Multiple sequence alignment - TraesCS2D01G095100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G095100 chr2D 100.000 6373 0 0 1 6373 47016837 47010465 0.000000e+00 11769.0
1 TraesCS2D01G095100 chr2D 100.000 29 0 0 6241 6269 624193763 624193735 3.000000e-03 54.7
2 TraesCS2D01G095100 chr2B 95.628 3751 111 15 884 4616 74409397 74405682 0.000000e+00 5969.0
3 TraesCS2D01G095100 chr2B 97.333 1125 15 5 4610 5722 74405639 74404518 0.000000e+00 1897.0
4 TraesCS2D01G095100 chr2B 86.035 802 94 15 1 787 449426822 449427620 0.000000e+00 845.0
5 TraesCS2D01G095100 chr2B 86.458 768 95 9 24 787 388959794 388959032 0.000000e+00 833.0
6 TraesCS2D01G095100 chr2B 94.012 167 9 1 5900 6065 69689503 69689337 1.060000e-62 252.0
7 TraesCS2D01G095100 chr2B 82.712 295 31 6 6086 6373 74335998 74335717 1.770000e-60 244.0
8 TraesCS2D01G095100 chr2B 92.208 77 5 1 5716 5791 74404503 74404427 2.430000e-19 108.0
9 TraesCS2D01G095100 chr2B 93.333 45 2 1 6224 6268 68668742 68668785 1.480000e-06 65.8
10 TraesCS2D01G095100 chr2A 95.237 3149 111 15 884 4011 50169177 50166047 0.000000e+00 4948.0
11 TraesCS2D01G095100 chr2A 93.990 1198 35 18 4610 5791 50165424 50164248 0.000000e+00 1779.0
12 TraesCS2D01G095100 chr2A 96.918 584 13 2 4039 4618 50166048 50165466 0.000000e+00 974.0
13 TraesCS2D01G095100 chr2A 85.427 796 101 15 1 787 133314772 133313983 0.000000e+00 813.0
14 TraesCS2D01G095100 chr2A 85.284 299 34 8 6076 6365 50163555 50163258 3.730000e-77 300.0
15 TraesCS2D01G095100 chr2A 77.273 110 14 6 6241 6349 755559136 755559037 3.000000e-03 54.7
16 TraesCS2D01G095100 chr5D 88.819 796 80 4 1 788 32130662 32131456 0.000000e+00 968.0
17 TraesCS2D01G095100 chr4D 88.446 727 74 9 69 791 384366814 384366094 0.000000e+00 869.0
18 TraesCS2D01G095100 chr7D 86.207 783 89 13 20 788 401869665 401870442 0.000000e+00 830.0
19 TraesCS2D01G095100 chr3D 86.247 778 92 14 21 788 327867529 327866757 0.000000e+00 830.0
20 TraesCS2D01G095100 chr3D 93.452 168 10 1 5898 6064 563962937 563963104 1.370000e-61 248.0
21 TraesCS2D01G095100 chr3D 93.452 168 10 1 5898 6064 569524547 569524714 1.370000e-61 248.0
22 TraesCS2D01G095100 chr3D 81.188 101 13 4 6225 6319 406421603 406421503 6.850000e-10 76.8
23 TraesCS2D01G095100 chr4B 86.154 780 89 12 22 787 147674101 147673327 0.000000e+00 824.0
24 TraesCS2D01G095100 chr6D 85.411 802 93 18 1 787 265739277 265738485 0.000000e+00 811.0
25 TraesCS2D01G095100 chr6D 93.976 166 9 1 5900 6064 471940963 471940798 3.810000e-62 250.0
26 TraesCS2D01G095100 chr6D 92.771 166 11 1 5900 6064 470319989 470319824 8.260000e-59 239.0
27 TraesCS2D01G095100 chr5B 91.713 181 14 1 5891 6070 244611961 244612141 3.810000e-62 250.0
28 TraesCS2D01G095100 chr6B 93.413 167 10 1 5899 6064 690441409 690441243 4.930000e-61 246.0
29 TraesCS2D01G095100 chr1B 93.373 166 10 1 5900 6064 225584775 225584940 1.770000e-60 244.0
30 TraesCS2D01G095100 chr1B 93.373 166 10 1 5900 6064 665241484 665241319 1.770000e-60 244.0
31 TraesCS2D01G095100 chr1B 79.845 129 18 3 6224 6345 412896494 412896621 3.170000e-13 87.9
32 TraesCS2D01G095100 chr3A 81.176 85 7 3 6224 6299 480099546 480099630 6.900000e-05 60.2
33 TraesCS2D01G095100 chrUn 96.875 32 1 0 839 870 111131348 111131379 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G095100 chr2D 47010465 47016837 6372 True 11769.00 11769 100.000000 1 6373 1 chr2D.!!$R1 6372
1 TraesCS2D01G095100 chr2B 74404427 74409397 4970 True 2658.00 5969 95.056333 884 5791 3 chr2B.!!$R4 4907
2 TraesCS2D01G095100 chr2B 449426822 449427620 798 False 845.00 845 86.035000 1 787 1 chr2B.!!$F2 786
3 TraesCS2D01G095100 chr2B 388959032 388959794 762 True 833.00 833 86.458000 24 787 1 chr2B.!!$R3 763
4 TraesCS2D01G095100 chr2A 50163258 50169177 5919 True 2000.25 4948 92.857250 884 6365 4 chr2A.!!$R3 5481
5 TraesCS2D01G095100 chr2A 133313983 133314772 789 True 813.00 813 85.427000 1 787 1 chr2A.!!$R1 786
6 TraesCS2D01G095100 chr5D 32130662 32131456 794 False 968.00 968 88.819000 1 788 1 chr5D.!!$F1 787
7 TraesCS2D01G095100 chr4D 384366094 384366814 720 True 869.00 869 88.446000 69 791 1 chr4D.!!$R1 722
8 TraesCS2D01G095100 chr7D 401869665 401870442 777 False 830.00 830 86.207000 20 788 1 chr7D.!!$F1 768
9 TraesCS2D01G095100 chr3D 327866757 327867529 772 True 830.00 830 86.247000 21 788 1 chr3D.!!$R1 767
10 TraesCS2D01G095100 chr4B 147673327 147674101 774 True 824.00 824 86.154000 22 787 1 chr4B.!!$R1 765
11 TraesCS2D01G095100 chr6D 265738485 265739277 792 True 811.00 811 85.411000 1 787 1 chr6D.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 233 0.033920 CCAAGCAAAGCCTTTGGGAC 59.966 55.0 18.29 2.52 40.94 4.46 F
807 836 0.541392 TGATGGGATGACAACCTCCG 59.459 55.0 1.33 0.00 32.73 4.63 F
808 837 0.541863 GATGGGATGACAACCTCCGT 59.458 55.0 1.33 0.00 32.73 4.69 F
1738 1785 0.033366 GGTTTGGAAATTGCACGCCT 59.967 50.0 0.00 0.00 0.00 5.52 F
2249 2297 0.324943 TGTTGAAGACCTGGGCTAGC 59.675 55.0 0.30 6.04 0.00 3.42 F
3127 3181 2.380064 TTGCCCACTTCCATTCTTGT 57.620 45.0 0.00 0.00 0.00 3.16 F
4352 4409 1.719600 CTGAGGCACAGCTGTTAGTC 58.280 55.0 18.94 13.89 39.86 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1564 1.076339 ATTGGTAACCATGCCCCCG 60.076 57.895 0.00 0.00 31.53 5.73 R
1735 1782 1.133790 CTGCCAGTTTAAGATGCAGGC 59.866 52.381 0.00 1.12 44.29 4.85 R
2591 2645 1.337635 GGCAATTTTCCATCACGGCAA 60.338 47.619 0.00 0.00 33.14 4.52 R
3563 3620 1.409427 GGGTTGAGTCCTGATAGTCCG 59.591 57.143 0.00 0.00 0.00 4.79 R
3598 3655 1.734465 GTCTTGTGGCTAGATGTGCAC 59.266 52.381 10.75 10.75 0.00 4.57 R
5094 5207 2.986306 GCACCACACCATCAGCAGC 61.986 63.158 0.00 0.00 0.00 5.25 R
6152 6770 0.036858 TGTGACCGCCGATTTGATCA 60.037 50.000 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.435372 TGATGGCCACCTATTGAACC 57.565 50.000 8.16 0.00 0.00 3.62
59 60 7.315142 ACAACACTTGAAACTATGCATTATGG 58.685 34.615 3.54 0.00 0.00 2.74
68 69 8.210946 TGAAACTATGCATTATGGCTAACTAGT 58.789 33.333 3.54 0.00 34.04 2.57
215 233 0.033920 CCAAGCAAAGCCTTTGGGAC 59.966 55.000 18.29 2.52 40.94 4.46
222 240 2.286365 AAGCCTTTGGGACGATTTGA 57.714 45.000 0.00 0.00 33.58 2.69
255 273 6.798482 TGCTTTGATTCTGTGCAATAATAGG 58.202 36.000 0.00 0.00 0.00 2.57
276 294 6.356186 AGGAACTTTTACGTCCAGTAGAAT 57.644 37.500 0.00 0.00 32.62 2.40
277 295 6.164176 AGGAACTTTTACGTCCAGTAGAATG 58.836 40.000 0.00 0.00 32.62 2.67
296 315 9.423061 GTAGAATGATTGTTAAAATTTGCTGGT 57.577 29.630 0.00 0.00 0.00 4.00
456 477 9.545105 AGATTCTGTTTTTGATGCATTGTTTTA 57.455 25.926 0.00 0.00 0.00 1.52
491 512 3.847042 ACTATGGATTCTATCGGGGGA 57.153 47.619 0.00 0.00 0.00 4.81
503 524 2.335681 TCGGGGGATATAAGCCATGA 57.664 50.000 0.00 0.00 0.00 3.07
523 544 8.198109 GCCATGAAGAAGTTAGAATACAGTAGA 58.802 37.037 0.00 0.00 0.00 2.59
