTATTTGTCAAGAAT 57.621 29.630 0.00 0.00 0.00 2.40
1955 2283 8.942338 ATGCGATACTAGTTTATTTGTCAAGA 57.058 30.769 0.00 0.00 0.00 3.02
1958 2286 8.710835 TGAATGCGATACTAGTTTATTTGTCA 57.289 30.769 0.00 0.00 0.00 3.58
1960 2288 8.942338 TCTGAATGCGATACTAGTTTATTTGT 57.058 30.769 0.00 0.00 0.00 2.83
2003 2332 4.631377 CAGTTTTATGATGCGAGGAAGACA 59.369 41.667 0.00 0.00 0.00 3.41
2011 2340 4.094294 GGTACAAGCAGTTTTATGATGCGA 59.906 41.667 0.00 0.00 44.64 5.10
2013 2342 5.309323 TGGTACAAGCAGTTTTATGATGC 57.691 39.130 0.00 0.00 40.29 3.91
2014 2343 5.124457 AGCTGGTACAAGCAGTTTTATGATG 59.876 40.000 24.16 0.00 44.96 3.07
2027 2356 7.201530 GCAGTTAACACTATTAGCTGGTACAAG 60.202 40.741 8.61 0.00 38.70 3.16
2041 2373 9.509855 CACACAAAATTTAAGCAGTTAACACTA 57.490 29.630 8.61 0.00 0.00 2.74
2073 2405 2.636768 GCACATTGCAGGAAGGTAAC 57.363 50.000 0.00 0.00 44.26 2.50
2110 2442 3.681313 GCCTTTTTGCACCAAAGAAGGAA 60.681 43.478 21.82 4.72 40.14 3.36
2116 2448 2.354259 TGTTGCCTTTTTGCACCAAAG 58.646 42.857 9.70 9.70 41.88 2.77
2118 2450 2.286872 CATGTTGCCTTTTTGCACCAA 58.713 42.857 0.00 0.00 41.88 3.67
2121 2453 4.570369 ACTAAACATGTTGCCTTTTTGCAC 59.430 37.500 12.82 0.00 41.88 4.57
2131 2463 2.293122 TCTGCCACACTAAACATGTTGC 59.707 45.455 12.82 9.74 38.77 4.17
2132 2464 4.771590 ATCTGCCACACTAAACATGTTG 57.228 40.909 12.82 2.41 0.00 3.33
2136 2468 5.683876 AGACTATCTGCCACACTAAACAT 57.316 39.130 0.00 0.00 0.00 2.71
2142 2474 6.054860 ACAATTTAGACTATCTGCCACACT 57.945 37.500 0.00 0.00 0.00 3.55
2317 2650 0.593128 CAGGTTCAACTTTGAGGCCG 59.407 55.000 0.00 0.00 38.61 6.13
2354 2687 5.163602 ACAAAAGGTTCTTACGTTTGATGCA 60.164 36.000 9.99 0.00 40.41 3.96
2380 2713 5.645497 CAGAACGATGAAAGGAGAAAGGAAT 59.355 40.000 0.00 0.00 0.00 3.01
2427 2760 3.703556 GCTGAGAGGCCTATATGAGCATA 59.296 47.826 4.42 0.00 0.00 3.14
2428 2761 2.500910 GCTGAGAGGCCTATATGAGCAT 59.499 50.000 4.42 0.00 0.00 3.79
2429 2762 1.898472 GCTGAGAGGCCTATATGAGCA 59.102 52.381 4.42 0.00 0.00 4.26
3187 3523 3.118261 TGATGATAAGAGGTGACAAGGGC 60.118 47.826 0.00 0.00 0.00 5.19
3209 3545 9.507329 AATGTACTTCAAGTTTGTCATCAGTAT 57.493 29.630 0.00 0.00 0.00 2.12
3303 3639 4.344679 ACCAATGCAACTTTCTGAATTCCA 59.655 37.500 2.27 0.00 0.00 3.53
3445 3781 2.089980 CCAACTTGCTTCATCCTCCAG 58.910 52.381 0.00 0.00 0.00 3.86
