Multiple sequence alignment - TraesCS2D01G095000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G095000 chr2D 100.000 5928 0 0 1468 7395 46934990 46929063 0.000000e+00 10948.0
1 TraesCS2D01G095000 chr2D 100.000 1086 0 0 1 1086 46936457 46935372 0.000000e+00 2006.0
2 TraesCS2D01G095000 chr2D 88.525 854 61 17 6075 6915 46697502 46698331 0.000000e+00 1000.0
3 TraesCS2D01G095000 chr2D 100.000 367 0 0 7029 7395 46699189 46699555 0.000000e+00 678.0
4 TraesCS2D01G095000 chr2D 87.225 454 52 6 1552 2002 469945360 469945810 5.120000e-141 512.0
5 TraesCS2D01G095000 chr2D 87.609 460 32 17 6678 7135 46867727 46867291 1.840000e-140 510.0
6 TraesCS2D01G095000 chr2D 95.484 155 7 0 7241 7395 46853592 46853438 1.590000e-61 248.0
7 TraesCS2D01G095000 chr2D 85.356 239 30 4 380 616 471397377 471397142 7.410000e-60 243.0
8 TraesCS2D01G095000 chr2D 86.567 201 23 4 409 608 555113608 555113411 1.250000e-52 219.0
9 TraesCS2D01G095000 chr2D 79.532 171 26 8 92 261 399351766 399351604 6.060000e-21 113.0
10 TraesCS2D01G095000 chr2B 93.510 3698 184 25 1473 5141 74252040 74248370 0.000000e+00 5448.0
11 TraesCS2D01G095000 chr2B 92.304 1975 88 30 5463 7395 74248203 74246251 0.000000e+00 2747.0
12 TraesCS2D01G095000 chr2B 89.235 353 11 6 649 997 74252971 74252642 4.130000e-112 416.0
13 TraesCS2D01G095000 chr2B 85.922 412 31 17 7009 7395 74022771 74023180 1.480000e-111 414.0
14 TraesCS2D01G095000 chr2B 93.162 234 15 1 6075 6308 74021030 74021262 7.100000e-90 342.0
15 TraesCS2D01G095000 chr2B 94.286 175 6 2 5255 5429 74248371 74248201 1.580000e-66 265.0
16 TraesCS2D01G095000 chr2B 95.420 131 6 0 6299 6429 74021649 74021779 7.520000e-50 209.0
17 TraesCS2D01G095000 chr2B 96.512 86 3 0 998 1083 74252166 74252081 7.730000e-30 143.0
18 TraesCS2D01G095000 chr2B 91.667 72 6 0 10 81 74253322 74253251 4.720000e-17 100.0
19 TraesCS2D01G095000 chr2A 95.000 2840 107 15 2368 5200 50155668 50152857 0.000000e+00 4425.0
20 TraesCS2D01G095000 chr2A 93.185 2113 97 32 5302 7395 50152812 50150728 0.000000e+00 3061.0
21 TraesCS2D01G095000 chr2A 90.531 866 60 14 1473 2323 50156521 50155663 0.000000e+00 1125.0
22 TraesCS2D01G095000 chr2A 86.087 345 24 5 576 917 50157246 50156923 4.250000e-92 350.0
23 TraesCS2D01G095000 chr2A 88.031 259 19 7 6722 6978 50062845 50063093 5.610000e-76 296.0
24 TraesCS2D01G095000 chr2A 96.364 165 6 0 7231 7395 50063225 50063389 9.450000e-69 272.0
25 TraesCS2D01G095000 chr2A 88.557 201 22 1 409 609 613061788 613061589 7.410000e-60 243.0
26 TraesCS2D01G095000 chr2A 87.562 201 14 6 6764 6963 50063721 50063911 9.660000e-54 222.0
27 TraesCS2D01G095000 chr2A 77.891 294 49 9 330 615 96138807 96138522 1.280000e-37 169.0
28 TraesCS2D01G095000 chr2A 96.552 87 2 1 7034 7120 50063101 50063186 7.730000e-30 143.0
29 TraesCS2D01G095000 chr2A 90.244 41 4 0 5217 5257 194131251 194131211 4.000000e-03 54.7
30 TraesCS2D01G095000 chr2A 100.000 28 0 0 7135 7162 50063188 50063215 1.300000e-02 52.8
31 TraesCS2D01G095000 chr2A 100.000 28 0 0 5218 5245 623149663 623149690 1.300000e-02 52.8
32 TraesCS2D01G095000 chr3D 88.591 447 46 4 1558 2002 396479288 396479731 8.440000e-149 538.0