567 590 5.771469 TGAATGGATTTTGCAACAGTACTG 58.229 37.500 21.44 21.44 0.00 2.74
619 644 8.641498 AACAGATCTCATAAGGTTTTGTTGAT 57.359 30.769 0.00 0.00 28.44 2.57
676 702 6.830912 AGATCACGATGGATGAAGGAATAAA 58.169 36.000 0.00 0.00 0.00 1.40
746 773 2.978156 TTCAAGGACTCCCAAGCAAT 57.022 45.000 0.00 0.00 33.88 3.56
788 817 5.723860 AGGCATTCCCTCTTTCTTCTAAT 57.276 39.130 0.00 0.00 41.21 1.73
791 820 6.067350 GGCATTCCCTCTTTCTTCTAATGAT 58.933 40.000 0.00 0.00 0.00 2.45
792 821 6.016443 GGCATTCCCTCTTTCTTCTAATGATG 60.016 42.308 0.00 0.00 0.00 3.07
793 822 6.016443 GCATTCCCTCTTTCTTCTAATGATGG 60.016 42.308 0.00 0.00 0.00 3.51
794 823 5.636903 TCCCTCTTTCTTCTAATGATGGG 57.363 43.478 0.00 0.00 0.00 4.00
795 824 5.288687 TCCCTCTTTCTTCTAATGATGGGA 58.711 41.667 0.00 0.00 37.65 4.37
796 825 5.913534 TCCCTCTTTCTTCTAATGATGGGAT 59.086 40.000 0.00 0.00 35.38 3.85
797 826 6.002704 CCCTCTTTCTTCTAATGATGGGATG 58.997 44.000 0.00 0.00 33.14 3.51
798 827 6.183361 CCCTCTTTCTTCTAATGATGGGATGA 60.183 42.308 0.00 0.00 33.14 2.92
799 828 6.709846 CCTCTTTCTTCTAATGATGGGATGAC 59.290 42.308 0.00 0.00 0.00 3.06
800 829 7.199167 TCTTTCTTCTAATGATGGGATGACA 57.801 36.000 0.00 0.00 0.00 3.58
801 830 7.632861 TCTTTCTTCTAATGATGGGATGACAA 58.367 34.615 0.00 0.00 0.00 3.18
802 831 7.554118 TCTTTCTTCTAATGATGGGATGACAAC 59.446 37.037 0.00 0.00 0.00 3.32
803 832 5.684704 TCTTCTAATGATGGGATGACAACC 58.315 41.667 0.00 0.00 0.00 3.77
804 833 5.429762 TCTTCTAATGATGGGATGACAACCT 59.570 40.000 1.33 0.00 0.00 3.50
805 834 5.296151 TCTAATGATGGGATGACAACCTC 57.704 43.478 1.33 0.00 0.00 3.85
806 835 3.303351 AATGATGGGATGACAACCTCC 57.697 47.619 1.33 0.00 0.00 4.30
807 836 0.541392 TGATGGGATGACAACCTCCG 59.459 55.000 1.33 0.00 32.73 4.63
808 837 0.541863 GATGGGATGACAACCTCCGT 59.458 55.000 1.33 0.00 32.73 4.69
809 838 1.760613 GATGGGATGACAACCTCCGTA 59.239 52.381 1.33 0.00 32.73 4.02
810 839 1.874129 TGGGATGACAACCTCCGTAT 58.126 50.000 1.33 0.00 32.73 3.06
811 840 2.193127 TGGGATGACAACCTCCGTATT 58.807 47.619 1.33 0.00 32.73 1.89
812 841 2.169769 TGGGATGACAACCTCCGTATTC 59.830 50.000 1.33 0.00 32.73 1.75
813 842 2.470821 GGATGACAACCTCCGTATTCG 58.529 52.381 0.00 0.00 0.00 3.34
814 843 2.159142 GGATGACAACCTCCGTATTCGT 60.159 50.000 0.00 0.00 35.01 3.85
815 844 2.357327 TGACAACCTCCGTATTCGTG 57.643 50.000 0.00 0.00 35.01 4.35
816 845 1.614903 TGACAACCTCCGTATTCGTGT 59.385 47.619 0.00 0.00 35.01 4.49
817 846 2.036217 TGACAACCTCCGTATTCGTGTT 59.964 45.455 0.00 0.00 35.01 3.32
818 847 3.062042 GACAACCTCCGTATTCGTGTTT 58.938 45.455 0.00 0.00 35.01 2.83
819 848 2.803956 ACAACCTCCGTATTCGTGTTTG 59.196 45.455 0.00 0.00 35.01 2.93
820 849 1.435577 ACCTCCGTATTCGTGTTTGC 58.564 50.000 0.00 0.00 35.01 3.68
821 850 1.001633 ACCTCCGTATTCGTGTTTGCT 59.998 47.619 0.00 0.00 35.01 3.91
822 851 2.231964 ACCTCCGTATTCGTGTTTGCTA 59.768 45.455 0.00 0.00 35.01 3.49
823 852 3.255725 CCTCCGTATTCGTGTTTGCTAA 58.744 45.455 0.00 0.00 35.01 3.09
824 853 3.869246 CCTCCGTATTCGTGTTTGCTAAT 59.131 43.478 0.00 0.00 35.01 1.73
825 854 4.331717 CCTCCGTATTCGTGTTTGCTAATT 59.668 41.667 0.00 0.00 35.01 1.40
826 855 5.521010 CCTCCGTATTCGTGTTTGCTAATTA 59.479 40.000 0.00 0.00 35.01 1.40
827 856 6.202188 CCTCCGTATTCGTGTTTGCTAATTAT 59.798 38.462 0.00 0.00 35.01 1.28
828 857 7.254658 CCTCCGTATTCGTGTTTGCTAATTATT 60.255 37.037 0.00 0.00 35.01 1.40
829 858 7.976826 TCCGTATTCGTGTTTGCTAATTATTT 58.023 30.769 0.00 0.00 35.01 1.40
830 859 8.117988 TCCGTATTCGTGTTTGCTAATTATTTC 58.882 33.333 0.00 0.00 35.01 2.17
831 860 8.120465 CCGTATTCGTGTTTGCTAATTATTTCT 58.880 33.333 0.00 0.00 35.01 2.52
832 861 9.485591 CGTATTCGTGTTTGCTAATTATTTCTT 57.514 29.630 0.00 0.00 0.00 2.52
835 864 8.722342 TTCGTGTTTGCTAATTATTTCTTGTC 57.278 30.769 0.00 0.00 0.00 3.18
836 865 8.094798 TCGTGTTTGCTAATTATTTCTTGTCT 57.905 30.769 0.00 0.00 0.00 3.41
837 866 9.210329 TCGTGTTTGCTAATTATTTCTTGTCTA 57.790 29.630 0.00 0.00 0.00 2.59
838 867 9.988350 CGTGTTTGCTAATTATTTCTTGTCTAT 57.012 29.630 0.00 0.00 0.00 1.98
844 873 8.826710 TGCTAATTATTTCTTGTCTATGAACGG 58.173 33.333 0.00 0.00 0.00 4.44
845 874 9.042008 GCTAATTATTTCTTGTCTATGAACGGA 57.958 33.333 0.00 0.00 0.00 4.69
848 877 8.964476 ATTATTTCTTGTCTATGAACGGATGT 57.036 30.769 0.00 0.00 0.00 3.06
849 878 6.668541 ATTTCTTGTCTATGAACGGATGTG 57.331 37.500 0.00 0.00 0.00 3.21
850 879 4.123497 TCTTGTCTATGAACGGATGTGG 57.877 45.455 0.00 0.00 0.00 4.17
851 880 2.979814 TGTCTATGAACGGATGTGGG 57.020 50.000 0.00 0.00 0.00 4.61
852 881 2.462723 TGTCTATGAACGGATGTGGGA 58.537 47.619 0.00 0.00 0.00 4.37
853 882 2.430694 TGTCTATGAACGGATGTGGGAG 59.569 50.000 0.00 0.00 0.00 4.30
854 883 2.693591 GTCTATGAACGGATGTGGGAGA 59.306 50.000 0.00 0.00 0.00 3.71
855 884 3.132289 GTCTATGAACGGATGTGGGAGAA 59.868 47.826 0.00 0.00 0.00 2.87
856 885 3.772572 TCTATGAACGGATGTGGGAGAAA 59.227 43.478 0.00 0.00 0.00 2.52
857 886 2.940994 TGAACGGATGTGGGAGAAAA 57.059 45.000 0.00 0.00 0.00 2.29
858 887 3.433306 TGAACGGATGTGGGAGAAAAT 57.567 42.857 0.00 0.00 0.00 1.82
859 888 3.761897 TGAACGGATGTGGGAGAAAATT 58.238 40.909 0.00 0.00 0.00 1.82
860 889 4.148838 TGAACGGATGTGGGAGAAAATTT 58.851 39.130 0.00 0.00 0.00 1.82
861 890 5.317808 TGAACGGATGTGGGAGAAAATTTA 58.682 37.500 0.00 0.00 0.00 1.40
862 891 5.949354 TGAACGGATGTGGGAGAAAATTTAT 59.051 36.000 0.00 0.00 0.00 1.40
863 892 5.835113 ACGGATGTGGGAGAAAATTTATG 57.165 39.130 0.00 0.00 0.00 1.90
864 893 4.644685 ACGGATGTGGGAGAAAATTTATGG 59.355 41.667 0.00 0.00 0.00 2.74
865 894 4.037923 CGGATGTGGGAGAAAATTTATGGG 59.962 45.833 0.00 0.00 0.00 4.00
866 895 4.962362 GGATGTGGGAGAAAATTTATGGGT 59.038 41.667 0.00 0.00 0.00 4.51
867 896 5.425217 GGATGTGGGAGAAAATTTATGGGTT 59.575 40.000 0.00 0.00 0.00 4.11
868 897 5.736951 TGTGGGAGAAAATTTATGGGTTG 57.263 39.130 0.00 0.00 0.00 3.77
869 898 4.020662 TGTGGGAGAAAATTTATGGGTTGC 60.021 41.667 0.00 0.00 0.00 4.17
870 899 3.194542 TGGGAGAAAATTTATGGGTTGCG 59.805 43.478 0.00 0.00 0.00 4.85
871 900 3.430236 GGGAGAAAATTTATGGGTTGCGG 60.430 47.826 0.00 0.00 0.00 5.69
872 901 3.194755 GGAGAAAATTTATGGGTTGCGGT 59.805 43.478 0.00 0.00 0.00 5.68
873 902 4.322424 GGAGAAAATTTATGGGTTGCGGTT 60.322 41.667 0.00 0.00 0.00 4.44
874 903 5.222079 AGAAAATTTATGGGTTGCGGTTT 57.778 34.783 0.00 0.00 0.00 3.27
875 904 6.347859 AGAAAATTTATGGGTTGCGGTTTA 57.652 33.333 0.00 0.00 0.00 2.01
876 905 6.394809 AGAAAATTTATGGGTTGCGGTTTAG 58.605 36.000 0.00 0.00 0.00 1.85
877 906 5.986501 AAATTTATGGGTTGCGGTTTAGA 57.013 34.783 0.00 0.00 0.00 2.10
878 907 6.538945 AAATTTATGGGTTGCGGTTTAGAT 57.461 33.333 0.00 0.00 0.00 1.98
879 908 4.974368 TTTATGGGTTGCGGTTTAGATG 57.026 40.909 0.00 0.00 0.00 2.90
880 909 1.102978 ATGGGTTGCGGTTTAGATGC 58.897 50.000 0.00 0.00 0.00 3.91
