Multiple sequence alignment - TraesCS2D01G097000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G097000 chr2D 100.000 3464 0 0 1 3464 49257339 49253876 0.000000e+00 6397.0
1 TraesCS2D01G097000 chr2D 92.135 534 26 5 2667 3199 47411973 47412491 0.000000e+00 739.0
2 TraesCS2D01G097000 chr2D 95.146 103 5 0 3183 3285 47414893 47414995 2.770000e-36 163.0
3 TraesCS2D01G097000 chr2D 93.023 43 1 2 195 236 34263785 34263744 1.040000e-05 62.1
4 TraesCS2D01G097000 chr2A 86.585 2855 230 47 713 3464 50915891 50918695 0.000000e+00 3009.0
5 TraesCS2D01G097000 chr2A 89.905 1575 111 19 1637 3170 51540610 51539043 0.000000e+00 1984.0
6 TraesCS2D01G097000 chr2A 85.180 722 61 22 2282 2985 50923415 50924108 0.000000e+00 699.0
7 TraesCS2D01G097000 chr2A 92.169 332 26 0 1185 1516 51540990 51540659 1.460000e-128 470.0
8 TraesCS2D01G097000 chr2A 93.137 306 10 3 2981 3285 50956199 50956494 4.100000e-119 438.0
9 TraesCS2D01G097000 chr2A 90.667 150 10 3 763 908 51541207 51541058 2.730000e-46 196.0
10 TraesCS2D01G097000 chr2B 85.917 2542 216 50 713 3172 75606317 75608798 0.000000e+00 2580.0
11 TraesCS2D01G097000 chr2B 90.773 1604 116 16 1204 2783 76906027 76904432 0.000000e+00 2113.0
12 TraesCS2D01G097000 chr2B 89.207 1186 115 7 1490 2673 77770843 77772017 0.000000e+00 1469.0
13 TraesCS2D01G097000 chr2B 92.487 772 36 6 2708 3464 77772105 77772869 0.000000e+00 1085.0
14 TraesCS2D01G097000 chr2B 85.252 556 78 4 1210 1764 74794145 74794697 1.400000e-158 569.0
15 TraesCS2D01G097000 chr2B 92.675 314 19 2 1185 1494 77762114 77762427 1.900000e-122 449.0
16 TraesCS2D01G097000 chr2B 73.513 1227 286 30 1247 2453 29109881 29108674 2.470000e-116 429.0
17 TraesCS2D01G097000 chr2B 89.535 344 16 5 3134 3464 76903831 76903495 5.350000e-113 418.0
18 TraesCS2D01G097000 chr2B 85.240 271 10 13 684 936 77761852 77762110 5.740000e-63 252.0
19 TraesCS2D01G097000 chr2B 99.020 102 1 0 3027 3128 76904406 76904305 2.120000e-42 183.0
20 TraesCS2D01G097000 chr2B 93.162 117 7 1 3170 3285 75608880 75608996 1.650000e-38 171.0
21 TraesCS2D01G097000 chr2B 81.545 233 16 11 657 882 76906249 76906037 2.140000e-37 167.0
22 TraesCS2D01G097000 chr6A 93.103 261 18 0 1374 1634 613644737 613644997 1.950000e-102 383.0
23 TraesCS2D01G097000 chr5D 79.730 148 18 10 47 192 33019452 33019589 2.850000e-16 97.1
24 TraesCS2D01G097000 chr5D 81.944 72 9 3 55 125 459069598 459069530 1.340000e-04 58.4
25 TraesCS2D01G097000 chr7A 75.576 217 37 15 47 254 379033256 379033047 3.680000e-15 93.5
26 TraesCS2D01G097000 chr1D 80.000 105 19 2 22 126 491810158 491810260 3.710000e-10 76.8
27 TraesCS2D01G097000 chr4A 73.711 194 36 12 78 267 76182386 76182568 1.040000e-05 62.1
28 TraesCS2D01G097000 chrUn 100.000 28 0 0 99 126 28408754 28408727 6.000000e-03 52.8
29 TraesCS2D01G097000 chr3D 100.000 28 0 0 85 112 553727485 553727458 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G097000 chr2D 49253876 49257339 3463 True 6397.000000 6397 100.000000 1 3464 1 chr2D.!!$R2 3463
1 TraesCS2D01G097000 chr2D 47411973 47414995 3022 False 451.000000 739 93.640500 2667 3285 2 chr2D.!!$F1 618
2 TraesCS2D01G097000 chr2A 50915891 50918695 2804 False 3009.000000 3009 86.585000 713 3464 1 chr2A.!!$F1 2751
3 TraesCS2D01G097000 chr2A 51539043 51541207 2164 True 883.333333 1984 90.913667 763 3170 3 chr2A.!!$R1 2407
4 TraesCS2D01G097000 chr2A 50923415 50924108 693 False 699.000000 699 85.180000 2282 2985 1 chr2A.!!$F2 703
5 TraesCS2D01G097000 chr2B 75606317 75608996 2679 False 1375.500000 2580 89.539500 713 3285 2 chr2B.!!$F2 2572
6 TraesCS2D01G097000 chr2B 77770843 77772869 2026 False 1277.000000 1469 90.847000 1490 3464 2 chr2B.!!$F4 1974
7 TraesCS2D01G097000 chr2B 76903495 76906249 2754 True 720.250000 2113 90.218250 657 3464 4 chr2B.!!$R2 2807
8 TraesCS2D01G097000 chr2B 74794145 74794697 552 False 569.000000 569 85.252000 1210 1764 1 chr2B.!!$F1 554
9 TraesCS2D01G097000 chr2B 29108674 29109881 1207 True 429.000000 429 73.513000 1247 2453 1 chr2B.!!$R1 1206
10 TraesCS2D01G097000 chr2B 77761852 77762427 575 False 350.500000 449 88.957500 684 1494 2 chr2B.!!$F3 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 678 0.032678 CGTGCGGCATAGATCTTCCT 59.967 55.000 5.72 0.0 0.0 3.36 F
1182 1278 1.003233 GCTGGTCCTCCGAGCTTTT 60.003 57.895 0.00 0.0 37.4 2.27 F
1519 1644 0.533755 GCATCTGATTGGGTCCTCGG 60.534 60.000 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1624 0.178767 CGAGGACCCAATCAGATGCA 59.821 55.000 0.00 0.0 0.0 3.96 R
2072 2209 2.422479 TCTAAATCGCAGTGCTCGTACT 59.578 45.455 14.33 0.0 0.0 2.73 R
3213 6413 1.162698 ACACACATGCTGACAGATGC 58.837 50.000 6.65 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.830940 AAATCGCAAATTGAAAATATGCTCA 57.169 28.000 0.00 0.00 34.93 4.26
35 36 8.428186 AAATCGCAAATTGAAAATATGCTCAT 57.572 26.923 0.00 0.00 34.93 2.90
36 37 6.815672 TCGCAAATTGAAAATATGCTCATG 57.184 33.333 0.00 0.00 34.93 3.07
37 38 5.749588 TCGCAAATTGAAAATATGCTCATGG 59.250 36.000 0.00 0.00 34.93 3.66
38 39 5.521010 CGCAAATTGAAAATATGCTCATGGT 59.479 36.000 0.00 0.00 34.93 3.55
39 40 6.036300 CGCAAATTGAAAATATGCTCATGGTT 59.964 34.615 0.00 0.00 34.93 3.67
40 41 7.184106 GCAAATTGAAAATATGCTCATGGTTG 58.816 34.615 0.00 0.00 34.29 3.77
41 42 7.148373 GCAAATTGAAAATATGCTCATGGTTGT 60.148 33.333 0.00 0.00 34.29 3.32
42 43 9.368674 CAAATTGAAAATATGCTCATGGTTGTA 57.631 29.630 0.00 0.00 0.00 2.41
43 44 9.590451 AAATTGAAAATATGCTCATGGTTGTAG 57.410 29.630 0.00 0.00 0.00 2.74
44 45 7.936496 TTGAAAATATGCTCATGGTTGTAGA 57.064 32.000 0.00 0.00 0.00 2.59