33 TraesCS2D01G095000 chr3D 86.996 223 27 1 380 600 177774770 177774548 4.430000e-62 250.0
34 TraesCS2D01G095000 chr3D 100.000 28 0 0 5219 5246 379826266 379826239 1.300000e-02 52.8
35 TraesCS2D01G095000 chr5D 88.079 453 49 5 1552 2002 131503925 131503476 3.930000e-147 532.0
36 TraesCS2D01G095000 chr5D 83.621 232 34 3 380 609 495798180 495797951 1.620000e-51 215.0
37 TraesCS2D01G095000 chr3B 87.638 453 51 5 1552 2002 684746187 684745738 8.500000e-144 521.0
38 TraesCS2D01G095000 chr3B 87.196 453 53 5 1552 2002 60128764 60129213 1.840000e-140 510.0
39 TraesCS2D01G095000 chr3B 100.000 28 0 0 5219 5246 495475566 495475593 1.300000e-02 52.8
40 TraesCS2D01G095000 chr4A 85.520 221 30 1 380 598 563087585 563087805 5.770000e-56 230.0
41 TraesCS2D01G095000 chr6B 84.052 232 35 2 380 609 92613237 92613468 9.660000e-54 222.0
42 TraesCS2D01G095000 chr6D 83.402 241 32 7 382 617 289633744 289633507 4.490000e-52 217.0
43 TraesCS2D01G095000 chr7D 82.833 233 34 6 380 609 528681955 528681726 3.500000e-48 204.0
44 TraesCS2D01G095000 chr1B 86.806 144 17 2 94 237 649189828 649189969 7.680000e-35 159.0
45 TraesCS2D01G095000 chr1B 87.500 48 5 1 5200 5246 148417904 148417857 4.000000e-03 54.7
46 TraesCS2D01G095000 chr1B 87.500 48 5 1 5200 5246 533615941 533615894 4.000000e-03 54.7
47 TraesCS2D01G095000 chrUn 81.379 145 25 2 89 233 303564962 303564820 4.690000e-22 117.0
48 TraesCS2D01G095000 chr1A 78.882 161 30 4 92 251 303799241 303799398 1.010000e-18 106.0
49 TraesCS2D01G095000 chr6A 100.000 28 0 0 5218 5245 594981021 594980994 1.300000e-02 52.8
50 TraesCS2D01G095000 chr5A 96.875 32 0 1 5219 5249 585407076 585407107 1.300000e-02 52.8
51 TraesCS2D01G095000 chr3A 100.000 28 0 0 5219 5246 503822368 503822395 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G095000 chr2D 46929063 46936457 7394 True 6477.000000 10948 100.000000 1 7395 2 chr2D.!!$R6 7394
1 TraesCS2D01G095000 chr2D 46697502 46699555 2053 False 839.000000 1000 94.262500 6075 7395 2 chr2D.!!$F2 1320
2 TraesCS2D01G095000 chr2B 74246251 74253322 7071 True 1519.833333 5448 92.919000 10 7395 6 chr2B.!!$R1 7385
3 TraesCS2D01G095000 chr2B 74021030 74023180 2150 False 321.666667 414 91.501333 6075 7395 3 chr2B.!!$F1 1320
4 TraesCS2D01G095000 chr2A 50150728 50157246 6518 True 2240.250000 4425 91.200750 576 7395 4 chr2A.!!$R4 6819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 795 0.036306 AACTTTCTGGAACGGCCGAT 59.964 50.0 35.90 23.25 40.66 4.18 F
1755 2262 0.108138 CTCAAGAAGGTACTGGGGCG 60.108 60.0 0.00 0.00 40.86 6.13 F
2527 3050 0.035820 TGGTCCCTGTATCGCAAACC 60.036 55.0 0.00 0.00 0.00 3.27 F
3376 3907 0.400213 TCCTTGACATCACACCCCAC 59.600 55.0 0.00 0.00 0.00 4.61 F
3700 4232 0.466543 TGGTCCACGTGTAACAAGCT 59.533 50.0 15.65 0.00 35.74 3.74 F
4840 5385 0.625316 ATGCCACTGCCAATGGTCTA 59.375 50.0 0.00 0.00 39.63 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2527 3050 0.379669 ACGACGATACTTACCGGCAG 59.620 55.0 0.0 0.0 32.40 4.85 R
3370 3901 0.252057 GCTGGGGTTAAATGTGGGGT 60.252 55.0 0.0 0.0 0.00 4.95 R
3573 4105 0.449388 GCCTGACGAGAATTGGCTTG 59.551 55.0 0.0 0.0 40.36 4.01 R
4301 4842 0.946221 GTGACCGAGTGCTGGTGAAG 60.946 60.0 0.0 0.0 40.63 3.02 R