3528 3864 5.936956 AGCTTTGTAATCTTCTCTTGTGGAG 59.063 40.000 0.00 0.00 43.12 3.86
3531 3867 5.702670 TGGAGCTTTGTAATCTTCTCTTGTG 59.297 40.000 0.00 0.00 0.00 3.33
3589 3925 4.033684 GCATGACTTCTTTCAATCATCGC 58.966 43.478 0.00 0.00 29.25 4.58
4046 4382 1.211212 CAGGAACCTGATCATCTGGCA 59.789 52.381 14.94 0.00 46.30 4.92
4047 4383 1.487976 TCAGGAACCTGATCATCTGGC 59.512 52.381 18.17 0.00 46.80 4.85
4095 4431 0.108804 CTTCTAGGCTGGCGACGAAA 60.109 55.000 0.00 0.00 0.00 3.46
4372 4708 0.680280 TACTGGGCGTCTGTCTCTCC 60.680 60.000 0.00 0.00 0.00 3.71
4413 4749 4.367023 TTGCCGTCGTCCTTCCCG 62.367 66.667 0.00 0.00 0.00 5.14
4506 4842 5.707242 TCTACTAGCAAGATTATCCACCG 57.293 43.478 0.00 0.00 0.00 4.94
4521 4857 4.159857 GTCTCAGCAACGTGTTCTACTAG 58.840 47.826 0.00 0.00 0.00 2.57
4527 4863 0.861837 CAGGTCTCAGCAACGTGTTC 59.138 55.000 0.00 0.00 0.00 3.18
4562 4905 1.396301 CACGGCAAGATCAGCTTCTTC 59.604 52.381 9.60 0.00 33.69 2.87
4635 4978 1.573108 AGTCGGTCATCAGGGTTGAT 58.427 50.000 0.00 0.00 44.87 2.57
4636 4979 1.001974 CAAGTCGGTCATCAGGGTTGA 59.998 52.381 0.00 0.00 37.81 3.18
4637 4980 1.001974 TCAAGTCGGTCATCAGGGTTG 59.998 52.381 0.00 0.00 0.00 3.77
4638 4981 1.002087 GTCAAGTCGGTCATCAGGGTT 59.998 52.381 0.00 0.00 0.00 4.11
4668 5011 5.399858 CATCTTTTTCTGCAGAAGATGGTG 58.600 41.667 31.82 27.75 46.54 4.17
4692 5043 5.288472 GGAGTTTTGCTTTAGTTTGTGTGTG 59.712 40.000 0.00 0.00 0.00 3.82
4698 5049 4.142049 TGGGTGGAGTTTTGCTTTAGTTTG 60.142 41.667 0.00 0.00 0.00 2.93
4700 5051 3.383505 GTGGGTGGAGTTTTGCTTTAGTT 59.616 43.478 0.00 0.00 0.00 2.24
4701 5052 2.956333 GTGGGTGGAGTTTTGCTTTAGT 59.044 45.455 0.00 0.00 0.00 2.24
4702 5053 2.031157 CGTGGGTGGAGTTTTGCTTTAG 60.031 50.000 0.00 0.00 0.00 1.85
4703 5054 1.950909 CGTGGGTGGAGTTTTGCTTTA 59.049 47.619 0.00 0.00 0.00 1.85
4705 5056 1.106944 CCGTGGGTGGAGTTTTGCTT 61.107 55.000 0.00 0.00 0.00 3.91
4706 5057 1.528309 CCGTGGGTGGAGTTTTGCT 60.528 57.895 0.00 0.00 0.00 3.91
4707 5058 3.039134 CCGTGGGTGGAGTTTTGC 58.961 61.111 0.00 0.00 0.00 3.68
4708 5059 1.515521 GAGCCGTGGGTGGAGTTTTG 61.516 60.000 0.00 0.00 0.00 2.44
4709 5060 1.228154 GAGCCGTGGGTGGAGTTTT 60.228 57.895 0.00 0.00 0.00 2.43
4726 5077 2.425539 TGATCTTGAAATGCAGCACGA 58.574 42.857 0.00 0.00 0.00 4.35