45 46 7.558161 TGAAAATATGCTCATGGTTGTAGAG 57.442 36.000 0.00 0.00 0.00 2.43
46 47 7.337938 TGAAAATATGCTCATGGTTGTAGAGA 58.662 34.615 0.00 0.00 0.00 3.10
47 48 7.994911 TGAAAATATGCTCATGGTTGTAGAGAT 59.005 33.333 0.00 0.00 0.00 2.75
48 49 8.757982 AAAATATGCTCATGGTTGTAGAGATT 57.242 30.769 0.00 0.00 0.00 2.40
49 50 7.741027 AATATGCTCATGGTTGTAGAGATTG 57.259 36.000 0.00 0.00 0.00 2.67
50 51 4.558226 TGCTCATGGTTGTAGAGATTGT 57.442 40.909 0.00 0.00 0.00 2.71
51 52 4.910195 TGCTCATGGTTGTAGAGATTGTT 58.090 39.130 0.00 0.00 0.00 2.83
52 53 4.937620 TGCTCATGGTTGTAGAGATTGTTC 59.062 41.667 0.00 0.00 0.00 3.18
53 54 4.937620 GCTCATGGTTGTAGAGATTGTTCA 59.062 41.667 0.00 0.00 0.00 3.18
54 55 5.587844 GCTCATGGTTGTAGAGATTGTTCAT 59.412 40.000 0.00 0.00 0.00 2.57
55 56 6.457934 GCTCATGGTTGTAGAGATTGTTCATG 60.458 42.308 0.00 0.00 0.00 3.07
56 57 6.710278 TCATGGTTGTAGAGATTGTTCATGA 58.290 36.000 0.00 0.00 36.96 3.07
57 58 7.167535 TCATGGTTGTAGAGATTGTTCATGAA 58.832 34.615 3.38 3.38 36.55 2.57
58 59 7.830697 TCATGGTTGTAGAGATTGTTCATGAAT 59.169 33.333 12.12 0.00 36.55 2.57
59 60 8.464404 CATGGTTGTAGAGATTGTTCATGAATT 58.536 33.333 12.12 0.00 33.46 2.17
60 61 8.408043 TGGTTGTAGAGATTGTTCATGAATTT 57.592 30.769 12.12 0.00 0.00 1.82
61 62 9.513906 TGGTTGTAGAGATTGTTCATGAATTTA 57.486 29.630 12.12 0.52 0.00 1.40
73 74 9.487790 TTGTTCATGAATTTAAAAGATGTTCCC 57.512 29.630 12.12 0.00 0.00 3.97
74 75 8.869109 TGTTCATGAATTTAAAAGATGTTCCCT 58.131 29.630 12.12 0.00 0.00 4.20
146 147 7.872113 AAAATGGCCACAAATTTGTAAAAGA 57.128 28.000 22.87 7.46 39.91 2.52
147 148 7.872113 AAATGGCCACAAATTTGTAAAAGAA 57.128 28.000 22.87 8.03 39.91 2.52
148 149 8.462589 AAATGGCCACAAATTTGTAAAAGAAT 57.537 26.923 22.87 9.80 39.91 2.40
149 150 9.566432 AAATGGCCACAAATTTGTAAAAGAATA 57.434 25.926 22.87 5.79 39.91 1.75
150 151 9.737844 AATGGCCACAAATTTGTAAAAGAATAT 57.262 25.926 22.87 7.62 39.91 1.28
151 152 8.545229 TGGCCACAAATTTGTAAAAGAATATG 57.455 30.769 22.87 7.23 39.91 1.78
152 153 8.153550 TGGCCACAAATTTGTAAAAGAATATGT 58.846 29.630 22.87 0.00 39.91 2.29
153 154 8.998377 GGCCACAAATTTGTAAAAGAATATGTT 58.002 29.630 22.87 0.00 39.91 2.71
215 216 8.945481 ATGTTCATGAATTTGAAAGTTGTTCA 57.055 26.923 12.12 0.00 37.36 3.18
216 217 8.945481 TGTTCATGAATTTGAAAGTTGTTCAT 57.055 26.923 12.12 0.08 39.39 2.57
223 224 9.597170 TGAATTTGAAAGTTGTTCATGATTTCA 57.403 25.926 14.50 14.50 37.92 2.69
229 230 9.212641 TGAAAGTTGTTCATGATTTCAAAAACA 57.787 25.926 15.64 4.16 37.04 2.83
231 232 9.991388 AAAGTTGTTCATGATTTCAAAAACATG 57.009 25.926 15.63 15.63 45.20 3.21
232 233 8.721019 AGTTGTTCATGATTTCAAAAACATGT 57.279 26.923 19.05 0.00 44.58 3.21
233 234 9.165035 AGTTGTTCATGATTTCAAAAACATGTT 57.835 25.926 19.05 4.92 44.58 2.71
234 235 9.424659 GTTGTTCATGATTTCAAAAACATGTTC 57.575 29.630 12.39 14.87 44.58 3.18
235 236 8.713737 TGTTCATGATTTCAAAAACATGTTCA 57.286 26.923 12.39 16.42 44.58 3.18
236 237 9.327628 TGTTCATGATTTCAAAAACATGTTCAT 57.672 25.926 12.39 5.57 44.58 2.57
237 238 9.588774 GTTCATGATTTCAAAAACATGTTCATG 57.411 29.630 19.76 19.76 44.58 3.07
238 239 8.890124 TCATGATTTCAAAAACATGTTCATGT 57.110 26.923 22.69 11.97 44.58 3.21
239 240 9.978044 TCATGATTTCAAAAACATGTTCATGTA 57.022 25.926 22.69 12.85 44.58 2.29
273 274 8.945481 ATGTTCATGATTTCAAAAACAGTTCA 57.055 26.923 0.00 0.00 37.58 3.18
274 275 8.183830 TGTTCATGATTTCAAAAACAGTTCAC 57.816 30.769 0.00 0.00 32.82 3.18
275 276 7.816513 TGTTCATGATTTCAAAAACAGTTCACA 59.183 29.630 0.00 0.00 32.82 3.58
276 277 8.655092 GTTCATGATTTCAAAAACAGTTCACAA 58.345 29.630 0.00 0.00 0.00 3.33
277 278 8.768957 TCATGATTTCAAAAACAGTTCACAAA 57.231 26.923 0.00 0.00 0.00 2.83
278 279 9.381033 TCATGATTTCAAAAACAGTTCACAAAT 57.619 25.926 0.00 0.00 0.00 2.32
279 280 9.991388 CATGATTTCAAAAACAGTTCACAAATT 57.009 25.926 0.00 0.00 0.00 1.82
281 282 9.212641 TGATTTCAAAAACAGTTCACAAATTCA 57.787 25.926 0.00 0.00 0.00 2.57
313 314 7.904094 TGTTGTTGAGTTTGAAATATGTTTGC 58.096 30.769 0.00 0.00 0.00 3.68
314 315 7.547019 TGTTGTTGAGTTTGAAATATGTTTGCA 59.453 29.630 0.00 0.00 0.00 4.08
315 316 8.386606 GTTGTTGAGTTTGAAATATGTTTGCAA 58.613 29.630 0.00 0.00 0.00 4.08
316 317 8.484641 TGTTGAGTTTGAAATATGTTTGCAAA 57.515 26.923 8.05 8.05 0.00 3.68
317 318 9.107177 TGTTGAGTTTGAAATATGTTTGCAAAT 57.893 25.926 16.21 2.51 32.44 2.32
318 319 9.934190 GTTGAGTTTGAAATATGTTTGCAAATT 57.066 25.926 16.21 4.81 32.44 1.82
319 320 9.932699 TTGAGTTTGAAATATGTTTGCAAATTG 57.067 25.926 16.21 0.00 32.44 2.32
320 321 9.322773 TGAGTTTGAAATATGTTTGCAAATTGA 57.677 25.926 16.21 3.75 32.44 2.57
359 360 9.527157 AAAATGAAAAAGGAAAAAGGGAAAAGA 57.473 25.926 0.00 0.00 0.00 2.52
360 361 9.527157 AAATGAAAAAGGAAAAAGGGAAAAGAA 57.473 25.926 0.00 0.00 0.00 2.52
361 362 9.527157 AATGAAAAAGGAAAAAGGGAAAAGAAA 57.473 25.926 0.00 0.00 0.00 2.52
362 363 9.699410 ATGAAAAAGGAAAAAGGGAAAAGAAAT 57.301 25.926 0.00 0.00 0.00 2.17
481 482 4.937201 AAAACCAGTTCAGGGAATGTTC 57.063 40.909 0.00 0.00 0.00 3.18
482 483 3.884037 AACCAGTTCAGGGAATGTTCT 57.116 42.857 0.00 0.00 0.00 3.01
483 484 4.993705 AACCAGTTCAGGGAATGTTCTA 57.006 40.909 0.00 0.00 0.00 2.10
484 485 4.559862 ACCAGTTCAGGGAATGTTCTAG 57.440 45.455 0.00 0.00 0.00 2.43
485 486 4.168101 ACCAGTTCAGGGAATGTTCTAGA 58.832 43.478 0.00 0.00 0.00 2.43
486 487 4.597507 ACCAGTTCAGGGAATGTTCTAGAA 59.402 41.667 0.00 0.00 0.00 2.10
487 488 4.938226 CCAGTTCAGGGAATGTTCTAGAAC 59.062 45.833 25.73 25.73 41.50 3.01
488 489 4.938226 CAGTTCAGGGAATGTTCTAGAACC 59.062 45.833 28.43 15.61 40.46 3.62
489 490 4.846940 AGTTCAGGGAATGTTCTAGAACCT 59.153 41.667 28.43 18.62 40.46 3.50