5626 6175 2.038557 TGTTAAGAGGACAGACAAGGGC 59.961 50.0 0.0 0.0 0.00 5.19 R
6754 8099 0.178926 TCCAGTAACCCTTCCACCGA 60.179 55.0 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.202544 CTCACGCTCCGACTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
76 77 1.153765 CGCTCCGACTGCTCAATGA 60.154 57.895 0.00 0.00 0.00 2.57
81 82 1.344438 TCCGACTGCTCAATGACAAGT 59.656 47.619 0.00 0.00 0.00 3.16
82 83 2.146342 CCGACTGCTCAATGACAAGTT 58.854 47.619 0.00 0.00 0.00 2.66
90 115 3.123621 GCTCAATGACAAGTTGTAGACGG 59.876 47.826 8.88 0.00 0.00 4.79
92 117 2.805671 CAATGACAAGTTGTAGACGGCA 59.194 45.455 8.88 1.70 0.00 5.69
96 121 0.163788 CAAGTTGTAGACGGCAAGCG 59.836 55.000 0.00 0.00 0.00 4.68
99 124 0.163146 GTTGTAGACGGCAAGCGTTC 59.837 55.000 0.00 0.00 0.00 3.95
104 129 2.717809 GACGGCAAGCGTTCGTCTC 61.718 63.158 14.66 0.00 46.49 3.36
105 130 3.479269 CGGCAAGCGTTCGTCTCC 61.479 66.667 0.00 0.00 0.00 3.71
124 149 4.765611 CTCGTCGTGAGCAATCGA 57.234 55.556 0.00 0.00 38.03 3.59
129 154 0.179181 GTCGTGAGCAATCGACGGTA 60.179 55.000 10.60 0.00 44.70 4.02
139 164 2.001361 ATCGACGGTAGACCCAAGCG 62.001 60.000 0.00 0.00 43.15 4.68
156 181 2.270527 GAGGGGCTGCTTGTCCTC 59.729 66.667 12.91 12.91 41.10 3.71
160 185 2.343758 GGCTGCTTGTCCTCGTCA 59.656 61.111 0.00 0.00 0.00 4.35
168 193 0.976641 TTGTCCTCGTCAAGCTCCAT 59.023 50.000 0.00 0.00 0.00 3.41
182 207 4.552365 CCATCGGCATCCTGCGGT 62.552 66.667 6.57 0.00 46.21 5.68
216 241 3.827898 CTCCGCCGTGTCCCTCTC 61.828 72.222 0.00 0.00 0.00 3.20
225 250 1.151810 TGTCCCTCTCCCTTTGCCT 60.152 57.895 0.00 0.00 0.00 4.75
232 257 3.580604 CTCCCTTTGCCTGCTGCCT 62.581 63.158 0.00 0.00 40.16 4.75
235 260 1.605738 CCTTTGCCTGCTGCCTCTT 60.606 57.895 0.00 0.00 40.16 2.85
239 264 2.033141 GCCTGCTGCCTCTTGTGA 59.967 61.111 0.00 0.00 0.00 3.58
267 292 2.202892 GGGCACTACCGCACTAGC 60.203 66.667 0.00 0.00 40.62 3.42
268 293 2.577059 GGCACTACCGCACTAGCA 59.423 61.111 0.00 0.00 42.27 3.49
269 294 1.810030 GGCACTACCGCACTAGCAC 60.810 63.158 0.00 0.00 42.27 4.40
270 295 1.810030 GCACTACCGCACTAGCACC 60.810 63.158 0.00 0.00 42.27 5.01
272 297 1.608336 ACTACCGCACTAGCACCCA 60.608 57.895 0.00 0.00 42.27 4.51
273 298 0.976073 ACTACCGCACTAGCACCCAT 60.976 55.000 0.00 0.00 42.27 4.00
274 299 0.178068 CTACCGCACTAGCACCCATT 59.822 55.000 0.00 0.00 42.27 3.16
275 300 0.107897 TACCGCACTAGCACCCATTG 60.108 55.000 0.00 0.00 42.27 2.82
302 327 2.125912 CAGAGGACCTGCCGAACG 60.126 66.667 0.00 0.00 43.43 3.95
309 334 3.702048 CCTGCCGAACGGGGAAGA 61.702 66.667 15.01 0.00 41.71 2.87
311 336 3.665675 CTGCCGAACGGGGAAGAGG 62.666 68.421 15.01 0.00 34.24 3.69
313 338 4.468689 CCGAACGGGGAAGAGGGC 62.469 72.222 5.25 0.00 0.00 5.19
314 339 3.702048 CGAACGGGGAAGAGGGCA 61.702 66.667 0.00 0.00 0.00 5.36
403 428 4.193334 CGACGCTGCAGATCCGGA 62.193 66.667 20.43 6.61 0.00 5.14
404 429 2.279120 GACGCTGCAGATCCGGAG 60.279 66.667 20.43 0.00 0.00 4.63
405 430 4.521062 ACGCTGCAGATCCGGAGC 62.521 66.667 20.43 13.00 45.97 4.70
407 432 2.588314 GCTGCAGATCCGGAGCTG 60.588 66.667 38.97 38.97 45.95 4.24
418 443 3.785859 GGAGCTGCCCGATGTCCA 61.786 66.667 0.00 0.00 0.00 4.02
419 444 2.512515 GAGCTGCCCGATGTCCAC 60.513 66.667 0.00 0.00 0.00 4.02
