Multiple sequence alignment - TraesCS2D01G097500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G097500 chr2D 100.000 3796 0 0 1 3796 49874922 49878717 0.000000e+00 7011.0
1 TraesCS2D01G097500 chr2D 85.106 94 12 1 1795 1886 567583183 567583276 1.120000e-15 95.3
2 TraesCS2D01G097500 chr2B 90.986 1764 73 34 2005 3722 77169880 77171603 0.000000e+00 2298.0
3 TraesCS2D01G097500 chr2B 86.150 917 74 36 730 1630 77168707 77169586 0.000000e+00 941.0
4 TraesCS2D01G097500 chr2B 90.801 337 20 7 1 331 77167660 77167991 1.250000e-119 440.0
5 TraesCS2D01G097500 chr2B 83.125 320 34 12 361 674 77168184 77168489 1.340000e-69 274.0
6 TraesCS2D01G097500 chr2B 88.489 139 12 2 1658 1792 77169668 77169806 8.440000e-37 165.0
7 TraesCS2D01G097500 chr2B 90.805 87 8 0 2038 2124 77169749 77169835 2.400000e-22 117.0
8 TraesCS2D01G097500 chr2B 93.103 58 3 1 1735 1792 77169833 77169889 2.430000e-12 84.2
9 TraesCS2D01G097500 chr2A 91.107 1698 110 25 2055 3722 51583163 51584849 0.000000e+00 2261.0
10 TraesCS2D01G097500 chr2A 83.739 1150 95 53 532 1662 51581902 51582978 0.000000e+00 1003.0
11 TraesCS2D01G097500 chr4D 92.328 378 29 0 2419 2796 312800701 312800324 4.310000e-149 538.0
12 TraesCS2D01G097500 chr4D 91.463 82 7 0 1000 1081 312801843 312801762 3.100000e-21 113.0
13 TraesCS2D01G097500 chr4D 91.045 67 3 2 1885 1951 275757601 275757664 1.880000e-13 87.9
14 TraesCS2D01G097500 chr4A 90.741 378 35 0 2419 2796 163818733 163819110 4.380000e-139 505.0
15 TraesCS2D01G097500 chr4A 92.500 80 6 0 999 1078 163817141 163817220 8.620000e-22 115.0
16 TraesCS2D01G097500 chr4A 91.045 67 5 1 1885 1951 210167711 210167646 5.220000e-14 89.8
17 TraesCS2D01G097500 chr1B 89.153 378 41 0 2420 2797 543498119 543497742 4.440000e-129 472.0
18 TraesCS2D01G097500 chr1B 92.405 79 6 0 1000 1078 543500052 543499974 3.100000e-21 113.0
19 TraesCS2D01G097500 chr1D 88.889 378 42 0 2420 2797 404138644 404138267 2.070000e-127 466.0
20 TraesCS2D01G097500 chr1D 97.619 84 2 0 3713 3796 296532101 296532018 1.100000e-30 145.0
21 TraesCS2D01G097500 chr1D 93.671 79 5 0 1000 1078 404139953 404139875 6.660000e-23 119.0
22 TraesCS2D01G097500 chr1A 88.624 378 43 0 2420 2797 499785376 499784999 9.610000e-126 460.0
23 TraesCS2D01G097500 chr1A 100.000 78 0 0 3719 3796 272648115 272648038 1.100000e-30 145.0
24 TraesCS2D01G097500 chr1A 93.151 73 3 2 1885 1957 381297406 381297336 5.190000e-19 106.0
25 TraesCS2D01G097500 chr1A 93.056 72 3 2 1884 1954 40230910 40230840 1.870000e-18 104.0
26 TraesCS2D01G097500 chr1A 96.226 53 2 0 1000 1052 499787110 499787058 1.880000e-13 87.9
27 TraesCS2D01G097500 chr3D 87.566 378 47 0 2420 2797 441147394 441147771 4.500000e-119 438.0
28 TraesCS2D01G097500 chr3D 96.203 79 3 0 1000 1078 175408285 175408207 3.080000e-26 130.0
29 TraesCS2D01G097500 chr3D 87.156 109 7 5 996 1102 185790119 185790222 2.400000e-22 117.0
30 TraesCS2D01G097500 chr3D 85.321 109 14 2 1000 1107 441145020 441145127 1.110000e-20 111.0
31 TraesCS2D01G097500 chr3A 87.302 378 48 0 2420 2797 581274016 581274393 2.090000e-117 433.0
32 TraesCS2D01G097500 chr3A 97.468 79 2 0 1000 1078 215482210 215482132 6.610000e-28 135.0
33 TraesCS2D01G097500 chr3A 92.632 95 4 2 3705 3796 7276124 7276030 2.380000e-27 134.0
34 TraesCS2D01G097500 chr7D 100.000 80 0 0 3717 3796 570656714 570656793 8.500000e-32 148.0
35 TraesCS2D01G097500 chr7D 87.838 74 5 3 1885 1954 188809845 188809772 2.430000e-12 84.2
36 TraesCS2D01G097500 chrUn 100.000 78 0 0 3719 3796 325927181 325927258 1.100000e-30 145.0
37 TraesCS2D01G097500 chr6A 100.000 78 0 0 3719 3796 1841217 1841140 1.100000e-30 145.0
38 TraesCS2D01G097500 chr6A 100.000 78 0 0 3719 3796 481107614 481107537 1.100000e-30 145.0
39 TraesCS2D01G097500 chr6A 90.141 71 4 1 1880 1950 189545139 189545072 5.220000e-14 89.8
40 TraesCS2D01G097500 chr5A 100.000 78 0 0 3719 3796 272591233 272591156 1.100000e-30 145.0
41 TraesCS2D01G097500 chr5B 96.512 86 1 2 3712 3796 532184505 532184589 1.420000e-29 141.0
42 TraesCS2D01G097500 chr5B 85.106 94 12 1 1795 1886 521367032 521367125 1.120000e-15 95.3
43 TraesCS2D01G097500 chr3B 97.468 79 2 0 1000 1078 254779960 254779882 6.610000e-28 135.0
44 TraesCS2D01G097500 chr3B 91.765 85 5 2 996 1078 266563870 266563954 2.400000e-22 117.0
45 TraesCS2D01G097500 chr4B 91.250 80 7 0 999 1078 390279514 390279593 4.010000e-20 110.0
46 TraesCS2D01G097500 chr4B 92.537 67 2 2 1885 1951 273246590 273246527 4.040000e-15 93.5
47 TraesCS2D01G097500 chr5D 90.000 70 5 2 1881 1950 512302176 512302109 5.220000e-14 89.8
48 TraesCS2D01G097500 chr7B 90.000 70 3 3 1885 1954 53250638 53250573 1.880000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G097500 chr2D 49874922 49878717 3795 False 7011.000000 7011 100.000000 1 3796 1 chr2D.!!$F1 3795
1 TraesCS2D01G097500 chr2B 77167660 77171603 3943 False 617.028571 2298 89.065571 1 3722 7 chr2B.!!$F1 3721
2 TraesCS2D01G097500 chr2A 51581902 51584849 2947 False 1632.000000 2261 87.423000 532 3722 2 chr2A.!!$F1 3190
3 TraesCS2D01G097500 chr4D 312800324 312801843 1519 True 325.500000 538 91.895500 1000 2796 2 chr4D.!!$R1 1796
4 TraesCS2D01G097500 chr4A 163817141 163819110 1969 False 310.000000 505 91.620500 999 2796 2 chr4A.!!$F1 1797
5 TraesCS2D01G097500 chr1B 543497742 543500052 2310 True 292.500000 472 90.779000 1000 2797 2 chr1B.!!$R1 1797
6 TraesCS2D01G097500 chr1D 404138267 404139953 1686 True 292.500000 466 91.280000 1000 2797 2 chr1D.!!$R2 1797
7 TraesCS2D01G097500 chr1A 499784999 499787110 2111 True 273.950000 460 92.425000 1000 2797 2 chr1A.!!$R4 1797
8 TraesCS2D01G097500 chr3D 441145020 441147771 2751 False 274.500000 438 86.443500 1000 2797 2 chr3D.!!$F2 1797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 179 0.037590 TTTGTGGTCCGATCCCCTTG 59.962 55.0 0.00 0.0 0.00 3.61 F
476 654 0.108138 CGAGGAGGGATCACACAACC 60.108 60.0 0.00 0.0 0.00 3.77 F
784 1135 0.252239 GAGGGGCAGTTTGGGGAATT 60.252 55.0 0.00 0.0 0.00 2.17 F
1815 4643 0.737804 TTGCTGTGCACACGATTGTT 59.262 45.0 17.42 0.0 38.71 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1864 0.321298 ACGAAATGGTCAACCCCGAG 60.321 55.0 0.00 0.00 34.29 4.63 R
1456 2006 0.511221 CACGGTCAACAATCACGACC 59.489 55.0 0.00 0.00 44.79 4.79 R
1878 4706 0.531200 GGACAGAGGGAGTACAACCG 59.469 60.0 0.00 0.00 0.00 4.44 R
