Multiple sequence alignment - TraesCS2D01G095900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G095900 chr2D 100.000 3983 0 0 1 3983 48038269 48034287 0.000000e+00 7356.0
1 TraesCS2D01G095900 chr2D 74.242 198 43 6 215 407 584260126 584259932 4.270000e-10 76.8
2 TraesCS2D01G095900 chr2D 100.000 28 0 0 3314 3341 648576326 648576353 7.000000e-03 52.8
3 TraesCS2D01G095900 chr2B 96.671 3515 105 8 475 3983 75965344 75968852 0.000000e+00 5832.0
4 TraesCS2D01G095900 chr2A 94.650 2654 113 18 610 3240 51029893 51032540 0.000000e+00 4087.0
5 TraesCS2D01G095900 chr2A 94.282 752 36 3 3238 3983 51032591 51033341 0.000000e+00 1144.0
6 TraesCS2D01G095900 chr4B 79.058 191 28 11 151 335 599916510 599916694 1.940000e-23 121.0
7 TraesCS2D01G095900 chr6B 82.716 81 5 2 3260 3340 47865949 47866020 3.320000e-06 63.9
8 TraesCS2D01G095900 chr1A 100.000 30 0 0 306 335 577270092 577270063 5.560000e-04 56.5
9 TraesCS2D01G095900 chr5D 92.105 38 3 0 3301 3338 108518079 108518116 2.000000e-03 54.7
10 TraesCS2D01G095900 chr5B 94.444 36 0 2 3315 3349 619162983 619163017 2.000000e-03 54.7
11 TraesCS2D01G095900 chr5B 94.444 36 0 2 3315 3349 619216677 619216711 2.000000e-03 54.7
12 TraesCS2D01G095900 chr7B 100.000 28 0 0 3259 3286 68867607 68867634 7.000000e-03 52.8
13 TraesCS2D01G095900 chr3D 100.000 28 0 0 3315 3342 496099877 496099904 7.000000e-03 52.8
14 TraesCS2D01G095900 chr3A 94.118 34 2 0 308 341 28165234 28165201 7.000000e-03 52.8
15 TraesCS2D01G095900 chr3A 100.000 28 0 0 3315 3342 635331586 635331613 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G095900 chr2D 48034287 48038269 3982 True 7356.0 7356 100.000 1 3983 1 chr2D.!!$R1 3982
1 TraesCS2D01G095900 chr2B 75965344 75968852 3508 False 5832.0 5832 96.671 475 3983 1 chr2B.!!$F1 3508
2 TraesCS2D01G095900 chr2A 51029893 51033341 3448 False 2615.5 4087 94.466 610 3983 2 chr2A.!!$F1 3373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.030369 GACGTCTGTGGTGACTTCGT 59.970 55.0 8.7 0.0 35.0 3.85 F
278 279 0.030369 ACGTCTGTGGTGACTTCGTC 59.970 55.0 0.0 0.0 35.0 4.20 F
1212 1231 0.035820 GGGCACTTGAATCCGGTACA 60.036 55.0 0.0 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1303 0.539669 TCTCTGAGTCCGACAAGCCA 60.540 55.0 4.32 0.00 0.0 4.75 R
1299 1318 2.660258 AAAACCGCACCGCTGTCTCT 62.660 55.0 0.00 0.00 0.0 3.10 R
3153 3173 1.060713 CTACTTTCACGTGTCTGCCG 58.939 55.0 16.51 2.31 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.957491 CACAGTTGTGCTTCCCAAAA 57.043 45.000 0.00 0.00 39.39 2.44
50 51 3.244033 CACAGTTGTGCTTCCCAAAAA 57.756 42.857 0.00 0.00 39.39 1.94
51 52 3.795877 CACAGTTGTGCTTCCCAAAAAT 58.204 40.909 0.00 0.00 39.39 1.82
52 53 4.190772 CACAGTTGTGCTTCCCAAAAATT 58.809 39.130 0.00 0.00 39.39 1.82
53 54 5.355596 CACAGTTGTGCTTCCCAAAAATTA 58.644 37.500 0.00 0.00 39.39 1.40
54 55 5.814705 CACAGTTGTGCTTCCCAAAAATTAA 59.185 36.000 0.00 0.00 39.39 1.40
55 56 6.314896 CACAGTTGTGCTTCCCAAAAATTAAA 59.685 34.615 0.00 0.00 39.39 1.52
56 57 6.881602 ACAGTTGTGCTTCCCAAAAATTAAAA 59.118 30.769 0.00 0.00 0.00 1.52
57 58 7.391833 ACAGTTGTGCTTCCCAAAAATTAAAAA 59.608 29.630 0.00 0.00 0.00 1.94
106 107 2.869233 GCACAGATGTGGTGTTTGTT 57.131 45.000 14.44 0.00 45.72 2.83
107 108 3.163630 GCACAGATGTGGTGTTTGTTT 57.836 42.857 14.44 0.00 45.72 2.83
108 109 3.115554 GCACAGATGTGGTGTTTGTTTC 58.884 45.455 14.44 0.00 45.72 2.78
109 110 3.181487 GCACAGATGTGGTGTTTGTTTCT 60.181 43.478 14.44 0.00 45.72 2.52
110 111 4.353737 CACAGATGTGGTGTTTGTTTCTG 58.646 43.478 5.02 0.00 42.10 3.02
111 112 4.016444 ACAGATGTGGTGTTTGTTTCTGT 58.984 39.130 0.00 0.00 37.95 3.41
112 113 4.462483 ACAGATGTGGTGTTTGTTTCTGTT 59.538 37.500 0.00 0.00 39.28 3.16
113 114 5.047377 ACAGATGTGGTGTTTGTTTCTGTTT 60.047 36.000 0.00 0.00 39.28 2.83
114 115 6.151985 ACAGATGTGGTGTTTGTTTCTGTTTA 59.848 34.615 0.00 0.00 39.28 2.01
115 116 6.692681 CAGATGTGGTGTTTGTTTCTGTTTAG 59.307 38.462 0.00 0.00 0.00 1.85
116 117 6.601613 AGATGTGGTGTTTGTTTCTGTTTAGA 59.398 34.615 0.00 0.00 0.00 2.10
117 118 6.767524 TGTGGTGTTTGTTTCTGTTTAGAT 57.232 33.333 0.00 0.00 31.81 1.98
118 119 6.559810 TGTGGTGTTTGTTTCTGTTTAGATG 58.440 36.000 0.00 0.00 31.81 2.90
119 120 5.977129 GTGGTGTTTGTTTCTGTTTAGATGG 59.023 40.000 0.00 0.00 31.81 3.51
120 121 5.654650 TGGTGTTTGTTTCTGTTTAGATGGT 59.345 36.000 0.00 0.00 31.81 3.55
121 122 6.153680 TGGTGTTTGTTTCTGTTTAGATGGTT 59.846 34.615 0.00 0.00 31.81 3.67
122 123 7.339721 TGGTGTTTGTTTCTGTTTAGATGGTTA 59.660 33.333 0.00 0.00 31.81 2.85
123 124 8.192110 GGTGTTTGTTTCTGTTTAGATGGTTAA 58.808 33.333 0.00 0.00 31.81 2.01
124 125 9.233232 GTGTTTGTTTCTGTTTAGATGGTTAAG 57.767 33.333 0.00 0.00 31.81 1.85
125 126 8.962679 TGTTTGTTTCTGTTTAGATGGTTAAGT 58.037 29.630 0.00 0.00 31.81 2.24
126 127 9.797556 GTTTGTTTCTGTTTAGATGGTTAAGTT 57.202 29.630 0.00 0.00 31.81 2.66
129 130 9.403583 TGTTTCTGTTTAGATGGTTAAGTTTCT 57.596 29.630 0.00 0.00 31.81 2.52
132 133 8.974060 TCTGTTTAGATGGTTAAGTTTCTTGT 57.026 30.769 0.00 0.00 0.00 3.16
133 134 8.836413 TCTGTTTAGATGGTTAAGTTTCTTGTG 58.164 33.333 0.00 0.00 0.00 3.33
134 135 8.740123 TGTTTAGATGGTTAAGTTTCTTGTGA 57.260 30.769 0.00 0.00 0.00 3.58
135 136 9.349713 TGTTTAGATGGTTAAGTTTCTTGTGAT 57.650 29.630 0.00 0.00 0.00 3.06
136 137 9.612620 GTTTAGATGGTTAAGTTTCTTGTGATG 57.387 33.333 0.00 0.00 0.00 3.07
137 138 9.567776 TTTAGATGGTTAAGTTTCTTGTGATGA 57.432 29.630 0.00 0.00 0.00 2.92
138 139 9.567776 TTAGATGGTTAAGTTTCTTGTGATGAA 57.432 29.630 0.00 0.00 0.00 2.57
139 140 8.463930 AGATGGTTAAGTTTCTTGTGATGAAA 57.536 30.769 0.00 0.00 0.00 2.69
140 141 9.082313 AGATGGTTAAGTTTCTTGTGATGAAAT 57.918 29.630 0.00 0.00 36.10 2.17
141 142 9.346725 GATGGTTAAGTTTCTTGTGATGAAATC 57.653 33.333 0.00 0.00 45.83 2.17
179 180 3.011119 AGTCCTAGACTTAGCACTGACG 58.989 50.000 0.00 0.00 40.28 4.35
180 181 3.008330 GTCCTAGACTTAGCACTGACGA 58.992 50.000 0.00 0.00 0.00 4.20
181 182 3.628487 GTCCTAGACTTAGCACTGACGAT 59.372 47.826 0.00 0.00 0.00 3.73
182 183 3.878103 TCCTAGACTTAGCACTGACGATC 59.122 47.826 0.00 0.00 0.00 3.69
183 184 2.834574 AGACTTAGCACTGACGATCG 57.165 50.000 14.88 14.88 0.00 3.69
184 185 1.192793 GACTTAGCACTGACGATCGC 58.807 55.000 16.60 8.83 0.00 4.58