420 445 4.101448 AGCTGCCCGATGTCCACC 62.101 66.667 0.00 0.00 0.00 4.61
421 446 4.101448 GCTGCCCGATGTCCACCT 62.101 66.667 0.00 0.00 0.00 4.00
422 447 2.671070 CTGCCCGATGTCCACCTT 59.329 61.111 0.00 0.00 0.00 3.50
423 448 1.746615 CTGCCCGATGTCCACCTTG 60.747 63.158 0.00 0.00 0.00 3.61
424 449 2.438434 GCCCGATGTCCACCTTGG 60.438 66.667 0.00 0.00 39.43 3.61
425 450 2.966732 GCCCGATGTCCACCTTGGA 61.967 63.158 0.00 0.00 45.98 3.53
432 457 3.319198 TCCACCTTGGACCGCTCC 61.319 66.667 0.00 0.00 42.67 4.70
433 458 3.636231 CCACCTTGGACCGCTCCA 61.636 66.667 0.00 0.00 45.68 3.86
439 464 3.565214 TGGACCGCTCCAAGGCAA 61.565 61.111 0.00 0.00 44.26 4.52
440 465 2.044946 GGACCGCTCCAAGGCAAT 60.045 61.111 0.00 0.00 36.42 3.56
441 466 2.409870 GGACCGCTCCAAGGCAATG 61.410 63.158 0.00 0.00 36.42 2.82
442 467 3.056313 GACCGCTCCAAGGCAATGC 62.056 63.158 0.00 0.00 0.00 3.56
443 468 4.183686 CCGCTCCAAGGCAATGCG 62.184 66.667 0.00 0.00 45.22 4.73
444 469 4.183686 CGCTCCAAGGCAATGCGG 62.184 66.667 0.00 0.00 42.46 5.69
445 470 2.751436 GCTCCAAGGCAATGCGGA 60.751 61.111 0.00 0.00 0.00 5.54
446 471 2.768492 GCTCCAAGGCAATGCGGAG 61.768 63.158 19.09 19.09 46.53 4.63
447 472 2.045045 TCCAAGGCAATGCGGAGG 60.045 61.111 0.00 0.31 0.00 4.30
448 473 3.142838 CCAAGGCAATGCGGAGGG 61.143 66.667 0.00 0.00 0.00 4.30
449 474 2.361610 CAAGGCAATGCGGAGGGT 60.362 61.111 0.00 0.00 0.00 4.34
450 475 2.044946 AAGGCAATGCGGAGGGTC 60.045 61.111 0.00 0.00 0.00 4.46
451 476 2.905996 AAGGCAATGCGGAGGGTCA 61.906 57.895 0.00 0.00 0.00 4.02
452 477 2.825836 GGCAATGCGGAGGGTCAG 60.826 66.667 0.00 0.00 0.00 3.51
453 478 3.512516 GCAATGCGGAGGGTCAGC 61.513 66.667 0.00 0.00 38.08 4.26
454 479 2.270205 CAATGCGGAGGGTCAGCT 59.730 61.111 0.87 0.00 38.41 4.24
455 480 1.817099 CAATGCGGAGGGTCAGCTC 60.817 63.158 0.87 0.00 38.41 4.09
456 481 3.036429 AATGCGGAGGGTCAGCTCC 62.036 63.158 0.00 0.00 38.41 4.70
457 482 3.991924 ATGCGGAGGGTCAGCTCCT 62.992 63.158 0.00 0.00 38.41 3.69
461 486 3.202467 GAGGGTCAGCTCCTCGTC 58.798 66.667 4.31 0.00 41.01 4.20
462 487 2.752238 AGGGTCAGCTCCTCGTCG 60.752 66.667 0.00 0.00 0.00 5.12
463 488 2.750637 GGGTCAGCTCCTCGTCGA 60.751 66.667 0.00 0.00 0.00 4.20
464 489 2.122167 GGGTCAGCTCCTCGTCGAT 61.122 63.158 0.00 0.00 0.00 3.59
465 490 1.064946 GGTCAGCTCCTCGTCGATG 59.935 63.158 0.00 0.00 0.00 3.84
466 491 1.658686 GGTCAGCTCCTCGTCGATGT 61.659 60.000 4.21 0.00 0.00 3.06
467 492 0.248296 GTCAGCTCCTCGTCGATGTC 60.248 60.000 4.21 0.00 0.00 3.06
468 493 0.676782 TCAGCTCCTCGTCGATGTCA 60.677 55.000 4.21 0.00 0.00 3.58
469 494 0.171231 CAGCTCCTCGTCGATGTCAA 59.829 55.000 4.21 0.00 0.00 3.18
470 495 0.171455 AGCTCCTCGTCGATGTCAAC 59.829 55.000 4.21 0.00 0.00 3.18
471 496 1.134530 GCTCCTCGTCGATGTCAACG 61.135 60.000 4.21 0.00 40.17 4.10
472 497 0.168348 CTCCTCGTCGATGTCAACGT 59.832 55.000 4.21 0.00 39.78 3.99
473 498 0.594602 TCCTCGTCGATGTCAACGTT 59.405 50.000 4.21 0.00 39.78 3.99
474 499 0.708370 CCTCGTCGATGTCAACGTTG 59.292 55.000 22.35 22.35 39.78 4.10
475 500 0.708370 CTCGTCGATGTCAACGTTGG 59.292 55.000 27.02 11.46 39.78 3.77
476 501 0.311477 TCGTCGATGTCAACGTTGGA 59.689 50.000 27.02 15.01 39.78 3.53