4823 5190 3.387699 TGTCTCCAGTTTGTCACAGATGA 59.612 43.478 0.00 0.00 0.00 2.92
4837 5204 2.476619 GTCGTGTTGTCATTGTCTCCAG 59.523 50.000 0.00 0.00 0.00 3.86
4844 5211 1.128507 CATCCCGTCGTGTTGTCATTG 59.871 52.381 0.00 0.00 0.00 2.82
4859 5226 0.976641 TGGCGGAGATATGTCATCCC 59.023 55.000 1.87 0.00 0.00 3.85
4925 5293 1.676014 GCGGTGGTGCTTAGATTGACT 60.676 52.381 0.00 0.00 0.00 3.41
5030 5431 2.093921 GTCCTACAGGGCTCTGACTTTC 60.094 54.545 23.49 3.83 43.49 2.62
5140 5548 0.833287 CTACCCACAGGATGACAGGG 59.167 60.000 0.00 0.00 46.34 4.45
5151 5559 2.976185 TGATTGAACTGGTCTACCCACA 59.024 45.455 0.00 0.00 38.72 4.17
5217 5625 5.211454 TGCATTTTATATGCCGATTCGTTG 58.789 37.500 5.20 0.00 43.94 4.10
5309 5718 5.785423 TGACCTCTATTTTCCCCATATCGAT 59.215 40.000 2.16 2.16 0.00 3.59
5316 5725 4.044065 ACACATTGACCTCTATTTTCCCCA 59.956 41.667 0.00 0.00 0.00 4.96
5321 5730 7.122650 CCCATTACACACATTGACCTCTATTTT 59.877 37.037 0.00 0.00 0.00 1.82
5348 5758 2.592574 GCCTGTGCACAGCTCACA 60.593 61.111 36.38 6.02 42.47 3.58
5372 5783 0.937304 CGCCATTTGGATACCGTCAG 59.063 55.000 0.00 0.00 37.39 3.51
5415 5826 2.990941 TCAAGTGACACTTCGTACGTC 58.009 47.619 18.02 5.49 36.03 4.34
5451 5862 9.563898 TTGACTACTAAGTATTTGTACATGTCG 57.436 33.333 0.00 0.00 34.38 4.35
5467 5878 8.904834 GTGACATCTCTTAGGATTGACTACTAA 58.095 37.037 0.00 0.00 0.00 2.24
5596 6007 0.039911 ACAGAGAGGGCGGTAGAAGT 59.960 55.000 0.00 0.00 0.00 3.01
5628 6042 5.844301 TTTTCGTAACGGTCCTAATCAAC 57.156 39.130 0.00 0.00 0.00 3.18
5634 6048 6.037720 TCGTACATATTTTCGTAACGGTCCTA 59.962 38.462 0.00 0.00 0.00 2.94
5682 6098 9.227777 ACTACTCATACATTTTTGAAACCCTAC 57.772 33.333 0.00 0.00 0.00 3.18
5704 6120 8.530804 TTAGGAACAGAGGGAGTATTTACTAC 57.469 38.462 0.00 0.00 36.50 2.73
5713 6129 7.014422 CGTCTTATATTTAGGAACAGAGGGAGT 59.986 40.741 0.00 0.00 0.00 3.85
5714 6130 7.014422 ACGTCTTATATTTAGGAACAGAGGGAG 59.986 40.741 0.00 0.00 0.00 4.30
5715 6131 6.837568 ACGTCTTATATTTAGGAACAGAGGGA 59.162 38.462 0.00 0.00 0.00 4.20
5716 6132 7.052142 ACGTCTTATATTTAGGAACAGAGGG 57.948 40.000 0.00 0.00 0.00 4.30
5717 6133 8.943909 AAACGTCTTATATTTAGGAACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
5719 6135 9.158233 CCAAAACGTCTTATATTTAGGAACAGA 57.842 33.333 0.00 0.00 0.00 3.41