3398 7806 0.035725 CTTCTCCTGCTCCATGTGCA 60.036 55.0 9.72 9.72 38.81 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 5.408604 AGAAGCCGTGTATTTGTTCTTACAG 59.591 40.000 0.00 0.00 35.28 2.74
93 95 2.758089 GCCACAATCGAGCAGCTGG 61.758 63.158 17.12 0.00 0.00 4.85
142 146 5.056894 AGATGAATGTTTGAGAAGCAAGC 57.943 39.130 0.00 0.00 37.87 4.01
157 161 7.280876 TGAGAAGCAAGCGAGAATACAATATTT 59.719 33.333 0.00 0.00 0.00 1.40
159 163 7.912250 AGAAGCAAGCGAGAATACAATATTTTG 59.088 33.333 0.00 0.00 38.86 2.44
164 168 7.016361 AGCGAGAATACAATATTTTGTGGTC 57.984 36.000 11.30 8.26 45.56 4.02
165 169 6.038271 AGCGAGAATACAATATTTTGTGGTCC 59.962 38.462 11.30 0.00 45.56 4.46
175 179 0.037590 TTTGTGGTCCGATCCCCTTG 59.962 55.000 0.00 0.00 0.00 3.61
191 195 4.581824 TCCCCTTGTACATATACACGTCTC 59.418 45.833 0.00 0.00 41.12 3.36
202 206 6.205076 ACATATACACGTCTCAGGCTAAGTAG 59.795 42.308 0.00 0.00 0.00 2.57
205 209 4.330250 ACACGTCTCAGGCTAAGTAGTAA 58.670 43.478 0.00 0.00 0.00 2.24
206 210 4.948621 ACACGTCTCAGGCTAAGTAGTAAT 59.051 41.667 0.00 0.00 0.00 1.89
207 211 6.118170 ACACGTCTCAGGCTAAGTAGTAATA 58.882 40.000 0.00 0.00 0.00 0.98
208 212 6.260493 ACACGTCTCAGGCTAAGTAGTAATAG 59.740 42.308 0.00 0.00 0.00 1.73
209 213 6.482641 CACGTCTCAGGCTAAGTAGTAATAGA 59.517 42.308 0.00 0.00 0.00 1.98
210 214 6.707161 ACGTCTCAGGCTAAGTAGTAATAGAG 59.293 42.308 0.00 0.00 0.00 2.43
211 215 6.347888 CGTCTCAGGCTAAGTAGTAATAGAGC 60.348 46.154 0.00 0.00 0.00 4.09
221 225 7.713734 AAGTAGTAATAGAGCCACTTACACA 57.286 36.000 0.00 0.00 0.00 3.72
222 226 7.098074 AGTAGTAATAGAGCCACTTACACAC 57.902 40.000 0.00 0.00 0.00 3.82
228 232 2.241880 GCCACTTACACACGTGCGT 61.242 57.895 17.22 15.70 0.00 5.24
244 248 2.157668 GTGCGTGTCCAACTTACTCATG 59.842 50.000 0.00 0.00 0.00 3.07
246 250 2.346803 CGTGTCCAACTTACTCATGGG 58.653 52.381 0.00 0.00 34.89 4.00
257 261 2.077687 ACTCATGGGCCAATCCATTC 57.922 50.000 11.89 0.00 44.55 2.67
296 300 1.750399 GTCCATTGCCGTGCTCCAT 60.750 57.895 0.00 0.00 0.00 3.41
297 301 1.451927 TCCATTGCCGTGCTCCATC 60.452 57.895 0.00 0.00 0.00 3.51
325 329 7.879070 TCTCTTTTTGAGATGTCCAATCTTTG 58.121 34.615 0.00 0.00 46.03 2.77
327 331 8.263734 CTCTTTTTGAGATGTCCAATCTTTGGC 61.264 40.741 1.27 0.00 46.68 4.52
333 337 4.819082 CCAATCTTTGGCGCCATG 57.181 55.556 33.25 24.62 45.17 3.66
335 339 1.519898 CAATCTTTGGCGCCATGGC 60.520 57.895 33.25 27.67 45.12 4.40
363 367 7.795047 ACCAAGACTACATCATAATGTCATCA 58.205 34.615 0.00 0.00 42.59 3.07
364 368 8.435187 ACCAAGACTACATCATAATGTCATCAT 58.565 33.333 0.00 0.00 42.59 2.45
365 369 9.933723 CCAAGACTACATCATAATGTCATCATA 57.066 33.333 0.00 0.00 42.59 2.15
373 377 8.737175 ACATCATAATGTCATCATAAATCCAGC 58.263 33.333 0.00 0.00 42.59 4.85
374 378 8.736244 CATCATAATGTCATCATAAATCCAGCA 58.264 33.333 0.00 0.00 33.49 4.41
382 560 7.504574 TGTCATCATAAATCCAGCATCTTTGAT 59.495 33.333 0.00 0.00 0.00 2.57
386 564 9.749340 ATCATAAATCCAGCATCTTTGATATCA 57.251 29.630 0.00 0.00 0.00 2.15
402 580 9.249457 CTTTGATATCAGTACACAATCATACGT 57.751 33.333 5.39 0.00 0.00 3.57
411 589 4.503910 ACACAATCATACGTACATGCAGT 58.496 39.130 0.00 0.00 0.00 4.40
412 590 4.329801 ACACAATCATACGTACATGCAGTG 59.670 41.667 0.00 5.93 32.66 3.66
414 592 4.329801 ACAATCATACGTACATGCAGTGTG 59.670 41.667 0.00 0.00 42.24 3.82
418 596 1.795768 ACGTACATGCAGTGTGGAAG 58.204 50.000 10.77 0.00 42.24 3.46
421 599 1.197721 GTACATGCAGTGTGGAAGCAC 59.802 52.381 10.77 0.00 42.24 4.40
422 600 0.466007 ACATGCAGTGTGGAAGCACA 60.466 50.000 0.00 0.00 41.60 4.57
423 601 0.240145 CATGCAGTGTGGAAGCACAG 59.760 55.000 0.00 0.00 41.60 3.66
425 603 0.467804 TGCAGTGTGGAAGCACAGTA 59.532 50.000 0.00 0.00 41.52 2.74
426 604 1.151668 GCAGTGTGGAAGCACAGTAG 58.848 55.000 0.00 0.00 41.52 2.57
428 606 1.344438 CAGTGTGGAAGCACAGTAGGA 59.656 52.381 0.00 0.00 41.52 2.94
430 608 2.143925 GTGTGGAAGCACAGTAGGAAC 58.856 52.381 0.00 0.00 39.07 3.62
436 614 3.557054 GGAAGCACAGTAGGAACACATGA 60.557 47.826 0.00 0.00 0.00 3.07
443 621 2.092323 GTAGGAACACATGAAAGGCCC 58.908 52.381 0.00 0.00 0.00 5.80
457 635 1.300853 GGCCCAAATGCACACACAC 60.301 57.895 0.00 0.00 0.00 3.82
462 640 0.943673 CAAATGCACACACACGAGGA 59.056 50.000 0.00 0.00 0.00 3.71
471 649 0.541998 ACACACGAGGAGGGATCACA 60.542 55.000 0.00 0.00 0.00 3.58
472 650 0.108615 CACACGAGGAGGGATCACAC 60.109 60.000 0.00 0.00 0.00 3.82
473 651 0.541998 ACACGAGGAGGGATCACACA 60.542 55.000 0.00 0.00 0.00 3.72
474 652 0.608130 CACGAGGAGGGATCACACAA 59.392 55.000 0.00 0.00 0.00 3.33
475 653 0.608640 ACGAGGAGGGATCACACAAC 59.391 55.000 0.00 0.00 0.00 3.32
476 654 0.108138 CGAGGAGGGATCACACAACC 60.108 60.000 0.00 0.00 0.00 3.77
478 656 1.561542 GAGGAGGGATCACACAACCAT 59.438 52.381 0.00 0.00 0.00 3.55
481 659 3.054361 AGGAGGGATCACACAACCATAAC 60.054 47.826 0.00 0.00 0.00 1.89
499 677 2.896854 CATGGGGATGCACGACCG 60.897 66.667 0.00 0.00 0.00 4.79
501 679 3.385749 ATGGGGATGCACGACCGAC 62.386 63.158 0.00 0.00 0.00 4.79
502 680 4.832608 GGGGATGCACGACCGACC 62.833 72.222 0.00 0.00 0.00 4.79
504 682 4.832608 GGATGCACGACCGACCCC 62.833 72.222 0.00 0.00 0.00 4.95
524 702 3.119602 CCCGAGTCAAGAGAAATACACGA 60.120 47.826 0.00 0.00 0.00 4.35
525 703 4.099120 CCGAGTCAAGAGAAATACACGAG 58.901 47.826 0.00 0.00 0.00 4.18
530 708 4.033358 GTCAAGAGAAATACACGAGGCATG 59.967 45.833 0.00 0.00 0.00 4.06
546 724 0.889638 CATGCCAGAGCCTAGCCATG 60.890 60.000 0.00 0.00 38.69 3.66
548 726 1.227793 GCCAGAGCCTAGCCATGAC 60.228 63.158 0.00 0.00 0.00 3.06
569 747 7.561021 TGACACAAGTTGCATTAGTTTTCTA 57.439 32.000 1.81 0.00 0.00 2.10
583 761 4.981812 AGTTTTCTACCCAAGTTAGGTGG 58.018 43.478 2.90 0.00 38.36 4.61
628 806 1.251527 CGTGCCTCTCACCACCTACT 61.252 60.000 0.00 0.00 42.69 2.57
629 807 1.848652 GTGCCTCTCACCACCTACTA 58.151 55.000 0.00 0.00 39.79 1.82
630 808 1.477295 GTGCCTCTCACCACCTACTAC 59.523 57.143 0.00 0.00 39.79 2.73
631 809 1.112950 GCCTCTCACCACCTACTACC 58.887 60.000 0.00 0.00 0.00 3.18
632 810 1.618888 GCCTCTCACCACCTACTACCA 60.619 57.143 0.00 0.00 0.00 3.25
679 1025 3.044235 TCACAAGTGGCACATCTACTG 57.956 47.619 21.41 9.02 44.52 2.74
682 1028 0.987294 AAGTGGCACATCTACTGGCT 59.013 50.000 21.41 0.00 44.52 4.75
683 1029 0.987294 AGTGGCACATCTACTGGCTT 59.013 50.000 21.41 0.00 44.52 4.35
699 1045 2.754552 TGGCTTGCAATTATTCGAGCTT 59.245 40.909 0.00 0.00 39.19 3.74
700 1046 3.944650 TGGCTTGCAATTATTCGAGCTTA 59.055 39.130 0.00 0.00 39.19 3.09