881 910 0.963355 TGGGTTGCGGTTTAGATGCC 60.963 55.000 0.00 0.00 0.00 4.40
882 911 1.663379 GGGTTGCGGTTTAGATGCCC 61.663 60.000 0.00 0.00 0.00 5.36
1456 1498 5.067273 TCACTGTTTCCGATTTGGTACATT 58.933 37.500 0.00 0.00 39.30 2.71
1468 1510 9.104965 CCGATTTGGTACATTTTTCTCTGTATA 57.895 33.333 0.00 0.00 39.30 1.47
1479 1521 4.642445 TTCTCTGTATATGCGTTCCGAA 57.358 40.909 0.00 0.00 0.00 4.30
1491 1533 1.396996 CGTTCCGAATGTGGTGGATTC 59.603 52.381 0.00 0.00 0.00 2.52
1553 1595 1.622607 TACCAATCGGGCCTCACTGG 61.623 60.000 0.84 7.83 42.05 4.00
1554 1596 2.671070 CAATCGGGCCTCACTGGT 59.329 61.111 0.84 0.00 38.35 4.00
1555 1597 1.746615 CAATCGGGCCTCACTGGTG 60.747 63.158 0.84 0.00 38.35 4.17
1556 1598 2.971598 AATCGGGCCTCACTGGTGG 61.972 63.158 0.84 0.00 38.35 4.61
1560 1602 1.903404 GGGCCTCACTGGTGGTTTG 60.903 63.158 0.84 0.00 38.35 2.93
1575 1617 2.415168 TGGTTTGCTGTCGAATCGATTC 59.585 45.455 25.18 25.18 38.42 2.52
1601 1647 7.559335 TCTTGGCATAGATATAGTTGGTGAT 57.441 36.000 0.00 0.00 0.00 3.06
1603 1649 5.491070 TGGCATAGATATAGTTGGTGATGC 58.509 41.667 0.00 0.00 38.14 3.91
1615 1662 4.103785 AGTTGGTGATGCTAGCCATAATCT 59.896 41.667 13.29 0.00 33.29 2.40
1667 1714 5.480422 GTCATTGGTTCTAGGTTTGGGAATT 59.520 40.000 0.00 0.00 0.00 2.17
1669 1716 3.161866 TGGTTCTAGGTTTGGGAATTGC 58.838 45.455 0.00 0.00 0.00 3.56
1733 1780 6.956202 AATTGAAATGGTTTGGAAATTGCA 57.044 29.167 0.00 0.00 0.00 4.08
1735 1782 3.806521 TGAAATGGTTTGGAAATTGCACG 59.193 39.130 0.00 0.00 0.00 5.34
1738 1785 0.033366 GGTTTGGAAATTGCACGCCT 59.967 50.000 0.00 0.00 0.00 5.52
2137 2185 6.687081 TTTAACCTAGTTGGAACTGTTGTG 57.313 37.500 0.00 0.00 40.07 3.33
2249 2297 0.324943 TGTTGAAGACCTGGGCTAGC 59.675 55.000 0.30 6.04 0.00 3.42
2264 2312 3.258372 GGGCTAGCAGTACAGCATATGTA 59.742 47.826 18.24 0.00 43.66 2.29
2270 2318 6.530913 AGCAGTACAGCATATGTAATTTCG 57.469 37.500 13.16 0.00 45.88 3.46
2326 2374 9.454859 TCATTTGTGTATGTTTACCATGTATGA 57.545 29.630 0.00 0.00 34.86 2.15
2343 2391 5.815581 TGTATGACTTAGTTTGAGGGCAAT 58.184 37.500 0.00 0.00 33.25 3.56
2356 2404 2.504175 GAGGGCAATGTCCTAACCTGTA 59.496 50.000 6.30 0.00 38.01 2.74
2395 2443 5.967674 GGTGAAAAGAGCACATATGATTTCG 59.032 40.000 10.38 0.00 37.99 3.46
2405 2453 5.391950 GCACATATGATTTCGTCACTTTGGT 60.392 40.000 10.38 0.00 40.28 3.67
2425 2473 5.606505 TGGTATGGCTTTTGGAAAGAAAAC 58.393 37.500 4.69 0.00 0.00 2.43
2443 2491 6.812998 AGAAAACCATGATAAGGATGCATTG 58.187 36.000 0.00 0.00 0.00 2.82
2799 2853 6.016213 TCCATCCATTCATTTATTGATGCG 57.984 37.500 0.00 0.00 33.34 4.73
2827 2881 8.360390 GGAAACTATTATCCTAAATGCCCAAAG 58.640 37.037 0.00 0.00 32.75 2.77
2847 2901 6.017109 CCAAAGTCAATTGTAGTGCTAGTGTT 60.017 38.462 5.13 0.00 0.00 3.32
3010 3064 3.305950 GGCATTTGCATGTTCACACCTAA 60.306 43.478 4.74 0.00 44.36 2.69
3127 3181 2.380064 TTGCCCACTTCCATTCTTGT 57.620 45.000 0.00 0.00 0.00 3.16
3142 3196 6.032094 CCATTCTTGTGTATGTTCAATCTGC 58.968 40.000 0.00 0.00 0.00 4.26
3150 3204 4.826733 TGTATGTTCAATCTGCAACTTGGT 59.173 37.500 7.77 0.00 0.00 3.67
3563 3620 6.211785 CCCCAAAGGACTATATAGGAGAACTC 59.788 46.154 14.25 1.50 38.24 3.01
3565 3622 6.071840 CCAAAGGACTATATAGGAGAACTCGG 60.072 46.154 14.25 1.73 0.00 4.63
3598 3655 6.483640 GGACTCAACCCTATTTAAGCATACAG 59.516 42.308 0.00 0.00 0.00 2.74
3630 3687 5.852282 AGCCACAAGACAAACACTATTTT 57.148 34.783 0.00 0.00 0.00 1.82
3799 3856 2.069273 CAAGGACAAGTTAGAGTGCGG 58.931 52.381 0.00 0.00 0.00 5.69
3875 3932 2.111384 AGTCACCAAGCCAGATATCGT 58.889 47.619 0.00 0.00 0.00 3.73
4022 4079 5.829924 AGTTTAGCCAAGTGATCATATTGGG 59.170 40.000 29.49 18.34 43.06 4.12
4352 4409 1.719600 CTGAGGCACAGCTGTTAGTC 58.280 55.000 18.94 13.89 39.86 2.59
4567 4628 4.772624 TCATCAGACTGGGTGGCTATATAC 59.227 45.833 1.81 0.00 28.96 1.47
5463 5582 2.524569 AACCAGCATTCAAAAACCCG 57.475 45.000 0.00 0.00 0.00 5.28
5538 5659 0.951558 CCCCTTGTGTTGTGCTGTAC 59.048 55.000 0.00 0.00 0.00 2.90
5568 5689 4.614535 CGGAAAATTGCTTCAGACTTCTGG 60.615 45.833 6.40 0.00 43.91 3.86
5591 5712 3.978460 TGCGAATTAGCAGCGGATA 57.022 47.368 9.35 0.00 42.92 2.59
5603 5724 1.883084 GCGGATACTGGTGGCGAAG 60.883 63.158 0.00 0.00 0.00 3.79
5745 5891 1.871418 TGCTCAGGCAGAAGTAGGAT 58.129 50.000 0.00 0.00 44.28 3.24
5778 5924 2.033194 GGGCGGCAGTACTGTTGTC 61.033 63.158 23.44 16.83 0.00 3.18
5785 5931 3.003480 GGCAGTACTGTTGTCATCCTTC 58.997 50.000 23.44 2.73 0.00 3.46
5786 5932 3.307059 GGCAGTACTGTTGTCATCCTTCT 60.307 47.826 23.44 0.00 0.00 2.85
5787 5933 4.319177 GCAGTACTGTTGTCATCCTTCTT 58.681 43.478 23.44 0.00 0.00 2.52
5788 5934 4.153117 GCAGTACTGTTGTCATCCTTCTTG 59.847 45.833 23.44 0.00 0.00 3.02
5789 5935 5.300752 CAGTACTGTTGTCATCCTTCTTGT 58.699 41.667 15.06 0.00 0.00 3.16
5790 5936 5.760253 CAGTACTGTTGTCATCCTTCTTGTT 59.240 40.000 15.06 0.00 0.00 2.83
5791 5937 5.760253 AGTACTGTTGTCATCCTTCTTGTTG 59.240 40.000 0.00 0.00 0.00 3.33
5792 5938 4.526970 ACTGTTGTCATCCTTCTTGTTGT 58.473 39.130 0.00 0.00 0.00 3.32
5793 5939 4.949856 ACTGTTGTCATCCTTCTTGTTGTT 59.050 37.500 0.00 0.00 0.00 2.83
5794 5940 5.163622 ACTGTTGTCATCCTTCTTGTTGTTG 60.164 40.000 0.00 0.00 0.00 3.33
5795 5941 4.704540 TGTTGTCATCCTTCTTGTTGTTGT 59.295 37.500 0.00 0.00 0.00 3.32
5796 5942 5.184864 TGTTGTCATCCTTCTTGTTGTTGTT 59.815 36.000 0.00 0.00 0.00 2.83
5797 5943 5.247507 TGTCATCCTTCTTGTTGTTGTTG 57.752 39.130 0.00 0.00 0.00 3.33
5798 5944 4.704540 TGTCATCCTTCTTGTTGTTGTTGT 59.295 37.500 0.00 0.00 0.00 3.32
5799 5945 5.184864 TGTCATCCTTCTTGTTGTTGTTGTT 59.815 36.000 0.00 0.00 0.00 2.83
5800 5946 5.516339 GTCATCCTTCTTGTTGTTGTTGTTG 59.484 40.000 0.00 0.00 0.00 3.33
5801 5947 5.184864 TCATCCTTCTTGTTGTTGTTGTTGT 59.815 36.000 0.00 0.00 0.00 3.32
5802 5948 5.461032 TCCTTCTTGTTGTTGTTGTTGTT 57.539 34.783 0.00 0.00 0.00 2.83
5803 5949 5.226396 TCCTTCTTGTTGTTGTTGTTGTTG 58.774 37.500 0.00 0.00 0.00 3.33
5804 5950 4.987912 CCTTCTTGTTGTTGTTGTTGTTGT 59.012 37.500 0.00 0.00 0.00 3.32
5805 5951 5.465056 CCTTCTTGTTGTTGTTGTTGTTGTT 59.535 36.000 0.00 0.00 0.00 2.83
5806 5952 5.896922 TCTTGTTGTTGTTGTTGTTGTTG 57.103 34.783 0.00 0.00 0.00 3.33
5807 5953 5.352284 TCTTGTTGTTGTTGTTGTTGTTGT 58.648 33.333 0.00 0.00 0.00 3.32
5808 5954 5.812642 TCTTGTTGTTGTTGTTGTTGTTGTT 59.187 32.000 0.00 0.00 0.00 2.83