185 186 0.526211 ACTTAGCACTGACGATCGCA 59.474 50.000 16.60 13.18 0.00 5.10
186 187 1.135139 ACTTAGCACTGACGATCGCAT 59.865 47.619 16.60 0.00 0.00 4.73
187 188 2.196749 CTTAGCACTGACGATCGCATT 58.803 47.619 16.60 5.82 0.00 3.56
188 189 2.293677 TAGCACTGACGATCGCATTT 57.706 45.000 16.60 0.00 0.00 2.32
189 190 1.442769 AGCACTGACGATCGCATTTT 58.557 45.000 16.60 0.00 0.00 1.82
190 191 1.806542 AGCACTGACGATCGCATTTTT 59.193 42.857 16.60 0.00 0.00 1.94
191 192 2.159653 AGCACTGACGATCGCATTTTTC 60.160 45.455 16.60 4.50 0.00 2.29
192 193 2.774007 CACTGACGATCGCATTTTTCC 58.226 47.619 16.60 0.00 0.00 3.13
193 194 1.393539 ACTGACGATCGCATTTTTCCG 59.606 47.619 16.60 3.05 0.00 4.30
194 195 1.658596 CTGACGATCGCATTTTTCCGA 59.341 47.619 16.60 0.00 37.91 4.55
195 196 2.070028 TGACGATCGCATTTTTCCGAA 58.930 42.857 16.60 0.00 37.00 4.30
196 197 2.675844 TGACGATCGCATTTTTCCGAAT 59.324 40.909 16.60 0.00 37.00 3.34
197 198 3.126171 TGACGATCGCATTTTTCCGAATT 59.874 39.130 16.60 0.00 37.00 2.17
198 199 3.680789 ACGATCGCATTTTTCCGAATTC 58.319 40.909 16.60 0.00 37.00 2.17
199 200 3.126171 ACGATCGCATTTTTCCGAATTCA 59.874 39.130 16.60 0.00 37.00 2.57
200 201 4.201910 ACGATCGCATTTTTCCGAATTCAT 60.202 37.500 16.60 0.00 37.00 2.57
201 202 4.734854 CGATCGCATTTTTCCGAATTCATT 59.265 37.500 0.26 0.00 37.00 2.57
202 203 5.229887 CGATCGCATTTTTCCGAATTCATTT 59.770 36.000 0.26 0.00 37.00 2.32
203 204 6.237542 CGATCGCATTTTTCCGAATTCATTTT 60.238 34.615 0.26 0.00 37.00 1.82
204 205 7.044380 CGATCGCATTTTTCCGAATTCATTTTA 60.044 33.333 0.26 0.00 37.00 1.52
205 206 7.504922 TCGCATTTTTCCGAATTCATTTTAG 57.495 32.000 6.22 0.00 0.00 1.85
206 207 7.309177 TCGCATTTTTCCGAATTCATTTTAGA 58.691 30.769 6.22 0.00 0.00 2.10
207 208 7.272515 TCGCATTTTTCCGAATTCATTTTAGAC 59.727 33.333 6.22 0.00 0.00 2.59
208 209 7.462724 CGCATTTTTCCGAATTCATTTTAGACC 60.463 37.037 6.22 0.00 0.00 3.85
209 210 7.201522 GCATTTTTCCGAATTCATTTTAGACCC 60.202 37.037 6.22 0.00 0.00 4.46
210 211 7.533289 TTTTTCCGAATTCATTTTAGACCCT 57.467 32.000 6.22 0.00 0.00 4.34
211 212 6.753107 TTTCCGAATTCATTTTAGACCCTC 57.247 37.500 6.22 0.00 0.00 4.30
212 213 4.439057 TCCGAATTCATTTTAGACCCTCG 58.561 43.478 6.22 0.00 0.00 4.63
213 214 4.160814 TCCGAATTCATTTTAGACCCTCGA 59.839 41.667 6.22 0.00 0.00 4.04
214 215 4.508124 CCGAATTCATTTTAGACCCTCGAG 59.492 45.833 5.13 5.13 0.00 4.04
215 216 4.025647 CGAATTCATTTTAGACCCTCGAGC 60.026 45.833 6.99 0.00 0.00 5.03
216 217 2.579207 TCATTTTAGACCCTCGAGCG 57.421 50.000 6.99 0.00 0.00 5.03
217 218 2.097036 TCATTTTAGACCCTCGAGCGA 58.903 47.619 6.99 0.00 0.00 4.93
218 219 2.693591 TCATTTTAGACCCTCGAGCGAT 59.306 45.455 6.99 0.00 0.00 4.58
219 220 2.579207 TTTTAGACCCTCGAGCGATG 57.421 50.000 6.99 0.00 0.00 3.84
220 221 1.471119 TTTAGACCCTCGAGCGATGT 58.529 50.000 6.99 0.57 0.00 3.06
221 222 0.738975 TTAGACCCTCGAGCGATGTG 59.261 55.000 6.99 0.00 0.00 3.21
222 223 1.725557 TAGACCCTCGAGCGATGTGC 61.726 60.000 6.99 0.00 46.98 4.57
231 232 3.549467 GCGATGTGCGTTCAGTGA 58.451 55.556 0.00 0.00 43.41 3.41
232 233 1.859398 GCGATGTGCGTTCAGTGAA 59.141 52.632 0.08 0.08 43.41 3.18
233 234 0.443869 GCGATGTGCGTTCAGTGAAT 59.556 50.000 9.18 0.00 43.41 2.57
234 235 1.787989 GCGATGTGCGTTCAGTGAATG 60.788 52.381 18.99 18.99 43.41 2.67
235 236 1.201954 CGATGTGCGTTCAGTGAATGG 60.202 52.381 23.30 13.32 34.64 3.16
236 237 2.076100 GATGTGCGTTCAGTGAATGGA 58.924 47.619 23.30 19.26 0.00 3.41
237 238 1.511850 TGTGCGTTCAGTGAATGGAG 58.488 50.000 23.30 10.62 30.08 3.86
238 239 0.798776 GTGCGTTCAGTGAATGGAGG 59.201 55.000 23.30 2.91 30.08 4.30
239 240 0.955428 TGCGTTCAGTGAATGGAGGC 60.955 55.000 23.30 12.54 46.61 4.70
240 241 1.970917 GCGTTCAGTGAATGGAGGCG 61.971 60.000 23.30 15.06 38.47 5.52
241 242 0.670546 CGTTCAGTGAATGGAGGCGT 60.671 55.000 16.09 0.00 0.00 5.68
242 243 1.523758 GTTCAGTGAATGGAGGCGTT 58.476 50.000 9.18 0.00 0.00 4.84
243 244 1.464997 GTTCAGTGAATGGAGGCGTTC 59.535 52.381 9.18 0.00 0.00 3.95
244 245 0.036388 TCAGTGAATGGAGGCGTTCC 60.036 55.000 0.00 1.61 46.98 3.62
251 252 2.182030 GGAGGCGTTCCAGTCGAG 59.818 66.667 3.58 0.00 46.01 4.04
252 253 2.637383 GGAGGCGTTCCAGTCGAGT 61.637 63.158 3.58 0.00 46.01 4.18
253 254 1.444553 GAGGCGTTCCAGTCGAGTG 60.445 63.158 13.55 13.55 33.74 3.51
254 255 3.112709 GGCGTTCCAGTCGAGTGC 61.113 66.667 15.06 2.77 0.00 4.40
255 256 2.355837 GCGTTCCAGTCGAGTGCA 60.356 61.111 15.06 0.00 0.00 4.57
256 257 1.954146 GCGTTCCAGTCGAGTGCAA 60.954 57.895 15.06 3.18 0.00 4.08
257 258 1.495584 GCGTTCCAGTCGAGTGCAAA 61.496 55.000 15.06 8.30 0.00 3.68
258 259 0.508641 CGTTCCAGTCGAGTGCAAAG 59.491 55.000 15.06 5.04 0.00 2.77
259 260 1.865865 GTTCCAGTCGAGTGCAAAGA 58.134 50.000 15.06 3.84 0.00 2.52
260 261 1.527311 GTTCCAGTCGAGTGCAAAGAC 59.473 52.381 15.06 8.81 35.30 3.01
261 262 0.318699 TCCAGTCGAGTGCAAAGACG 60.319 55.000 15.06 0.00 39.65 4.18
262 263 0.597637 CCAGTCGAGTGCAAAGACGT 60.598 55.000 15.06 0.00 39.65 4.34
263 264 0.778815 CAGTCGAGTGCAAAGACGTC 59.221 55.000 7.70 7.70 39.65 4.34
264 265 0.669077 AGTCGAGTGCAAAGACGTCT 59.331 50.000 13.58 13.58 39.65 4.18
265 266 0.778815 GTCGAGTGCAAAGACGTCTG 59.221 55.000 20.85 9.82 0.00 3.51
266 267 0.384309 TCGAGTGCAAAGACGTCTGT 59.616 50.000 20.85 11.54 0.00 3.41
267 268 0.504384 CGAGTGCAAAGACGTCTGTG 59.496 55.000 28.20 28.20 34.31 3.66
268 269 0.861837 GAGTGCAAAGACGTCTGTGG 59.138 55.000 31.78 19.37 31.81 4.17
269 270 0.178068 AGTGCAAAGACGTCTGTGGT 59.822 50.000 31.78 9.72 31.81 4.16
270 271 0.304705 GTGCAAAGACGTCTGTGGTG 59.695 55.000 31.78 21.35 31.81 4.17
271 272 0.176910 TGCAAAGACGTCTGTGGTGA 59.823 50.000 31.78 7.85 31.81 4.02
272 273 0.582005 GCAAAGACGTCTGTGGTGAC 59.418 55.000 31.78 15.06 31.81 3.67
273 274 1.806623 GCAAAGACGTCTGTGGTGACT 60.807 52.381 31.78 7.08 35.00 3.41
274 275 2.550978 CAAAGACGTCTGTGGTGACTT 58.449 47.619 25.51 8.34 35.00 3.01
275 276 2.510768 AAGACGTCTGTGGTGACTTC 57.489 50.000 20.85 0.00 36.06 3.01
276 277 0.311165 AGACGTCTGTGGTGACTTCG 59.689 55.000 19.30 0.00 39.32 3.79
277 278 0.030369 GACGTCTGTGGTGACTTCGT 59.970 55.000 8.70 0.00 35.00 3.85
278 279 0.030369 ACGTCTGTGGTGACTTCGTC 59.970 55.000 0.00 0.00 35.00 4.20
279 280 0.997226 CGTCTGTGGTGACTTCGTCG 60.997 60.000 0.00 0.00 34.95 5.12
280 281 0.309922 GTCTGTGGTGACTTCGTCGA 59.690 55.000 0.00 0.00 34.95 4.20