701 1047 4.035558 TGGCTTGCAATTATTCGAGCTTAG 59.964 41.667 0.00 0.00 39.19 2.18
725 1072 5.290643 GCATATATTTTCTCTGGAGCTAGCG 59.709 44.000 9.55 0.00 0.00 4.26
726 1073 2.611225 ATTTTCTCTGGAGCTAGCGG 57.389 50.000 9.55 1.46 0.00 5.52
727 1074 1.267121 TTTTCTCTGGAGCTAGCGGT 58.733 50.000 9.55 0.00 0.00 5.68
734 1081 2.885266 TCTGGAGCTAGCGGTAGTAATG 59.115 50.000 21.77 9.69 0.00 1.90
784 1135 0.252239 GAGGGGCAGTTTGGGGAATT 60.252 55.000 0.00 0.00 0.00 2.17
1100 1467 3.756783 CGTCCCTCCTCCCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
1104 1471 4.179599 CCTCCTCCCTCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1141 1508 1.036707 GTCCCTCGGATCTCTCCTTG 58.963 60.000 0.00 0.00 39.65 3.61
1217 1585 4.388499 GGGCGCTCCTTTCGTGGA 62.388 66.667 7.64 0.00 34.52 4.02
1218 1586 2.125106 GGCGCTCCTTTCGTGGAT 60.125 61.111 7.64 0.00 35.30 3.41
1219 1587 1.745489 GGCGCTCCTTTCGTGGATT 60.745 57.895 7.64 0.00 35.30 3.01
1220 1588 1.706287 GGCGCTCCTTTCGTGGATTC 61.706 60.000 7.64 0.00 35.30 2.52
1221 1589 1.999051 CGCTCCTTTCGTGGATTCG 59.001 57.895 0.00 0.00 35.30 3.34
1222 1590 1.716172 GCTCCTTTCGTGGATTCGC 59.284 57.895 0.00 0.00 35.30 4.70
1224 1592 2.025359 CTCCTTTCGTGGATTCGCGC 62.025 60.000 0.00 0.00 45.48 6.86
1225 1593 2.100631 CCTTTCGTGGATTCGCGCT 61.101 57.895 5.56 0.00 45.48 5.92
1226 1594 1.059369 CTTTCGTGGATTCGCGCTG 59.941 57.895 5.56 0.00 45.48 5.18
1227 1595 2.886512 CTTTCGTGGATTCGCGCTGC 62.887 60.000 5.56 0.00 45.48 5.25
1273 1789 1.453928 GCCTAGCCGCTGGGAAAAT 60.454 57.895 25.98 0.00 33.74 1.82
1277 1793 2.252072 TAGCCGCTGGGAAAATCGCT 62.252 55.000 2.16 0.00 34.06 4.93
1278 1794 2.700773 GCCGCTGGGAAAATCGCTT 61.701 57.895 0.00 0.00 34.06 4.68
1335 1864 2.883730 TGCACGCGACGCTTATCC 60.884 61.111 15.93 1.29 0.00 2.59
1338 1867 2.024305 ACGCGACGCTTATCCTCG 59.976 61.111 15.93 1.68 0.00 4.63
1358 1887 1.600023 GGGTTGACCATTTCGTGACA 58.400 50.000 2.12 0.00 39.85 3.58
1359 1888 1.950909 GGGTTGACCATTTCGTGACAA 59.049 47.619 2.12 0.00 39.85 3.18
1360 1889 2.031157 GGGTTGACCATTTCGTGACAAG 60.031 50.000 2.12 0.00 39.85 3.16
1363 1892 2.489971 TGACCATTTCGTGACAAGGAC 58.510 47.619 0.00 0.00 0.00 3.85
1364 1893 1.459592 GACCATTTCGTGACAAGGACG 59.540 52.381 0.00 0.00 38.20 4.79
1365 1894 1.202604 ACCATTTCGTGACAAGGACGT 60.203 47.619 0.00 0.00 38.04 4.34
1366 1895 1.459592 CCATTTCGTGACAAGGACGTC 59.540 52.381 7.13 7.13 38.04 4.34
1367 1896 2.404215 CATTTCGTGACAAGGACGTCT 58.596 47.619 16.46 0.00 38.04 4.18
1429 1979 2.689766 GCGATCGCGTTCACTGTC 59.310 61.111 26.12 0.00 40.36 3.51
1456 2006 2.767505 AGAACAACTAAGCCTGAACGG 58.232 47.619 0.00 0.00 0.00 4.44
1559 2109 3.136750 CGCAGAGATCCCTGGAGG 58.863 66.667 6.35 0.00 34.82 4.30
1561 2759 1.828768 GCAGAGATCCCTGGAGGTG 59.171 63.158 6.35 0.00 36.75 4.00
1614 3404 5.572896 GGGAAATTCATGAACGTTTGATGAC 59.427 40.000 18.48 10.35 0.00 3.06
1671 4156 4.248058 GGCTTTGGATGATTTGGTTGAAG 58.752 43.478 0.00 0.00 0.00 3.02
1737 4481 6.309737 GGTTAATAACCGTGTAGAACTGTCTG 59.690 42.308 6.41 0.00 42.62 3.51
1771 4599 2.031245 CCACAGCGAATTTACTGTTGCA 60.031 45.455 10.62 0.00 44.59 4.08
1773 4601 3.848019 CACAGCGAATTTACTGTTGCATC 59.152 43.478 10.62 0.00 44.59 3.91
1780 4608 6.412072 GCGAATTTACTGTTGCATCAATCTAC 59.588 38.462 0.00 0.00 0.00 2.59
1781 4609 7.677276 GCGAATTTACTGTTGCATCAATCTACT 60.677 37.037 0.00 0.00 0.00 2.57
1782 4610 8.177663 CGAATTTACTGTTGCATCAATCTACTT 58.822 33.333 0.00 0.00 0.00 2.24
1783 4611 9.846248 GAATTTACTGTTGCATCAATCTACTTT 57.154 29.630 0.00 0.00 0.00 2.66
1784 4612 9.630098 AATTTACTGTTGCATCAATCTACTTTG 57.370 29.630 0.00 0.00 0.00 2.77
1785 4613 7.977789 TTACTGTTGCATCAATCTACTTTGA 57.022 32.000 0.00 0.00 39.77 2.69
1786 4614 8.565896 TTACTGTTGCATCAATCTACTTTGAT 57.434 30.769 0.00 0.00 45.03 2.57
1802 4630 9.013229 TCTACTTTGATGTTATGAAATTGCTGT 57.987 29.630 0.00 0.00 0.00 4.40
1803 4631 7.878477 ACTTTGATGTTATGAAATTGCTGTG 57.122 32.000 0.00 0.00 0.00 3.66
1804 4632 6.366877 ACTTTGATGTTATGAAATTGCTGTGC 59.633 34.615 0.00 0.00 0.00 4.57
1805 4633 5.388408 TGATGTTATGAAATTGCTGTGCA 57.612 34.783 0.00 0.00 36.47 4.57
1806 4634 5.162794 TGATGTTATGAAATTGCTGTGCAC 58.837 37.500 10.75 10.75 38.71 4.57
1807 4635 4.581077 TGTTATGAAATTGCTGTGCACA 57.419 36.364 20.37 20.37 38.71 4.57
1808 4636 4.297510 TGTTATGAAATTGCTGTGCACAC 58.702 39.130 17.42 13.56 38.71 3.82
1809 4637 2.054687 ATGAAATTGCTGTGCACACG 57.945 45.000 17.42 13.34 38.71 4.49
1810 4638 1.020437 TGAAATTGCTGTGCACACGA 58.980 45.000 17.42 13.13 38.71 4.35
1811 4639 1.608109 TGAAATTGCTGTGCACACGAT 59.392 42.857 17.42 14.80 38.71 3.73
1812 4640 2.034432 TGAAATTGCTGTGCACACGATT 59.966 40.909 17.42 19.33 38.71 3.34
1813 4641 2.054687 AATTGCTGTGCACACGATTG 57.945 45.000 17.42 7.09 38.71 2.67
1814 4642 0.953727 ATTGCTGTGCACACGATTGT 59.046 45.000 17.42 0.00 38.71 2.71
1815 4643 0.737804 TTGCTGTGCACACGATTGTT 59.262 45.000 17.42 0.00 38.71 2.83
1816 4644 0.737804 TGCTGTGCACACGATTGTTT 59.262 45.000 17.42 0.00 31.66 2.83
1817 4645 1.268488 TGCTGTGCACACGATTGTTTC 60.268 47.619 17.42 0.00 31.66 2.78
1818 4646 1.268488 GCTGTGCACACGATTGTTTCA 60.268 47.619 17.42 0.00 31.66 2.69
1819 4647 2.375110 CTGTGCACACGATTGTTTCAC 58.625 47.619 17.42 0.00 37.25 3.18
1820 4648 1.740025 TGTGCACACGATTGTTTCACA 59.260 42.857 17.42 7.41 41.11 3.58
1821 4649 2.223226 TGTGCACACGATTGTTTCACAG 60.223 45.455 17.42 0.00 39.70 3.66
1822 4650 2.031560 GTGCACACGATTGTTTCACAGA 59.968 45.455 13.17 0.00 36.95 3.41
1823 4651 2.031560 TGCACACGATTGTTTCACAGAC 59.968 45.455 0.00 0.00 31.66 3.51
1824 4652 2.891391 CACACGATTGTTTCACAGACG 58.109 47.619 0.00 0.00 35.70 4.18
1825 4653 2.538037 CACACGATTGTTTCACAGACGA 59.462 45.455 10.24 0.00 34.50 4.20
1826 4654 2.538449 ACACGATTGTTTCACAGACGAC 59.462 45.455 10.24 0.00 34.50 4.34
1827 4655 2.794910 CACGATTGTTTCACAGACGACT 59.205 45.455 10.24 0.00 34.50 4.18
1828 4656 3.245284 CACGATTGTTTCACAGACGACTT 59.755 43.478 10.24 0.00 34.50 3.01
1829 4657 3.489785 ACGATTGTTTCACAGACGACTTC 59.510 43.478 10.24 0.00 34.50 3.01
1830 4658 3.736252 CGATTGTTTCACAGACGACTTCT 59.264 43.478 0.00 0.00 33.10 2.85
1839 4667 2.177977 CAGACGACTTCTGTACGATGC 58.822 52.381 0.82 0.00 46.12 3.91
1840 4668 2.085320 AGACGACTTCTGTACGATGCT 58.915 47.619 0.00 0.00 31.12 3.79
1841 4669 2.096174 AGACGACTTCTGTACGATGCTC 59.904 50.000 0.00 0.00 31.12 4.26