5809 5955 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5810 5956 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5811 5957 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5812 5958 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5813 5959 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5814 5960 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5815 5961 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5816 5962 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5817 5963 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5818 5964 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5819 5965 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5820 5966 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5821 5967 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5822 5968 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5823 5969 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5824 5970 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5825 5971 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5826 5972 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5827 5973 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5828 5974 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5829 5975 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5830 5976 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5831 5977 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5832 5978 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5833 5979 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5834 5980 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5835 5981 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5836 5982 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5837 5983 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5838 5984 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5839 5985 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5840 5986 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5841 5987 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5842 5988 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5843 5989 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5844 5990 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5845 5991 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5846 5992 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5847 5993 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5848 5994 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5849 5995 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5879 6026 4.538490 AGGGATTGTTGTATCCTTGGTGTA 59.462 41.667 0.00 0.00 43.08 2.90
5891 6038 3.005554 CCTTGGTGTAGCATGAAGACTG 58.994 50.000 0.00 0.00 0.00 3.51
5892 6039 2.099141 TGGTGTAGCATGAAGACTGC 57.901 50.000 0.00 0.00 39.97 4.40
5898 6045 3.491208 GCATGAAGACTGCTGGGAT 57.509 52.632 0.00 0.00 36.68 3.85
5899 6046 1.307097 GCATGAAGACTGCTGGGATC 58.693 55.000 0.00 0.00 36.68 3.36
5901 6048 2.562635 CATGAAGACTGCTGGGATCAG 58.437 52.381 0.00 0.00 43.64 2.90
5902 6049 0.907486 TGAAGACTGCTGGGATCAGG 59.093 55.000 0.00 0.00 41.19 3.86
5903 6050 0.179936 GAAGACTGCTGGGATCAGGG 59.820 60.000 0.00 0.00 41.19 4.45
5905 6052 3.412624 GACTGCTGGGATCAGGGGC 62.413 68.421 0.00 0.00 41.19 5.80
5906 6053 4.201122 CTGCTGGGATCAGGGGCC 62.201 72.222 0.00 0.00 41.19 5.80
5913 6060 4.671569 GATCAGGGGCCGCGCTAG 62.672 72.222 15.00 6.23 0.00 3.42
5922 6069 3.456317 CCGCGCTAGGGGTATTCT 58.544 61.111 5.56 0.00 44.60 2.40
5924 6071 0.600255 CCGCGCTAGGGGTATTCTTG 60.600 60.000 5.56 0.00 44.60 3.02
5925 6072 0.600255 CGCGCTAGGGGTATTCTTGG 60.600 60.000 5.56 0.00 0.00 3.61
5926 6073 0.250338 GCGCTAGGGGTATTCTTGGG 60.250 60.000 9.09 0.00 0.00 4.12
5927 6074 1.129058 CGCTAGGGGTATTCTTGGGT 58.871 55.000 0.00 0.00 0.00 4.51
5928 6075 1.070289 CGCTAGGGGTATTCTTGGGTC 59.930 57.143 0.00 0.00 0.00 4.46
5929 6076 2.409570 GCTAGGGGTATTCTTGGGTCT 58.590 52.381 0.00 0.00 0.00 3.85
5931 6078 3.181453 GCTAGGGGTATTCTTGGGTCTTC 60.181 52.174 0.00 0.00 0.00 2.87
5932 6079 2.929301 AGGGGTATTCTTGGGTCTTCA 58.071 47.619 0.00 0.00 0.00 3.02
5934 6081 3.203040 AGGGGTATTCTTGGGTCTTCATG 59.797 47.826 0.00 0.00 0.00 3.07
5935 6082 3.053619 GGGGTATTCTTGGGTCTTCATGT 60.054 47.826 0.00 0.00 0.00 3.21
5936 6083 3.947834 GGGTATTCTTGGGTCTTCATGTG 59.052 47.826 0.00 0.00 0.00 3.21
5938 6085 5.253330 GGTATTCTTGGGTCTTCATGTGAA 58.747 41.667 0.00 0.00 0.00 3.18
5940 6087 7.054124 GGTATTCTTGGGTCTTCATGTGAATA 58.946 38.462 0.00 0.00 33.01 1.75
5941 6088 7.012421 GGTATTCTTGGGTCTTCATGTGAATAC 59.988 40.741 0.00 0.00 41.52 1.89
5942 6089 4.843728 TCTTGGGTCTTCATGTGAATACC 58.156 43.478 17.36 17.36 45.31 2.73
5949 6096 7.823745 GGTCTTCATGTGAATACCCATATTT 57.176 36.000 15.62 0.00 42.26 1.40
5950 6097 8.237811 GGTCTTCATGTGAATACCCATATTTT 57.762 34.615 15.62 0.00 42.26 1.82
5951 6098 8.695456 GGTCTTCATGTGAATACCCATATTTTT 58.305 33.333 15.62 0.00 42.26 1.94
5965 6112 8.655651 ACCCATATTTTTACAAAACAGTGTTG 57.344 30.769 9.79 1.46 32.75 3.33
5966 6113 8.478877 ACCCATATTTTTACAAAACAGTGTTGA 58.521 29.630 9.79 0.00 32.75 3.18
5967 6114 9.487790 CCCATATTTTTACAAAACAGTGTTGAT 57.512 29.630 9.79 0.00 32.75 2.57
5975 6122 4.999950 ACAAAACAGTGTTGATTTTGGCAA 59.000 33.333 17.94 0.00 44.12 4.52
5976 6123 5.471456 ACAAAACAGTGTTGATTTTGGCAAA 59.529 32.000 17.94 8.93 44.12 3.68
5977 6124 6.016777 ACAAAACAGTGTTGATTTTGGCAAAA 60.017 30.769 25.94 25.94 44.12 2.44
5978 6125 5.544136 AACAGTGTTGATTTTGGCAAAAC 57.456 34.783 26.23 19.26 34.43 2.43
5981 6128 5.647225 ACAGTGTTGATTTTGGCAAAACAAT 59.353 32.000 26.23 16.93 36.22 2.71
5982 6129 5.966503 CAGTGTTGATTTTGGCAAAACAATG 59.033 36.000 26.23 23.24 39.48 2.82
5984 6131 6.543100 AGTGTTGATTTTGGCAAAACAATGAT 59.457 30.769 26.23 10.55 36.22 2.45
5988 6135 9.896263 GTTGATTTTGGCAAAACAATGATAATT 57.104 25.926 26.23 7.62 32.37 1.40
5992 6139 9.609950 ATTTTGGCAAAACAATGATAATTTTCG 57.390 25.926 26.23 0.00 32.37 3.46
5993 6140 7.953158 TTGGCAAAACAATGATAATTTTCGA 57.047 28.000 0.00 0.00 0.00 3.71
5994 6141 7.953158 TGGCAAAACAATGATAATTTTCGAA 57.047 28.000 0.00 0.00 0.00 3.71
5995 6142 8.370493 TGGCAAAACAATGATAATTTTCGAAA 57.630 26.923 6.47 6.47 0.00 3.46
6012 6159 8.886816 TTTTCGAAAAACAACAATGATTTTGG 57.113 26.923 20.56 1.95 40.36 3.28
6013 6160 7.602517 TTCGAAAAACAACAATGATTTTGGT 57.397 28.000 0.00 0.00 40.36 3.67
6014 6161 8.703604 TTCGAAAAACAACAATGATTTTGGTA 57.296 26.923 0.00 0.00 40.36 3.25
6015 6162 8.703604 TCGAAAAACAACAATGATTTTGGTAA 57.296 26.923 2.20 0.00 40.36 2.85
6016 6163 9.151471 TCGAAAAACAACAATGATTTTGGTAAA 57.849 25.926 2.20 0.00 40.36 2.01
6036 6183 8.908903 TGGTAAAATGAATACACATGAATACCC 58.091 33.333 0.00 0.00 35.32 3.69
6037 6184 8.073768 GGTAAAATGAATACACATGAATACCCG 58.926 37.037 0.00 0.00 33.03 5.28
6038 6185 6.633500 AAATGAATACACATGAATACCCGG 57.367 37.500 0.00 0.00 0.00 5.73
6040 6187 5.105567 TGAATACACATGAATACCCGGTT 57.894 39.130 0.00 0.00 0.00 4.44
6041 6188 6.236558 TGAATACACATGAATACCCGGTTA 57.763 37.500 0.00 0.00 0.00 2.85
6042 6189 6.050432 TGAATACACATGAATACCCGGTTAC 58.950 40.000 0.00 0.00 0.00 2.50
6043 6190 3.985019 ACACATGAATACCCGGTTACA 57.015 42.857 0.00 0.00 0.00 2.41
6044 6191 4.289238 ACACATGAATACCCGGTTACAA 57.711 40.909 0.00 0.00 0.00 2.41