490 491 5.310857 AGTTCAGGGAATGTTCTAGAACCTT 59.689 40.000 28.43 24.93 40.46 3.50
491 492 5.422214 TCAGGGAATGTTCTAGAACCTTC 57.578 43.478 30.46 30.46 41.83 3.46
492 493 4.081642 TCAGGGAATGTTCTAGAACCTTCG 60.082 45.833 30.67 22.77 42.77 3.79
493 494 2.937149 GGGAATGTTCTAGAACCTTCGC 59.063 50.000 33.61 33.61 44.48 4.70
494 495 3.596214 GGAATGTTCTAGAACCTTCGCA 58.404 45.455 30.67 16.65 42.77 5.10
495 496 4.000988 GGAATGTTCTAGAACCTTCGCAA 58.999 43.478 30.67 16.04 42.77 4.85
496 497 4.454504 GGAATGTTCTAGAACCTTCGCAAA 59.545 41.667 30.67 15.48 42.77 3.68
497 498 5.048991 GGAATGTTCTAGAACCTTCGCAAAA 60.049 40.000 30.67 14.92 42.77 2.44
498 499 4.806342 TGTTCTAGAACCTTCGCAAAAC 57.194 40.909 28.43 4.68 40.46 2.43
499 500 3.562557 TGTTCTAGAACCTTCGCAAAACC 59.437 43.478 28.43 3.88 40.46 3.27
500 501 2.409975 TCTAGAACCTTCGCAAAACCG 58.590 47.619 0.00 0.00 0.00 4.44
501 502 1.463444 CTAGAACCTTCGCAAAACCGG 59.537 52.381 0.00 0.00 0.00 5.28
502 503 0.464916 AGAACCTTCGCAAAACCGGT 60.465 50.000 0.00 0.00 0.00 5.28
503 504 0.317519 GAACCTTCGCAAAACCGGTG 60.318 55.000 8.52 0.00 0.00 4.94
504 505 1.730451 AACCTTCGCAAAACCGGTGG 61.730 55.000 8.52 4.50 0.00 4.61
505 506 2.642700 CTTCGCAAAACCGGTGGG 59.357 61.111 8.52 4.23 40.11 4.61
506 507 2.907917 TTCGCAAAACCGGTGGGG 60.908 61.111 8.52 9.99 43.62 4.96
507 508 3.417167 TTCGCAAAACCGGTGGGGA 62.417 57.895 8.52 12.41 39.97 4.81
508 509 2.905935 TTCGCAAAACCGGTGGGGAA 62.906 55.000 21.77 21.77 39.97 3.97
509 510 2.914908 CGCAAAACCGGTGGGGAAG 61.915 63.158 8.52 0.00 39.97 3.46
510 511 1.529713 GCAAAACCGGTGGGGAAGA 60.530 57.895 8.52 0.00 39.97 2.87
511 512 1.110518 GCAAAACCGGTGGGGAAGAA 61.111 55.000 8.52 0.00 39.97 2.52
512 513 1.404843 CAAAACCGGTGGGGAAGAAA 58.595 50.000 8.52 0.00 39.97 2.52
513 514 1.757699 CAAAACCGGTGGGGAAGAAAA 59.242 47.619 8.52 0.00 39.97 2.29
514 515 1.405872 AAACCGGTGGGGAAGAAAAC 58.594 50.000 8.52 0.00 39.97 2.43
515 516 0.468585 AACCGGTGGGGAAGAAAACC 60.469 55.000 8.52 0.00 39.97 3.27
517 518 4.914128 GGTGGGGAAGAAAACCGT 57.086 55.556 0.00 0.00 0.00 4.83
518 519 2.337361 GGTGGGGAAGAAAACCGTG 58.663 57.895 0.00 0.00 0.00 4.94
519 520 0.179012 GGTGGGGAAGAAAACCGTGA 60.179 55.000 0.00 0.00 0.00 4.35
520 521 1.682740 GTGGGGAAGAAAACCGTGAA 58.317 50.000 0.00 0.00 0.00 3.18
521 522 2.235891 GTGGGGAAGAAAACCGTGAAT 58.764 47.619 0.00 0.00 0.00 2.57
522 523 2.030274 GTGGGGAAGAAAACCGTGAATG 60.030 50.000 0.00 0.00 0.00 2.67
523 524 1.544246 GGGGAAGAAAACCGTGAATGG 59.456 52.381 0.00 0.00 0.00 3.16
524 525 1.544246 GGGAAGAAAACCGTGAATGGG 59.456 52.381 0.00 0.00 0.00 4.00
525 526 1.067846 GGAAGAAAACCGTGAATGGGC 60.068 52.381 0.00 0.00 0.00 5.36
526 527 0.966179 AAGAAAACCGTGAATGGGCC 59.034 50.000 0.00 0.00 0.00 5.80
527 528 1.211709 GAAAACCGTGAATGGGCCG 59.788 57.895 0.00 0.00 0.00 6.13
528 529 1.228306 AAAACCGTGAATGGGCCGA 60.228 52.632 0.00 0.00 0.00 5.54
529 530 1.520600 AAAACCGTGAATGGGCCGAC 61.521 55.000 0.00 0.00 0.00 4.79
530 531 3.912745 AACCGTGAATGGGCCGACC 62.913 63.158 0.00 0.00 40.81 4.79
540 541 2.361230 GGCCGACCCAAAAGGAGG 60.361 66.667 0.00 0.00 39.89 4.30
541 542 2.754375 GCCGACCCAAAAGGAGGA 59.246 61.111 0.00 0.00 38.64 3.71
542 543 1.303282 GCCGACCCAAAAGGAGGAT 59.697 57.895 0.00 0.00 38.64 3.24
543 544 0.748367 GCCGACCCAAAAGGAGGATC 60.748 60.000 0.00 0.00 38.64 3.36
544 545 0.462047 CCGACCCAAAAGGAGGATCG 60.462 60.000 0.00 0.00 38.64 3.69
545 546 0.535335 CGACCCAAAAGGAGGATCGA 59.465 55.000 0.00 0.00 39.89 3.59
546 547 1.066430 CGACCCAAAAGGAGGATCGAA 60.066 52.381 0.00 0.00 39.89 3.71
547 548 2.357075 GACCCAAAAGGAGGATCGAAC 58.643 52.381 0.00 0.00 39.89 3.95
548 549 1.338769 ACCCAAAAGGAGGATCGAACG 60.339 52.381 0.00 0.00 39.89 3.95
549 550 1.066430 CCCAAAAGGAGGATCGAACGA 60.066 52.381 0.00 0.00 38.24 3.85
550 551 2.420129 CCCAAAAGGAGGATCGAACGAT 60.420 50.000 9.46 9.46 38.24 3.73
551 552 2.609459 CCAAAAGGAGGATCGAACGATG 59.391 50.000 14.33 0.00 34.60 3.84
552 553 2.604046 AAAGGAGGATCGAACGATGG 57.396 50.000 14.33 0.00 34.60 3.51
553 554 1.776662 AAGGAGGATCGAACGATGGA 58.223 50.000 14.33 0.00 34.60 3.41
554 555 1.033574 AGGAGGATCGAACGATGGAC 58.966 55.000 14.33 5.02 34.60 4.02
555 556 0.317938 GGAGGATCGAACGATGGACG 60.318 60.000 14.33 0.00 42.04 4.79
556 557 0.661552 GAGGATCGAACGATGGACGA 59.338 55.000 14.33 0.00 45.77 4.20
557 558 0.663688 AGGATCGAACGATGGACGAG 59.336 55.000 14.33 0.00 45.77 4.18
558 559 0.661552 GGATCGAACGATGGACGAGA 59.338 55.000 14.33 0.00 45.77 4.04
559 560 1.334239 GGATCGAACGATGGACGAGAG 60.334 57.143 14.33 0.00 45.77 3.20
560 561 1.598132 GATCGAACGATGGACGAGAGA 59.402 52.381 14.33 0.00 45.77 3.10
561 562 1.007580 TCGAACGATGGACGAGAGAG 58.992 55.000 0.00 0.00 45.77 3.20
562 563 0.590230 CGAACGATGGACGAGAGAGC 60.590 60.000 0.00 0.00 45.77 4.09
563 564 0.736053 GAACGATGGACGAGAGAGCT 59.264 55.000 0.00 0.00 45.77 4.09
564 565 1.941294 GAACGATGGACGAGAGAGCTA 59.059 52.381 0.00 0.00 45.77 3.32
565 566 1.588674 ACGATGGACGAGAGAGCTAG 58.411 55.000 0.00 0.00 45.77 3.42
566 567 0.871722 CGATGGACGAGAGAGCTAGG 59.128 60.000 0.00 0.00 45.77 3.02
567 568 1.243902 GATGGACGAGAGAGCTAGGG 58.756 60.000 0.00 0.00 0.00 3.53
568 569 0.825840 ATGGACGAGAGAGCTAGGGC 60.826 60.000 0.00 0.00 39.06 5.19
569 570 1.454111 GGACGAGAGAGCTAGGGCA 60.454 63.158 0.00 0.00 41.70 5.36
570 571 0.825840 GGACGAGAGAGCTAGGGCAT 60.826 60.000 0.00 0.00 41.70 4.40
571 572 0.313672 GACGAGAGAGCTAGGGCATG 59.686 60.000 0.00 0.00 41.70 4.06
572 573 0.106469 ACGAGAGAGCTAGGGCATGA 60.106 55.000 0.00 0.00 41.70 3.07
573 574 0.313672 CGAGAGAGCTAGGGCATGAC 59.686 60.000 0.00 0.00 41.70 3.06