1842 4670 1.132643 ACGACTTCTGTACGATGCTCC 59.867 52.381 0.00 0.00 0.00 4.70
1843 4671 1.534175 CGACTTCTGTACGATGCTCCC 60.534 57.143 0.00 0.00 0.00 4.30
1844 4672 1.476891 GACTTCTGTACGATGCTCCCA 59.523 52.381 0.00 0.00 0.00 4.37
1845 4673 2.101582 GACTTCTGTACGATGCTCCCAT 59.898 50.000 0.00 0.00 0.00 4.00
1846 4674 2.101582 ACTTCTGTACGATGCTCCCATC 59.898 50.000 0.00 0.00 43.55 3.51
1852 4680 3.978272 GATGCTCCCATCGATGGC 58.022 61.111 34.77 24.65 46.70 4.40
1853 4681 1.374190 GATGCTCCCATCGATGGCT 59.626 57.895 34.77 17.70 46.70 4.75
1854 4682 0.954449 GATGCTCCCATCGATGGCTG 60.954 60.000 34.77 27.89 46.70 4.85
1855 4683 2.976903 GCTCCCATCGATGGCTGC 60.977 66.667 34.77 32.13 46.70 5.25
1856 4684 2.827423 CTCCCATCGATGGCTGCT 59.173 61.111 34.77 0.00 46.70 4.24
1857 4685 1.597302 CTCCCATCGATGGCTGCTG 60.597 63.158 34.77 22.19 46.70 4.41
1858 4686 3.285215 CCCATCGATGGCTGCTGC 61.285 66.667 34.77 7.10 46.70 5.25
1878 4706 3.893720 GCCTGCAGCATATGTGATAAAC 58.106 45.455 8.66 0.00 42.97 2.01
1879 4707 3.607775 GCCTGCAGCATATGTGATAAACG 60.608 47.826 8.66 0.00 42.97 3.60
1880 4708 3.058708 CCTGCAGCATATGTGATAAACGG 60.059 47.826 8.66 0.00 0.00 4.44
1881 4709 3.540617 TGCAGCATATGTGATAAACGGT 58.459 40.909 4.29 0.00 0.00 4.83
1882 4710 3.944650 TGCAGCATATGTGATAAACGGTT 59.055 39.130 4.29 0.00 0.00 4.44
1883 4711 4.201901 TGCAGCATATGTGATAAACGGTTG 60.202 41.667 4.29 0.00 0.00 3.77
1884 4712 4.201910 GCAGCATATGTGATAAACGGTTGT 60.202 41.667 4.29 0.00 0.00 3.32
1885 4713 5.007234 GCAGCATATGTGATAAACGGTTGTA 59.993 40.000 4.29 0.00 0.00 2.41
1886 4714 6.418956 CAGCATATGTGATAAACGGTTGTAC 58.581 40.000 4.29 0.00 0.00 2.90
1887 4715 6.257849 CAGCATATGTGATAAACGGTTGTACT 59.742 38.462 4.29 0.00 0.00 2.73
1888 4716 6.479001 AGCATATGTGATAAACGGTTGTACTC 59.521 38.462 4.29 0.00 0.00 2.59
1889 4717 6.292703 GCATATGTGATAAACGGTTGTACTCC 60.293 42.308 4.29 0.00 0.00 3.85
1890 4718 3.929094 TGTGATAAACGGTTGTACTCCC 58.071 45.455 0.00 0.00 0.00 4.30
1891 4719 3.579586 TGTGATAAACGGTTGTACTCCCT 59.420 43.478 0.00 0.00 0.00 4.20
1892 4720 4.179298 GTGATAAACGGTTGTACTCCCTC 58.821 47.826 0.00 0.00 0.00 4.30
1893 4721 4.081807 GTGATAAACGGTTGTACTCCCTCT 60.082 45.833 0.00 0.00 0.00 3.69
1894 4722 2.833631 AAACGGTTGTACTCCCTCTG 57.166 50.000 0.00 0.00 0.00 3.35
1895 4723 1.713297 AACGGTTGTACTCCCTCTGT 58.287 50.000 0.00 0.00 0.00 3.41
1896 4724 1.254954 ACGGTTGTACTCCCTCTGTC 58.745 55.000 0.00 0.00 0.00 3.51
1897 4725 0.531200 CGGTTGTACTCCCTCTGTCC 59.469 60.000 0.00 0.00 0.00 4.02
1898 4726 0.903236 GGTTGTACTCCCTCTGTCCC 59.097 60.000 0.00 0.00 0.00 4.46
1899 4727 1.640917 GTTGTACTCCCTCTGTCCCA 58.359 55.000 0.00 0.00 0.00 4.37
1900 4728 2.188817 GTTGTACTCCCTCTGTCCCAT 58.811 52.381 0.00 0.00 0.00 4.00
1901 4729 3.371965 GTTGTACTCCCTCTGTCCCATA 58.628 50.000 0.00 0.00 0.00 2.74
1902 4730 3.769189 TGTACTCCCTCTGTCCCATAA 57.231 47.619 0.00 0.00 0.00 1.90
1903 4731 3.371965 TGTACTCCCTCTGTCCCATAAC 58.628 50.000 0.00 0.00 0.00 1.89
1904 4732 2.950990 ACTCCCTCTGTCCCATAACT 57.049 50.000 0.00 0.00 0.00 2.24
1905 4733 4.231195 TGTACTCCCTCTGTCCCATAACTA 59.769 45.833 0.00 0.00 0.00 2.24
1906 4734 3.644335 ACTCCCTCTGTCCCATAACTAC 58.356 50.000 0.00 0.00 0.00 2.73
1907 4735 3.012502 ACTCCCTCTGTCCCATAACTACA 59.987 47.826 0.00 0.00 0.00 2.74
1908 4736 3.371965 TCCCTCTGTCCCATAACTACAC 58.628 50.000 0.00 0.00 0.00 2.90
1909 4737 3.012502 TCCCTCTGTCCCATAACTACACT 59.987 47.826 0.00 0.00 0.00 3.55
1910 4738 4.231195 TCCCTCTGTCCCATAACTACACTA 59.769 45.833 0.00 0.00 0.00 2.74
1911 4739 4.585162 CCCTCTGTCCCATAACTACACTAG 59.415 50.000 0.00 0.00 0.00 2.57
1912 4740 5.202004 CCTCTGTCCCATAACTACACTAGT 58.798 45.833 0.00 0.00 41.73 2.57
1913 4741 5.067936 CCTCTGTCCCATAACTACACTAGTG 59.932 48.000 21.44 21.44 39.39 2.74
1914 4742 5.577100 TCTGTCCCATAACTACACTAGTGT 58.423 41.667 30.13 30.13 46.87 3.55
1915 4743 5.651139 TCTGTCCCATAACTACACTAGTGTC 59.349 44.000 31.11 13.55 43.74 3.67
1916 4744 5.326900 TGTCCCATAACTACACTAGTGTCA 58.673 41.667 31.11 15.92 43.74 3.58
1917 4745 5.776208 TGTCCCATAACTACACTAGTGTCAA 59.224 40.000 31.11 14.69 43.74 3.18
1918 4746 6.268158 TGTCCCATAACTACACTAGTGTCAAA 59.732 38.462 31.11 13.94 43.74 2.69
1919 4747 7.156673 GTCCCATAACTACACTAGTGTCAAAA 58.843 38.462 31.11 16.12 43.74 2.44
1920 4748 7.658575 GTCCCATAACTACACTAGTGTCAAAAA 59.341 37.037 31.11 13.19 43.74 1.94
1921 4749 7.876068 TCCCATAACTACACTAGTGTCAAAAAG 59.124 37.037 31.11 23.33 43.74 2.27
1922 4750 7.360946 CCCATAACTACACTAGTGTCAAAAAGC 60.361 40.741 31.11 0.00 43.74 3.51
1923 4751 5.652744 AACTACACTAGTGTCAAAAAGCG 57.347 39.130 31.11 12.68 43.74 4.68
1924 4752 4.690122 ACTACACTAGTGTCAAAAAGCGT 58.310 39.130 31.11 13.23 43.74 5.07
1925 4753 4.743644 ACTACACTAGTGTCAAAAAGCGTC 59.256 41.667 31.11 0.00 43.74 5.19
1926 4754 3.793559 ACACTAGTGTCAAAAAGCGTCT 58.206 40.909 22.95 0.00 40.24 4.18
1927 4755 4.189231 ACACTAGTGTCAAAAAGCGTCTT 58.811 39.130 22.95 0.00 40.24 3.01
1928 4756 5.353938 ACACTAGTGTCAAAAAGCGTCTTA 58.646 37.500 22.95 0.00 40.24 2.10
1929 4757 5.233689 ACACTAGTGTCAAAAAGCGTCTTAC 59.766 40.000 22.95 0.00 40.24 2.34
1930 4758 5.233476 CACTAGTGTCAAAAAGCGTCTTACA 59.767 40.000 15.06 0.00 0.00 2.41
1935 4763 7.298122 AGTGTCAAAAAGCGTCTTACATTATG 58.702 34.615 0.00 0.00 0.00 1.90
1937 4765 6.027749 GTCAAAAAGCGTCTTACATTATGGG 58.972 40.000 0.00 0.00 0.00 4.00
1939 4767 5.813080 AAAAGCGTCTTACATTATGGGAC 57.187 39.130 0.00 1.75 0.00 4.46
1955 4784 3.323775 TGGGACAGAGGGAGTAGTTTTT 58.676 45.455 0.00 0.00 0.00 1.94
1974 4803 4.446857 TTTTTGTCGTCTGTGAATCGTC 57.553 40.909 0.00 0.00 0.00 4.20
1976 4805 0.109919 TGTCGTCTGTGAATCGTCCG 60.110 55.000 0.00 0.00 0.00 4.79
1977 4806 1.154093 TCGTCTGTGAATCGTCCGC 60.154 57.895 0.00 0.00 0.00 5.54
1978 4807 1.443702 CGTCTGTGAATCGTCCGCA 60.444 57.895 0.00 0.00 0.00 5.69
1980 4809 0.716108 GTCTGTGAATCGTCCGCAAG 59.284 55.000 0.00 0.00 0.00 4.01
1981 4810 1.014044 TCTGTGAATCGTCCGCAAGC 61.014 55.000 0.00 0.00 0.00 4.01
1982 4811 2.283780 CTGTGAATCGTCCGCAAGCG 62.284 60.000 7.60 7.60 39.44 4.68
2053 4978 8.604890 CGAGGATAAATCTAGGTTTGAACTTTC 58.395 37.037 11.38 1.42 0.00 2.62
2176 5369 7.217200 TGCAAGATATTCTCAGTATTGTACCC 58.783 38.462 0.00 0.00 0.00 3.69
2232 5527 6.116126 GTGGATAGTCCTTACTGCTTTCAAT 58.884 40.000 0.00 0.00 37.46 2.57
2250 5545 8.563732 GCTTTCAATCTCATTTAGACCTTATCC 58.436 37.037 0.00 0.00 36.93 2.59