6046 6193 5.258051 ACACATGAATACCCGGTTACAAAT 58.742 37.500 0.00 0.00 0.00 2.32
6047 6194 5.712917 ACACATGAATACCCGGTTACAAATT 59.287 36.000 0.00 0.00 0.00 1.82
6048 6195 6.209788 ACACATGAATACCCGGTTACAAATTT 59.790 34.615 0.00 0.00 0.00 1.82
6049 6196 6.750039 CACATGAATACCCGGTTACAAATTTC 59.250 38.462 0.00 0.00 0.00 2.17
6050 6197 6.661805 ACATGAATACCCGGTTACAAATTTCT 59.338 34.615 0.00 0.00 0.00 2.52
6051 6198 6.503589 TGAATACCCGGTTACAAATTTCTG 57.496 37.500 0.00 0.00 0.00 3.02
6052 6199 5.416326 TGAATACCCGGTTACAAATTTCTGG 59.584 40.000 0.00 0.00 0.00 3.86
6053 6200 3.512219 ACCCGGTTACAAATTTCTGGA 57.488 42.857 0.00 0.00 0.00 3.86
6054 6201 3.834938 ACCCGGTTACAAATTTCTGGAA 58.165 40.909 0.00 0.00 0.00 3.53
6055 6202 3.570975 ACCCGGTTACAAATTTCTGGAAC 59.429 43.478 0.00 1.07 39.13 3.62
6061 6208 1.339929 ACAAATTTCTGGAACCGCCAC 59.660 47.619 0.00 0.00 43.33 5.01
6062 6209 1.613437 CAAATTTCTGGAACCGCCACT 59.387 47.619 0.00 0.00 43.33 4.00
6063 6210 1.247567 AATTTCTGGAACCGCCACTG 58.752 50.000 0.00 0.00 43.33 3.66
6064 6211 0.609131 ATTTCTGGAACCGCCACTGG 60.609 55.000 0.00 0.00 43.33 4.00
6075 6222 3.148084 CCACTGGTTGGGACGAGT 58.852 61.111 0.00 0.00 44.41 4.18
6076 6223 2.358039 CCACTGGTTGGGACGAGTA 58.642 57.895 0.00 0.00 42.09 2.59
6077 6224 0.246635 CCACTGGTTGGGACGAGTAG 59.753 60.000 0.00 0.00 42.09 2.57
6078 6225 1.254026 CACTGGTTGGGACGAGTAGA 58.746 55.000 0.00 0.00 42.09 2.59
6079 6226 1.067776 CACTGGTTGGGACGAGTAGAC 60.068 57.143 0.00 0.00 42.09 2.59
6081 6228 1.202582 CTGGTTGGGACGAGTAGACAG 59.797 57.143 0.00 0.00 0.00 3.51
6082 6229 0.108756 GGTTGGGACGAGTAGACAGC 60.109 60.000 0.00 0.00 0.00 4.40
6084 6231 1.272769 GTTGGGACGAGTAGACAGCTT 59.727 52.381 0.00 0.00 0.00 3.74
6085 6232 2.490903 GTTGGGACGAGTAGACAGCTTA 59.509 50.000 0.00 0.00 0.00 3.09
6086 6233 2.799017 TGGGACGAGTAGACAGCTTAA 58.201 47.619 0.00 0.00 0.00 1.85
6145 6763 6.366340 TGGAACACCTTACTTTCCATTTACA 58.634 36.000 0.00 0.00 43.13 2.41
6150 6768 5.773176 CACCTTACTTTCCATTTACAAGGGT 59.227 40.000 0.00 0.00 36.26 4.34
6152 6770 6.183361 ACCTTACTTTCCATTTACAAGGGTCT 60.183 38.462 0.00 0.00 36.26 3.85
6156 6774 5.946377 ACTTTCCATTTACAAGGGTCTGATC 59.054 40.000 0.00 0.00 33.15 2.92
6164 6782 1.672881 CAAGGGTCTGATCAAATCGGC 59.327 52.381 0.00 0.00 35.60 5.54
6168 6786 0.931005 GTCTGATCAAATCGGCGGTC 59.069 55.000 7.21 0.00 35.60 4.79
6211 6829 2.158986 AGGAGATCTGCATGCTGTACAC 60.159 50.000 20.33 13.90 0.00 2.90
6219 6837 0.796312 CATGCTGTACACGTTGACCC 59.204 55.000 0.00 0.00 0.00 4.46
6222 6840 0.949105 GCTGTACACGTTGACCCTGG 60.949 60.000 0.00 0.00 0.00 4.45
6231 6849 3.628487 CACGTTGACCCTGGTTTTTCTAA 59.372 43.478 0.00 0.00 0.00 2.10
6243 6861 4.166523 GGTTTTTCTAAAAGCCGCATCTC 58.833 43.478 5.47 0.00 39.04 2.75
6249 6867 7.391148 TTTCTAAAAGCCGCATCTCTTATTT 57.609 32.000 0.00 0.00 0.00 1.40
6253 6871 8.559536 TCTAAAAGCCGCATCTCTTATTTATTG 58.440 33.333 0.00 0.00 0.00 1.90
6257 6875 3.191371 CCGCATCTCTTATTTATTGGGGC 59.809 47.826 0.00 0.00 31.68 5.80
6259 6877 4.520492 CGCATCTCTTATTTATTGGGGCTT 59.480 41.667 0.00 0.00 0.00 4.35
6262 6880 6.942576 GCATCTCTTATTTATTGGGGCTTCTA 59.057 38.462 0.00 0.00 0.00 2.10
6308 6932 4.988540 GTCTCAACAAATTTAAGGGGCAAC 59.011 41.667 0.00 0.00 0.00 4.17
6316 6941 8.615878 ACAAATTTAAGGGGCAACTTATTTTC 57.384 30.769 0.00 0.00 33.31 2.29
6325 6950 5.497474 GGGCAACTTATTTTCTACCTGAGA 58.503 41.667 0.00 0.00 0.00 3.27
6361 6987 1.225855 TTAGGCAAACGCTCAGTGTG 58.774 50.000 0.00 0.00 41.07 3.82
6365 6991 0.654472 GCAAACGCTCAGTGTGAACG 60.654 55.000 0.00 0.00 40.58 3.95
6366 6992 0.042188 CAAACGCTCAGTGTGAACGG 60.042 55.000 0.00 0.00 39.97 4.44
6367 6993 1.157870 AAACGCTCAGTGTGAACGGG 61.158 55.000 0.00 0.00 39.97 5.28
6368 6994 3.414700 CGCTCAGTGTGAACGGGC 61.415 66.667 0.00 0.00 32.85 6.13
6369 6995 3.414700 GCTCAGTGTGAACGGGCG 61.415 66.667 0.00 0.00 0.00 6.13
6370 6996 2.738521 CTCAGTGTGAACGGGCGG 60.739 66.667 0.00 0.00 0.00 6.13
6371 6997 3.515316 CTCAGTGTGAACGGGCGGT 62.515 63.158 0.00 0.00 0.00 5.68
6372 6998 2.590575 CAGTGTGAACGGGCGGTT 60.591 61.111 10.44 10.44 42.96 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.474025 AGTGTTGTCATCTTTATTTTTGGTTCA 58.526 29.630 0.00 0.00 0.00 3.18
59 60 4.996062 TTGTTTTACGCCACTAGTTAGC 57.004 40.909 0.00 0.00 0.00 3.09
68 69 3.980136 GCGCTATTGTTTTACGCCA 57.020 47.368 0.00 0.00 43.58 5.69
152 170 9.944376 ACACTAAGACACAATCATAACAGTATT 57.056 29.630 0.00 0.00 0.00 1.89
153 171 9.944376 AACACTAAGACACAATCATAACAGTAT 57.056 29.630 0.00 0.00 0.00 2.12
215 233 6.169419 TCAAAGCAACTATCACTCAAATCG 57.831 37.500 0.00 0.00 0.00 3.34
222 240 5.106396 GCACAGAATCAAAGCAACTATCACT 60.106 40.000 0.00 0.00 0.00 3.41
255 273 7.829378 ATCATTCTACTGGACGTAAAAGTTC 57.171 36.000 2.96 0.00 0.00 3.01
276 294 5.921004 GCACCAGCAAATTTTAACAATCA 57.079 34.783 0.00 0.00 41.58 2.57
386 407 7.056006 TGTAGCAATCAGAACATTGACCATAT 58.944 34.615 0.00 0.00 36.03 1.78
428 449 5.407387 ACAATGCATCAAAAACAGAATCTGC 59.593 36.000 10.62 0.00 34.37 4.26
551 574 8.629158 TCATTACTTTCAGTACTGTTGCAAAAT 58.371 29.630 21.99 12.71 34.27 1.82
552 575 7.990917 TCATTACTTTCAGTACTGTTGCAAAA 58.009 30.769 21.99 13.37 34.27 2.44
634 660 7.040478 TCGTGATCTCATCCAAAACTTGAAAAT 60.040 33.333 0.00 0.00 0.00 1.82
649 675 3.899980 TCCTTCATCCATCGTGATCTCAT 59.100 43.478 0.00 0.00 0.00 2.90
702 728 3.612247 CTTGGGGTGACTCGGGCAG 62.612 68.421 0.00 0.00 0.00 4.85
711 737 4.791334 TCCTTGAATATTACCTTGGGGTGA 59.209 41.667 0.00 0.00 46.75 4.02
772 801 5.288687 TCCCATCATTAGAAGAAAGAGGGA 58.711 41.667 0.00 0.00 39.16 4.20
788 817 0.541392 CGGAGGTTGTCATCCCATCA 59.459 55.000 0.00 0.00 40.95 3.07
791 820 1.874129 ATACGGAGGTTGTCATCCCA 58.126 50.000 0.00 0.00 40.95 4.37
792 821 2.802057 CGAATACGGAGGTTGTCATCCC 60.802 54.545 0.00 0.00 40.95 3.85
793 822 2.159142 ACGAATACGGAGGTTGTCATCC 60.159 50.000 0.00 0.00 44.46 3.51
794 823 2.858344 CACGAATACGGAGGTTGTCATC 59.142 50.000 0.00 0.00 44.46 2.92
795 824 2.232941 ACACGAATACGGAGGTTGTCAT 59.767 45.455 0.00 0.00 44.46 3.06
796 825 1.614903 ACACGAATACGGAGGTTGTCA 59.385 47.619 0.00 0.00 44.46 3.58
797 826 2.358939 ACACGAATACGGAGGTTGTC 57.641 50.000 0.00 0.00 44.46 3.18
798 827 2.803956 CAAACACGAATACGGAGGTTGT 59.196 45.455 0.00 0.00 44.46 3.32
799 828 2.412325 GCAAACACGAATACGGAGGTTG 60.412 50.000 0.00 0.00 43.58 3.77
800 829 1.802365 GCAAACACGAATACGGAGGTT 59.198 47.619 0.00 0.00 44.46 3.50
801 830 1.001633 AGCAAACACGAATACGGAGGT 59.998 47.619 0.00 0.00 44.46 3.85
802 831 1.722011 AGCAAACACGAATACGGAGG 58.278 50.000 0.00 0.00 44.46 4.30
803 832 5.464965 AATTAGCAAACACGAATACGGAG 57.535 39.130 0.00 0.00 44.46 4.63
804 833 7.542534 AATAATTAGCAAACACGAATACGGA 57.457 32.000 0.00 0.00 44.46 4.69