574 575 1.407936 GAGAGAGCTAGGGCATGACA 58.592 55.000 0.00 0.00 41.70 3.58
575 576 1.340889 GAGAGAGCTAGGGCATGACAG 59.659 57.143 0.00 0.00 41.70 3.51
576 577 0.249826 GAGAGCTAGGGCATGACAGC 60.250 60.000 0.00 0.79 41.70 4.40
577 578 0.690411 AGAGCTAGGGCATGACAGCT 60.690 55.000 13.02 13.02 46.71 4.24
578 579 1.043816 GAGCTAGGGCATGACAGCTA 58.956 55.000 13.13 0.00 44.17 3.32
579 580 1.414181 GAGCTAGGGCATGACAGCTAA 59.586 52.381 13.13 0.00 44.17 3.09
580 581 2.038295 GAGCTAGGGCATGACAGCTAAT 59.962 50.000 13.13 0.00 44.17 1.73
581 582 2.441001 AGCTAGGGCATGACAGCTAATT 59.559 45.455 11.58 0.00 42.41 1.40
582 583 2.551459 GCTAGGGCATGACAGCTAATTG 59.449 50.000 0.00 0.00 38.54 2.32
583 584 2.062971 AGGGCATGACAGCTAATTGG 57.937 50.000 0.00 0.00 34.17 3.16
584 585 1.035139 GGGCATGACAGCTAATTGGG 58.965 55.000 0.00 0.00 34.17 4.12
585 586 0.386838 GGCATGACAGCTAATTGGGC 59.613 55.000 0.00 0.00 34.17 5.36
586 587 0.386838 GCATGACAGCTAATTGGGCC 59.613 55.000 0.00 0.00 0.00 5.80
587 588 0.664761 CATGACAGCTAATTGGGCCG 59.335 55.000 0.00 0.00 0.00 6.13
588 589 0.546122 ATGACAGCTAATTGGGCCGA 59.454 50.000 0.00 0.00 0.00 5.54
589 590 0.107703 TGACAGCTAATTGGGCCGAG 60.108 55.000 0.00 0.00 0.00 4.63
590 591 1.440145 GACAGCTAATTGGGCCGAGC 61.440 60.000 10.55 10.55 35.07 5.03
591 592 1.153086 CAGCTAATTGGGCCGAGCT 60.153 57.895 14.22 14.22 46.08 4.09
592 593 1.147153 AGCTAATTGGGCCGAGCTC 59.853 57.895 14.22 2.73 41.40 4.09
593 594 1.153168 GCTAATTGGGCCGAGCTCA 60.153 57.895 15.40 0.00 37.19 4.26
594 595 1.440145 GCTAATTGGGCCGAGCTCAC 61.440 60.000 15.40 4.74 39.49 3.51
595 596 1.153449 TAATTGGGCCGAGCTCACG 60.153 57.895 15.40 3.81 39.49 4.35
596 597 1.895020 TAATTGGGCCGAGCTCACGT 61.895 55.000 15.40 0.00 39.49 4.49
597 598 1.895020 AATTGGGCCGAGCTCACGTA 61.895 55.000 15.40 0.00 39.49 3.57
598 599 2.298158 ATTGGGCCGAGCTCACGTAG 62.298 60.000 15.40 0.00 39.49 3.51
606 607 4.436998 GCTCACGTAGCCTGGCGT 62.437 66.667 13.96 2.00 46.25 5.68
607 608 2.261671 CTCACGTAGCCTGGCGTT 59.738 61.111 13.96 0.00 39.48 4.84
608 609 1.374252 CTCACGTAGCCTGGCGTTT 60.374 57.895 13.96 0.00 39.48 3.60
609 610 0.949105 CTCACGTAGCCTGGCGTTTT 60.949 55.000 13.96 0.00 39.48 2.43
610 611 0.533308 TCACGTAGCCTGGCGTTTTT 60.533 50.000 13.96 0.00 39.48 1.94
611 612 0.385473 CACGTAGCCTGGCGTTTTTG 60.385 55.000 13.96 4.56 39.48 2.44
612 613 1.209127 CGTAGCCTGGCGTTTTTGG 59.791 57.895 13.96 0.00 0.00 3.28
613 614 1.584495 GTAGCCTGGCGTTTTTGGG 59.416 57.895 13.96 0.00 0.00 4.12
614 615 1.605165 TAGCCTGGCGTTTTTGGGG 60.605 57.895 13.96 0.00 0.00 4.96
615 616 2.360439 TAGCCTGGCGTTTTTGGGGT 62.360 55.000 13.96 0.00 0.00 4.95
616 617 3.047735 CCTGGCGTTTTTGGGGTC 58.952 61.111 0.00 0.00 0.00 4.46
617 618 1.530655 CCTGGCGTTTTTGGGGTCT 60.531 57.895 0.00 0.00 0.00 3.85
618 619 0.250989 CCTGGCGTTTTTGGGGTCTA 60.251 55.000 0.00 0.00 0.00 2.59
619 620 0.879090 CTGGCGTTTTTGGGGTCTAC 59.121 55.000 0.00 0.00 0.00 2.59
620 621 0.475044 TGGCGTTTTTGGGGTCTACT 59.525 50.000 0.00 0.00 0.00 2.57
621 622 1.698532 TGGCGTTTTTGGGGTCTACTA 59.301 47.619 0.00 0.00 0.00 1.82
622 623 2.306512 TGGCGTTTTTGGGGTCTACTAT 59.693 45.455 0.00 0.00 0.00 2.12
623 624 3.518705 TGGCGTTTTTGGGGTCTACTATA 59.481 43.478 0.00 0.00 0.00 1.31
624 625 4.164604 TGGCGTTTTTGGGGTCTACTATAT 59.835 41.667 0.00 0.00 0.00 0.86
625 626 4.753610 GGCGTTTTTGGGGTCTACTATATC 59.246 45.833 0.00 0.00 0.00 1.63
626 627 4.753610 GCGTTTTTGGGGTCTACTATATCC 59.246 45.833 0.00 0.00 0.00 2.59
627 628 5.303165 CGTTTTTGGGGTCTACTATATCCC 58.697 45.833 0.00 0.00 39.22 3.85
653 654 4.475135 GGCCTCCGCTTCCAGGTC 62.475 72.222 0.00 0.00 34.44 3.85
654 655 3.706373 GCCTCCGCTTCCAGGTCA 61.706 66.667 0.00 0.00 31.65 4.02
655 656 3.068881 CCTCCGCTTCCAGGTCAA 58.931 61.111 0.00 0.00 0.00 3.18
674 675 1.951130 CGCGTGCGGCATAGATCTT 60.951 57.895 5.72 0.00 43.84 2.40
677 678 0.032678 CGTGCGGCATAGATCTTCCT 59.967 55.000 5.72 0.00 0.00 3.36
678 679 1.789506 GTGCGGCATAGATCTTCCTC 58.210 55.000 5.72 0.00 0.00 3.71
679 680 1.342819 GTGCGGCATAGATCTTCCTCT 59.657 52.381 5.72 0.00 0.00 3.69
681 682 2.036475 TGCGGCATAGATCTTCCTCTTC 59.964 50.000 0.00 0.00 0.00 2.87
683 684 2.896685 CGGCATAGATCTTCCTCTTCCT 59.103 50.000 0.00 0.00 0.00 3.36
684 685 3.056891 CGGCATAGATCTTCCTCTTCCTC 60.057 52.174 0.00 0.00 0.00 3.71
685 686 4.159557 GGCATAGATCTTCCTCTTCCTCT 58.840 47.826 0.00 0.00 0.00 3.69
686 687 4.592778 GGCATAGATCTTCCTCTTCCTCTT 59.407 45.833 0.00 0.00 0.00 2.85
687 688 5.279456 GGCATAGATCTTCCTCTTCCTCTTC 60.279 48.000 0.00 0.00 0.00 2.87
756 762 6.144080 CGGTTAGTGCTCTATAATTTCCTTCG 59.856 42.308 0.00 0.00 0.00 3.79
757 763 6.073711 GGTTAGTGCTCTATAATTTCCTTCGC 60.074 42.308 0.00 0.00 0.00 4.70
760 766 3.391296 TGCTCTATAATTTCCTTCGCCCT 59.609 43.478 0.00 0.00 0.00 5.19
825 836 2.681848 GACTCCTCGAATCAAGTCCGTA 59.318 50.000 5.34 0.00 33.58 4.02
878 890 2.398554 CGAGTGCCCAATCCAACCG 61.399 63.158 0.00 0.00 0.00 4.44
958 1009 2.303022 TGTCCTCTGTCTCCATCCAAAC 59.697 50.000 0.00 0.00 0.00 2.93
1004 1070 2.293677 ACGGACGCCTGTAGATTATGAG 59.706 50.000 0.00 0.00 0.00 2.90
1014 1080 1.668151 GATTATGAGGTCCGGCGGC 60.668 63.158 23.83 16.55 0.00 6.53
1031 1097 2.905075 CGGCACACCTGAGAATAATCA 58.095 47.619 0.00 0.00 0.00 2.57
1140 1236 4.202305 ACAATGAGCTTATGGAGTCTAGCC 60.202 45.833 0.00 0.00 34.19 3.93
1174 1270 3.655810 CTGTGCTCGCTGGTCCTCC 62.656 68.421 0.00 0.00 0.00 4.30
1182 1278 1.003233 GCTGGTCCTCCGAGCTTTT 60.003 57.895 0.00 0.00 37.40 2.27
1183 1279 1.301677 GCTGGTCCTCCGAGCTTTTG 61.302 60.000 0.00 0.00 37.40 2.44