2351 5782 9.034544 GTGATGTTTGCTGTTTTCTAAAGAAAT 57.965 29.630 6.01 0.00 42.83 2.17
2383 6619 7.017498 TGTTTTAAGCACAATCAACGTTCTA 57.983 32.000 0.00 0.00 0.00 2.10
2411 6647 5.003160 TGATCCTGGAGTTGTTTGTATGTG 58.997 41.667 1.52 0.00 0.00 3.21
2802 7196 1.304381 ATGGCCAAATGAGCACCGT 60.304 52.632 10.96 0.00 0.00 4.83
2803 7197 1.597797 ATGGCCAAATGAGCACCGTG 61.598 55.000 10.96 0.00 0.00 4.94
3019 7414 1.678101 GTATCCTGATTGCTGTTGGGC 59.322 52.381 0.00 0.00 0.00 5.36
3099 7494 3.143728 AGCCGGTGTTTCGTAATTCTTT 58.856 40.909 1.90 0.00 0.00 2.52
3107 7502 7.070183 GGTGTTTCGTAATTCTTTGACTCTTC 58.930 38.462 0.00 0.00 0.00 2.87
3136 7531 7.798596 ATTTTACAGATGTTATCCTGAGCTG 57.201 36.000 0.00 0.00 34.65 4.24
3143 7538 0.108186 TTATCCTGAGCTGTGGTGCG 60.108 55.000 0.00 0.00 38.13 5.34
3146 7541 3.720193 CTGAGCTGTGGTGCGTGC 61.720 66.667 0.00 0.00 38.13 5.34
3372 7780 2.242196 CCTCTTAAGGCCTGGAATTCCA 59.758 50.000 25.53 25.53 38.79 3.53
3390 7798 2.158623 TCCATGTGCTTGTGGAAGAGTT 60.159 45.455 2.65 0.00 41.36 3.01
3397 7805 2.945668 GCTTGTGGAAGAGTTGAACACT 59.054 45.455 0.00 0.00 39.07 3.55
3398 7806 3.378427 GCTTGTGGAAGAGTTGAACACTT 59.622 43.478 7.72 7.72 35.01 3.16
3441 7871 1.203441 TCAAGGTGCTCTGCCTCCAT 61.203 55.000 0.00 0.00 34.81 3.41
3564 7994 4.686839 AGATCCTGTTTAAGCGCTTTTC 57.313 40.909 30.13 18.28 0.00 2.29
3713 8143 4.514066 GTGGTTTCAGTTCGACAAGGTATT 59.486 41.667 0.00 0.00 0.00 1.89
3714 8144 4.753107 TGGTTTCAGTTCGACAAGGTATTC 59.247 41.667 0.00 0.00 0.00 1.75
3717 8147 6.347483 GGTTTCAGTTCGACAAGGTATTCTTC 60.347 42.308 0.00 0.00 32.41 2.87
3718 8148 5.462530 TCAGTTCGACAAGGTATTCTTCA 57.537 39.130 0.00 0.00 32.41 3.02
3719 8149 5.470368 TCAGTTCGACAAGGTATTCTTCAG 58.530 41.667 0.00 0.00 32.41 3.02
3720 8150 5.010719 TCAGTTCGACAAGGTATTCTTCAGT 59.989 40.000 0.00 0.00 32.41 3.41
3721 8151 6.208007 TCAGTTCGACAAGGTATTCTTCAGTA 59.792 38.462 0.00 0.00 32.41 2.74
3722 8152 6.308282 CAGTTCGACAAGGTATTCTTCAGTAC 59.692 42.308 0.00 0.00 32.41 2.73
3723 8153 6.208994 AGTTCGACAAGGTATTCTTCAGTACT 59.791 38.462 0.00 0.00 32.41 2.73
3724 8154 6.192234 TCGACAAGGTATTCTTCAGTACTC 57.808 41.667 0.00 0.00 32.41 2.59
3725 8155 5.125097 TCGACAAGGTATTCTTCAGTACTCC 59.875 44.000 0.00 0.00 32.41 3.85
3726 8156 5.662456 GACAAGGTATTCTTCAGTACTCCC 58.338 45.833 0.00 0.00 32.41 4.30
3727 8157 5.342866 ACAAGGTATTCTTCAGTACTCCCT 58.657 41.667 0.00 0.00 32.41 4.20
3728 8158 5.422650 ACAAGGTATTCTTCAGTACTCCCTC 59.577 44.000 0.00 0.00 32.41 4.30
3729 8159 4.548669 AGGTATTCTTCAGTACTCCCTCC 58.451 47.826 0.00 0.00 0.00 4.30
3730 8160 3.318557 GGTATTCTTCAGTACTCCCTCCG 59.681 52.174 0.00 0.00 0.00 4.63
3731 8161 2.599408 TTCTTCAGTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
3732 8162 3.726557 TTCTTCAGTACTCCCTCCGTA 57.273 47.619 0.00 0.00 0.00 4.02
3733 8163 3.726557 TCTTCAGTACTCCCTCCGTAA 57.273 47.619 0.00 0.00 0.00 3.18
3734 8164 4.038271 TCTTCAGTACTCCCTCCGTAAA 57.962 45.455 0.00 0.00 0.00 2.01
3735 8165 3.760684 TCTTCAGTACTCCCTCCGTAAAC 59.239 47.826 0.00 0.00 0.00 2.01
3736 8166 3.446442 TCAGTACTCCCTCCGTAAACT 57.554 47.619 0.00 0.00 0.00 2.66
3737 8167 4.574674 TCAGTACTCCCTCCGTAAACTA 57.425 45.455 0.00 0.00 0.00 2.24
3738 8168 4.922206 TCAGTACTCCCTCCGTAAACTAA 58.078 43.478 0.00 0.00 0.00 2.24
3739 8169 5.513233 TCAGTACTCCCTCCGTAAACTAAT 58.487 41.667 0.00 0.00 0.00 1.73
3740 8170 6.662755 TCAGTACTCCCTCCGTAAACTAATA 58.337 40.000 0.00 0.00 0.00 0.98
3741 8171 7.293073 TCAGTACTCCCTCCGTAAACTAATAT 58.707 38.462 0.00 0.00 0.00 1.28
3742 8172 8.439971 TCAGTACTCCCTCCGTAAACTAATATA 58.560 37.037 0.00 0.00 0.00 0.86
3743 8173 9.071276 CAGTACTCCCTCCGTAAACTAATATAA 57.929 37.037 0.00 0.00 0.00 0.98
3744 8174 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3745 8175 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3746 8176 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3747 8177 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
3748 8178 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
3749 8179 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
3750 8180 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
3751 8181 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 9.400638 GATAGGCGTCATAGCATAGTATTATTC 57.599 37.037 0.00 0.00 36.81 1.75
93 95 7.095270 TCCTTCTCTAAAACAACGATAAGGTC 58.905 38.462 0.00 0.00 34.48 3.85
130 132 3.925379 TGTATTCTCGCTTGCTTCTCAA 58.075 40.909 0.00 0.00 0.00 3.02
132 134 6.777526 ATATTGTATTCTCGCTTGCTTCTC 57.222 37.500 0.00 0.00 0.00 2.87
133 135 7.559590 AAATATTGTATTCTCGCTTGCTTCT 57.440 32.000 0.00 0.00 0.00 2.85
157 161 1.131303 ACAAGGGGATCGGACCACAA 61.131 55.000 4.12 0.00 35.49 3.33
159 163 0.177373 GTACAAGGGGATCGGACCAC 59.823 60.000 0.00 0.00 0.00 4.16
164 168 4.617530 CGTGTATATGTACAAGGGGATCGG 60.618 50.000 3.63 0.00 42.18 4.18
165 169 4.022589 ACGTGTATATGTACAAGGGGATCG 60.023 45.833 17.19 11.19 42.34 3.69
175 179 4.832590 AGCCTGAGACGTGTATATGTAC 57.167 45.455 0.00 0.00 0.00 2.90
202 206 4.561606 CACGTGTGTAAGTGGCTCTATTAC 59.438 45.833 7.58 0.00 33.41 1.89
205 209 2.674177 GCACGTGTGTAAGTGGCTCTAT 60.674 50.000 18.38 0.00 36.88 1.98
206 210 1.336517 GCACGTGTGTAAGTGGCTCTA 60.337 52.381 18.38 0.00 36.88 2.43
207 211 0.600255 GCACGTGTGTAAGTGGCTCT 60.600 55.000 18.38 0.00 36.88 4.09
208 212 1.860078 GCACGTGTGTAAGTGGCTC 59.140 57.895 18.38 0.00 36.88 4.70
209 213 1.954146 CGCACGTGTGTAAGTGGCT 60.954 57.895 20.82 0.00 36.88 4.75
210 214 2.241880 ACGCACGTGTGTAAGTGGC 61.242 57.895 31.91 5.77 36.88 5.01
211 215 1.562691 CACGCACGTGTGTAAGTGG 59.437 57.895 32.26 17.14 40.91 4.00
221 225 0.103572 AGTAAGTTGGACACGCACGT 59.896 50.000 0.00 0.00 0.00 4.49
222 226 0.782384 GAGTAAGTTGGACACGCACG 59.218 55.000 0.00 0.00 0.00 5.34
228 232 1.004277 GGCCCATGAGTAAGTTGGACA 59.996 52.381 0.00 0.00 31.94 4.02
230 234 1.367346 TGGCCCATGAGTAAGTTGGA 58.633 50.000 0.00 0.00 31.94 3.53
244 248 2.859165 TCGATAGAATGGATTGGCCC 57.141 50.000 0.00 0.00 46.15 5.80
270 274 4.534401 GGCAATGGACCGGTAGAC 57.466 61.111 7.34 0.87 0.00 2.59
288 292 4.573900 TCAAAAAGAGAGAGATGGAGCAC 58.426 43.478 0.00 0.00 0.00 4.40
325 329 2.832661 TTGGTATGCCATGGCGCC 60.833 61.111 30.87 29.07 45.56 6.53
327 331 0.464373 AGTCTTGGTATGCCATGGCG 60.464 55.000 30.87 15.26 45.77 5.69
328 332 2.222027 GTAGTCTTGGTATGCCATGGC 58.778 52.381 30.54 30.54 45.56 4.40