281 282 1.068472 GTCTGTGGTGACTTCGTCGAT 60.068 52.381 0.00 0.00 34.95 3.59
282 283 1.199327 TCTGTGGTGACTTCGTCGATC 59.801 52.381 0.00 0.00 34.95 3.69
283 284 1.200252 CTGTGGTGACTTCGTCGATCT 59.800 52.381 0.00 0.00 34.95 2.75
284 285 1.199327 TGTGGTGACTTCGTCGATCTC 59.801 52.381 0.00 0.00 34.95 2.75
285 286 1.199327 GTGGTGACTTCGTCGATCTCA 59.801 52.381 0.00 0.00 34.95 3.27
286 287 1.883926 TGGTGACTTCGTCGATCTCAA 59.116 47.619 0.00 0.00 34.95 3.02
287 288 2.095212 TGGTGACTTCGTCGATCTCAAG 60.095 50.000 0.00 0.00 34.95 3.02
288 289 2.161808 GGTGACTTCGTCGATCTCAAGA 59.838 50.000 0.00 0.00 34.95 3.02
289 290 3.181495 GGTGACTTCGTCGATCTCAAGAT 60.181 47.826 0.00 0.00 34.95 2.40
290 291 3.788694 GTGACTTCGTCGATCTCAAGATG 59.211 47.826 0.00 0.00 34.95 2.90
291 292 3.440522 TGACTTCGTCGATCTCAAGATGT 59.559 43.478 0.00 0.00 34.95 3.06
292 293 4.082733 TGACTTCGTCGATCTCAAGATGTT 60.083 41.667 0.00 0.00 34.95 2.71
293 294 4.169508 ACTTCGTCGATCTCAAGATGTTG 58.830 43.478 0.00 0.00 34.37 3.33
294 295 2.530177 TCGTCGATCTCAAGATGTTGC 58.470 47.619 0.00 0.00 34.37 4.17
295 296 1.253800 CGTCGATCTCAAGATGTTGCG 59.746 52.381 0.00 0.00 34.37 4.85
296 297 2.263077 GTCGATCTCAAGATGTTGCGT 58.737 47.619 0.00 0.00 34.37 5.24
297 298 2.280183 GTCGATCTCAAGATGTTGCGTC 59.720 50.000 0.00 0.00 34.37 5.19
298 299 1.253800 CGATCTCAAGATGTTGCGTCG 59.746 52.381 0.00 4.08 34.37 5.12
299 300 1.590238 GATCTCAAGATGTTGCGTCGG 59.410 52.381 0.00 0.00 34.37 4.79
300 301 0.317160 TCTCAAGATGTTGCGTCGGT 59.683 50.000 0.00 0.00 33.23 4.69
301 302 1.148310 CTCAAGATGTTGCGTCGGTT 58.852 50.000 0.00 0.00 33.23 4.44
302 303 1.126846 CTCAAGATGTTGCGTCGGTTC 59.873 52.381 0.00 0.00 33.23 3.62
303 304 0.179250 CAAGATGTTGCGTCGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
304 305 1.289109 AAGATGTTGCGTCGGTTCGG 61.289 55.000 0.00 0.00 0.00 4.30
305 306 2.025418 GATGTTGCGTCGGTTCGGT 61.025 57.895 0.00 0.00 0.00 4.69
306 307 0.733566 GATGTTGCGTCGGTTCGGTA 60.734 55.000 0.00 0.00 0.00 4.02
307 308 0.108520 ATGTTGCGTCGGTTCGGTAT 60.109 50.000 0.00 0.00 0.00 2.73
308 309 0.733566 TGTTGCGTCGGTTCGGTATC 60.734 55.000 0.00 0.00 0.00 2.24
309 310 0.457337 GTTGCGTCGGTTCGGTATCT 60.457 55.000 0.00 0.00 0.00 1.98
310 311 0.179156 TTGCGTCGGTTCGGTATCTC 60.179 55.000 0.00 0.00 0.00 2.75
311 312 1.653533 GCGTCGGTTCGGTATCTCG 60.654 63.158 0.00 0.00 0.00 4.04
312 313 1.010350 CGTCGGTTCGGTATCTCGG 60.010 63.158 0.00 0.00 0.00 4.63
313 314 1.431488 CGTCGGTTCGGTATCTCGGA 61.431 60.000 0.00 0.00 0.00 4.55
314 315 0.307146 GTCGGTTCGGTATCTCGGAG 59.693 60.000 0.00 0.00 0.00 4.63
315 316 0.816825 TCGGTTCGGTATCTCGGAGG 60.817 60.000 4.96 0.00 0.00 4.30
316 317 1.099879 CGGTTCGGTATCTCGGAGGT 61.100 60.000 4.96 0.00 0.00 3.85
317 318 0.384669 GGTTCGGTATCTCGGAGGTG 59.615 60.000 4.96 0.00 0.00 4.00
318 319 0.248949 GTTCGGTATCTCGGAGGTGC 60.249 60.000 4.96 0.81 0.00 5.01
319 320 0.395311 TTCGGTATCTCGGAGGTGCT 60.395 55.000 6.32 0.00 0.00 4.40
320 321 0.818445 TCGGTATCTCGGAGGTGCTC 60.818 60.000 6.32 0.00 0.00 4.26
321 322 1.101635 CGGTATCTCGGAGGTGCTCA 61.102 60.000 6.32 0.00 31.08 4.26
322 323 1.333177 GGTATCTCGGAGGTGCTCAT 58.667 55.000 6.32 0.00 31.08 2.90
323 324 2.515854 GGTATCTCGGAGGTGCTCATA 58.484 52.381 6.32 0.00 31.08 2.15
324 325 2.891580 GGTATCTCGGAGGTGCTCATAA 59.108 50.000 6.32 0.00 31.08 1.90
325 326 3.057174 GGTATCTCGGAGGTGCTCATAAG 60.057 52.174 6.32 0.00 31.08 1.73
326 327 1.403814 TCTCGGAGGTGCTCATAAGG 58.596 55.000 4.96 0.00 31.08 2.69
327 328 1.063942 TCTCGGAGGTGCTCATAAGGA 60.064 52.381 4.96 0.00 31.08 3.36
328 329 1.967066 CTCGGAGGTGCTCATAAGGAT 59.033 52.381 0.00 0.00 31.08 3.24
329 330 3.157881 CTCGGAGGTGCTCATAAGGATA 58.842 50.000 0.00 0.00 31.08 2.59
330 331 3.157881 TCGGAGGTGCTCATAAGGATAG 58.842 50.000 0.00 0.00 31.08 2.08
331 332 3.157881 CGGAGGTGCTCATAAGGATAGA 58.842 50.000 0.00 0.00 31.08 1.98
332 333 3.192422 CGGAGGTGCTCATAAGGATAGAG 59.808 52.174 0.00 0.00 31.08 2.43
333 334 4.156477 GGAGGTGCTCATAAGGATAGAGT 58.844 47.826 0.00 0.00 31.08 3.24
334 335 4.021544 GGAGGTGCTCATAAGGATAGAGTG 60.022 50.000 0.00 0.00 31.08 3.51
335 336 4.809193 AGGTGCTCATAAGGATAGAGTGA 58.191 43.478 0.00 0.00 0.00 3.41
336 337 4.832266 AGGTGCTCATAAGGATAGAGTGAG 59.168 45.833 0.00 0.00 39.35 3.51
337 338 4.586841 GGTGCTCATAAGGATAGAGTGAGT 59.413 45.833 0.00 0.00 38.75 3.41
338 339 5.508825 GGTGCTCATAAGGATAGAGTGAGTG 60.509 48.000 0.00 0.00 38.75 3.51
339 340 5.068460 GTGCTCATAAGGATAGAGTGAGTGT 59.932 44.000 0.00 0.00 38.75 3.55
340 341 5.068329 TGCTCATAAGGATAGAGTGAGTGTG 59.932 44.000 0.00 0.00 38.75 3.82
341 342 5.521906 TCATAAGGATAGAGTGAGTGTGC 57.478 43.478 0.00 0.00 0.00 4.57
342 343 4.956075 TCATAAGGATAGAGTGAGTGTGCA 59.044 41.667 0.00 0.00 0.00 4.57
343 344 3.601443 AAGGATAGAGTGAGTGTGCAC 57.399 47.619 10.75 10.75 39.05 4.57
344 345 1.474478 AGGATAGAGTGAGTGTGCACG 59.526 52.381 13.13 0.00 43.42 5.34
345 346 1.202582 GGATAGAGTGAGTGTGCACGT 59.797 52.381 13.13 0.97 43.42 4.49
346 347 2.352814 GGATAGAGTGAGTGTGCACGTT 60.353 50.000 13.13 1.94 43.42 3.99
347 348 2.417339 TAGAGTGAGTGTGCACGTTC 57.583 50.000 13.13 12.54 43.42 3.95
348 349 0.459899 AGAGTGAGTGTGCACGTTCA 59.540 50.000 16.41 16.41 43.42 3.18
349 350 1.069204 AGAGTGAGTGTGCACGTTCAT 59.931 47.619 21.32 12.86 43.42 2.57
350 351 2.296190 AGAGTGAGTGTGCACGTTCATA 59.704 45.455 21.32 0.00 43.42 2.15
351 352 3.056536 AGAGTGAGTGTGCACGTTCATAT 60.057 43.478 21.32 15.00 43.42 1.78
352 353 2.995939 AGTGAGTGTGCACGTTCATATG 59.004 45.455 21.32 0.00 43.42 1.78
353 354 2.094258 GTGAGTGTGCACGTTCATATGG 59.906 50.000 21.32 0.00 36.20 2.74
354 355 2.289382 TGAGTGTGCACGTTCATATGGT 60.289 45.455 16.41 0.00 36.20 3.55
355 356 2.742053 GAGTGTGCACGTTCATATGGTT 59.258 45.455 13.13 0.00 36.20 3.67
356 357 3.930229 GAGTGTGCACGTTCATATGGTTA 59.070 43.478 13.13 0.00 36.20 2.85
357 358 4.320023 AGTGTGCACGTTCATATGGTTAA 58.680 39.130 13.13 0.00 36.20 2.01
358 359 4.391830 AGTGTGCACGTTCATATGGTTAAG 59.608 41.667 13.13 0.00 36.20 1.85
359 360 4.153475 GTGTGCACGTTCATATGGTTAAGT 59.847 41.667 13.13 0.00 0.00 2.24
360 361 4.153296 TGTGCACGTTCATATGGTTAAGTG 59.847 41.667 13.13 8.54 0.00 3.16
361 362 4.153475 GTGCACGTTCATATGGTTAAGTGT 59.847 41.667 0.00 0.00 0.00 3.55