477 502 0.708370 CGTCGATGTCAACGTTGGAG 59.292 55.000 27.02 14.02 34.30 3.86
478 503 0.438830 GTCGATGTCAACGTTGGAGC 59.561 55.000 27.02 15.84 0.00 4.70
479 504 0.317160 TCGATGTCAACGTTGGAGCT 59.683 50.000 27.02 10.41 0.00 4.09
480 505 1.542472 TCGATGTCAACGTTGGAGCTA 59.458 47.619 27.02 5.45 0.00 3.32
481 506 1.920574 CGATGTCAACGTTGGAGCTAG 59.079 52.381 27.02 11.43 0.00 3.42
482 507 2.415491 CGATGTCAACGTTGGAGCTAGA 60.415 50.000 27.02 7.32 0.00 2.43
483 508 3.585862 GATGTCAACGTTGGAGCTAGAA 58.414 45.455 27.02 3.11 0.00 2.10
484 509 3.678056 TGTCAACGTTGGAGCTAGAAT 57.322 42.857 27.02 0.00 0.00 2.40
485 510 3.325870 TGTCAACGTTGGAGCTAGAATG 58.674 45.455 27.02 0.00 0.00 2.67
486 511 2.673368 GTCAACGTTGGAGCTAGAATGG 59.327 50.000 27.02 0.00 0.00 3.16
487 512 2.301870 TCAACGTTGGAGCTAGAATGGT 59.698 45.455 27.02 0.00 0.00 3.55
488 513 3.074412 CAACGTTGGAGCTAGAATGGTT 58.926 45.455 20.71 0.00 0.00 3.67
489 514 2.699954 ACGTTGGAGCTAGAATGGTTG 58.300 47.619 0.00 0.00 0.00 3.77
490 515 1.398390 CGTTGGAGCTAGAATGGTTGC 59.602 52.381 0.00 0.00 0.00 4.17
491 516 1.745653 GTTGGAGCTAGAATGGTTGCC 59.254 52.381 0.00 0.00 0.00 4.52
492 517 0.107703 TGGAGCTAGAATGGTTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
493 518 0.815615 GGAGCTAGAATGGTTGCCGG 60.816 60.000 0.00 0.00 0.00 6.13
494 519 0.178068 GAGCTAGAATGGTTGCCGGA 59.822 55.000 5.05 0.00 0.00 5.14
495 520 0.179000 AGCTAGAATGGTTGCCGGAG 59.821 55.000 5.05 0.00 0.00 4.63
496 521 1.440145 GCTAGAATGGTTGCCGGAGC 61.440 60.000 5.05 0.00 40.48 4.70
497 522 0.179000 CTAGAATGGTTGCCGGAGCT 59.821 55.000 5.05 0.00 40.80 4.09
498 523 0.178068 TAGAATGGTTGCCGGAGCTC 59.822 55.000 5.05 4.71 40.80 4.09
499 524 2.436646 AATGGTTGCCGGAGCTCG 60.437 61.111 5.05 3.03 40.80 5.03
500 525 2.852495 GAATGGTTGCCGGAGCTCGA 62.852 60.000 5.05 0.00 42.43 4.04
501 526 3.665675 ATGGTTGCCGGAGCTCGAC 62.666 63.158 5.05 0.00 42.43 4.20
502 527 4.373116 GGTTGCCGGAGCTCGACA 62.373 66.667 5.05 2.55 42.43 4.35
503 528 2.125512 GTTGCCGGAGCTCGACAT 60.126 61.111 5.05 0.00 42.43 3.06
504 529 1.741770 GTTGCCGGAGCTCGACATT 60.742 57.895 5.05 0.00 42.43 2.71
505 530 1.741401 TTGCCGGAGCTCGACATTG 60.741 57.895 5.05 0.00 42.43 2.82
506 531 3.567797 GCCGGAGCTCGACATTGC 61.568 66.667 5.05 0.00 42.43 3.56
507 532 2.125552 CCGGAGCTCGACATTGCA 60.126 61.111 7.83 0.00 42.43 4.08
508 533 1.522355 CCGGAGCTCGACATTGCAT 60.522 57.895 7.83 0.00 42.43 3.96
509 534 1.493950 CCGGAGCTCGACATTGCATC 61.494 60.000 7.83 0.00 42.43 3.91
510 535 0.807275 CGGAGCTCGACATTGCATCA 60.807 55.000 7.83 0.00 42.43 3.07
511 536 0.935898 GGAGCTCGACATTGCATCAG 59.064 55.000 7.83 0.00 0.00 2.90
512 537 1.472201 GGAGCTCGACATTGCATCAGA 60.472 52.381 7.83 0.00 0.00 3.27
513 538 2.481854 GAGCTCGACATTGCATCAGAT 58.518 47.619 0.00 0.00 0.00 2.90
514 539 2.871022 GAGCTCGACATTGCATCAGATT 59.129 45.455 0.00 0.00 0.00 2.40
515 540 2.612672 AGCTCGACATTGCATCAGATTG 59.387 45.455 0.00 0.00 0.00 2.67
516 541 2.286831 GCTCGACATTGCATCAGATTGG 60.287 50.000 0.00 0.00 0.00 3.16
517 542 3.200483 CTCGACATTGCATCAGATTGGA 58.800 45.455 0.00 0.00 0.00 3.53
518 543 3.812262 TCGACATTGCATCAGATTGGAT 58.188 40.909 0.00 0.00 0.00 3.41
519 544 3.811497 TCGACATTGCATCAGATTGGATC 59.189 43.478 0.00 0.00 0.00 3.36