805 834 8.120465 AGAAATAATTAGCAAACACGAATACGG 58.880 33.333 0.00 0.00 44.46 4.02
806 835 9.485591 AAGAAATAATTAGCAAACACGAATACG 57.514 29.630 0.00 0.00 45.75 3.06
809 838 9.341899 GACAAGAAATAATTAGCAAACACGAAT 57.658 29.630 0.00 0.00 0.00 3.34
810 839 8.564574 AGACAAGAAATAATTAGCAAACACGAA 58.435 29.630 0.00 0.00 0.00 3.85
811 840 8.094798 AGACAAGAAATAATTAGCAAACACGA 57.905 30.769 0.00 0.00 0.00 4.35
812 841 9.988350 ATAGACAAGAAATAATTAGCAAACACG 57.012 29.630 0.00 0.00 0.00 4.49
818 847 8.826710 CCGTTCATAGACAAGAAATAATTAGCA 58.173 33.333 0.00 0.00 0.00 3.49
819 848 9.042008 TCCGTTCATAGACAAGAAATAATTAGC 57.958 33.333 0.00 0.00 0.00 3.09
822 851 9.396022 ACATCCGTTCATAGACAAGAAATAATT 57.604 29.630 0.00 0.00 0.00 1.40
823 852 8.830580 CACATCCGTTCATAGACAAGAAATAAT 58.169 33.333 0.00 0.00 0.00 1.28
824 853 7.279981 CCACATCCGTTCATAGACAAGAAATAA 59.720 37.037 0.00 0.00 0.00 1.40
825 854 6.761242 CCACATCCGTTCATAGACAAGAAATA 59.239 38.462 0.00 0.00 0.00 1.40
826 855 5.586243 CCACATCCGTTCATAGACAAGAAAT 59.414 40.000 0.00 0.00 0.00 2.17
827 856 4.935205 CCACATCCGTTCATAGACAAGAAA 59.065 41.667 0.00 0.00 0.00 2.52
828 857 4.503910 CCACATCCGTTCATAGACAAGAA 58.496 43.478 0.00 0.00 0.00 2.52
829 858 3.118775 CCCACATCCGTTCATAGACAAGA 60.119 47.826 0.00 0.00 0.00 3.02
830 859 3.118775 TCCCACATCCGTTCATAGACAAG 60.119 47.826 0.00 0.00 0.00 3.16
831 860 2.835156 TCCCACATCCGTTCATAGACAA 59.165 45.455 0.00 0.00 0.00 3.18
832 861 2.430694 CTCCCACATCCGTTCATAGACA 59.569 50.000 0.00 0.00 0.00 3.41
833 862 2.693591 TCTCCCACATCCGTTCATAGAC 59.306 50.000 0.00 0.00 0.00 2.59
834 863 3.026707 TCTCCCACATCCGTTCATAGA 57.973 47.619 0.00 0.00 0.00 1.98
835 864 3.819564 TTCTCCCACATCCGTTCATAG 57.180 47.619 0.00 0.00 0.00 2.23
836 865 4.561500 TTTTCTCCCACATCCGTTCATA 57.438 40.909 0.00 0.00 0.00 2.15
837 866 3.433306 TTTTCTCCCACATCCGTTCAT 57.567 42.857 0.00 0.00 0.00 2.57
838 867 2.940994 TTTTCTCCCACATCCGTTCA 57.059 45.000 0.00 0.00 0.00 3.18
839 868 4.783764 AAATTTTCTCCCACATCCGTTC 57.216 40.909 0.00 0.00 0.00 3.95
840 869 5.127031 CCATAAATTTTCTCCCACATCCGTT 59.873 40.000 0.00 0.00 0.00 4.44
841 870 4.644685 CCATAAATTTTCTCCCACATCCGT 59.355 41.667 0.00 0.00 0.00 4.69
842 871 4.037923 CCCATAAATTTTCTCCCACATCCG 59.962 45.833 0.00 0.00 0.00 4.18
843 872 4.962362 ACCCATAAATTTTCTCCCACATCC 59.038 41.667 0.00 0.00 0.00 3.51
844 873 6.340522 CAACCCATAAATTTTCTCCCACATC 58.659 40.000 0.00 0.00 0.00 3.06
845 874 5.338300 GCAACCCATAAATTTTCTCCCACAT 60.338 40.000 0.00 0.00 0.00 3.21
846 875 4.020662 GCAACCCATAAATTTTCTCCCACA 60.021 41.667 0.00 0.00 0.00 4.17
847 876 4.503910 GCAACCCATAAATTTTCTCCCAC 58.496 43.478 0.00 0.00 0.00 4.61
848 877 3.194542 CGCAACCCATAAATTTTCTCCCA 59.805 43.478 0.00 0.00 0.00 4.37
849 878 3.430236 CCGCAACCCATAAATTTTCTCCC 60.430 47.826 0.00 0.00 0.00 4.30
850 879 3.194755 ACCGCAACCCATAAATTTTCTCC 59.805 43.478 0.00 0.00 0.00 3.71
851 880 4.450082 ACCGCAACCCATAAATTTTCTC 57.550 40.909 0.00 0.00 0.00 2.87
852 881 4.882842 AACCGCAACCCATAAATTTTCT 57.117 36.364 0.00 0.00 0.00 2.52
853 882 6.391537 TCTAAACCGCAACCCATAAATTTTC 58.608 36.000 0.00 0.00 0.00 2.29
854 883 6.347859 TCTAAACCGCAACCCATAAATTTT 57.652 33.333 0.00 0.00 0.00 1.82
855 884 5.986501 TCTAAACCGCAACCCATAAATTT 57.013 34.783 0.00 0.00 0.00 1.82
856 885 5.681179 GCATCTAAACCGCAACCCATAAATT 60.681 40.000 0.00 0.00 0.00 1.82
857 886 4.202111 GCATCTAAACCGCAACCCATAAAT 60.202 41.667 0.00 0.00 0.00 1.40
858 887 3.129638 GCATCTAAACCGCAACCCATAAA 59.870 43.478 0.00 0.00 0.00 1.40
859 888 2.685897 GCATCTAAACCGCAACCCATAA 59.314 45.455 0.00 0.00 0.00 1.90
860 889 2.294074 GCATCTAAACCGCAACCCATA 58.706 47.619 0.00 0.00 0.00 2.74
861 890 1.102978 GCATCTAAACCGCAACCCAT 58.897 50.000 0.00 0.00 0.00 4.00
862 891 0.963355 GGCATCTAAACCGCAACCCA 60.963 55.000 0.00 0.00 0.00 4.51
863 892 1.663379 GGGCATCTAAACCGCAACCC 61.663 60.000 0.00 0.00 0.00 4.11
864 893 0.679960 AGGGCATCTAAACCGCAACC 60.680 55.000 0.00 0.00 0.00 3.77
865 894 2.032680 TAGGGCATCTAAACCGCAAC 57.967 50.000 0.00 0.00 0.00 4.17
866 895 2.791347 TTAGGGCATCTAAACCGCAA 57.209 45.000 0.00 0.00 35.21 4.85
867 896 2.791347 TTTAGGGCATCTAAACCGCA 57.209 45.000 7.22 0.00 41.52 5.69
872 901 4.705023 GCCAAAGAGTTTAGGGCATCTAAA 59.295 41.667 7.22 7.22 43.45 1.85
873 902 4.018415 AGCCAAAGAGTTTAGGGCATCTAA 60.018 41.667 0.00 0.00 46.96 2.10
874 903 3.523564 AGCCAAAGAGTTTAGGGCATCTA 59.476 43.478 0.00 0.00 46.96 1.98
875 904 2.310052 AGCCAAAGAGTTTAGGGCATCT 59.690 45.455 0.00 0.00 46.96 2.90
876 905 2.728007 AGCCAAAGAGTTTAGGGCATC 58.272 47.619 0.00 0.00 46.96 3.91
877 906 2.907458 AGCCAAAGAGTTTAGGGCAT 57.093 45.000 0.00 0.00 46.96 4.40
878 907 2.618045 GCTAGCCAAAGAGTTTAGGGCA 60.618 50.000 2.29 0.00 46.96 5.36
879 908 2.017782 GCTAGCCAAAGAGTTTAGGGC 58.982 52.381 2.29 0.00 44.92 5.19
880 909 2.644676 GGCTAGCCAAAGAGTTTAGGG 58.355 52.381 29.33 0.00 35.81 3.53
881 910 2.644676 GGGCTAGCCAAAGAGTTTAGG 58.355 52.381 34.09 0.00 37.98 2.69
882 911 2.093658 TCGGGCTAGCCAAAGAGTTTAG 60.094 50.000 34.09 11.77 37.98 1.85
999 1041 1.731700 GTGAGCGGCGTAGTCCATA 59.268 57.895 9.37 0.00 0.00 2.74
1285 1327 1.135721 GGCGGTGAAGTAGTAATCCGT 59.864 52.381 0.00 0.00 40.05 4.69
1371 1413 1.153745 CTTCACCGCCTCTCTTCCG 60.154 63.158 0.00 0.00 0.00 4.30
1479 1521 1.371467 TCCACCTGAATCCACCACAT 58.629 50.000 0.00 0.00 0.00 3.21
1522 1564 1.076339 ATTGGTAACCATGCCCCCG 60.076 57.895 0.00 0.00 31.53 5.73
1553 1595 1.144969 TCGATTCGACAGCAAACCAC 58.855 50.000 4.29 0.00 0.00 4.16
1554 1596 2.093306 ATCGATTCGACAGCAAACCA 57.907 45.000 11.56 0.00 39.18 3.67
1555 1597 2.673368 AGAATCGATTCGACAGCAAACC 59.327 45.455 27.69 4.93 41.56 3.27
1556 1598 3.999229 AGAATCGATTCGACAGCAAAC 57.001 42.857 27.69 5.41 41.56 2.93
1560 1602 3.000724 CCAAGAAGAATCGATTCGACAGC 59.999 47.826 27.69 17.50 41.56 4.40
1575 1617 7.445121 TCACCAACTATATCTATGCCAAGAAG 58.555 38.462 0.00 0.00 0.00 2.85
1601 1647 7.393515 TCGAGTTATCTAAGATTATGGCTAGCA 59.606 37.037 18.24 2.97 0.00 3.49
1615 1662 4.672587 AGGCAGCAATCGAGTTATCTAA 57.327 40.909 0.00 0.00 0.00 2.10
1643 1690 4.028993 TCCCAAACCTAGAACCAATGAC 57.971 45.455 0.00 0.00 0.00 3.06
1645 1692 5.723295 CAATTCCCAAACCTAGAACCAATG 58.277 41.667 0.00 0.00 0.00 2.82
1648 1695 3.161866 GCAATTCCCAAACCTAGAACCA 58.838 45.455 0.00 0.00 0.00 3.67
1667 1714 1.950216 TGTGATTTTTACAGTGCGGCA 59.050 42.857 0.00 0.00 0.00 5.69
1669 1716 4.800993 TGTTTTGTGATTTTTACAGTGCGG 59.199 37.500 0.00 0.00 0.00 5.69
1707 1754 8.255905 TGCAATTTCCAAACCATTTCAATTTTT 58.744 25.926 0.00 0.00 0.00 1.94
1733 1780 1.453155 CCAGTTTAAGATGCAGGCGT 58.547 50.000 0.00 0.00 0.00 5.68
1735 1782 1.133790 CTGCCAGTTTAAGATGCAGGC 59.866 52.381 0.00 1.12 44.29 4.85
1738 1785 3.076621 CAGACTGCCAGTTTAAGATGCA 58.923 45.455 0.00 0.00 0.00 3.96