362 363 5.349270 GTGCACGTTCATATGGTTAAGTGTA 59.651 40.000 0.00 4.87 0.00 2.90
363 364 6.036735 GTGCACGTTCATATGGTTAAGTGTAT 59.963 38.462 0.00 0.00 0.00 2.29
364 365 6.036626 TGCACGTTCATATGGTTAAGTGTATG 59.963 38.462 2.13 0.00 0.00 2.39
365 366 6.036735 GCACGTTCATATGGTTAAGTGTATGT 59.963 38.462 2.13 0.00 0.00 2.29
366 367 7.223193 GCACGTTCATATGGTTAAGTGTATGTA 59.777 37.037 2.13 0.00 0.00 2.29
367 368 8.537223 CACGTTCATATGGTTAAGTGTATGTAC 58.463 37.037 2.13 0.00 0.00 2.90
368 369 7.433131 ACGTTCATATGGTTAAGTGTATGTACG 59.567 37.037 19.62 19.62 45.43 3.67
369 370 7.433131 CGTTCATATGGTTAAGTGTATGTACGT 59.567 37.037 16.33 0.00 40.36 3.57
370 371 8.537223 GTTCATATGGTTAAGTGTATGTACGTG 58.463 37.037 2.13 0.00 0.00 4.49
371 372 7.774134 TCATATGGTTAAGTGTATGTACGTGT 58.226 34.615 2.13 0.00 0.00 4.49
372 373 8.901793 TCATATGGTTAAGTGTATGTACGTGTA 58.098 33.333 2.13 0.00 0.00 2.90
373 374 9.687210 CATATGGTTAAGTGTATGTACGTGTAT 57.313 33.333 0.00 0.00 0.00 2.29
374 375 7.997107 ATGGTTAAGTGTATGTACGTGTATG 57.003 36.000 0.00 0.00 0.00 2.39
375 376 6.923012 TGGTTAAGTGTATGTACGTGTATGT 58.077 36.000 0.00 0.00 0.00 2.29
376 377 6.807720 TGGTTAAGTGTATGTACGTGTATGTG 59.192 38.462 0.00 0.00 0.00 3.21
377 378 7.028962 GGTTAAGTGTATGTACGTGTATGTGA 58.971 38.462 0.00 0.00 0.00 3.58
378 379 7.541783 GGTTAAGTGTATGTACGTGTATGTGAA 59.458 37.037 0.00 0.00 0.00 3.18
379 380 9.079833 GTTAAGTGTATGTACGTGTATGTGAAT 57.920 33.333 0.00 0.00 0.00 2.57
382 383 9.459640 AAGTGTATGTACGTGTATGTGAATATC 57.540 33.333 0.00 0.00 0.00 1.63
383 384 8.847196 AGTGTATGTACGTGTATGTGAATATCT 58.153 33.333 0.00 0.00 0.00 1.98
391 392 8.942338 ACGTGTATGTGAATATCTATGTTTGT 57.058 30.769 0.00 0.00 0.00 2.83
392 393 9.378551 ACGTGTATGTGAATATCTATGTTTGTT 57.621 29.630 0.00 0.00 0.00 2.83
451 452 3.778954 AAAAGAGAAGGTGGGAGTGAG 57.221 47.619 0.00 0.00 0.00 3.51
452 453 2.704190 AAGAGAAGGTGGGAGTGAGA 57.296 50.000 0.00 0.00 0.00 3.27
453 454 2.704190 AGAGAAGGTGGGAGTGAGAA 57.296 50.000 0.00 0.00 0.00 2.87
454 455 2.977808 AGAGAAGGTGGGAGTGAGAAA 58.022 47.619 0.00 0.00 0.00 2.52
455 456 3.318313 AGAGAAGGTGGGAGTGAGAAAA 58.682 45.455 0.00 0.00 0.00 2.29
456 457 3.326297 AGAGAAGGTGGGAGTGAGAAAAG 59.674 47.826 0.00 0.00 0.00 2.27
457 458 2.373502 AGAAGGTGGGAGTGAGAAAAGG 59.626 50.000 0.00 0.00 0.00 3.11
458 459 1.821088 AGGTGGGAGTGAGAAAAGGT 58.179 50.000 0.00 0.00 0.00 3.50
459 460 2.986050 AGGTGGGAGTGAGAAAAGGTA 58.014 47.619 0.00 0.00 0.00 3.08
460 461 2.638363 AGGTGGGAGTGAGAAAAGGTAC 59.362 50.000 0.00 0.00 0.00 3.34
461 462 2.290134 GGTGGGAGTGAGAAAAGGTACC 60.290 54.545 2.73 2.73 0.00 3.34
462 463 1.982958 TGGGAGTGAGAAAAGGTACCC 59.017 52.381 8.74 0.00 36.92 3.69
463 464 1.066358 GGGAGTGAGAAAAGGTACCCG 60.066 57.143 8.74 0.00 0.00 5.28
464 465 1.622312 GGAGTGAGAAAAGGTACCCGT 59.378 52.381 8.74 0.00 0.00 5.28
465 466 2.038164 GGAGTGAGAAAAGGTACCCGTT 59.962 50.000 8.74 2.34 0.00 4.44
466 467 3.495629 GGAGTGAGAAAAGGTACCCGTTT 60.496 47.826 8.74 9.64 37.87 3.60
467 468 3.736720 AGTGAGAAAAGGTACCCGTTTC 58.263 45.455 22.63 22.63 46.84 2.78
485 486 4.035102 GGACAAAGCCGCTCCCCT 62.035 66.667 0.00 0.00 0.00 4.79
486 487 2.747855 GACAAAGCCGCTCCCCTG 60.748 66.667 0.00 0.00 0.00 4.45
487 488 3.553095 GACAAAGCCGCTCCCCTGT 62.553 63.158 0.00 0.00 0.00 4.00
488 489 3.058160 CAAAGCCGCTCCCCTGTG 61.058 66.667 0.00 0.00 0.00 3.66
513 514 1.606668 TCCACAAAATGAACAGACGGC 59.393 47.619 0.00 0.00 0.00 5.68
515 516 1.608590 CACAAAATGAACAGACGGCCT 59.391 47.619 0.00 0.00 0.00 5.19
534 535 4.182433 TGGCGGGTCAGCACACAA 62.182 61.111 0.00 0.00 39.27 3.33
586 587 4.115199 GCCGCCTCCATTCCACCT 62.115 66.667 0.00 0.00 0.00 4.00
605 606 3.179265 AAACTCGATCGCGCACGG 61.179 61.111 11.09 14.56 40.63 4.94
634 635 1.143073 GTCTCTCTCCTCTCCTCTCCC 59.857 61.905 0.00 0.00 0.00 4.30
710 718 2.640332 TGCTCACCATTTACCACCACTA 59.360 45.455 0.00 0.00 0.00 2.74
719 727 0.616679 TACCACCACTACCCTGCTCC 60.617 60.000 0.00 0.00 0.00 4.70
868 887 4.525949 GTACCCCGCGCTCCTTCC 62.526 72.222 5.56 0.00 0.00 3.46
896 915 1.815421 GATTCGCGGCACATCCACT 60.815 57.895 6.13 0.00 34.01 4.00
1077 1096 3.000727 CCACACCGTTTCTTGGATACTC 58.999 50.000 0.00 0.00 37.61 2.59
1107 1126 2.742372 GCACGATTCAGTGGCGGT 60.742 61.111 0.00 0.00 42.09 5.68
1127 1146 3.009140 CGATGATGCCACTGCGAC 58.991 61.111 0.00 0.00 41.78 5.19
1212 1231 0.035820 GGGCACTTGAATCCGGTACA 60.036 55.000 0.00 0.00 0.00 2.90
1242 1261 2.297129 GGTGGAGCTGGAGAGGCTT 61.297 63.158 0.00 0.00 40.40 4.35
1284 1303 0.253610 TTGTCAACTTGGTGGTCCGT 59.746 50.000 0.00 0.00 36.30 4.69
1299 1318 2.338620 CGTGGCTTGTCGGACTCA 59.661 61.111 9.88 0.44 0.00 3.41
1322 1341 0.816421 ACAGCGGTGCGGTTTTACTT 60.816 50.000 15.82 0.00 32.29 2.24
1400 1419 3.748048 GTGAGCTTGCTGTTTGTAGATGA 59.252 43.478 0.00 0.00 0.00 2.92
1467 1486 1.450134 GGTGGCACTGCATCGATCA 60.450 57.895 18.45 0.00 0.00 2.92
1575 1594 0.997196 GCCGTGAGTTTGGTATCGAC 59.003 55.000 0.00 0.00 0.00 4.20
1715 1734 5.448768 GGATCTCTGCATTGTGTCAATCAAG 60.449 44.000 0.00 0.00 0.00 3.02
2320 2339 5.060662 TGACCGATACAGCTATAATCAGC 57.939 43.478 0.00 0.00 42.12 4.26
2990 3009 3.550820 TGAAGAACAAGTAGCAGCCAAA 58.449 40.909 0.00 0.00 0.00 3.28
3018 3037 3.770388 GGAGAGGTTTAGCCACTAGAAGT 59.230 47.826 0.00 0.00 38.32 3.01
3070 3089 3.054802 ACCTCCAGAGCTTCAATAGTTGG 60.055 47.826 0.00 0.00 0.00 3.77
3135 3155 2.373169 TCCTCCCTTTATGCATAGCTGG 59.627 50.000 6.50 10.00 0.00 4.85
3153 3173 1.289380 GACCAGACGTCCAGACCAC 59.711 63.158 13.01 0.00 35.23 4.16
3244 3317 4.937620 TGCTAGCCTTTGAGATGTAAACAG 59.062 41.667 13.29 0.00 0.00 3.16
3256 3329 6.934083 TGAGATGTAAACAGCAGACATTTACA 59.066 34.615 10.28 10.28 46.94 2.41
3257 3330 7.443879 TGAGATGTAAACAGCAGACATTTACAA 59.556 33.333 11.53 0.00 46.36 2.41
3262 3335 4.357918 ACAGCAGACATTTACAACCTCT 57.642 40.909 0.00 0.00 0.00 3.69
3286 3359 7.543868 TCTGTTTCAAAATAAGTGTTGTGGTTG 59.456 33.333 0.00 0.00 0.00 3.77
3354 3427 3.826729 GGGAGTAATTGTGAAGCAAAGGT 59.173 43.478 0.00 0.00 40.91 3.50
3385 3458 5.808366 TGAACAAGTGGACTGTCTAAGAT 57.192 39.130 7.85 0.00 0.00 2.40
3388 3461 7.732025 TGAACAAGTGGACTGTCTAAGATTTA 58.268 34.615 7.85 0.00 0.00 1.40
3502 3575 5.619981 GCCAAAAGCAATGTAAGGTAGTGAG 60.620 44.000 0.00 0.00 42.97 3.51