520 545 3.363673 CGACATTGCATCAGATTGGATCG 60.364 47.826 0.00 0.00 0.00 3.69
521 546 2.882761 ACATTGCATCAGATTGGATCGG 59.117 45.455 0.00 0.00 0.00 4.18
522 547 3.143728 CATTGCATCAGATTGGATCGGA 58.856 45.455 0.00 0.00 37.86 4.55
523 548 3.280197 TTGCATCAGATTGGATCGGAA 57.720 42.857 0.00 0.00 37.06 4.30
524 549 3.497103 TGCATCAGATTGGATCGGAAT 57.503 42.857 0.00 0.00 37.06 3.01
525 550 3.405831 TGCATCAGATTGGATCGGAATC 58.594 45.455 7.65 7.65 37.06 2.52
526 551 2.414481 GCATCAGATTGGATCGGAATCG 59.586 50.000 9.34 6.23 37.06 3.34
535 560 3.950232 TCGGAATCGAAGAGGGGG 58.050 61.111 0.00 0.00 43.63 5.40
549 574 2.363361 GGGGGAGAAGAGGACGGA 59.637 66.667 0.00 0.00 0.00 4.69
550 575 1.758906 GGGGGAGAAGAGGACGGAG 60.759 68.421 0.00 0.00 0.00 4.63
551 576 2.428085 GGGGAGAAGAGGACGGAGC 61.428 68.421 0.00 0.00 0.00 4.70
552 577 2.776913 GGGAGAAGAGGACGGAGCG 61.777 68.421 0.00 0.00 0.00 5.03
553 578 1.749638 GGAGAAGAGGACGGAGCGA 60.750 63.158 0.00 0.00 0.00 4.93
554 579 1.720694 GGAGAAGAGGACGGAGCGAG 61.721 65.000 0.00 0.00 0.00 5.03
555 580 0.745128 GAGAAGAGGACGGAGCGAGA 60.745 60.000 0.00 0.00 0.00 4.04
556 581 0.746563 AGAAGAGGACGGAGCGAGAG 60.747 60.000 0.00 0.00 0.00 3.20
557 582 0.745128 GAAGAGGACGGAGCGAGAGA 60.745 60.000 0.00 0.00 0.00 3.10
558 583 0.746563 AAGAGGACGGAGCGAGAGAG 60.747 60.000 0.00 0.00 0.00 3.20
559 584 2.124487 AGGACGGAGCGAGAGAGG 60.124 66.667 0.00 0.00 0.00 3.69
560 585 2.124653 GGACGGAGCGAGAGAGGA 60.125 66.667 0.00 0.00 0.00 3.71
561 586 2.184167 GGACGGAGCGAGAGAGGAG 61.184 68.421 0.00 0.00 0.00 3.69
562 587 1.153329 GACGGAGCGAGAGAGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
563 588 1.153249 ACGGAGCGAGAGAGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
564 589 1.153249 CGGAGCGAGAGAGGAGAGT 60.153 63.158 0.00 0.00 0.00 3.24
565 590 0.105224 CGGAGCGAGAGAGGAGAGTA 59.895 60.000 0.00 0.00 0.00 2.59
566 591 1.473610 CGGAGCGAGAGAGGAGAGTAA 60.474 57.143 0.00 0.00 0.00 2.24
567 592 2.218603 GGAGCGAGAGAGGAGAGTAAG 58.781 57.143 0.00 0.00 0.00 2.34
568 593 2.420967 GGAGCGAGAGAGGAGAGTAAGT 60.421 54.545 0.00 0.00 0.00 2.24
569 594 2.612212 GAGCGAGAGAGGAGAGTAAGTG 59.388 54.545 0.00 0.00 0.00 3.16
570 595 2.237643 AGCGAGAGAGGAGAGTAAGTGA 59.762 50.000 0.00 0.00 0.00 3.41
571 596 2.612212 GCGAGAGAGGAGAGTAAGTGAG 59.388 54.545 0.00 0.00 0.00 3.51
572 597 3.869065 CGAGAGAGGAGAGTAAGTGAGT 58.131 50.000 0.00 0.00 0.00 3.41
573 598 4.258543 CGAGAGAGGAGAGTAAGTGAGTT 58.741 47.826 0.00 0.00 0.00 3.01
574 599 4.698304 CGAGAGAGGAGAGTAAGTGAGTTT 59.302 45.833 0.00 0.00 0.00 2.66
575 600 5.391523 CGAGAGAGGAGAGTAAGTGAGTTTG 60.392 48.000 0.00 0.00 0.00 2.93
576 601 4.770010 AGAGAGGAGAGTAAGTGAGTTTGG 59.230 45.833 0.00 0.00 0.00 3.28
577 602 3.835395 AGAGGAGAGTAAGTGAGTTTGGG 59.165 47.826 0.00 0.00 0.00 4.12
578 603 3.579151 GAGGAGAGTAAGTGAGTTTGGGT 59.421 47.826 0.00 0.00 0.00 4.51
579 604 3.974642 AGGAGAGTAAGTGAGTTTGGGTT 59.025 43.478 0.00 0.00 0.00 4.11
580 605 4.040584 AGGAGAGTAAGTGAGTTTGGGTTC 59.959 45.833 0.00 0.00 0.00 3.62
602 627 4.241555 CGAGGAGCCGGATTGGGG 62.242 72.222 5.05 0.00 38.63 4.96
622 647 2.026522 TTTTTCTTGTGACGGCCCG 58.973 52.632 0.00 0.00 0.00 6.13