329 333 3.558931 TGTAGTCTTGGTATGCCATGG 57.441 47.619 7.63 7.63 45.56 3.66
331 335 5.573380 ATGATGTAGTCTTGGTATGCCAT 57.427 39.130 2.33 0.00 45.56 4.40
333 337 6.936900 ACATTATGATGTAGTCTTGGTATGCC 59.063 38.462 0.41 0.00 44.51 4.40
335 339 9.716531 ATGACATTATGATGTAGTCTTGGTATG 57.283 33.333 2.64 0.00 46.27 2.39
336 340 9.935241 GATGACATTATGATGTAGTCTTGGTAT 57.065 33.333 2.64 0.00 46.27 2.73
337 341 8.923270 TGATGACATTATGATGTAGTCTTGGTA 58.077 33.333 2.64 0.00 46.27 3.25
338 342 7.795047 TGATGACATTATGATGTAGTCTTGGT 58.205 34.615 2.64 0.00 46.27 3.67
339 343 8.843885 ATGATGACATTATGATGTAGTCTTGG 57.156 34.615 2.64 0.00 46.27 3.61
348 352 8.736244 TGCTGGATTTATGATGACATTATGATG 58.264 33.333 0.00 0.00 37.87 3.07
349 353 8.873186 TGCTGGATTTATGATGACATTATGAT 57.127 30.769 0.00 0.00 37.87 2.45
364 368 9.494271 GTACTGATATCAAAGATGCTGGATTTA 57.506 33.333 6.90 0.00 0.00 1.40
365 369 7.994911 TGTACTGATATCAAAGATGCTGGATTT 59.005 33.333 6.90 0.00 0.00 2.17
366 370 7.443575 GTGTACTGATATCAAAGATGCTGGATT 59.556 37.037 6.90 0.00 0.00 3.01
367 371 6.933521 GTGTACTGATATCAAAGATGCTGGAT 59.066 38.462 6.90 0.00 0.00 3.41
368 372 6.127083 TGTGTACTGATATCAAAGATGCTGGA 60.127 38.462 6.90 0.00 0.00 3.86
370 374 7.543947 TTGTGTACTGATATCAAAGATGCTG 57.456 36.000 6.90 0.00 0.00 4.41
371 375 7.989170 TGATTGTGTACTGATATCAAAGATGCT 59.011 33.333 6.90 0.00 0.00 3.79
372 376 8.146479 TGATTGTGTACTGATATCAAAGATGC 57.854 34.615 6.90 0.00 0.00 3.91
382 560 7.593644 GCATGTACGTATGATTGTGTACTGATA 59.406 37.037 0.00 0.00 38.35 2.15
386 564 5.656480 TGCATGTACGTATGATTGTGTACT 58.344 37.500 0.00 0.00 38.35 2.73
400 578 0.443869 GCTTCCACACTGCATGTACG 59.556 55.000 0.00 0.00 40.64 3.67
402 580 1.202746 TGTGCTTCCACACTGCATGTA 60.203 47.619 0.00 0.00 46.51 2.29
412 590 2.143925 GTGTTCCTACTGTGCTTCCAC 58.856 52.381 0.00 0.00 42.40 4.02
414 592 2.543777 TGTGTTCCTACTGTGCTTCC 57.456 50.000 0.00 0.00 0.00 3.46
418 596 3.189287 CCTTTCATGTGTTCCTACTGTGC 59.811 47.826 0.00 0.00 0.00 4.57
421 599 2.749621 GGCCTTTCATGTGTTCCTACTG 59.250 50.000 0.00 0.00 0.00 2.74
422 600 2.290960 GGGCCTTTCATGTGTTCCTACT 60.291 50.000 0.84 0.00 0.00 2.57
423 601 2.092323 GGGCCTTTCATGTGTTCCTAC 58.908 52.381 0.84 0.00 0.00 3.18
425 603 0.482446 TGGGCCTTTCATGTGTTCCT 59.518 50.000 4.53 0.00 0.00 3.36
426 604 1.337118 TTGGGCCTTTCATGTGTTCC 58.663 50.000 4.53 0.00 0.00 3.62
428 606 2.550639 GCATTTGGGCCTTTCATGTGTT 60.551 45.455 4.53 0.00 0.00 3.32
430 608 1.002201 TGCATTTGGGCCTTTCATGTG 59.998 47.619 4.53 0.00 0.00 3.21
436 614 0.106521 GTGTGTGCATTTGGGCCTTT 59.893 50.000 4.53 0.00 0.00 3.11
443 621 0.943673 TCCTCGTGTGTGTGCATTTG 59.056 50.000 0.00 0.00 0.00 2.32
457 635 0.108138 GGTTGTGTGATCCCTCCTCG 60.108 60.000 0.00 0.00 0.00 4.63
462 640 2.647299 TGGTTATGGTTGTGTGATCCCT 59.353 45.455 0.00 0.00 0.00 4.20
476 654 0.953727 CGTGCATCCCCATGGTTATG 59.046 55.000 11.73 14.27 0.00 1.90
478 656 0.107410 GTCGTGCATCCCCATGGTTA 60.107 55.000 11.73 0.00 0.00 2.85
481 659 2.516930 GGTCGTGCATCCCCATGG 60.517 66.667 4.14 4.14 0.00 3.66
486 664 4.832608 GGGTCGGTCGTGCATCCC 62.833 72.222 0.00 0.00 0.00 3.85
487 665 4.832608 GGGGTCGGTCGTGCATCC 62.833 72.222 0.00 0.00 0.00 3.51
499 677 3.194968 TGTATTTCTCTTGACTCGGGGTC 59.805 47.826 0.00 0.00 44.70 4.46
501 679 3.522553 GTGTATTTCTCTTGACTCGGGG 58.477 50.000 0.00 0.00 0.00 5.73
502 680 3.119602 TCGTGTATTTCTCTTGACTCGGG 60.120 47.826 0.00 0.00 31.63 5.14
504 682 4.099120 CCTCGTGTATTTCTCTTGACTCG 58.901 47.826 0.00 0.00 0.00 4.18
505 683 3.860536 GCCTCGTGTATTTCTCTTGACTC 59.139 47.826 0.00 0.00 0.00 3.36
530 708 1.227793 GTCATGGCTAGGCTCTGGC 60.228 63.158 18.18 12.44 37.24 4.85
546 724 6.856426 GGTAGAAAACTAATGCAACTTGTGTC 59.144 38.462 0.00 0.00 0.00 3.67
548 726 6.149633 GGGTAGAAAACTAATGCAACTTGTG 58.850 40.000 0.00 0.00 0.00 3.33
569 747 0.331616 GATGGCCACCTAACTTGGGT 59.668 55.000 8.16 0.00 37.59 4.51
596 774 7.430571 GTGAGAGGCACGAATTCATGGAATG 62.431 48.000 3.38 0.00 41.20 2.67
679 1025 3.427161 AAGCTCGAATAATTGCAAGCC 57.573 42.857 4.94 0.00 0.00 4.35
682 1028 5.756195 ATGCTAAGCTCGAATAATTGCAA 57.244 34.783 0.00 0.00 0.00 4.08
683 1029 8.722480 ATATATGCTAAGCTCGAATAATTGCA 57.278 30.769 0.00 0.00 0.00 4.08
699 1045 7.551585 GCTAGCTCCAGAGAAAATATATGCTA 58.448 38.462 7.70 0.00 0.00 3.49
700 1046 6.405538 GCTAGCTCCAGAGAAAATATATGCT 58.594 40.000 7.70 0.00 0.00 3.79
701 1047 5.290643 CGCTAGCTCCAGAGAAAATATATGC 59.709 44.000 13.93 0.00 0.00 3.14
725 1072 4.689345 ACGCTCTTGTTGTTCATTACTACC 59.311 41.667 0.00 0.00 32.40 3.18
726 1073 5.404366 TGACGCTCTTGTTGTTCATTACTAC 59.596 40.000 0.00 0.00 33.76 2.73
727 1074 5.404366 GTGACGCTCTTGTTGTTCATTACTA 59.596 40.000 0.00 0.00 0.00 1.82
734 1081 0.232303 CCGTGACGCTCTTGTTGTTC 59.768 55.000 0.00 0.00 0.00 3.18
819 1170 4.619227 CAACGCCCCACCGTCAGT 62.619 66.667 0.00 0.00 41.16 3.41
888 1239 0.392327 GAGCAAACAGAGAGAGGCCC 60.392 60.000 0.00 0.00 0.00 5.80
1104 1471 2.064581 CGGGAGGTGTAAGGGAGGG 61.065 68.421 0.00 0.00 0.00 4.30
1106 1473 1.328430 GGACGGGAGGTGTAAGGGAG 61.328 65.000 0.00 0.00 0.00 4.30
1107 1474 1.305549 GGACGGGAGGTGTAAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
1109 1476 1.305887 AGGGACGGGAGGTGTAAGG 60.306 63.158 0.00 0.00 0.00 2.69
1110 1477 1.664321 CGAGGGACGGGAGGTGTAAG 61.664 65.000 0.00 0.00 38.46 2.34
1112 1479 2.044650 CGAGGGACGGGAGGTGTA 60.045 66.667 0.00 0.00 38.46 2.90
1200 1568 3.682292 ATCCACGAAAGGAGCGCCC 62.682 63.158 2.29 5.07 41.90 6.13
1201 1569 1.706287 GAATCCACGAAAGGAGCGCC 61.706 60.000 2.29 0.00 41.90 6.53
1202 1570 1.716172 GAATCCACGAAAGGAGCGC 59.284 57.895 0.00 0.00 41.90 5.92
1203 1571 1.999051 CGAATCCACGAAAGGAGCG 59.001 57.895 0.00 0.00 41.90 5.03
1204 1572 1.716172 GCGAATCCACGAAAGGAGC 59.284 57.895 0.00 0.00 41.90 4.70
1206 1574 2.098233 GCGCGAATCCACGAAAGGA 61.098 57.895 12.10 0.00 43.01 3.36
1208 1576 1.059369 CAGCGCGAATCCACGAAAG 59.941 57.895 12.10 0.00 35.09 2.62
1210 1578 3.487202 GCAGCGCGAATCCACGAA 61.487 61.111 12.10 0.00 35.09 3.85
1259 1775 3.134127 GCGATTTTCCCAGCGGCT 61.134 61.111 0.00 0.00 0.00 5.52
1277 1793 2.706432 CGCACACGACAGCAACAA 59.294 55.556 0.00 0.00 43.93 2.83
1278 1794 3.935872 GCGCACACGACAGCAACA 61.936 61.111 0.30 0.00 43.93 3.33
1309 1832 3.553765 TCGCGTGCACATCATCGC 61.554 61.111 18.64 12.38 39.80 4.58
1335 1864 0.321298 ACGAAATGGTCAACCCCGAG 60.321 55.000 0.00 0.00 34.29 4.63