1229 1353 1.550976 CCCTCCACTGGTCAAGACTAC 59.449 57.143 0.00 0.00 0.00 2.73
1243 1367 4.647615 CTACGGAGGGCGCATCGG 62.648 72.222 10.83 13.51 0.00 4.18
1466 1591 1.226323 CGGAGAAGCGGACGTACAG 60.226 63.158 0.00 0.00 0.00 2.74
1499 1624 1.533711 GGCCACCCATCAGCACTAT 59.466 57.895 0.00 0.00 0.00 2.12
1519 1644 0.533755 GCATCTGATTGGGTCCTCGG 60.534 60.000 0.00 0.00 0.00 4.63
1525 1650 2.610532 GATTGGGTCCTCGGAAGGCC 62.611 65.000 0.00 0.00 43.02 5.19
1539 1664 0.536006 AAGGCCTGCTTGTCACAGTC 60.536 55.000 5.69 0.00 33.09 3.51
1575 1700 3.202818 AGATGCACCTTGTCAATCCCATA 59.797 43.478 0.00 0.00 0.00 2.74
1591 1716 2.943033 CCCATAACCGGTGAACAGATTC 59.057 50.000 8.52 0.00 35.18 2.52
1659 1784 1.070758 GACTCTGGTGCTCTCCACAAA 59.929 52.381 0.00 0.00 46.50 2.83
1672 1797 5.621555 GCTCTCCACAAATACGAGTACTCAA 60.622 44.000 22.37 10.28 0.00 3.02
1704 1832 3.594460 AAGGGTTTACCGTCCGCCG 62.594 63.158 0.00 0.00 46.96 6.46
1712 1840 4.907034 CCGTCCGCCGTCGATCTG 62.907 72.222 0.00 0.00 38.10 2.90
1733 1861 1.813192 CTCCGGAAGAGCTGAGGAC 59.187 63.158 5.23 0.00 35.31 3.85
1922 2059 1.745115 GCCTGCTGTATGCGGTCAA 60.745 57.895 0.00 0.00 46.27 3.18
1929 2066 2.223112 GCTGTATGCGGTCAACTCATTG 60.223 50.000 0.00 0.00 37.14 2.82
1959 2096 2.094854 CCACGCTTTCGACCTAAGTAGT 60.095 50.000 0.00 0.00 39.41 2.73
1960 2097 2.915463 CACGCTTTCGACCTAAGTAGTG 59.085 50.000 9.78 9.78 39.41 2.74
1961 2098 2.094854 ACGCTTTCGACCTAAGTAGTGG 60.095 50.000 0.00 0.00 39.41 4.00
1962 2099 2.094854 CGCTTTCGACCTAAGTAGTGGT 60.095 50.000 0.00 0.00 39.60 4.16
1987 2124 5.051441 CCTGTTGTTACGATGAAGATGATCG 60.051 44.000 0.00 0.00 46.55 3.69
2072 2209 3.643320 AGTCTTCTTCATGTGTGGAGACA 59.357 43.478 18.56 0.00 39.74 3.41
2382 2523 0.606673 GCAGGGAGGAACTTGTGTCC 60.607 60.000 0.00 0.00 41.55 4.02
2521 2672 9.850198 AATAATTATTTAGTTTGGTAGGCGGTA 57.150 29.630 4.81 0.00 0.00 4.02
2533 2684 1.375523 GGCGGTAGTCCTGTGTTGG 60.376 63.158 0.00 0.00 0.00 3.77
2663 2816 7.613585 ACTTGTCCAAAAATATCATCATGCAA 58.386 30.769 0.00 0.00 0.00 4.08
2687 2871 5.180117 ACATACAAAACATGAGTGCAGTCTC 59.820 40.000 21.79 10.09 35.28 3.36
2688 2872 3.813443 ACAAAACATGAGTGCAGTCTCT 58.187 40.909 21.79 7.19 35.68 3.10
2689 2873 4.202441 ACAAAACATGAGTGCAGTCTCTT 58.798 39.130 21.79 7.89 35.68 2.85
2690 2874 4.274459 ACAAAACATGAGTGCAGTCTCTTC 59.726 41.667 21.79 0.00 35.68 2.87
2854 3074 5.745312 TTCTCATGTAGTTCTCCACACAT 57.255 39.130 0.00 0.00 31.25 3.21
2903 3123 5.397360 AGTTGAGGGATTTGGATGAACTTT 58.603 37.500 0.00 0.00 0.00 2.66
2956 3176 6.543465 TCTTGTATGTTGCTGGATTTGGATAG 59.457 38.462 0.00 0.00 0.00 2.08
3213 6413 1.754234 CATTCCGGGGGCTGAAAGG 60.754 63.158 0.00 0.00 0.00 3.11
3246 6446 0.040067 GTGTGTTGGCTTAGCTGCAC 60.040 55.000 3.59 11.06 34.04 4.57
3396 6598 1.135286 GTCCTTGTTGCCAGCTTATGC 60.135 52.381 0.00 0.00 40.05 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.719648 TGAGCATATTTTCAATTTGCGATTTTT 58.280 25.926 6.34 0.00 38.32 1.94
9 10 8.254178 TGAGCATATTTTCAATTTGCGATTTT 57.746 26.923 6.34 0.00 38.32 1.82
10 11 7.830940 TGAGCATATTTTCAATTTGCGATTT 57.169 28.000 6.34 0.00 38.32 2.17
11 12 7.042321 CCATGAGCATATTTTCAATTTGCGATT 60.042 33.333 0.00 0.00 38.32 3.34
12 13 6.422701 CCATGAGCATATTTTCAATTTGCGAT 59.577 34.615 0.00 1.91 38.32 4.58
13 14 5.749588 CCATGAGCATATTTTCAATTTGCGA 59.250 36.000 0.00 0.05 38.32 5.10
14 15 5.521010 ACCATGAGCATATTTTCAATTTGCG 59.479 36.000 0.00 0.00 38.32 4.85
15 16 6.913873 ACCATGAGCATATTTTCAATTTGC 57.086 33.333 0.00 4.32 0.00 3.68
16 17 8.259049 ACAACCATGAGCATATTTTCAATTTG 57.741 30.769 0.00 0.00 0.00 2.32
17 18 9.590451 CTACAACCATGAGCATATTTTCAATTT 57.410 29.630 0.00 0.00 0.00 1.82
18 19 8.970020 TCTACAACCATGAGCATATTTTCAATT 58.030 29.630 0.00 0.00 0.00 2.32
19 20 8.523915 TCTACAACCATGAGCATATTTTCAAT 57.476 30.769 0.00 0.00 0.00 2.57
20 21 7.828717 TCTCTACAACCATGAGCATATTTTCAA 59.171 33.333 0.00 0.00 0.00 2.69
21 22 7.337938 TCTCTACAACCATGAGCATATTTTCA 58.662 34.615 0.00 0.00 0.00 2.69
22 23 7.792374 TCTCTACAACCATGAGCATATTTTC 57.208 36.000 0.00 0.00 0.00 2.29
23 24 8.627403 CAATCTCTACAACCATGAGCATATTTT 58.373 33.333 0.00 0.00 0.00 1.82
24 25 7.776969 ACAATCTCTACAACCATGAGCATATTT 59.223 33.333 0.00 0.00 0.00 1.40
25 26 7.285566 ACAATCTCTACAACCATGAGCATATT 58.714 34.615 0.00 0.00 0.00 1.28
26 27 6.835174 ACAATCTCTACAACCATGAGCATAT 58.165 36.000 0.00 0.00 0.00 1.78
27 28 6.239217 ACAATCTCTACAACCATGAGCATA 57.761 37.500 0.00 0.00 0.00 3.14
28 29 5.108187 ACAATCTCTACAACCATGAGCAT 57.892 39.130 0.00 0.00 0.00 3.79
29 30 4.558226 ACAATCTCTACAACCATGAGCA 57.442 40.909 0.00 0.00 0.00 4.26
30 31 4.937620 TGAACAATCTCTACAACCATGAGC 59.062 41.667 0.00 0.00 0.00 4.26
31 32 6.820152 TCATGAACAATCTCTACAACCATGAG 59.180 38.462 0.00 0.00 34.72 2.90
32 33 6.710278 TCATGAACAATCTCTACAACCATGA 58.290 36.000 0.00 0.00 36.53 3.07
33 34 6.990341 TCATGAACAATCTCTACAACCATG 57.010 37.500 0.00 0.00 0.00 3.66
34 35 8.585471 AATTCATGAACAATCTCTACAACCAT 57.415 30.769 11.07 0.00 0.00 3.55
35 36 8.408043 AAATTCATGAACAATCTCTACAACCA 57.592 30.769 11.07 0.00 0.00 3.67
47 48 9.487790 GGGAACATCTTTTAAATTCATGAACAA 57.512 29.630 11.07 2.61 0.00 2.83
48 49 8.869109 AGGGAACATCTTTTAAATTCATGAACA 58.131 29.630 11.07 0.00 0.00 3.18
121 122 8.286191 TCTTTTACAAATTTGTGGCCATTTTT 57.714 26.923 29.72 3.95 42.31 1.94
122 123 7.872113 TCTTTTACAAATTTGTGGCCATTTT 57.128 28.000 29.72 4.34 42.31 1.82
123 124 7.872113 TTCTTTTACAAATTTGTGGCCATTT 57.128 28.000 29.72 1.56 42.31 2.32
124 125 9.737844 ATATTCTTTTACAAATTTGTGGCCATT 57.262 25.926 29.72 13.58 42.31 3.16