3584 3657 7.877612 TCTCGTACATGCATATTTGTCCAATAT 59.122 33.333 0.00 0.00 38.44 1.28
3618 3691 6.483640 ACACTTCTCTAAAAATCACAGGTGTC 59.516 38.462 0.00 0.00 0.00 3.67
3640 3713 3.873361 CGTCTCCAATGCATCTACAACAT 59.127 43.478 0.00 0.00 0.00 2.71
3729 3802 6.128172 GCATACAATATAATCCTGAGGTGCAC 60.128 42.308 8.80 8.80 0.00 4.57
3745 3818 1.347378 TGCACATGACTTCTGGCACTA 59.653 47.619 0.00 0.00 0.00 2.74
3767 3840 9.734620 CACTACTTTTCATTCAACTTCAATTGA 57.265 29.630 3.38 3.38 36.80 2.57
3900 3978 1.956477 GGAAGTTGCAACATCAGGTGT 59.044 47.619 29.68 7.43 44.84 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.575694 TCACGCAAAAGCACAATTGT 57.424 40.000 4.92 4.92 0.00 2.71
9 10 2.347846 GCTTCACGCAAAAGCACAATTG 60.348 45.455 3.24 3.24 46.63 2.32
10 11 1.860326 GCTTCACGCAAAAGCACAATT 59.140 42.857 10.97 0.00 46.63 2.32
11 12 1.490621 GCTTCACGCAAAAGCACAAT 58.509 45.000 10.97 0.00 46.63 2.71
12 13 2.956469 GCTTCACGCAAAAGCACAA 58.044 47.368 10.97 0.00 46.63 3.33
13 14 4.707988 GCTTCACGCAAAAGCACA 57.292 50.000 10.97 0.00 46.63 4.57
22 23 4.595629 CACAACTGTGCTTCACGC 57.404 55.556 0.00 0.00 39.39 5.34
31 32 4.486125 AATTTTTGGGAAGCACAACTGT 57.514 36.364 0.00 0.00 0.00 3.55
32 33 6.917217 TTTAATTTTTGGGAAGCACAACTG 57.083 33.333 0.00 0.00 0.00 3.16
33 34 7.929941 TTTTTAATTTTTGGGAAGCACAACT 57.070 28.000 0.00 0.00 0.00 3.16
77 78 4.869297 CACCACATCTGTGCTTTTCAAAAA 59.131 37.500 4.77 0.00 44.34 1.94
78 79 4.081752 ACACCACATCTGTGCTTTTCAAAA 60.082 37.500 4.77 0.00 44.34 2.44
79 80 3.446873 ACACCACATCTGTGCTTTTCAAA 59.553 39.130 4.77 0.00 44.34 2.69
80 81 3.023119 ACACCACATCTGTGCTTTTCAA 58.977 40.909 4.77 0.00 44.34 2.69
81 82 2.653726 ACACCACATCTGTGCTTTTCA 58.346 42.857 4.77 0.00 44.34 2.69
82 83 3.715628 AACACCACATCTGTGCTTTTC 57.284 42.857 4.77 0.00 44.34 2.29
83 84 3.195396 ACAAACACCACATCTGTGCTTTT 59.805 39.130 4.77 1.55 44.34 2.27
84 85 2.760092 ACAAACACCACATCTGTGCTTT 59.240 40.909 4.77 0.20 44.34 3.51
85 86 2.378038 ACAAACACCACATCTGTGCTT 58.622 42.857 4.77 0.00 44.34 3.91
86 87 2.057137 ACAAACACCACATCTGTGCT 57.943 45.000 4.77 0.00 44.34 4.40
87 88 2.869233 AACAAACACCACATCTGTGC 57.131 45.000 4.77 0.00 44.34 4.57
88 89 4.142403 ACAGAAACAAACACCACATCTGTG 60.142 41.667 4.85 3.28 43.03 3.66
89 90 4.016444 ACAGAAACAAACACCACATCTGT 58.984 39.130 0.00 0.00 40.69 3.41
90 91 4.637483 ACAGAAACAAACACCACATCTG 57.363 40.909 0.00 0.00 38.91 2.90
91 92 5.659440 AAACAGAAACAAACACCACATCT 57.341 34.783 0.00 0.00 0.00 2.90
92 93 6.791303 TCTAAACAGAAACAAACACCACATC 58.209 36.000 0.00 0.00 0.00 3.06
93 94 6.767524 TCTAAACAGAAACAAACACCACAT 57.232 33.333 0.00 0.00 0.00 3.21
94 95 6.405286 CCATCTAAACAGAAACAAACACCACA 60.405 38.462 0.00 0.00 0.00 4.17
95 96 5.977129 CCATCTAAACAGAAACAAACACCAC 59.023 40.000 0.00 0.00 0.00 4.16
96 97 5.654650 ACCATCTAAACAGAAACAAACACCA 59.345 36.000 0.00 0.00 0.00 4.17
97 98 6.144078 ACCATCTAAACAGAAACAAACACC 57.856 37.500 0.00 0.00 0.00 4.16
98 99 9.233232 CTTAACCATCTAAACAGAAACAAACAC 57.767 33.333 0.00 0.00 0.00 3.32
99 100 8.962679 ACTTAACCATCTAAACAGAAACAAACA 58.037 29.630 0.00 0.00 0.00 2.83
100 101 9.797556 AACTTAACCATCTAAACAGAAACAAAC 57.202 29.630 0.00 0.00 0.00 2.93
103 104 9.403583 AGAAACTTAACCATCTAAACAGAAACA 57.596 29.630 0.00 0.00 0.00 2.83
106 107 9.403583 ACAAGAAACTTAACCATCTAAACAGAA 57.596 29.630 0.00 0.00 0.00 3.02
107 108 8.836413 CACAAGAAACTTAACCATCTAAACAGA 58.164 33.333 0.00 0.00 0.00 3.41
108 109 8.836413 TCACAAGAAACTTAACCATCTAAACAG 58.164 33.333 0.00 0.00 0.00 3.16
109 110 8.740123 TCACAAGAAACTTAACCATCTAAACA 57.260 30.769 0.00 0.00 0.00 2.83
110 111 9.612620 CATCACAAGAAACTTAACCATCTAAAC 57.387 33.333 0.00 0.00 0.00 2.01
111 112 9.567776 TCATCACAAGAAACTTAACCATCTAAA 57.432 29.630 0.00 0.00 0.00 1.85
112 113 9.567776 TTCATCACAAGAAACTTAACCATCTAA 57.432 29.630 0.00 0.00 0.00 2.10
113 114 9.567776 TTTCATCACAAGAAACTTAACCATCTA 57.432 29.630 0.00 0.00 30.56 1.98
114 115 8.463930 TTTCATCACAAGAAACTTAACCATCT 57.536 30.769 0.00 0.00 30.56 2.90
115 116 9.346725 GATTTCATCACAAGAAACTTAACCATC 57.653 33.333 0.00 0.00 37.76 3.51
116 117 8.859090 TGATTTCATCACAAGAAACTTAACCAT 58.141 29.630 0.00 0.00 37.76 3.55
117 118 8.231692 TGATTTCATCACAAGAAACTTAACCA 57.768 30.769 0.00 0.00 37.76 3.67
118 119 8.968242 GTTGATTTCATCACAAGAAACTTAACC 58.032 33.333 0.00 0.00 39.39 2.85
119 120 8.968242 GGTTGATTTCATCACAAGAAACTTAAC 58.032 33.333 0.00 0.00 39.39 2.01
120 121 8.141268 GGGTTGATTTCATCACAAGAAACTTAA 58.859 33.333 0.00 0.00 39.39 1.85
121 122 7.286546 TGGGTTGATTTCATCACAAGAAACTTA 59.713 33.333 0.00 0.00 39.39 2.24
122 123 6.098124 TGGGTTGATTTCATCACAAGAAACTT 59.902 34.615 0.00 0.00 39.39 2.66
123 124 5.598005 TGGGTTGATTTCATCACAAGAAACT 59.402 36.000 0.00 0.00 39.39 2.66
124 125 5.841810 TGGGTTGATTTCATCACAAGAAAC 58.158 37.500 0.00 0.00 39.39 2.78
125 126 6.477053 TTGGGTTGATTTCATCACAAGAAA 57.523 33.333 2.87 0.00 39.39 2.52
126 127 6.477053 TTTGGGTTGATTTCATCACAAGAA 57.523 33.333 6.45 0.00 39.33 2.52
127 128 6.477053 TTTTGGGTTGATTTCATCACAAGA 57.523 33.333 6.45 1.01 39.33 3.02
159 160 3.008330 TCGTCAGTGCTAAGTCTAGGAC 58.992 50.000 0.00 0.00 44.58 3.85
160 161 3.345508 TCGTCAGTGCTAAGTCTAGGA 57.654 47.619 0.00 0.00 0.00 2.94
161 162 3.303461 CGATCGTCAGTGCTAAGTCTAGG 60.303 52.174 7.03 0.00 0.00 3.02
162 163 3.846744 GCGATCGTCAGTGCTAAGTCTAG 60.847 52.174 17.81 0.00 0.00 2.43
163 164 2.031807 GCGATCGTCAGTGCTAAGTCTA 59.968 50.000 17.81 0.00 0.00 2.59
164 165 1.202200 GCGATCGTCAGTGCTAAGTCT 60.202 52.381 17.81 0.00 0.00 3.24
165 166 1.192793 GCGATCGTCAGTGCTAAGTC 58.807 55.000 17.81 0.00 0.00 3.01
166 167 0.526211 TGCGATCGTCAGTGCTAAGT 59.474 50.000 17.81 0.00 0.00 2.24
167 168 1.845266 ATGCGATCGTCAGTGCTAAG 58.155 50.000 17.81 0.00 0.00 2.18
168 169 2.293677 AATGCGATCGTCAGTGCTAA 57.706 45.000 17.81 0.00 0.00 3.09
169 170 2.293677 AAATGCGATCGTCAGTGCTA 57.706 45.000 17.81 0.00 0.00 3.49
170 171 1.442769 AAAATGCGATCGTCAGTGCT 58.557 45.000 17.81 3.49 0.00 4.40
171 172 2.169179 GAAAAATGCGATCGTCAGTGC 58.831 47.619 17.81 0.00 0.00 4.40
172 173 2.774007 GGAAAAATGCGATCGTCAGTG 58.226 47.619 17.81 0.00 0.00 3.66
173 174 1.393539 CGGAAAAATGCGATCGTCAGT 59.606 47.619 17.81 11.51 0.00 3.41