1756 1803 4.278170 CCTTTTGCTTGTATGTCAACCAGA 59.722 41.667 0.00 0.00 32.18 3.86
1999 2047 4.651045 AGCAAGGTTTCATTCCAACTCTTT 59.349 37.500 0.00 0.00 0.00 2.52
2137 2185 7.088272 ACAACAGTTCCAACTAAGTTGAAAAC 58.912 34.615 20.98 0.28 45.28 2.43
2249 2297 5.236263 TGGCGAAATTACATATGCTGTACTG 59.764 40.000 1.58 0.00 40.06 2.74
2264 2312 5.329035 AGCTATGTCAAAATGGCGAAATT 57.671 34.783 0.00 0.00 38.91 1.82
2270 2318 4.207165 TCCCTAAGCTATGTCAAAATGGC 58.793 43.478 0.00 0.00 34.46 4.40
2326 2374 3.074538 AGGACATTGCCCTCAAACTAAGT 59.925 43.478 0.00 0.00 35.56 2.24
2343 2391 4.748701 AGAAAGGAGTACAGGTTAGGACA 58.251 43.478 0.00 0.00 0.00 4.02
2356 2404 6.610830 TCTTTTCACCCAAATAGAAAGGAGT 58.389 36.000 0.00 0.00 34.01 3.85
2395 2443 3.572255 TCCAAAAGCCATACCAAAGTGAC 59.428 43.478 0.00 0.00 0.00 3.67
2405 2453 5.878406 TGGTTTTCTTTCCAAAAGCCATA 57.122 34.783 0.76 0.00 40.63 2.74
2425 2473 3.893200 ACACCAATGCATCCTTATCATGG 59.107 43.478 0.00 3.71 0.00 3.66
2587 2641 4.083377 GCAATTTTCCATCACGGCAATTTT 60.083 37.500 0.00 0.00 29.31 1.82
2588 2642 3.436359 GCAATTTTCCATCACGGCAATTT 59.564 39.130 0.00 0.00 29.31 1.82
2589 2643 3.002102 GCAATTTTCCATCACGGCAATT 58.998 40.909 0.00 0.00 30.99 2.32
2590 2644 2.620242 GCAATTTTCCATCACGGCAAT 58.380 42.857 0.00 0.00 33.14 3.56
2591 2645 1.337635 GGCAATTTTCCATCACGGCAA 60.338 47.619 0.00 0.00 33.14 4.52
2799 2853 5.106277 GGGCATTTAGGATAATAGTTTCCGC 60.106 44.000 0.00 0.00 37.10 5.54
2847 2901 9.453572 AGATGCTCACTTTGAAACAAGATATAA 57.546 29.630 0.00 0.00 0.00 0.98
3127 3181 4.826733 ACCAAGTTGCAGATTGAACATACA 59.173 37.500 13.00 0.00 0.00 2.29
3142 3196 7.224362 TGAAAACAAATGAATGCTACCAAGTTG 59.776 33.333 0.00 0.00 0.00 3.16
3150 3204 7.215789 ACCAACATGAAAACAAATGAATGCTA 58.784 30.769 0.00 0.00 0.00 3.49
3563 3620 1.409427 GGGTTGAGTCCTGATAGTCCG 59.591 57.143 0.00 0.00 0.00 4.79
3565 3622 6.487299 AAATAGGGTTGAGTCCTGATAGTC 57.513 41.667 0.00 0.00 35.92 2.59
3598 3655 1.734465 GTCTTGTGGCTAGATGTGCAC 59.266 52.381 10.75 10.75 0.00 4.57
3630 3687 8.942338 CACTCAAGTGTATATGGCTAGTAAAA 57.058 34.615 1.88 0.00 40.96 1.52
3799 3856 2.285083 TGTGAAGTATTATGGCGCACC 58.715 47.619 10.83 0.00 0.00 5.01
3875 3932 4.104086 ACTGAGGATTTGGACTACATGGA 58.896 43.478 0.00 0.00 0.00 3.41
4022 4079 4.358851 TGCTAACAACAATGAAGCAACAC 58.641 39.130 7.71 0.00 42.14 3.32
4277 4334 5.723672 TGACAGTACAGAAAGACTAAGGG 57.276 43.478 0.00 0.00 0.00 3.95
4352 4409 3.249687 GGCAACAACCACCTCCTAG 57.750 57.895 0.00 0.00 0.00 3.02
5094 5207 2.986306 GCACCACACCATCAGCAGC 61.986 63.158 0.00 0.00 0.00 5.25
5160 5273 2.224646 GCCTCTTCTTCACCTCCAAGTT 60.225 50.000 0.00 0.00 0.00 2.66
5463 5582 3.497297 ACCAAACAACGGAAAAGACAC 57.503 42.857 0.00 0.00 0.00 3.67
5538 5659 1.455408 GAAGCAATTTTCCGGCGTTTG 59.545 47.619 6.01 0.00 0.00 2.93
5591 5712 2.851263 TAACAATCTTCGCCACCAGT 57.149 45.000 0.00 0.00 0.00 4.00
5603 5724 9.891828 TCAACAGACACAAAATACATAACAATC 57.108 29.630 0.00 0.00 0.00 2.67
5741 5887 2.039480 CCCATGATCACCGATTCATCCT 59.961 50.000 0.00 0.00 0.00 3.24
5745 5891 0.532640 CGCCCATGATCACCGATTCA 60.533 55.000 0.00 0.00 0.00 2.57
5778 5924 5.410067 ACAACAACAACAACAAGAAGGATG 58.590 37.500 0.00 0.00 0.00 3.51
5785 5931 5.649602 ACAACAACAACAACAACAACAAG 57.350 34.783 0.00 0.00 0.00 3.16
5786 5932 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5787 5933 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5788 5934 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5789 5935 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5790 5936 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5791 5937 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5792 5938 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5793 5939 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5794 5940 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5795 5941 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5796 5942 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5797 5943 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5798 5944 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5799 5945 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5800 5946 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5801 5947 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5802 5948 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5803 5949 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5804 5950 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5805 5951 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5806 5952 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5807 5953 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5808 5954 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5809 5955 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5810 5956 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5811 5957 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5812 5958 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5813 5959 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5814 5960 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5815 5961 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5816 5962 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5817 5963 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5818 5964 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5819 5965 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5820 5966 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5821 5967 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5822 5968 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5823 5969 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5824 5970 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5825 5971 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5826 5972 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5827 5973 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5828 5974 6.422776 AAACAACAACAACAACAACAACAA 57.577 29.167 0.00 0.00 0.00 2.83
5829 5975 6.422776 AAAACAACAACAACAACAACAACA 57.577 29.167 0.00 0.00 0.00 3.33
5855 6001 3.947834 CACCAAGGATACAACAATCCCTC 59.052 47.826 0.00 0.00 45.74 4.30
5865 6011 4.469586 TCTTCATGCTACACCAAGGATACA 59.530 41.667 0.00 0.00 41.41 2.29
5896 6043 4.671569 CTAGCGCGGCCCCTGATC 62.672 72.222 8.83 0.00 0.00 2.92
5903 6050 3.878374 GAATACCCCTAGCGCGGCC 62.878 68.421 8.83 0.00 0.00 6.13
5905 6052 0.600255 CAAGAATACCCCTAGCGCGG 60.600 60.000 8.83 0.00 0.00 6.46
5906 6053 0.600255 CCAAGAATACCCCTAGCGCG 60.600 60.000 0.00 0.00 0.00 6.86
5907 6054 0.250338 CCCAAGAATACCCCTAGCGC 60.250 60.000 0.00 0.00 0.00 5.92
5908 6055 1.070289 GACCCAAGAATACCCCTAGCG 59.930 57.143 0.00 0.00 0.00 4.26