1338 1867 0.879090 GTCACGAAATGGTCAACCCC 59.121 55.000 0.00 0.00 34.29 4.95
1373 1902 3.598019 AATAAAACCTAGACGGCGACA 57.402 42.857 16.62 0.00 35.61 4.35
1422 1972 3.318275 AGTTGTTCTAGAAGCGACAGTGA 59.682 43.478 19.20 0.00 0.00 3.41
1429 1979 3.614616 CAGGCTTAGTTGTTCTAGAAGCG 59.385 47.826 5.12 0.00 34.86 4.68
1456 2006 0.511221 CACGGTCAACAATCACGACC 59.489 55.000 0.00 0.00 44.79 4.79
1559 2109 2.749621 ACATGGCGAGATTTTTCTCCAC 59.250 45.455 0.00 0.00 34.98 4.02
1561 2759 4.192317 ACTACATGGCGAGATTTTTCTCC 58.808 43.478 0.00 0.00 33.38 3.71
1625 3956 8.655970 GCCGAATCAAACAATAGCTTAAAATTT 58.344 29.630 0.00 0.00 0.00 1.82
1633 3964 4.380867 CCAAAGCCGAATCAAACAATAGCT 60.381 41.667 0.00 0.00 0.00 3.32
1640 3971 3.848272 TCATCCAAAGCCGAATCAAAC 57.152 42.857 0.00 0.00 0.00 2.93
1641 3972 5.170021 CAAATCATCCAAAGCCGAATCAAA 58.830 37.500 0.00 0.00 0.00 2.69
1733 4286 3.020984 TGTGGAAAGTTCAAACCCAGAC 58.979 45.455 0.00 0.00 0.00 3.51
1737 4481 1.269051 CGCTGTGGAAAGTTCAAACCC 60.269 52.381 0.00 0.00 0.00 4.11
1780 4608 6.366604 TGCACAGCAATTTCATAACATCAAAG 59.633 34.615 0.00 0.00 34.76 2.77
1781 4609 6.145858 GTGCACAGCAATTTCATAACATCAAA 59.854 34.615 13.17 0.00 41.47 2.69
1782 4610 5.634439 GTGCACAGCAATTTCATAACATCAA 59.366 36.000 13.17 0.00 41.47 2.57
1783 4611 5.162794 GTGCACAGCAATTTCATAACATCA 58.837 37.500 13.17 0.00 41.47 3.07
1784 4612 5.061311 GTGTGCACAGCAATTTCATAACATC 59.939 40.000 22.40 0.00 41.47 3.06
1785 4613 4.925054 GTGTGCACAGCAATTTCATAACAT 59.075 37.500 22.40 0.00 41.47 2.71
1786 4614 4.297510 GTGTGCACAGCAATTTCATAACA 58.702 39.130 22.40 0.00 41.47 2.41
1787 4615 3.361644 CGTGTGCACAGCAATTTCATAAC 59.638 43.478 22.40 2.21 41.47 1.89
1788 4616 3.251972 TCGTGTGCACAGCAATTTCATAA 59.748 39.130 22.40 0.00 41.47 1.90
1789 4617 2.810852 TCGTGTGCACAGCAATTTCATA 59.189 40.909 22.40 0.00 41.47 2.15
1790 4618 1.608109 TCGTGTGCACAGCAATTTCAT 59.392 42.857 22.40 0.00 41.47 2.57
1791 4619 1.020437 TCGTGTGCACAGCAATTTCA 58.980 45.000 22.40 0.00 41.47 2.69
1792 4620 2.336554 ATCGTGTGCACAGCAATTTC 57.663 45.000 22.40 5.45 41.47 2.17
1793 4621 2.223782 ACAATCGTGTGCACAGCAATTT 60.224 40.909 22.40 7.18 41.47 1.82
1794 4622 1.337703 ACAATCGTGTGCACAGCAATT 59.662 42.857 22.40 16.51 41.47 2.32
1795 4623 0.953727 ACAATCGTGTGCACAGCAAT 59.046 45.000 22.40 11.18 41.47 3.56
1796 4624 0.737804 AACAATCGTGTGCACAGCAA 59.262 45.000 22.40 9.10 41.47 3.91
1797 4625 0.737804 AAACAATCGTGTGCACAGCA 59.262 45.000 22.40 10.22 38.27 4.41
1798 4626 1.268488 TGAAACAATCGTGTGCACAGC 60.268 47.619 22.40 14.14 38.27 4.40
1799 4627 2.375110 GTGAAACAATCGTGTGCACAG 58.625 47.619 22.40 14.50 40.72 3.66
1800 4628 2.466870 GTGAAACAATCGTGTGCACA 57.533 45.000 17.42 17.42 40.72 4.57
1820 4648 2.085320 AGCATCGTACAGAAGTCGTCT 58.915 47.619 0.00 0.00 36.88 4.18
1821 4649 2.442424 GAGCATCGTACAGAAGTCGTC 58.558 52.381 0.00 0.00 0.00 4.20
1822 4650 1.132643 GGAGCATCGTACAGAAGTCGT 59.867 52.381 0.00 0.00 34.37 4.34
1823 4651 1.534175 GGGAGCATCGTACAGAAGTCG 60.534 57.143 0.00 0.00 34.37 4.18
1824 4652 1.476891 TGGGAGCATCGTACAGAAGTC 59.523 52.381 0.00 0.00 34.37 3.01
1825 4653 1.557099 TGGGAGCATCGTACAGAAGT 58.443 50.000 0.00 0.00 34.37 3.01
1826 4654 2.748605 GATGGGAGCATCGTACAGAAG 58.251 52.381 0.00 0.00 34.37 2.85
1827 4655 1.067060 CGATGGGAGCATCGTACAGAA 59.933 52.381 0.00 0.00 46.47 3.02
1828 4656 0.668535 CGATGGGAGCATCGTACAGA 59.331 55.000 0.00 0.00 46.47 3.41
1829 4657 3.185651 CGATGGGAGCATCGTACAG 57.814 57.895 0.00 0.00 46.47 2.74
1857 4685 3.607775 CGTTTATCACATATGCTGCAGGC 60.608 47.826 17.12 8.54 42.22 4.85
1858 4686 3.058708 CCGTTTATCACATATGCTGCAGG 60.059 47.826 17.12 0.00 0.00 4.85
1859 4687 3.561310 ACCGTTTATCACATATGCTGCAG 59.439 43.478 10.11 10.11 0.00 4.41
1860 4688 3.540617 ACCGTTTATCACATATGCTGCA 58.459 40.909 4.13 4.13 0.00 4.41
1861 4689 4.201910 ACAACCGTTTATCACATATGCTGC 60.202 41.667 1.58 0.00 0.00 5.25
1862 4690 5.484173 ACAACCGTTTATCACATATGCTG 57.516 39.130 1.58 0.89 0.00 4.41
1863 4691 6.346096 AGTACAACCGTTTATCACATATGCT 58.654 36.000 1.58 0.00 0.00 3.79
1864 4692 6.292703 GGAGTACAACCGTTTATCACATATGC 60.293 42.308 1.58 0.00 0.00 3.14
1865 4693 6.202188 GGGAGTACAACCGTTTATCACATATG 59.798 42.308 0.00 0.00 0.00 1.78
1866 4694 6.099269 AGGGAGTACAACCGTTTATCACATAT 59.901 38.462 0.00 0.00 0.00 1.78
1867 4695 5.422970 AGGGAGTACAACCGTTTATCACATA 59.577 40.000 0.00 0.00 0.00 2.29
1868 4696 4.224370 AGGGAGTACAACCGTTTATCACAT 59.776 41.667 0.00 0.00 0.00 3.21
1869 4697 3.579586 AGGGAGTACAACCGTTTATCACA 59.420 43.478 0.00 0.00 0.00 3.58
1870 4698 4.081807 AGAGGGAGTACAACCGTTTATCAC 60.082 45.833 0.00 0.00 0.00 3.06
1871 4699 4.081862 CAGAGGGAGTACAACCGTTTATCA 60.082 45.833 0.00 0.00 0.00 2.15
1872 4700 4.081807 ACAGAGGGAGTACAACCGTTTATC 60.082 45.833 0.00 0.00 0.00 1.75
1873 4701 3.836562 ACAGAGGGAGTACAACCGTTTAT 59.163 43.478 0.00 0.00 0.00 1.40
1874 4702 3.233507 ACAGAGGGAGTACAACCGTTTA 58.766 45.455 0.00 0.00 0.00 2.01
1875 4703 2.036862 GACAGAGGGAGTACAACCGTTT 59.963 50.000 0.00 0.00 0.00 3.60
1876 4704 1.617357 GACAGAGGGAGTACAACCGTT 59.383 52.381 0.00 0.00 0.00 4.44
1877 4705 1.254954 GACAGAGGGAGTACAACCGT 58.745 55.000 0.00 0.00 0.00 4.83
1878 4706 0.531200 GGACAGAGGGAGTACAACCG 59.469 60.000 0.00 0.00 0.00 4.44
1879 4707 0.903236 GGGACAGAGGGAGTACAACC 59.097 60.000 0.00 0.00 0.00 3.77
1880 4708 1.640917 TGGGACAGAGGGAGTACAAC 58.359 55.000 0.00 0.00 0.00 3.32
1886 4714 9.711785 ACTAGTGTAGTTATGGGACAGAGGGAG 62.712 48.148 0.00 0.00 37.54 4.30
1887 4715 8.014863 ACTAGTGTAGTTATGGGACAGAGGGA 62.015 46.154 0.00 0.00 37.54 4.20
1888 4716 5.869324 ACTAGTGTAGTTATGGGACAGAGGG 60.869 48.000 0.00 0.00 37.54 4.30
1889 4717 5.067936 CACTAGTGTAGTTATGGGACAGAGG 59.932 48.000 15.06 0.00 38.54 3.69
1890 4718 5.652891 ACACTAGTGTAGTTATGGGACAGAG 59.347 44.000 26.91 0.00 42.47 3.35
1891 4719 5.577100 ACACTAGTGTAGTTATGGGACAGA 58.423 41.667 26.91 0.00 42.47 3.41
1892 4720 5.417894 TGACACTAGTGTAGTTATGGGACAG 59.582 44.000 27.98 0.00 43.90 3.51
1893 4721 5.326900 TGACACTAGTGTAGTTATGGGACA 58.673 41.667 27.98 14.49 45.05 4.02
1894 4722 5.909621 TGACACTAGTGTAGTTATGGGAC 57.090 43.478 27.98 12.10 45.05 4.46
1895 4723 6.921486 TTTGACACTAGTGTAGTTATGGGA 57.079 37.500 27.98 4.89 45.05 4.37
1896 4724 7.360946 GCTTTTTGACACTAGTGTAGTTATGGG 60.361 40.741 27.98 14.54 45.05 4.00
1897 4725 7.519002 GCTTTTTGACACTAGTGTAGTTATGG 58.481 38.462 27.98 15.72 45.05 2.74