174 175 1.658596 TCGGAAAAATGCGATCGTCAG 59.341 47.619 17.81 5.99 0.00 3.51
175 176 1.715993 TCGGAAAAATGCGATCGTCA 58.284 45.000 17.81 15.20 0.00 4.35
176 177 2.798834 TTCGGAAAAATGCGATCGTC 57.201 45.000 17.81 9.69 0.00 4.20
177 178 3.126171 TGAATTCGGAAAAATGCGATCGT 59.874 39.130 17.81 0.00 0.00 3.73
178 179 3.679725 TGAATTCGGAAAAATGCGATCG 58.320 40.909 11.69 11.69 0.00 3.69
179 180 6.573617 AAATGAATTCGGAAAAATGCGATC 57.426 33.333 0.04 0.00 0.00 3.69
180 181 6.966435 AAAATGAATTCGGAAAAATGCGAT 57.034 29.167 0.04 0.00 0.00 4.58
181 182 7.272515 GTCTAAAATGAATTCGGAAAAATGCGA 59.727 33.333 0.04 0.00 0.00 5.10
182 183 7.383361 GTCTAAAATGAATTCGGAAAAATGCG 58.617 34.615 0.04 0.00 0.00 4.73
183 184 7.201522 GGGTCTAAAATGAATTCGGAAAAATGC 60.202 37.037 0.04 0.00 0.00 3.56
184 185 8.034804 AGGGTCTAAAATGAATTCGGAAAAATG 58.965 33.333 0.04 0.00 0.00 2.32
185 186 8.134202 AGGGTCTAAAATGAATTCGGAAAAAT 57.866 30.769 0.04 0.00 0.00 1.82
186 187 7.533289 AGGGTCTAAAATGAATTCGGAAAAA 57.467 32.000 0.04 0.00 0.00 1.94
187 188 6.128117 CGAGGGTCTAAAATGAATTCGGAAAA 60.128 38.462 0.04 0.00 0.00 2.29
188 189 5.353123 CGAGGGTCTAAAATGAATTCGGAAA 59.647 40.000 0.04 0.00 0.00 3.13
189 190 4.873827 CGAGGGTCTAAAATGAATTCGGAA 59.126 41.667 0.04 0.00 0.00 4.30
190 191 4.160814 TCGAGGGTCTAAAATGAATTCGGA 59.839 41.667 0.04 0.00 0.00 4.55
191 192 4.439057 TCGAGGGTCTAAAATGAATTCGG 58.561 43.478 0.04 0.00 0.00 4.30
192 193 4.025647 GCTCGAGGGTCTAAAATGAATTCG 60.026 45.833 15.58 0.00 0.00 3.34
193 194 4.025647 CGCTCGAGGGTCTAAAATGAATTC 60.026 45.833 20.59 0.00 0.00 2.17
194 195 3.871594 CGCTCGAGGGTCTAAAATGAATT 59.128 43.478 20.59 0.00 0.00 2.17
195 196 3.132289 TCGCTCGAGGGTCTAAAATGAAT 59.868 43.478 26.49 0.00 0.00 2.57
196 197 2.494471 TCGCTCGAGGGTCTAAAATGAA 59.506 45.455 26.49 2.91 0.00 2.57
197 198 2.097036 TCGCTCGAGGGTCTAAAATGA 58.903 47.619 26.49 3.64 0.00 2.57
198 199 2.579207 TCGCTCGAGGGTCTAAAATG 57.421 50.000 26.49 0.00 0.00 2.32
199 200 2.431057 ACATCGCTCGAGGGTCTAAAAT 59.569 45.455 26.49 10.81 0.00 1.82
200 201 1.822990 ACATCGCTCGAGGGTCTAAAA 59.177 47.619 26.49 8.92 0.00 1.52
201 202 1.134367 CACATCGCTCGAGGGTCTAAA 59.866 52.381 26.49 9.64 0.00 1.85
202 203 0.738975 CACATCGCTCGAGGGTCTAA 59.261 55.000 26.49 10.01 0.00 2.10
203 204 1.725557 GCACATCGCTCGAGGGTCTA 61.726 60.000 26.49 10.37 37.77 2.59
204 205 3.069980 GCACATCGCTCGAGGGTCT 62.070 63.158 26.49 14.09 37.77 3.85
205 206 2.583593 GCACATCGCTCGAGGGTC 60.584 66.667 26.49 3.93 37.77 4.46
206 207 4.498520 CGCACATCGCTCGAGGGT 62.499 66.667 26.49 13.00 39.08 4.34
207 208 3.989698 AACGCACATCGCTCGAGGG 62.990 63.158 22.60 22.60 43.23 4.30
208 209 2.507102 AACGCACATCGCTCGAGG 60.507 61.111 15.58 4.50 43.23 4.63
209 210 1.737196 CTGAACGCACATCGCTCGAG 61.737 60.000 8.45 8.45 43.23 4.04
210 211 1.801512 CTGAACGCACATCGCTCGA 60.802 57.895 0.00 0.00 43.23 4.04
211 212 2.088763 ACTGAACGCACATCGCTCG 61.089 57.895 0.00 0.00 43.23 5.03
212 213 1.008875 TCACTGAACGCACATCGCTC 61.009 55.000 0.00 0.00 43.23 5.03
213 214 0.599991 TTCACTGAACGCACATCGCT 60.600 50.000 0.00 0.00 43.23 4.93
214 215 0.443869 ATTCACTGAACGCACATCGC 59.556 50.000 0.00 0.00 43.23 4.58
215 216 1.201954 CCATTCACTGAACGCACATCG 60.202 52.381 0.00 0.00 45.38 3.84
216 217 2.076100 TCCATTCACTGAACGCACATC 58.924 47.619 0.00 0.00 0.00 3.06
217 218 2.079158 CTCCATTCACTGAACGCACAT 58.921 47.619 0.00 0.00 0.00 3.21
218 219 1.511850 CTCCATTCACTGAACGCACA 58.488 50.000 0.00 0.00 0.00 4.57
219 220 0.798776 CCTCCATTCACTGAACGCAC 59.201 55.000 0.00 0.00 0.00 5.34
220 221 0.955428 GCCTCCATTCACTGAACGCA 60.955 55.000 0.00 0.00 0.00 5.24
221 222 1.796796 GCCTCCATTCACTGAACGC 59.203 57.895 0.00 0.00 0.00 4.84
222 223 0.670546 ACGCCTCCATTCACTGAACG 60.671 55.000 0.00 0.00 0.00 3.95
223 224 1.464997 GAACGCCTCCATTCACTGAAC 59.535 52.381 0.00 0.00 0.00 3.18
224 225 1.610624 GGAACGCCTCCATTCACTGAA 60.611 52.381 0.00 0.00 44.67 3.02
225 226 0.036388 GGAACGCCTCCATTCACTGA 60.036 55.000 0.00 0.00 44.67 3.41
226 227 2.471255 GGAACGCCTCCATTCACTG 58.529 57.895 0.00 0.00 44.67 3.66
234 235 2.182030 CTCGACTGGAACGCCTCC 59.818 66.667 0.00 0.00 45.64 4.30
235 236 1.444553 CACTCGACTGGAACGCCTC 60.445 63.158 0.00 0.00 34.31 4.70
236 237 2.651361 CACTCGACTGGAACGCCT 59.349 61.111 0.00 0.00 34.31 5.52
237 238 3.112709 GCACTCGACTGGAACGCC 61.113 66.667 0.00 0.00 0.00 5.68
238 239 1.495584 TTTGCACTCGACTGGAACGC 61.496 55.000 0.00 0.00 0.00 4.84
239 240 0.508641 CTTTGCACTCGACTGGAACG 59.491 55.000 0.00 0.00 0.00 3.95
240 241 1.527311 GTCTTTGCACTCGACTGGAAC 59.473 52.381 0.00 0.00 0.00 3.62
241 242 1.865865 GTCTTTGCACTCGACTGGAA 58.134 50.000 0.00 0.00 0.00 3.53
242 243 0.318699 CGTCTTTGCACTCGACTGGA 60.319 55.000 0.00 0.00 0.00 3.86
243 244 0.597637 ACGTCTTTGCACTCGACTGG 60.598 55.000 0.00 0.00 0.00 4.00
244 245 0.778815 GACGTCTTTGCACTCGACTG 59.221 55.000 8.70 0.00 0.00 3.51
245 246 0.669077 AGACGTCTTTGCACTCGACT 59.331 50.000 13.58 0.00 0.00 4.18
246 247 0.778815 CAGACGTCTTTGCACTCGAC 59.221 55.000 17.26 0.00 0.00 4.20
247 248 0.384309 ACAGACGTCTTTGCACTCGA 59.616 50.000 17.26 0.00 0.00 4.04
248 249 0.504384 CACAGACGTCTTTGCACTCG 59.496 55.000 17.26 4.41 0.00 4.18
249 250 0.861837 CCACAGACGTCTTTGCACTC 59.138 55.000 23.32 0.00 0.00 3.51
250 251 0.178068 ACCACAGACGTCTTTGCACT 59.822 50.000 23.32 7.42 0.00 4.40
251 252 0.304705 CACCACAGACGTCTTTGCAC 59.695 55.000 23.32 0.00 0.00 4.57
252 253 0.176910 TCACCACAGACGTCTTTGCA 59.823 50.000 23.32 8.74 0.00 4.08
253 254 0.582005 GTCACCACAGACGTCTTTGC 59.418 55.000 23.32 8.45 0.00 3.68
254 255 2.225068 AGTCACCACAGACGTCTTTG 57.775 50.000 22.09 22.09 43.24 2.77
255 256 2.798499 CGAAGTCACCACAGACGTCTTT 60.798 50.000 17.26 6.93 42.41 2.52
256 257 1.269102 CGAAGTCACCACAGACGTCTT 60.269 52.381 17.26 4.83 42.41 3.01
257 258 0.311165 CGAAGTCACCACAGACGTCT 59.689 55.000 13.58 13.58 42.41 4.18
258 259 0.030369 ACGAAGTCACCACAGACGTC 59.970 55.000 7.70 7.70 43.24 4.34
259 260 2.112898 ACGAAGTCACCACAGACGT 58.887 52.632 0.00 0.00 43.24 4.34
266 267 7.606751 CATCTTGAGATCGACGAAGTCACCA 62.607 48.000 0.00 0.00 45.53 4.17
267 268 5.253802 CATCTTGAGATCGACGAAGTCACC 61.254 50.000 0.00 0.00 45.53 4.02
268 269 3.788694 CATCTTGAGATCGACGAAGTCAC 59.211 47.826 0.00 0.00 45.53 3.67