125 126 9.165035 CATATTCTTTTACAAATTTGTGGCCAT 57.835 29.630 29.72 16.91 42.31 4.40
126 127 8.153550 ACATATTCTTTTACAAATTTGTGGCCA 58.846 29.630 29.72 0.00 42.31 5.36
127 128 8.546597 ACATATTCTTTTACAAATTTGTGGCC 57.453 30.769 29.72 0.00 42.31 5.36
189 190 9.381033 TGAACAACTTTCAAATTCATGAACATT 57.619 25.926 11.07 6.39 38.95 2.71
190 191 8.945481 TGAACAACTTTCAAATTCATGAACAT 57.055 26.923 11.07 0.00 38.95 2.71
191 192 8.945481 ATGAACAACTTTCAAATTCATGAACA 57.055 26.923 11.07 0.00 38.95 3.18
197 198 9.597170 TGAAATCATGAACAACTTTCAAATTCA 57.403 25.926 15.64 0.00 34.04 2.57
203 204 9.212641 TGTTTTTGAAATCATGAACAACTTTCA 57.787 25.926 14.50 14.50 34.87 2.69
205 206 9.991388 CATGTTTTTGAAATCATGAACAACTTT 57.009 25.926 16.82 0.00 43.64 2.66
206 207 9.165035 ACATGTTTTTGAAATCATGAACAACTT 57.835 25.926 23.83 6.62 43.64 2.66
207 208 8.721019 ACATGTTTTTGAAATCATGAACAACT 57.279 26.923 23.83 7.11 43.64 3.16
208 209 9.424659 GAACATGTTTTTGAAATCATGAACAAC 57.575 29.630 23.83 4.84 43.64 3.32
209 210 9.159364 TGAACATGTTTTTGAAATCATGAACAA 57.841 25.926 23.83 4.42 43.64 2.83
210 211 8.713737 TGAACATGTTTTTGAAATCATGAACA 57.286 26.923 23.83 19.79 43.64 3.18
211 212 9.588774 CATGAACATGTTTTTGAAATCATGAAC 57.411 29.630 23.83 18.36 43.64 3.18
247 248 9.381033 TGAACTGTTTTTGAAATCATGAACATT 57.619 25.926 0.00 0.00 33.59 2.71
248 249 8.819974 GTGAACTGTTTTTGAAATCATGAACAT 58.180 29.630 0.00 0.00 33.59 2.71
249 250 7.816513 TGTGAACTGTTTTTGAAATCATGAACA 59.183 29.630 0.00 0.00 33.26 3.18
250 251 8.183830 TGTGAACTGTTTTTGAAATCATGAAC 57.816 30.769 0.00 0.00 0.00 3.18
251 252 8.768957 TTGTGAACTGTTTTTGAAATCATGAA 57.231 26.923 0.00 0.00 0.00 2.57
252 253 8.768957 TTTGTGAACTGTTTTTGAAATCATGA 57.231 26.923 0.00 0.00 0.00 3.07
253 254 9.991388 AATTTGTGAACTGTTTTTGAAATCATG 57.009 25.926 0.00 0.00 0.00 3.07
255 256 9.212641 TGAATTTGTGAACTGTTTTTGAAATCA 57.787 25.926 0.00 0.00 0.00 2.57
287 288 8.550376 GCAAACATATTTCAAACTCAACAACAT 58.450 29.630 0.00 0.00 0.00 2.71
288 289 7.547019 TGCAAACATATTTCAAACTCAACAACA 59.453 29.630 0.00 0.00 0.00 3.33
289 290 7.904094 TGCAAACATATTTCAAACTCAACAAC 58.096 30.769 0.00 0.00 0.00 3.32
290 291 8.484641 TTGCAAACATATTTCAAACTCAACAA 57.515 26.923 0.00 0.00 0.00 2.83
291 292 8.484641 TTTGCAAACATATTTCAAACTCAACA 57.515 26.923 8.05 0.00 0.00 3.33
292 293 9.934190 AATTTGCAAACATATTTCAAACTCAAC 57.066 25.926 15.41 0.00 32.58 3.18
293 294 9.932699 CAATTTGCAAACATATTTCAAACTCAA 57.067 25.926 15.41 0.00 32.58 3.02
294 295 9.322773 TCAATTTGCAAACATATTTCAAACTCA 57.677 25.926 15.41 0.00 32.58 3.41
333 334 9.527157 TCTTTTCCCTTTTTCCTTTTTCATTTT 57.473 25.926 0.00 0.00 0.00 1.82
334 335 9.527157 TTCTTTTCCCTTTTTCCTTTTTCATTT 57.473 25.926 0.00 0.00 0.00 2.32
335 336 9.527157 TTTCTTTTCCCTTTTTCCTTTTTCATT 57.473 25.926 0.00 0.00 0.00 2.57
336 337 9.699410 ATTTCTTTTCCCTTTTTCCTTTTTCAT 57.301 25.926 0.00 0.00 0.00 2.57
459 460 4.962362 AGAACATTCCCTGAACTGGTTTTT 59.038 37.500 0.00 0.00 0.00 1.94
460 461 4.546674 AGAACATTCCCTGAACTGGTTTT 58.453 39.130 0.00 0.00 0.00 2.43
461 462 4.184649 AGAACATTCCCTGAACTGGTTT 57.815 40.909 0.00 0.00 0.00 3.27
462 463 3.884037 AGAACATTCCCTGAACTGGTT 57.116 42.857 0.00 0.00 0.00 3.67
463 464 4.168101 TCTAGAACATTCCCTGAACTGGT 58.832 43.478 0.00 0.00 0.00 4.00
464 465 4.826274 TCTAGAACATTCCCTGAACTGG 57.174 45.455 0.00 0.00 0.00 4.00
465 466 4.938226 GGTTCTAGAACATTCCCTGAACTG 59.062 45.833 31.30 0.00 42.85 3.16
466 467 4.846940 AGGTTCTAGAACATTCCCTGAACT 59.153 41.667 31.30 15.46 42.85 3.01
467 468 5.167303 AGGTTCTAGAACATTCCCTGAAC 57.833 43.478 31.30 13.69 42.85 3.18
468 469 5.843019 AAGGTTCTAGAACATTCCCTGAA 57.157 39.130 31.30 0.00 40.75 3.02
475 476 5.278315 GGTTTTGCGAAGGTTCTAGAACATT 60.278 40.000 29.86 29.86 46.30 2.71
476 477 4.215613 GGTTTTGCGAAGGTTCTAGAACAT 59.784 41.667 31.30 24.80 42.85 2.71
477 478 3.562557 GGTTTTGCGAAGGTTCTAGAACA 59.437 43.478 31.30 11.77 42.85 3.18
478 479 3.363673 CGGTTTTGCGAAGGTTCTAGAAC 60.364 47.826 24.73 24.73 40.45 3.01
479 480 2.803956 CGGTTTTGCGAAGGTTCTAGAA 59.196 45.455 0.00 0.00 0.00 2.10
480 481 2.409975 CGGTTTTGCGAAGGTTCTAGA 58.590 47.619 0.00 0.00 0.00 2.43
481 482 1.463444 CCGGTTTTGCGAAGGTTCTAG 59.537 52.381 0.00 0.00 0.00 2.43
482 483 1.202675 ACCGGTTTTGCGAAGGTTCTA 60.203 47.619 0.00 0.00 0.00 2.10
483 484 0.464916 ACCGGTTTTGCGAAGGTTCT 60.465 50.000 0.00 0.00 0.00 3.01
484 485 0.317519 CACCGGTTTTGCGAAGGTTC 60.318 55.000 2.97 0.00 32.04 3.62
485 486 1.730451 CCACCGGTTTTGCGAAGGTT 61.730 55.000 2.97 0.00 32.04 3.50
486 487 2.190841 CCACCGGTTTTGCGAAGGT 61.191 57.895 2.97 0.00 35.24 3.50
487 488 2.642700 CCACCGGTTTTGCGAAGG 59.357 61.111 2.97 0.00 0.00 3.46
488 489 2.642700 CCCACCGGTTTTGCGAAG 59.357 61.111 2.97 0.00 0.00 3.79
489 490 2.905935 TTCCCCACCGGTTTTGCGAA 62.906 55.000 2.97 0.00 0.00 4.70
490 491 3.417167 TTCCCCACCGGTTTTGCGA 62.417 57.895 2.97 0.00 0.00 5.10
491 492 2.907917 TTCCCCACCGGTTTTGCG 60.908 61.111 2.97 0.00 0.00 4.85
492 493 1.110518 TTCTTCCCCACCGGTTTTGC 61.111 55.000 2.97 0.00 0.00 3.68
493 494 1.404843 TTTCTTCCCCACCGGTTTTG 58.595 50.000 2.97 0.00 0.00 2.44
494 495 1.758280 GTTTTCTTCCCCACCGGTTTT 59.242 47.619 2.97 0.00 0.00 2.43
495 496 1.405872 GTTTTCTTCCCCACCGGTTT 58.594 50.000 2.97 0.00 0.00 3.27
496 497 0.468585 GGTTTTCTTCCCCACCGGTT 60.469 55.000 2.97 0.00 0.00 4.44
497 498 1.152138 GGTTTTCTTCCCCACCGGT 59.848 57.895 0.00 0.00 0.00 5.28
498 499 1.969589 CGGTTTTCTTCCCCACCGG 60.970 63.158 0.00 0.00 46.92 5.28
499 500 3.663202 CGGTTTTCTTCCCCACCG 58.337 61.111 0.00 0.00 45.75 4.94
500 501 0.179012 TCACGGTTTTCTTCCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