5909 6056 2.409570 AGACCCAAGAATACCCCTAGC 58.590 52.381 0.00 0.00 0.00 3.42
5910 6057 4.037927 TGAAGACCCAAGAATACCCCTAG 58.962 47.826 0.00 0.00 0.00 3.02
5911 6058 4.083080 TGAAGACCCAAGAATACCCCTA 57.917 45.455 0.00 0.00 0.00 3.53
5913 6060 3.053619 ACATGAAGACCCAAGAATACCCC 60.054 47.826 0.00 0.00 0.00 4.95
5914 6061 3.947834 CACATGAAGACCCAAGAATACCC 59.052 47.826 0.00 0.00 0.00 3.69
5915 6062 4.843728 TCACATGAAGACCCAAGAATACC 58.156 43.478 0.00 0.00 0.00 2.73
5916 6063 7.920738 GTATTCACATGAAGACCCAAGAATAC 58.079 38.462 7.95 0.00 39.58 1.89
5940 6087 8.478877 TCAACACTGTTTTGTAAAAATATGGGT 58.521 29.630 6.58 0.00 0.00 4.51
5941 6088 8.879342 TCAACACTGTTTTGTAAAAATATGGG 57.121 30.769 6.58 0.00 0.00 4.00
5947 6094 8.017946 GCCAAAATCAACACTGTTTTGTAAAAA 58.982 29.630 6.58 0.00 39.80 1.94
5949 6096 6.650807 TGCCAAAATCAACACTGTTTTGTAAA 59.349 30.769 6.58 0.00 39.80 2.01
5950 6097 6.166279 TGCCAAAATCAACACTGTTTTGTAA 58.834 32.000 6.58 0.00 39.80 2.41
5951 6098 5.724328 TGCCAAAATCAACACTGTTTTGTA 58.276 33.333 6.58 0.00 39.80 2.41
5952 6099 4.573900 TGCCAAAATCAACACTGTTTTGT 58.426 34.783 6.58 0.00 39.80 2.83
5953 6100 5.542616 TTGCCAAAATCAACACTGTTTTG 57.457 34.783 0.29 0.29 40.63 2.44
5954 6101 6.016777 TGTTTTGCCAAAATCAACACTGTTTT 60.017 30.769 5.81 0.00 32.22 2.43
5955 6102 5.471456 TGTTTTGCCAAAATCAACACTGTTT 59.529 32.000 5.81 0.00 32.22 2.83
5956 6103 4.999950 TGTTTTGCCAAAATCAACACTGTT 59.000 33.333 5.81 0.00 32.22 3.16
5957 6104 4.573900 TGTTTTGCCAAAATCAACACTGT 58.426 34.783 5.81 0.00 32.22 3.55
5958 6105 5.542616 TTGTTTTGCCAAAATCAACACTG 57.457 34.783 5.81 0.00 32.57 3.66
5960 6107 6.116680 TCATTGTTTTGCCAAAATCAACAC 57.883 33.333 5.81 0.00 37.64 3.32
5961 6108 6.939132 ATCATTGTTTTGCCAAAATCAACA 57.061 29.167 5.81 0.00 37.64 3.33
5962 6109 9.896263 AATTATCATTGTTTTGCCAAAATCAAC 57.104 25.926 5.81 0.00 37.64 3.18
5966 6113 9.609950 CGAAAATTATCATTGTTTTGCCAAAAT 57.390 25.926 5.81 0.00 32.22 1.82
5967 6114 8.830580 TCGAAAATTATCATTGTTTTGCCAAAA 58.169 25.926 0.00 0.00 0.00 2.44
5968 6115 8.370493 TCGAAAATTATCATTGTTTTGCCAAA 57.630 26.923 0.00 0.00 0.00 3.28
5970 6117 7.953158 TTCGAAAATTATCATTGTTTTGCCA 57.047 28.000 0.00 0.00 0.00 4.92
5971 6118 9.657121 TTTTTCGAAAATTATCATTGTTTTGCC 57.343 25.926 23.05 0.00 0.00 4.52
5988 6135 8.034058 ACCAAAATCATTGTTGTTTTTCGAAA 57.966 26.923 6.47 6.47 34.20 3.46
5989 6136 7.602517 ACCAAAATCATTGTTGTTTTTCGAA 57.397 28.000 0.00 0.00 34.20 3.71
5990 6137 8.703604 TTACCAAAATCATTGTTGTTTTTCGA 57.296 26.923 0.00 0.00 34.20 3.71
5991 6138 9.760660 TTTTACCAAAATCATTGTTGTTTTTCG 57.239 25.926 0.00 0.00 34.20 3.46
6010 6157 8.908903 GGGTATTCATGTGTATTCATTTTACCA 58.091 33.333 0.00 0.00 32.07 3.25
6012 6159 8.073768 CCGGGTATTCATGTGTATTCATTTTAC 58.926 37.037 0.00 0.00 0.00 2.01
6013 6160 7.776030 ACCGGGTATTCATGTGTATTCATTTTA 59.224 33.333 6.32 0.00 0.00 1.52
6014 6161 6.605594 ACCGGGTATTCATGTGTATTCATTTT 59.394 34.615 6.32 0.00 0.00 1.82
6015 6162 6.126409 ACCGGGTATTCATGTGTATTCATTT 58.874 36.000 6.32 0.00 0.00 2.32
6016 6163 5.690865 ACCGGGTATTCATGTGTATTCATT 58.309 37.500 6.32 0.00 0.00 2.57
6019 6166 6.050432 TGTAACCGGGTATTCATGTGTATTC 58.950 40.000 0.51 0.00 0.00 1.75
6022 6169 5.417754 TTGTAACCGGGTATTCATGTGTA 57.582 39.130 0.51 0.00 0.00 2.90
6023 6170 3.985019 TGTAACCGGGTATTCATGTGT 57.015 42.857 0.51 0.00 0.00 3.72
6024 6171 5.828299 ATTTGTAACCGGGTATTCATGTG 57.172 39.130 0.51 0.00 0.00 3.21
6026 6173 6.972328 CAGAAATTTGTAACCGGGTATTCATG 59.028 38.462 0.51 0.00 0.00 3.07
6027 6174 6.096282 CCAGAAATTTGTAACCGGGTATTCAT 59.904 38.462 0.51 0.00 0.00 2.57
6028 6175 5.416326 CCAGAAATTTGTAACCGGGTATTCA 59.584 40.000 0.51 0.00 0.00 2.57
6029 6176 5.648960 TCCAGAAATTTGTAACCGGGTATTC 59.351 40.000 0.51 1.54 0.00 1.75
6032 6179 4.637387 TCCAGAAATTTGTAACCGGGTA 57.363 40.909 6.32 0.00 0.00 3.69
6034 6181 3.057104 GGTTCCAGAAATTTGTAACCGGG 60.057 47.826 6.32 0.00 0.00 5.73
6035 6182 4.168922 GGTTCCAGAAATTTGTAACCGG 57.831 45.455 0.00 0.00 0.00 5.28
6037 6184 3.571571 GCGGTTCCAGAAATTTGTAACC 58.428 45.455 9.09 9.09 34.38 2.85
6038 6185 3.004944 TGGCGGTTCCAGAAATTTGTAAC 59.995 43.478 0.00 0.00 40.72 2.50
6040 6187 2.865079 TGGCGGTTCCAGAAATTTGTA 58.135 42.857 0.00 0.00 40.72 2.41
6041 6188 1.698506 TGGCGGTTCCAGAAATTTGT 58.301 45.000 0.00 0.00 40.72 2.83
6046 6193 3.480457 AACCAGTGGCGGTTCCAGAAA 62.480 52.381 9.78 0.00 46.60 2.52
6047 6194 1.990160 AACCAGTGGCGGTTCCAGAA 61.990 55.000 9.78 0.00 46.60 3.02
6048 6195 2.448582 AACCAGTGGCGGTTCCAGA 61.449 57.895 9.78 0.00 46.60 3.86
6049 6196 2.113139 AACCAGTGGCGGTTCCAG 59.887 61.111 9.78 0.00 46.60 3.86
6050 6197 2.203280 CAACCAGTGGCGGTTCCA 60.203 61.111 9.78 0.00 46.60 3.53
6051 6198 2.983592 CCAACCAGTGGCGGTTCC 60.984 66.667 9.78 0.00 46.60 3.62
6052 6199 2.983592 CCCAACCAGTGGCGGTTC 60.984 66.667 9.78 0.00 46.60 3.62
6061 6208 1.202582 CTGTCTACTCGTCCCAACCAG 59.797 57.143 0.00 0.00 0.00 4.00
6062 6209 1.254026 CTGTCTACTCGTCCCAACCA 58.746 55.000 0.00 0.00 0.00 3.67
6063 6210 0.108756 GCTGTCTACTCGTCCCAACC 60.109 60.000 0.00 0.00 0.00 3.77
6064 6211 0.889306 AGCTGTCTACTCGTCCCAAC 59.111 55.000 0.00 0.00 0.00 3.77
6066 6213 2.502142 TAAGCTGTCTACTCGTCCCA 57.498 50.000 0.00 0.00 0.00 4.37
6086 6233 7.986085 ACTAGTGACATGACAGCTTATTTTT 57.014 32.000 0.00 0.00 0.00 1.94
6118 6735 4.993705 TGGAAAGTAAGGTGTTCCAGAT 57.006 40.909 0.25 0.00 44.57 2.90
6127 6745 5.960704 ACCCTTGTAAATGGAAAGTAAGGT 58.039 37.500 0.00 0.00 34.94 3.50
6134 6752 5.886609 TGATCAGACCCTTGTAAATGGAAA 58.113 37.500 0.00 0.00 34.94 3.13
6145 6763 1.743772 CGCCGATTTGATCAGACCCTT 60.744 52.381 0.00 0.00 0.00 3.95
6150 6768 0.534873 TGACCGCCGATTTGATCAGA 59.465 50.000 0.00 0.00 0.00 3.27
6152 6770 0.036858 TGTGACCGCCGATTTGATCA 60.037 50.000 0.00 0.00 0.00 2.92
6156 6774 2.324330 TGCTGTGACCGCCGATTTG 61.324 57.895 0.00 0.00 0.00 2.32
6164 6782 0.876777 TGTAAACCGTGCTGTGACCG 60.877 55.000 0.00 0.00 0.00 4.79
6168 6786 2.665519 GCTTGATGTAAACCGTGCTGTG 60.666 50.000 0.00 0.00 0.00 3.66
6205 6823 0.831966 AACCAGGGTCAACGTGTACA 59.168 50.000 0.00 0.00 33.19 2.90
6206 6824 1.957668 AAACCAGGGTCAACGTGTAC 58.042 50.000 0.00 0.00 33.19 2.90
6211 6829 4.904253 TTTAGAAAAACCAGGGTCAACG 57.096 40.909 0.00 0.00 0.00 4.10
6219 6837 3.363341 TGCGGCTTTTAGAAAAACCAG 57.637 42.857 0.00 2.76 34.57 4.00
6222 6840 5.048153 AGAGATGCGGCTTTTAGAAAAAC 57.952 39.130 0.00 0.00 0.00 2.43
6231 6849 5.010012 CCCAATAAATAAGAGATGCGGCTTT 59.990 40.000 0.00 0.00 0.00 3.51
6239 6857 9.355916 GTTTAGAAGCCCCAATAAATAAGAGAT 57.644 33.333 0.00 0.00 0.00 2.75
6302 6926 5.497474 TCTCAGGTAGAAAATAAGTTGCCC 58.503 41.667 0.00 0.00 0.00 5.36
6303 6927 6.879458 TCTTCTCAGGTAGAAAATAAGTTGCC 59.121 38.462 0.00 0.00 43.66 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.