269 270 3.440522 ACATCTTGAGATCGACGAAGTCA 59.559 43.478 0.00 4.96 45.53 3.41
270 271 4.022464 ACATCTTGAGATCGACGAAGTC 57.978 45.455 0.00 2.02 43.23 3.01
271 272 4.169508 CAACATCTTGAGATCGACGAAGT 58.830 43.478 0.00 0.00 36.31 3.01
272 273 3.000277 GCAACATCTTGAGATCGACGAAG 60.000 47.826 0.00 0.00 31.21 3.79
273 274 2.923655 GCAACATCTTGAGATCGACGAA 59.076 45.455 0.00 0.00 31.21 3.85
274 275 2.530177 GCAACATCTTGAGATCGACGA 58.470 47.619 0.00 0.00 31.21 4.20
275 276 1.253800 CGCAACATCTTGAGATCGACG 59.746 52.381 0.00 0.00 31.21 5.12
276 277 2.263077 ACGCAACATCTTGAGATCGAC 58.737 47.619 6.77 0.00 31.96 4.20
277 278 2.530177 GACGCAACATCTTGAGATCGA 58.470 47.619 6.77 0.00 31.96 3.59
278 279 1.253800 CGACGCAACATCTTGAGATCG 59.746 52.381 0.00 0.00 31.96 3.69
279 280 1.590238 CCGACGCAACATCTTGAGATC 59.410 52.381 0.00 0.00 31.96 2.75
280 281 1.066858 ACCGACGCAACATCTTGAGAT 60.067 47.619 0.00 0.00 31.96 2.75
281 282 0.317160 ACCGACGCAACATCTTGAGA 59.683 50.000 0.00 0.00 31.96 3.27
282 283 1.126846 GAACCGACGCAACATCTTGAG 59.873 52.381 0.00 0.00 33.64 3.02
283 284 1.144969 GAACCGACGCAACATCTTGA 58.855 50.000 0.00 0.00 0.00 3.02
284 285 0.179250 CGAACCGACGCAACATCTTG 60.179 55.000 0.00 0.00 0.00 3.02
285 286 1.289109 CCGAACCGACGCAACATCTT 61.289 55.000 0.00 0.00 0.00 2.40
286 287 1.736645 CCGAACCGACGCAACATCT 60.737 57.895 0.00 0.00 0.00 2.90
287 288 0.733566 TACCGAACCGACGCAACATC 60.734 55.000 0.00 0.00 0.00 3.06
288 289 0.108520 ATACCGAACCGACGCAACAT 60.109 50.000 0.00 0.00 0.00 2.71
289 290 0.733566 GATACCGAACCGACGCAACA 60.734 55.000 0.00 0.00 0.00 3.33
290 291 0.457337 AGATACCGAACCGACGCAAC 60.457 55.000 0.00 0.00 0.00 4.17
291 292 0.179156 GAGATACCGAACCGACGCAA 60.179 55.000 0.00 0.00 0.00 4.85
292 293 1.430632 GAGATACCGAACCGACGCA 59.569 57.895 0.00 0.00 0.00 5.24
293 294 1.653533 CGAGATACCGAACCGACGC 60.654 63.158 0.00 0.00 0.00 5.19
294 295 1.010350 CCGAGATACCGAACCGACG 60.010 63.158 0.00 0.00 0.00 5.12
295 296 0.307146 CTCCGAGATACCGAACCGAC 59.693 60.000 0.00 0.00 0.00 4.79
296 297 0.816825 CCTCCGAGATACCGAACCGA 60.817 60.000 0.00 0.00 0.00 4.69
297 298 1.099879 ACCTCCGAGATACCGAACCG 61.100 60.000 0.00 0.00 0.00 4.44
298 299 0.384669 CACCTCCGAGATACCGAACC 59.615 60.000 0.00 0.00 0.00 3.62
299 300 0.248949 GCACCTCCGAGATACCGAAC 60.249 60.000 0.00 0.00 0.00 3.95
300 301 0.395311 AGCACCTCCGAGATACCGAA 60.395 55.000 0.00 0.00 0.00 4.30
301 302 0.818445 GAGCACCTCCGAGATACCGA 60.818 60.000 0.00 0.00 0.00 4.69
302 303 1.101635 TGAGCACCTCCGAGATACCG 61.102 60.000 0.00 0.00 0.00 4.02
303 304 1.333177 ATGAGCACCTCCGAGATACC 58.667 55.000 0.00 0.00 0.00 2.73
304 305 3.057174 CCTTATGAGCACCTCCGAGATAC 60.057 52.174 0.00 0.00 0.00 2.24
305 306 3.157881 CCTTATGAGCACCTCCGAGATA 58.842 50.000 0.00 0.00 0.00 1.98
306 307 1.967066 CCTTATGAGCACCTCCGAGAT 59.033 52.381 0.00 0.00 0.00 2.75
307 308 1.063942 TCCTTATGAGCACCTCCGAGA 60.064 52.381 0.00 0.00 0.00 4.04
308 309 1.403814 TCCTTATGAGCACCTCCGAG 58.596 55.000 0.00 0.00 0.00 4.63
309 310 2.088104 ATCCTTATGAGCACCTCCGA 57.912 50.000 0.00 0.00 0.00 4.55
310 311 3.157881 TCTATCCTTATGAGCACCTCCG 58.842 50.000 0.00 0.00 0.00 4.63
311 312 4.021544 CACTCTATCCTTATGAGCACCTCC 60.022 50.000 0.00 0.00 0.00 4.30
312 313 4.830046 TCACTCTATCCTTATGAGCACCTC 59.170 45.833 0.00 0.00 0.00 3.85
313 314 4.809193 TCACTCTATCCTTATGAGCACCT 58.191 43.478 0.00 0.00 0.00 4.00
314 315 4.586841 ACTCACTCTATCCTTATGAGCACC 59.413 45.833 0.00 0.00 40.39 5.01
315 316 5.068460 ACACTCACTCTATCCTTATGAGCAC 59.932 44.000 0.00 0.00 40.39 4.40
316 317 5.068329 CACACTCACTCTATCCTTATGAGCA 59.932 44.000 0.00 0.00 40.39 4.26
317 318 5.527951 CACACTCACTCTATCCTTATGAGC 58.472 45.833 0.00 0.00 40.39 4.26
318 319 5.068329 TGCACACTCACTCTATCCTTATGAG 59.932 44.000 0.00 0.00 42.07 2.90
319 320 4.956075 TGCACACTCACTCTATCCTTATGA 59.044 41.667 0.00 0.00 0.00 2.15
320 321 5.046529 GTGCACACTCACTCTATCCTTATG 58.953 45.833 13.17 0.00 34.29 1.90
321 322 4.202060 CGTGCACACTCACTCTATCCTTAT 60.202 45.833 18.64 0.00 34.92 1.73
322 323 3.128764 CGTGCACACTCACTCTATCCTTA 59.871 47.826 18.64 0.00 34.92 2.69
323 324 2.094494 CGTGCACACTCACTCTATCCTT 60.094 50.000 18.64 0.00 34.92 3.36
324 325 1.474478 CGTGCACACTCACTCTATCCT 59.526 52.381 18.64 0.00 34.92 3.24
325 326 1.202582 ACGTGCACACTCACTCTATCC 59.797 52.381 18.64 0.00 34.92 2.59
326 327 2.638556 ACGTGCACACTCACTCTATC 57.361 50.000 18.64 0.00 34.92 2.08
327 328 2.296190 TGAACGTGCACACTCACTCTAT 59.704 45.455 18.64 0.00 34.92 1.98
328 329 1.679153 TGAACGTGCACACTCACTCTA 59.321 47.619 18.64 0.00 34.92 2.43
329 330 0.459899 TGAACGTGCACACTCACTCT 59.540 50.000 18.64 0.00 34.92 3.24
330 331 1.502231 ATGAACGTGCACACTCACTC 58.498 50.000 18.64 3.97 34.92 3.51
331 332 2.812358 TATGAACGTGCACACTCACT 57.188 45.000 18.64 10.41 34.92 3.41
332 333 2.094258 CCATATGAACGTGCACACTCAC 59.906 50.000 18.64 3.76 0.00 3.51
333 334 2.289382 ACCATATGAACGTGCACACTCA 60.289 45.455 18.64 17.96 0.00 3.41
334 335 2.346803 ACCATATGAACGTGCACACTC 58.653 47.619 18.64 12.65 0.00 3.51
335 336 2.472695 ACCATATGAACGTGCACACT 57.527 45.000 18.64 1.90 0.00 3.55
336 337 4.153475 ACTTAACCATATGAACGTGCACAC 59.847 41.667 18.64 8.14 0.00 3.82
337 338 4.153296 CACTTAACCATATGAACGTGCACA 59.847 41.667 18.64 0.00 0.00 4.57
338 339 4.153475 ACACTTAACCATATGAACGTGCAC 59.847 41.667 6.82 6.82 0.00 4.57
339 340 4.320023 ACACTTAACCATATGAACGTGCA 58.680 39.130 0.00 0.00 0.00 4.57
340 341 4.939509 ACACTTAACCATATGAACGTGC 57.060 40.909 3.65 0.00 0.00 5.34
341 342 7.534085 ACATACACTTAACCATATGAACGTG 57.466 36.000 3.65 6.10 0.00 4.49
342 343 7.433131 CGTACATACACTTAACCATATGAACGT 59.567 37.037 3.65 0.00 0.00 3.99
343 344 7.433131 ACGTACATACACTTAACCATATGAACG 59.567 37.037 3.65 0.00 0.00 3.95
344 345 8.537223 CACGTACATACACTTAACCATATGAAC 58.463 37.037 3.65 0.00 0.00 3.18
345 346 8.252417 ACACGTACATACACTTAACCATATGAA 58.748 33.333 3.65 0.00 0.00 2.57
346 347 7.774134 ACACGTACATACACTTAACCATATGA 58.226 34.615 3.65 0.00 0.00 2.15
347 348 7.997107 ACACGTACATACACTTAACCATATG 57.003 36.000 0.00 0.00 0.00 1.78
348 349 9.687210 CATACACGTACATACACTTAACCATAT 57.313 33.333 0.00 0.00 0.00 1.78
349 350 8.685427 ACATACACGTACATACACTTAACCATA 58.315 33.333 0.00 0.00 0.00 2.74