501 502 1.682740 TTCACGGTTTTCTTCCCCAC 58.317 50.000 0.00 0.00 0.00 4.61
502 503 2.235016 CATTCACGGTTTTCTTCCCCA 58.765 47.619 0.00 0.00 0.00 4.96
503 504 1.544246 CCATTCACGGTTTTCTTCCCC 59.456 52.381 0.00 0.00 0.00 4.81
504 505 1.544246 CCCATTCACGGTTTTCTTCCC 59.456 52.381 0.00 0.00 0.00 3.97
505 506 1.067846 GCCCATTCACGGTTTTCTTCC 60.068 52.381 0.00 0.00 0.00 3.46
506 507 1.067846 GGCCCATTCACGGTTTTCTTC 60.068 52.381 0.00 0.00 0.00 2.87
507 508 0.966179 GGCCCATTCACGGTTTTCTT 59.034 50.000 0.00 0.00 0.00 2.52
508 509 1.241315 CGGCCCATTCACGGTTTTCT 61.241 55.000 0.00 0.00 0.00 2.52
509 510 1.211709 CGGCCCATTCACGGTTTTC 59.788 57.895 0.00 0.00 0.00 2.29
510 511 1.228306 TCGGCCCATTCACGGTTTT 60.228 52.632 0.00 0.00 0.00 2.43
511 512 1.969589 GTCGGCCCATTCACGGTTT 60.970 57.895 0.00 0.00 0.00 3.27
512 513 2.359478 GTCGGCCCATTCACGGTT 60.359 61.111 0.00 0.00 0.00 4.44
513 514 4.404098 GGTCGGCCCATTCACGGT 62.404 66.667 0.00 0.00 0.00 4.83
523 524 2.211468 ATCCTCCTTTTGGGTCGGCC 62.211 60.000 0.00 0.00 40.87 6.13
524 525 0.748367 GATCCTCCTTTTGGGTCGGC 60.748 60.000 0.00 0.00 40.87 5.54
525 526 3.478540 GATCCTCCTTTTGGGTCGG 57.521 57.895 0.00 0.00 40.87 4.79
527 528 2.357075 GTTCGATCCTCCTTTTGGGTC 58.643 52.381 0.00 0.00 40.87 4.46
528 529 1.338769 CGTTCGATCCTCCTTTTGGGT 60.339 52.381 0.00 0.00 40.87 4.51
529 530 1.066430 TCGTTCGATCCTCCTTTTGGG 60.066 52.381 0.00 0.00 40.87 4.12
530 531 2.380084 TCGTTCGATCCTCCTTTTGG 57.620 50.000 0.00 0.00 42.21 3.28
531 532 2.609459 CCATCGTTCGATCCTCCTTTTG 59.391 50.000 4.67 0.00 0.00 2.44
532 533 2.500098 TCCATCGTTCGATCCTCCTTTT 59.500 45.455 4.67 0.00 0.00 2.27
533 534 2.108168 TCCATCGTTCGATCCTCCTTT 58.892 47.619 4.67 0.00 0.00 3.11
534 535 1.409427 GTCCATCGTTCGATCCTCCTT 59.591 52.381 4.67 0.00 0.00 3.36
535 536 1.033574 GTCCATCGTTCGATCCTCCT 58.966 55.000 4.67 0.00 0.00 3.69
536 537 0.317938 CGTCCATCGTTCGATCCTCC 60.318 60.000 4.67 0.00 34.52 4.30
537 538 0.661552 TCGTCCATCGTTCGATCCTC 59.338 55.000 4.67 0.00 40.80 3.71
538 539 0.663688 CTCGTCCATCGTTCGATCCT 59.336 55.000 4.67 0.00 40.80 3.24
539 540 0.661552 TCTCGTCCATCGTTCGATCC 59.338 55.000 4.67 0.00 40.80 3.36
540 541 1.598132 TCTCTCGTCCATCGTTCGATC 59.402 52.381 4.67 0.00 40.80 3.69
541 542 1.600013 CTCTCTCGTCCATCGTTCGAT 59.400 52.381 1.68 1.68 40.80 3.59
542 543 1.007580 CTCTCTCGTCCATCGTTCGA 58.992 55.000 0.00 0.00 40.80 3.71
543 544 0.590230 GCTCTCTCGTCCATCGTTCG 60.590 60.000 0.00 0.00 40.80 3.95
544 545 0.736053 AGCTCTCTCGTCCATCGTTC 59.264 55.000 0.00 0.00 40.80 3.95
545 546 1.944024 CTAGCTCTCTCGTCCATCGTT 59.056 52.381 0.00 0.00 40.80 3.85
546 547 1.588674 CTAGCTCTCTCGTCCATCGT 58.411 55.000 0.00 0.00 40.80 3.73
547 548 0.871722 CCTAGCTCTCTCGTCCATCG 59.128 60.000 0.00 0.00 41.41 3.84
548 549 1.243902 CCCTAGCTCTCTCGTCCATC 58.756 60.000 0.00 0.00 0.00 3.51
549 550 0.825840 GCCCTAGCTCTCTCGTCCAT 60.826 60.000 0.00 0.00 35.50 3.41
550 551 1.454111 GCCCTAGCTCTCTCGTCCA 60.454 63.158 0.00 0.00 35.50 4.02
551 552 0.825840 ATGCCCTAGCTCTCTCGTCC 60.826 60.000 0.00 0.00 40.80 4.79
552 553 0.313672 CATGCCCTAGCTCTCTCGTC 59.686 60.000 0.00 0.00 40.80 4.20
553 554 0.106469 TCATGCCCTAGCTCTCTCGT 60.106 55.000 0.00 0.00 40.80 4.18
554 555 0.313672 GTCATGCCCTAGCTCTCTCG 59.686 60.000 0.00 0.00 40.80 4.04
555 556 1.340889 CTGTCATGCCCTAGCTCTCTC 59.659 57.143 0.00 0.00 40.80 3.20
556 557 1.412079 CTGTCATGCCCTAGCTCTCT 58.588 55.000 0.00 0.00 40.80 3.10
557 558 0.249826 GCTGTCATGCCCTAGCTCTC 60.250 60.000 0.00 0.00 40.80 3.20
558 559 0.690411 AGCTGTCATGCCCTAGCTCT 60.690 55.000 0.00 0.00 42.45 4.09
559 560 1.043816 TAGCTGTCATGCCCTAGCTC 58.956 55.000 13.52 0.00 44.70 4.09
560 561 4.063335 AGCTGTCATGCCCTAGCT 57.937 55.556 0.00 0.00 41.38 3.32
561 562 2.551459 CAATTAGCTGTCATGCCCTAGC 59.449 50.000 0.00 0.00 40.48 3.42
562 563 3.144506 CCAATTAGCTGTCATGCCCTAG 58.855 50.000 0.00 0.00 0.00 3.02
563 564 2.158623 CCCAATTAGCTGTCATGCCCTA 60.159 50.000 0.00 0.00 0.00 3.53
564 565 1.410648 CCCAATTAGCTGTCATGCCCT 60.411 52.381 0.00 0.00 0.00 5.19
565 566 1.035139 CCCAATTAGCTGTCATGCCC 58.965 55.000 0.00 0.00 0.00 5.36
566 567 0.386838 GCCCAATTAGCTGTCATGCC 59.613 55.000 0.00 0.00 0.00 4.40
567 568 0.386838 GGCCCAATTAGCTGTCATGC 59.613 55.000 0.00 0.00 0.00 4.06
568 569 0.664761 CGGCCCAATTAGCTGTCATG 59.335 55.000 0.00 0.00 0.00 3.07
569 570 0.546122 TCGGCCCAATTAGCTGTCAT 59.454 50.000 0.00 0.00 37.86 3.06
570 571 0.107703 CTCGGCCCAATTAGCTGTCA 60.108 55.000 0.00 0.00 37.86 3.58
571 572 1.440145 GCTCGGCCCAATTAGCTGTC 61.440 60.000 0.00 0.25 37.86 3.51
572 573 1.452108 GCTCGGCCCAATTAGCTGT 60.452 57.895 0.00 0.00 37.86 4.40
573 574 1.153086 AGCTCGGCCCAATTAGCTG 60.153 57.895 9.61 0.18 43.46 4.24
574 575 3.324713 AGCTCGGCCCAATTAGCT 58.675 55.556 0.00 0.86 40.41 3.32
575 576 1.153168 TGAGCTCGGCCCAATTAGC 60.153 57.895 9.64 0.00 35.16 3.09
576 577 1.154205 CGTGAGCTCGGCCCAATTAG 61.154 60.000 9.64 0.00 0.00 1.73
577 578 1.153449 CGTGAGCTCGGCCCAATTA 60.153 57.895 9.64 0.00 0.00 1.40
578 579 1.895020 TACGTGAGCTCGGCCCAATT 61.895 55.000 9.64 0.00 34.94 2.32
579 580 2.298158 CTACGTGAGCTCGGCCCAAT 62.298 60.000 9.64 0.00 34.94 3.16
580 581 2.992689 TACGTGAGCTCGGCCCAA 60.993 61.111 9.64 0.00 34.94 4.12
581 582 3.449227 CTACGTGAGCTCGGCCCA 61.449 66.667 9.64 0.00 34.94 5.36
590 591 0.949105 AAAACGCCAGGCTACGTGAG 60.949 55.000 10.54 0.00 42.68 3.51
591 592 0.533308 AAAAACGCCAGGCTACGTGA 60.533 50.000 10.54 0.00 42.68 4.35
592 593 0.385473 CAAAAACGCCAGGCTACGTG 60.385 55.000 10.54 4.34 42.68 4.49