1898 4726 7.095774 ACGCTTTTTGACACTAGTGTAGTTATG 60.096 37.037 27.98 17.11 45.05 1.90
1899 4727 6.927381 ACGCTTTTTGACACTAGTGTAGTTAT 59.073 34.615 27.98 4.69 45.05 1.89
1900 4728 6.275335 ACGCTTTTTGACACTAGTGTAGTTA 58.725 36.000 27.98 12.29 45.05 2.24
1901 4729 5.114081 ACGCTTTTTGACACTAGTGTAGTT 58.886 37.500 27.98 5.91 45.05 2.24
1902 4730 4.690122 ACGCTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 14.12 45.05 2.73
1903 4731 4.982916 AGACGCTTTTTGACACTAGTGTAG 59.017 41.667 27.98 20.94 45.05 2.74
1904 4732 4.940463 AGACGCTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
1906 4734 4.795970 AAGACGCTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
1907 4735 5.353938 TGTAAGACGCTTTTTGACACTAGT 58.646 37.500 0.00 0.00 0.00 2.57
1908 4736 5.900339 TGTAAGACGCTTTTTGACACTAG 57.100 39.130 0.00 0.00 0.00 2.57
1909 4737 6.854496 AATGTAAGACGCTTTTTGACACTA 57.146 33.333 0.00 0.00 0.00 2.74
1910 4738 5.751243 AATGTAAGACGCTTTTTGACACT 57.249 34.783 0.00 0.00 0.00 3.55
1911 4739 6.523201 CCATAATGTAAGACGCTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
1912 4740 6.348950 CCCATAATGTAAGACGCTTTTTGACA 60.349 38.462 0.00 0.00 0.00 3.58
1913 4741 6.027749 CCCATAATGTAAGACGCTTTTTGAC 58.972 40.000 0.00 0.00 0.00 3.18
1914 4742 5.941058 TCCCATAATGTAAGACGCTTTTTGA 59.059 36.000 0.00 0.00 0.00 2.69
1915 4743 6.027749 GTCCCATAATGTAAGACGCTTTTTG 58.972 40.000 0.00 0.00 0.00 2.44
1916 4744 5.708230 TGTCCCATAATGTAAGACGCTTTTT 59.292 36.000 0.00 0.00 0.00 1.94
1917 4745 5.250200 TGTCCCATAATGTAAGACGCTTTT 58.750 37.500 0.00 0.00 0.00 2.27
1918 4746 4.839121 TGTCCCATAATGTAAGACGCTTT 58.161 39.130 0.00 0.00 0.00 3.51
1919 4747 4.161565 TCTGTCCCATAATGTAAGACGCTT 59.838 41.667 0.00 0.00 0.00 4.68
1920 4748 3.704566 TCTGTCCCATAATGTAAGACGCT 59.295 43.478 0.00 0.00 0.00 5.07
1921 4749 4.051922 CTCTGTCCCATAATGTAAGACGC 58.948 47.826 0.00 0.00 0.00 5.19
1922 4750 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
1923 4751 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
1924 4752 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
1925 4753 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
1926 4754 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
1927 4755 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
1928 4756 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
1929 4757 4.227197 ACTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
1930 4758 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
1955 4784 2.400399 GGACGATTCACAGACGACAAA 58.600 47.619 0.00 0.00 0.00 2.83
1956 4785 1.664874 CGGACGATTCACAGACGACAA 60.665 52.381 0.00 0.00 0.00 3.18
1958 4787 1.403972 GCGGACGATTCACAGACGAC 61.404 60.000 0.00 0.00 0.00 4.34
1961 4790 0.716108 CTTGCGGACGATTCACAGAC 59.284 55.000 0.00 0.00 0.00 3.51
1963 4792 1.421485 GCTTGCGGACGATTCACAG 59.579 57.895 0.00 0.00 0.00 3.66
1967 4796 2.799540 GACCGCTTGCGGACGATTC 61.800 63.158 35.96 20.64 0.00 2.52
1982 4811 1.443872 CAGTGCTACACGGACGACC 60.444 63.158 0.00 0.00 39.64 4.79
1983 4812 2.087009 GCAGTGCTACACGGACGAC 61.087 63.158 8.18 0.00 39.64 4.34
1984 4813 2.257371 GCAGTGCTACACGGACGA 59.743 61.111 8.18 0.00 39.64 4.20
1985 4814 2.088763 CAGCAGTGCTACACGGACG 61.089 63.158 19.26 0.00 39.64 4.79
1986 4815 0.600255 AACAGCAGTGCTACACGGAC 60.600 55.000 19.26 0.00 39.64 4.79
1987 4816 0.599991 CAACAGCAGTGCTACACGGA 60.600 55.000 19.26 0.00 39.64 4.69
1988 4817 0.599991 TCAACAGCAGTGCTACACGG 60.600 55.000 19.26 7.64 39.64 4.94
1989 4818 1.127397 CATCAACAGCAGTGCTACACG 59.873 52.381 19.26 8.06 39.64 4.49
1990 4819 2.146342 ACATCAACAGCAGTGCTACAC 58.854 47.619 19.26 0.00 36.40 2.90
1991 4820 2.549064 ACATCAACAGCAGTGCTACA 57.451 45.000 19.26 1.91 36.40 2.74
1992 4821 5.551760 AATAACATCAACAGCAGTGCTAC 57.448 39.130 19.26 0.00 36.40 3.58
1993 4822 6.016360 ACAAAATAACATCAACAGCAGTGCTA 60.016 34.615 19.26 1.78 36.40 3.49
1994 4823 5.221303 ACAAAATAACATCAACAGCAGTGCT 60.221 36.000 13.14 13.14 40.77 4.40
1995 4824 4.984161 ACAAAATAACATCAACAGCAGTGC 59.016 37.500 7.13 7.13 0.00 4.40
1996 4825 6.207928 TCACAAAATAACATCAACAGCAGTG 58.792 36.000 0.00 0.00 0.00 3.66
2053 4978 2.031245 TGCAACAGTAAATTCGCAGTGG 60.031 45.455 0.00 0.00 0.00 4.00
2176 5369 5.574830 GCTAATACTGAGAATATCCACGCAG 59.425 44.000 0.00 0.00 39.21 5.18
2215 5411 6.749923 AATGAGATTGAAAGCAGTAAGGAC 57.250 37.500 0.00 0.00 0.00 3.85
2232 5527 8.651389 CCAGTAATGGATAAGGTCTAAATGAGA 58.349 37.037 2.11 0.00 0.00 3.27
2377 5808 4.759782 ACTCCAGGATCAAACATAGAACG 58.240 43.478 0.00 0.00 0.00 3.95
2383 6619 4.895297 ACAAACAACTCCAGGATCAAACAT 59.105 37.500 0.00 0.00 0.00 2.71
2411 6647 3.003480 GGTGATGCAACCTGTAAGAGAC 58.997 50.000 0.00 0.00 37.24 3.36
3056 7451 6.481644 GGCTTTCCATTGATACTAGAAGAGTG 59.518 42.308 0.00 0.00 39.39 3.51
3132 7527 2.516930 AAAGCACGCACCACAGCT 60.517 55.556 0.00 0.00 39.37 4.24
3146 7541 1.536766 TCTGCCATTCACAAGCGAAAG 59.463 47.619 0.00 0.00 0.00 2.62
3372 7780 3.213206 TCAACTCTTCCACAAGCACAT 57.787 42.857 0.00 0.00 0.00 3.21
3390 7798 0.953727 GCTCCATGTGCAAGTGTTCA 59.046 50.000 0.00 0.00 0.00 3.18
3397 7805 0.401356 TTCTCCTGCTCCATGTGCAA 59.599 50.000 11.00 0.00 40.13 4.08
3398 7806 0.035725 CTTCTCCTGCTCCATGTGCA 60.036 55.000 9.72 9.72 38.81 4.57
3459 7889 2.169832 TCTGCTTCTTCAGGAAACCG 57.830 50.000 0.00 0.00 34.91 4.44
3569 7999 4.494091 TGGGATCAAACCAAAGCAAAAA 57.506 36.364 0.00 0.00 34.44 1.94
3577 8007 5.602145 AGAATTGAACTTGGGATCAAACCAA 59.398 36.000 0.00 0.00 45.25 3.67
3687 8117 1.847818 TGTCGAACTGAAACCACTCG 58.152 50.000 0.00 0.00 0.00 4.18
3713 8143 3.726557 TTACGGAGGGAGTACTGAAGA 57.273 47.619 0.00 0.00 0.00 2.87
3714 8144 3.762823 AGTTTACGGAGGGAGTACTGAAG 59.237 47.826 0.00 0.00 0.00 3.02
3717 8147 5.848833 ATTAGTTTACGGAGGGAGTACTG 57.151 43.478 0.00 0.00 0.00 2.74
3718 8148 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
3719 8149 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3720 8150 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3721 8151 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
3722 8152 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
3723 8153 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
3724 8154 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
3725 8155 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.