626 651 1.180456 TTCTTGTGACGGCCCGAGTA 61.180 55.000 11.71 0.00 0.00 2.59
638 663 4.992951 ACGGCCCGAGTATCATAAATTTAC 59.007 41.667 11.71 0.00 33.17 2.01
743 769 0.321653 ACCACAAATCGCTGGAGACC 60.322 55.000 0.00 0.00 0.00 3.85
753 779 1.977544 CTGGAGACCGGACCGAACT 60.978 63.158 17.49 13.85 29.82 3.01
766 792 1.574702 CCGAACTTTCTGGAACGGCC 61.575 60.000 0.00 0.00 34.36 6.13
767 793 1.866925 GAACTTTCTGGAACGGCCG 59.133 57.895 26.86 26.86 40.66 6.13
768 794 0.601841 GAACTTTCTGGAACGGCCGA 60.602 55.000 35.90 8.44 40.66 5.54
769 795 0.036306 AACTTTCTGGAACGGCCGAT 59.964 50.000 35.90 23.25 40.66 4.18
770 796 0.673644 ACTTTCTGGAACGGCCGATG 60.674 55.000 35.90 16.02 40.66 3.84
771 797 0.673644 CTTTCTGGAACGGCCGATGT 60.674 55.000 35.90 16.98 40.66 3.06
772 798 0.672401 TTTCTGGAACGGCCGATGTC 60.672 55.000 35.90 24.17 40.66 3.06
773 799 2.511600 CTGGAACGGCCGATGTCC 60.512 66.667 35.90 31.31 40.66 4.02
774 800 4.090588 TGGAACGGCCGATGTCCC 62.091 66.667 35.90 22.99 40.66 4.46
783 809 4.899239 CGATGTCCCGGAGCCAGC 62.899 72.222 0.73 0.00 0.00 4.85
784 810 4.899239 GATGTCCCGGAGCCAGCG 62.899 72.222 0.73 0.00 0.00 5.18
812 838 3.295304 CTGACACGACCCCGCATCA 62.295 63.158 0.00 0.00 39.95 3.07
955 981 3.690139 GGACGGAAAAGAGGAGAATTTCC 59.310 47.826 6.47 6.47 45.52 3.13
1600 2107 3.161557 CCATCCCCCGATTCCTCC 58.838 66.667 0.00 0.00 0.00 4.30
1715 2222 3.213402 CCGAGGAGGAGGAGACGC 61.213 72.222 0.00 0.00 45.00 5.19
1755 2262 0.108138 CTCAAGAAGGTACTGGGGCG 60.108 60.000 0.00 0.00 40.86 6.13
1758 2265 1.125711 AAGAAGGTACTGGGGCGTGT 61.126 55.000 0.00 0.00 40.86 4.49
1792 2300 0.800300 AAAATTGGGTATTGCGCGCG 60.800 50.000 28.44 28.44 0.00 6.86
1817 2325 1.306141 TCGGGCTGGAGTTCCTGAT 60.306 57.895 9.01 0.00 37.15 2.90
1864 2372 1.950484 GCAGATTGTGACGGATTGGGT 60.950 52.381 0.00 0.00 0.00 4.51
1881 2389 1.668151 GTCAAGACGGTGGCCTGTC 60.668 63.158 3.32 9.82 35.33 3.51
1892 2400 2.363172 GGCCTGTCAGGAGAGGGTC 61.363 68.421 23.77 2.39 41.79 4.46
1940 2448 4.222145 GTCCTCACCTATGGTTCTTACACA 59.778 45.833 0.00 0.00 31.02 3.72
2005 2513 4.880120 TGGTCATGATTTCTCTGAATGCTC 59.120 41.667 0.00 0.00 0.00 4.26
2038 2546 3.418047 CGTATTGGTTGGATTATCCCCC 58.582 50.000 8.98 9.21 35.03 5.40
2052 2560 6.210185 GGATTATCCCCCATTTCAAGATTCTG 59.790 42.308 0.00 0.00 0.00 3.02
2067 2575 8.498054 TCAAGATTCTGTAGAATTCCATGTTC 57.502 34.615 8.41 0.00 44.14 3.18
2070 2578 7.782049 AGATTCTGTAGAATTCCATGTTCGTA 58.218 34.615 8.41 0.00 44.14 3.43
2094 2602 9.338622 GTAGTAGTAATTTGGTTGGATTATGCT 57.661 33.333 0.00 0.00 0.00 3.79
2153 2666 6.906795 AATTGGTTGGATTATCCCCAATTT 57.093 33.333 27.19 17.86 46.84 1.82
2154 2667 5.948742 TTGGTTGGATTATCCCCAATTTC 57.051 39.130 15.07 0.00 44.53 2.17
2155 2668 4.952845 TGGTTGGATTATCCCCAATTTCA 58.047 39.130 8.98 0.00 44.53 2.69
2157 2670 5.208121 GGTTGGATTATCCCCAATTTCAGA 58.792 41.667 8.98 0.00 44.53 3.27
2161 2674 7.601705 TGGATTATCCCCAATTTCAGATTTC 57.398 36.000 8.98 0.00 35.03 2.17
2162 2675 6.554605 TGGATTATCCCCAATTTCAGATTTCC 59.445 38.462 8.98 0.00 35.03 3.13
2163 2676 6.784473 GGATTATCCCCAATTTCAGATTTCCT 59.216 38.462 0.00 0.00 0.00 3.36
2193 2712 7.624360 TTTCATGTTTGTAGTAATGCCTAGG 57.376 36.000 3.67 3.67 0.00 3.02