593 594 1.512156 CCAAAAACGCCAGGCTACGT 61.512 55.000 10.54 8.75 46.07 3.57
594 595 1.209127 CCAAAAACGCCAGGCTACG 59.791 57.895 10.54 7.48 0.00 3.51
595 596 1.584495 CCCAAAAACGCCAGGCTAC 59.416 57.895 10.54 0.00 0.00 3.58
596 597 1.605165 CCCCAAAAACGCCAGGCTA 60.605 57.895 10.54 0.00 0.00 3.93
597 598 2.917227 CCCCAAAAACGCCAGGCT 60.917 61.111 10.54 0.00 0.00 4.58
598 599 3.220999 GACCCCAAAAACGCCAGGC 62.221 63.158 0.00 0.00 0.00 4.85
599 600 0.250989 TAGACCCCAAAAACGCCAGG 60.251 55.000 0.00 0.00 0.00 4.45
600 601 0.879090 GTAGACCCCAAAAACGCCAG 59.121 55.000 0.00 0.00 0.00 4.85
601 602 0.475044 AGTAGACCCCAAAAACGCCA 59.525 50.000 0.00 0.00 0.00 5.69
602 603 2.477845 TAGTAGACCCCAAAAACGCC 57.522 50.000 0.00 0.00 0.00 5.68
603 604 4.753610 GGATATAGTAGACCCCAAAAACGC 59.246 45.833 0.00 0.00 0.00 4.84
604 605 5.303165 GGGATATAGTAGACCCCAAAAACG 58.697 45.833 0.00 0.00 37.04 3.60
636 637 4.475135 GACCTGGAAGCGGAGGCC 62.475 72.222 0.00 0.00 41.24 5.19
637 638 3.254024 TTGACCTGGAAGCGGAGGC 62.254 63.158 0.00 0.00 40.37 4.70
638 639 1.376037 GTTGACCTGGAAGCGGAGG 60.376 63.158 0.00 0.00 35.26 4.30
639 640 1.738099 CGTTGACCTGGAAGCGGAG 60.738 63.158 0.00 0.00 0.00 4.63
640 641 2.342279 CGTTGACCTGGAAGCGGA 59.658 61.111 0.00 0.00 0.00 5.54
641 642 3.423154 GCGTTGACCTGGAAGCGG 61.423 66.667 0.00 0.00 0.00 5.52
642 643 3.777925 CGCGTTGACCTGGAAGCG 61.778 66.667 0.00 6.18 41.56 4.68
643 644 2.665185 ACGCGTTGACCTGGAAGC 60.665 61.111 5.58 0.00 0.00 3.86
644 645 2.954753 GCACGCGTTGACCTGGAAG 61.955 63.158 10.22 0.00 0.00 3.46
645 646 2.970324 GCACGCGTTGACCTGGAA 60.970 61.111 10.22 0.00 0.00 3.53
651 652 3.420222 CTATGCCGCACGCGTTGAC 62.420 63.158 10.22 0.28 42.08 3.18
652 653 2.899345 ATCTATGCCGCACGCGTTGA 62.899 55.000 10.22 0.00 41.50 3.18
653 654 2.416372 GATCTATGCCGCACGCGTTG 62.416 60.000 10.22 4.86 42.08 4.10
654 655 2.202878 ATCTATGCCGCACGCGTT 60.203 55.556 10.22 0.00 42.08 4.84
655 656 2.629050 AAGATCTATGCCGCACGCGT 62.629 55.000 5.58 5.58 42.08 6.01
674 675 5.238868 CGTATACGATTGAAGAGGAAGAGGA 59.761 44.000 20.58 0.00 43.02 3.71
756 762 5.112129 TCCTAATTCTCTACCAAAAGGGC 57.888 43.478 0.00 0.00 42.05 5.19
757 763 5.428783 TCCTCCTAATTCTCTACCAAAAGGG 59.571 44.000 0.00 0.00 44.81 3.95
760 766 8.267894 CAGAATCCTCCTAATTCTCTACCAAAA 58.732 37.037 0.00 0.00 40.61 2.44
847 859 1.095600 GCACTCGGGGATTCTTTTCC 58.904 55.000 0.00 0.00 34.83 3.13
988 1054 2.351835 CGGACCTCATAATCTACAGGCG 60.352 54.545 0.00 0.00 0.00 5.52
1014 1080 6.860539 CGATACTCTGATTATTCTCAGGTGTG 59.139 42.308 1.58 0.00 42.42 3.82
1167 1263 0.250770 AACCAAAAGCTCGGAGGACC 60.251 55.000 7.20 0.00 0.00 4.46
1174 1270 2.872245 TCTTCAGTGAACCAAAAGCTCG 59.128 45.455 0.08 0.00 0.00 5.03
1182 1278 4.206375 TGCAGAATTTCTTCAGTGAACCA 58.794 39.130 0.08 0.00 33.56 3.67
1183 1279 4.836125 TGCAGAATTTCTTCAGTGAACC 57.164 40.909 0.08 0.00 33.56 3.62
1243 1367 2.125188 GTCCTGAGGCAGCTCAGC 60.125 66.667 12.97 0.00 46.89 4.26
1466 1591 1.224870 GGCCCTGGAAGAGTTAGCC 59.775 63.158 0.00 0.00 34.07 3.93
1499 1624 0.178767 CGAGGACCCAATCAGATGCA 59.821 55.000 0.00 0.00 0.00 3.96
1519 1644 0.536006 ACTGTGACAAGCAGGCCTTC 60.536 55.000 0.00 0.00 38.22 3.46
1525 1650 1.723542 GTCATCGACTGTGACAAGCAG 59.276 52.381 11.79 0.00 44.13 4.24
1539 1664 1.000938 TGCATCTCGGATCTGTCATCG 60.001 52.381 0.42 0.00 0.00 3.84
1575 1700 3.600388 GAGATGAATCTGTTCACCGGTT 58.400 45.455 2.97 0.00 46.43 4.44
1659 1784 2.165845 GGTGTGGCTTGAGTACTCGTAT 59.834 50.000 17.85 0.00 0.00 3.06
1672 1797 2.281761 CCTTTCTGCGGTGTGGCT 60.282 61.111 0.00 0.00 0.00 4.75
1704 1832 2.356818 CTTCCGGAGCCCAGATCGAC 62.357 65.000 3.34 0.00 0.00 4.20
1733 1861 2.450476 AGGCTTTATGGTGAAGCTTGG 58.550 47.619 2.10 0.00 46.64 3.61
1789 1926 1.890876 TTGTGTATGAGCACCACCAC 58.109 50.000 0.00 0.00 38.52 4.16
1790 1927 2.617788 GGATTGTGTATGAGCACCACCA 60.618 50.000 0.00 0.00 38.52 4.17
1791 1928 2.017049 GGATTGTGTATGAGCACCACC 58.983 52.381 0.00 0.00 38.52 4.61
1922 2059 1.759445 CGTGGATCTCTCCCAATGAGT 59.241 52.381 0.00 0.00 41.29 3.41
1929 2066 0.528684 CGAAAGCGTGGATCTCTCCC 60.529 60.000 0.00 0.00 41.29 4.30
1959 2096 3.322541 TCTTCATCGTAACAACAGGACCA 59.677 43.478 0.00 0.00 0.00 4.02
1960 2097 3.921677 TCTTCATCGTAACAACAGGACC 58.078 45.455 0.00 0.00 0.00 4.46
1961 2098 5.168569 TCATCTTCATCGTAACAACAGGAC 58.831 41.667 0.00 0.00 0.00 3.85
1962 2099 5.400066 TCATCTTCATCGTAACAACAGGA 57.600 39.130 0.00 0.00 0.00 3.86
2072 2209 2.422479 TCTAAATCGCAGTGCTCGTACT 59.578 45.455 14.33 0.00 0.00 2.73
2205 2342 3.731652 TGATTGTGCCCAAGAAACAAG 57.268 42.857 0.00 0.00 37.24 3.16
2382 2523 4.676951 TTGGAGCAAAGCCGGGGG 62.677 66.667 2.18 0.00 0.00 5.40
2434 2575 4.853924 TGAAAGCCAAGTTCATCTTTCC 57.146 40.909 13.86 3.28 42.03 3.13
2663 2816 5.065914 AGACTGCACTCATGTTTTGTATGT 58.934 37.500 0.00 0.00 0.00 2.29
2956 3176 3.947834 ACATGCAAACTCCCTGCTATTAC 59.052 43.478 0.00 0.00 40.59 1.89
3160 3855 9.801873 AAATGATGCAGGTTTGTAATTGTATAC 57.198 29.630 0.00 0.00 0.00 1.47
3161 3856 9.800433 CAAATGATGCAGGTTTGTAATTGTATA 57.200 29.630 11.13 0.00 0.00 1.47
3162 3857 8.530311 TCAAATGATGCAGGTTTGTAATTGTAT 58.470 29.630 16.14 0.00 35.09 2.29
3213 6413 1.162698 ACACACATGCTGACAGATGC 58.837 50.000 6.65 0.00 0.00 3.91
3246 6446 3.452627 AGCTTAGTCCATGTCCAACTAGG 59.547 47.826 0.00 0.00 39.47 3.02
3336 6536 3.320673 AAGATGGACGAAAGGAGACAC 57.679 47.619 0.00 0.00 0.00 3.67
3337 6537 3.323691 TCAAAGATGGACGAAAGGAGACA 59.676 43.478 0.00 0.00 0.00 3.41
3340 6540 2.675348 GCTCAAAGATGGACGAAAGGAG 59.325 50.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.