350 351 7.490079 CACATACACGTACATACACTTAACCAT 59.510 37.037 0.00 0.00 0.00 3.55
351 352 6.807720 CACATACACGTACATACACTTAACCA 59.192 38.462 0.00 0.00 0.00 3.67
352 353 7.028962 TCACATACACGTACATACACTTAACC 58.971 38.462 0.00 0.00 0.00 2.85
353 354 8.451687 TTCACATACACGTACATACACTTAAC 57.548 34.615 0.00 0.00 0.00 2.01
356 357 9.459640 GATATTCACATACACGTACATACACTT 57.540 33.333 0.00 0.00 0.00 3.16
357 358 8.847196 AGATATTCACATACACGTACATACACT 58.153 33.333 0.00 0.00 0.00 3.55
366 367 8.942338 ACAAACATAGATATTCACATACACGT 57.058 30.769 0.00 0.00 0.00 4.49
430 431 3.716872 TCTCACTCCCACCTTCTCTTTTT 59.283 43.478 0.00 0.00 0.00 1.94
431 432 3.318313 TCTCACTCCCACCTTCTCTTTT 58.682 45.455 0.00 0.00 0.00 2.27
432 433 2.977808 TCTCACTCCCACCTTCTCTTT 58.022 47.619 0.00 0.00 0.00 2.52
433 434 2.704190 TCTCACTCCCACCTTCTCTT 57.296 50.000 0.00 0.00 0.00 2.85
434 435 2.704190 TTCTCACTCCCACCTTCTCT 57.296 50.000 0.00 0.00 0.00 3.10
435 436 3.558109 CCTTTTCTCACTCCCACCTTCTC 60.558 52.174 0.00 0.00 0.00 2.87
436 437 2.373502 CCTTTTCTCACTCCCACCTTCT 59.626 50.000 0.00 0.00 0.00 2.85
437 438 2.106684 ACCTTTTCTCACTCCCACCTTC 59.893 50.000 0.00 0.00 0.00 3.46
438 439 2.136026 ACCTTTTCTCACTCCCACCTT 58.864 47.619 0.00 0.00 0.00 3.50
439 440 1.821088 ACCTTTTCTCACTCCCACCT 58.179 50.000 0.00 0.00 0.00 4.00
440 441 2.290134 GGTACCTTTTCTCACTCCCACC 60.290 54.545 4.06 0.00 0.00 4.61
441 442 3.055209 GGTACCTTTTCTCACTCCCAC 57.945 52.381 4.06 0.00 0.00 4.61
468 469 4.035102 AGGGGAGCGGCTTTGTCC 62.035 66.667 2.97 0.00 0.00 4.02
469 470 2.747855 CAGGGGAGCGGCTTTGTC 60.748 66.667 2.97 0.00 0.00 3.18
470 471 3.570212 ACAGGGGAGCGGCTTTGT 61.570 61.111 2.97 4.33 0.00 2.83
471 472 3.058160 CACAGGGGAGCGGCTTTG 61.058 66.667 2.97 3.68 0.00 2.77
477 478 4.899239 GATCGGCACAGGGGAGCG 62.899 72.222 0.00 0.00 0.00 5.03
478 479 4.554036 GGATCGGCACAGGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
479 480 3.083349 TGGATCGGCACAGGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
480 481 3.399181 GTGGATCGGCACAGGGGA 61.399 66.667 0.00 0.00 0.00 4.81
481 482 2.762969 TTTGTGGATCGGCACAGGGG 62.763 60.000 5.18 0.00 32.51 4.79
482 483 0.893270 TTTTGTGGATCGGCACAGGG 60.893 55.000 5.18 0.00 32.51 4.45
483 484 1.135315 CATTTTGTGGATCGGCACAGG 60.135 52.381 5.18 0.00 32.51 4.00
484 485 1.811965 TCATTTTGTGGATCGGCACAG 59.188 47.619 5.18 0.00 32.51 3.66
485 486 1.902938 TCATTTTGTGGATCGGCACA 58.097 45.000 1.13 1.13 0.00 4.57
486 487 2.030363 TGTTCATTTTGTGGATCGGCAC 60.030 45.455 0.00 0.00 0.00 5.01
487 488 2.228582 CTGTTCATTTTGTGGATCGGCA 59.771 45.455 0.00 0.00 0.00 5.69
488 489 2.487762 TCTGTTCATTTTGTGGATCGGC 59.512 45.455 0.00 0.00 0.00 5.54
489 490 3.424829 CGTCTGTTCATTTTGTGGATCGG 60.425 47.826 0.00 0.00 0.00 4.18
490 491 3.424829 CCGTCTGTTCATTTTGTGGATCG 60.425 47.826 0.00 0.00 0.00 3.69
515 516 4.927782 GTGTGCTGACCCGCCACA 62.928 66.667 0.00 0.00 33.87 4.17
518 519 2.904866 TTTGTGTGCTGACCCGCC 60.905 61.111 0.00 0.00 0.00 6.13
520 521 1.648720 CAGTTTGTGTGCTGACCCG 59.351 57.895 0.00 0.00 34.87 5.28
586 587 2.433334 CGTGCGCGATCGAGTTTGA 61.433 57.895 21.57 0.00 41.33 2.69
605 606 4.539881 GAGAGAGACGGCGGCGTC 62.540 72.222 45.55 45.55 39.01 5.19
634 635 1.793258 CAGTGCCTCAGTCAAGTCTG 58.207 55.000 0.00 0.00 36.85 3.51
689 697 1.423541 AGTGGTGGTAAATGGTGAGCA 59.576 47.619 0.00 0.00 0.00 4.26
1107 1126 1.592400 CGCAGTGGCATCATCGCTA 60.592 57.895 0.00 0.00 41.24 4.26
1127 1146 1.153667 GACAGCCGGCAGAGAGAAG 60.154 63.158 31.54 9.74 0.00 2.85
1212 1231 1.890894 CTCCACCGACTCCGAACAT 59.109 57.895 0.00 0.00 38.22 2.71
1242 1261 0.965866 AAGGATCCAGCTCGACGTCA 60.966 55.000 15.82 1.87 0.00 4.35
1284 1303 0.539669 TCTCTGAGTCCGACAAGCCA 60.540 55.000 4.32 0.00 0.00 4.75
1299 1318 2.660258 AAAACCGCACCGCTGTCTCT 62.660 55.000 0.00 0.00 0.00 3.10
1400 1419 4.097892 ACTCCGACAACAGAGCAAAATTTT 59.902 37.500 0.00 0.00 33.18 1.82
1467 1486 5.511545 GCCAGACAAAAGGATCCGATATAGT 60.512 44.000 5.98 1.63 0.00 2.12
1623 1642 4.747931 GCCATGCCATAATACTTCTCCACT 60.748 45.833 0.00 0.00 0.00 4.00
1715 1734 4.500716 GCTCCTCTACAAGCTCAATCCTAC 60.501 50.000 0.00 0.00 35.60 3.18
2320 2339 1.321474 TTGCAGAGCCCTTTCAACAG 58.679 50.000 0.00 0.00 0.00 3.16
2990 3009 3.589288 AGTGGCTAAACCTCTCCAAGAAT 59.411 43.478 0.00 0.00 37.78 2.40
3018 3037 2.431683 GTGGCAGAGGCAGGACAA 59.568 61.111 0.00 0.00 43.71 3.18
3070 3089 2.800544 TGCAAAGTGACGAGCTTAGAAC 59.199 45.455 0.00 0.00 0.00 3.01
3135 3155 1.289380 GTGGTCTGGACGTCTGGTC 59.711 63.158 16.46 6.30 45.31 4.02
3153 3173 1.060713 CTACTTTCACGTGTCTGCCG 58.939 55.000 16.51 2.31 0.00 5.69
3244 3317 5.008613 TGAAACAGAGGTTGTAAATGTCTGC 59.991 40.000 0.00 0.00 40.32 4.26
3256 3329 7.759433 CACAACACTTATTTTGAAACAGAGGTT 59.241 33.333 0.00 0.00 39.43 3.50
3257 3330 7.257722 CACAACACTTATTTTGAAACAGAGGT 58.742 34.615 0.00 0.00 0.00 3.85
3262 3335 7.155328 ACAACCACAACACTTATTTTGAAACA 58.845 30.769 0.00 0.00 0.00 2.83
3313 3386 2.163613 CCCTCCGTTCCAAAATAAGTGC 59.836 50.000 0.00 0.00 0.00 4.40
3320 3393 4.076394 CAATTACTCCCTCCGTTCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
3354 3427 5.063204 CAGTCCACTTGTTCAACAGGATTA 58.937 41.667 6.66 0.00 0.00 1.75
3385 3458 5.772393 TGGCTCTCCAGGTCTAAAATAAA 57.228 39.130 0.00 0.00 37.47 1.40
3388 3461 4.870021 ATTGGCTCTCCAGGTCTAAAAT 57.130 40.909 0.00 0.00 44.53 1.82
3396 3469 5.222007 ACAAGGATTATATTGGCTCTCCAGG 60.222 44.000 0.00 0.00 44.53 4.45
3554 3627 7.090808 GGACAAATATGCATGTACGAGAGATA 58.909 38.462 10.16 0.00 0.00 1.98
3618 3691 3.261580 TGTTGTAGATGCATTGGAGACG 58.738 45.455 0.00 0.00 0.00 4.18
3640 3713 5.690865 AGAACTCAGGACCAACATTAAACA 58.309 37.500 0.00 0.00 0.00 2.83
3697 3770 7.977818 TCAGGATTATATTGTATGCTGAAGGT 58.022 34.615 11.37 0.00 43.38 3.50
3729 3802 4.756642 TGAAAAGTAGTGCCAGAAGTCATG 59.243 41.667 0.00 0.00 0.00 3.07
3767 3840 7.926018 GGTGGAAATGTTGTCTTTCACTTTATT 59.074 33.333 0.00 0.00 34.90 1.40
3771 3844 4.709397 TGGTGGAAATGTTGTCTTTCACTT 59.291 37.500 0.00 0.00 34.90 3.16
3781 3854 6.462500 TGATGGTTTTATGGTGGAAATGTTG 58.538 36.000 0.00 0.00 0.00 3.33
3900 3978 9.035890 ACCTAGCTGCTAATAACATATGTGATA 57.964 33.333 9.63 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.