5720 6136 7.908601 GCCAAAACGTCTTATATTTAGGAACAG 59.091 37.037 0.00 0.00 0.00 3.16
5721 6137 7.390996 TGCCAAAACGTCTTATATTTAGGAACA 59.609 33.333 0.00 0.00 0.00 3.18
5722 6138 7.754625 TGCCAAAACGTCTTATATTTAGGAAC 58.245 34.615 0.00 0.00 0.00 3.62
5723 6139 7.066525 CCTGCCAAAACGTCTTATATTTAGGAA 59.933 37.037 0.00 0.00 0.00 3.36
5724 6140 6.540914 CCTGCCAAAACGTCTTATATTTAGGA 59.459 38.462 0.00 0.00 0.00 2.94
5725 6141 6.540914 TCCTGCCAAAACGTCTTATATTTAGG 59.459 38.462 0.00 0.00 0.00 2.69
5726 6142 7.548196 TCCTGCCAAAACGTCTTATATTTAG 57.452 36.000 0.00 0.00 0.00 1.85
5727 6143 7.413219 CGTTCCTGCCAAAACGTCTTATATTTA 60.413 37.037 0.00 0.00 42.37 1.40
5728 6144 6.617879 GTTCCTGCCAAAACGTCTTATATTT 58.382 36.000 0.00 0.00 0.00 1.40
5729 6145 5.163794 CGTTCCTGCCAAAACGTCTTATATT 60.164 40.000 0.00 0.00 42.37 1.28
5730 6146 4.331717 CGTTCCTGCCAAAACGTCTTATAT 59.668 41.667 0.00 0.00 42.37 0.86
5731 6147 3.680937 CGTTCCTGCCAAAACGTCTTATA 59.319 43.478 0.00 0.00 42.37 0.98
5732 6148 2.482721 CGTTCCTGCCAAAACGTCTTAT 59.517 45.455 0.00 0.00 42.37 1.73
5740 6156 0.183971 TCCCTTCGTTCCTGCCAAAA 59.816 50.000 0.00 0.00 0.00 2.44
5788 6204 4.415881 TTTCACTAACCTCTGTTCTGCA 57.584 40.909 0.00 0.00 35.87 4.41
5807 6223 5.983118 GGATTCCACAAAATTCTCGTGTTTT 59.017 36.000 0.00 0.00 0.00 2.43
5825 6241 7.687941 TCTTTCAGATTAAACACTGGATTCC 57.312 36.000 0.00 0.00 35.20 3.01
5845 6261 9.965824 ATGATTGAAGTGTTTTTCGTATTCTTT 57.034 25.926 0.00 0.00 0.00 2.52
5914 6331 8.565416 ACAAGGCTTAGATAACAACAAACTAAC 58.435 33.333 0.00 0.00 0.00 2.34
5997 6426 7.817962 ACGTACTCTTGTAAATGCTCTTTGTAT 59.182 33.333 0.00 0.00 0.00 2.29
6000 6429 6.467723 ACGTACTCTTGTAAATGCTCTTTG 57.532 37.500 0.00 0.00 0.00 2.77
6021 6450 9.318041 CTATTTTCTTGCGATGGATATTTTACG 57.682 33.333 0.00 0.00 0.00 3.18
6030 6459 5.582269 CAGACTTCTATTTTCTTGCGATGGA 59.418 40.000 0.00 0.00 0.00 3.41
6037 6466 8.449397 CAATCCACTCAGACTTCTATTTTCTTG 58.551 37.037 0.00 0.00 0.00 3.02
6039 6468 7.684529 ACAATCCACTCAGACTTCTATTTTCT 58.315 34.615 0.00 0.00 0.00 2.52
6040 6469 7.913674 ACAATCCACTCAGACTTCTATTTTC 57.086 36.000 0.00 0.00 0.00 2.29
6068 6497 8.776376 TTTGCTTTGAGTTTCAGAAGAAAAAT 57.224 26.923 0.00 0.00 44.75 1.82
6077 6506 7.816945 TTTTCTTCTTTGCTTTGAGTTTCAG 57.183 32.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.