2199 2718 7.909518 TGTTTGTAGTAATGCCTAGGTTTAGA 58.090 34.615 11.31 0.00 0.00 2.10
2201 2721 7.966339 TTGTAGTAATGCCTAGGTTTAGAGA 57.034 36.000 11.31 0.00 0.00 3.10
2224 2744 5.559148 TTCACACCTTTTGGCCAATTAAT 57.441 34.783 21.26 2.73 45.59 1.40
2265 2785 8.682936 AGGAATGTAGATTGCAAACCTATTAG 57.317 34.615 1.71 0.00 32.46 1.73
2266 2786 7.229506 AGGAATGTAGATTGCAAACCTATTAGC 59.770 37.037 1.71 0.00 32.46 3.09
2311 2834 8.823220 AAAATGGTCTGTTATTTATAGTGCCT 57.177 30.769 0.00 0.00 0.00 4.75
2313 2836 6.553953 TGGTCTGTTATTTATAGTGCCTGA 57.446 37.500 0.00 0.00 0.00 3.86
2328 2851 1.544314 GCCTGACCTTATGCCCAGATC 60.544 57.143 0.00 0.00 0.00 2.75
2348 2871 5.757320 AGATCATTCTCTGAGCGTTAATTGG 59.243 40.000 0.00 0.00 45.11 3.16
2413 2936 3.882888 CCTTCTGTTTGTTCTAGTTGCCA 59.117 43.478 0.00 0.00 0.00 4.92
2451 2974 1.614903 CAAGTGCCTTGGCTGATCAAA 59.385 47.619 13.18 0.00 37.77 2.69
2527 3050 0.035820 TGGTCCCTGTATCGCAAACC 60.036 55.000 0.00 0.00 0.00 3.27
2537 3060 1.024579 ATCGCAAACCTGCCGGTAAG 61.025 55.000 1.90 0.55 46.56 2.34
2544 3067 0.743097 ACCTGCCGGTAAGTATCGTC 59.257 55.000 1.90 0.00 43.29 4.20
2556 3079 2.322161 AGTATCGTCGTTTGTGTTCCG 58.678 47.619 0.00 0.00 0.00 4.30
2577 3100 3.214328 GTCTTTCTCCACCTTTGCTTCA 58.786 45.455 0.00 0.00 0.00 3.02
2578 3101 3.823304 GTCTTTCTCCACCTTTGCTTCAT 59.177 43.478 0.00 0.00 0.00 2.57
2579 3102 4.074970 TCTTTCTCCACCTTTGCTTCATC 58.925 43.478 0.00 0.00 0.00 2.92
2613 3136 3.119602 GCATGTCATGTCAATCTTGCAGT 60.120 43.478 14.26 0.00 33.34 4.40
2883 3414 2.037251 GGAGTGAACCTGTTAGTGAGCA 59.963 50.000 0.00 0.00 0.00 4.26
2884 3415 3.321497 GAGTGAACCTGTTAGTGAGCAG 58.679 50.000 0.00 0.00 0.00 4.24
2885 3416 1.801178 GTGAACCTGTTAGTGAGCAGC 59.199 52.381 0.00 0.00 0.00 5.25
2886 3417 1.694150 TGAACCTGTTAGTGAGCAGCT 59.306 47.619 0.00 0.00 0.00 4.24
2887 3418 2.104792 TGAACCTGTTAGTGAGCAGCTT 59.895 45.455 0.00 0.00 0.00 3.74
2888 3419 3.323691 TGAACCTGTTAGTGAGCAGCTTA 59.676 43.478 0.00 0.00 0.00 3.09
2889 3420 3.320673 ACCTGTTAGTGAGCAGCTTAC 57.679 47.619 9.33 9.33 0.00 2.34
2890 3421 2.028020 ACCTGTTAGTGAGCAGCTTACC 60.028 50.000 13.57 0.00 0.00 2.85
2905 3436 5.120830 GCAGCTTACCATTAGGACGATATTG 59.879 44.000 0.00 0.00 38.69 1.90
2906 3437 6.223852 CAGCTTACCATTAGGACGATATTGT 58.776 40.000 0.00 0.00 38.69 2.71
2907 3438 6.706270 CAGCTTACCATTAGGACGATATTGTT 59.294 38.462 0.00 0.00 38.69 2.83
2908 3439 6.929606 AGCTTACCATTAGGACGATATTGTTC 59.070 38.462 0.00 0.00 38.69 3.18
2909 3440 6.929606 GCTTACCATTAGGACGATATTGTTCT 59.070 38.462 9.01 9.01 38.69 3.01
2910 3441 8.086522 GCTTACCATTAGGACGATATTGTTCTA 58.913 37.037 6.99 6.99 38.69 2.10
2993 3524 9.920946 TTATAATCTCTTTAAATCTGGCACCTT 57.079 29.630 0.00 0.00 0.00 3.50
3091 3622 6.989759 TGAAGTTCTAGAAGTGCACAAATACA 59.010 34.615 21.04 0.00 0.00 2.29
3120 3651 0.620556 TTCCTTGCACTCTCCATCCC 59.379 55.000 0.00 0.00 0.00 3.85
3124 3655 0.842030 TTGCACTCTCCATCCCCAGT 60.842 55.000 0.00 0.00 0.00 4.00
3179 3710 2.489971 CCGCACTGTGGAAAAAGACTA 58.510 47.619 10.21 0.00 34.74 2.59
3180 3711 3.074412 CCGCACTGTGGAAAAAGACTAT 58.926 45.455 10.21 0.00 34.74 2.12
3314 3845 1.830279 ACACATGTTGCTCATCCTGG 58.170 50.000 0.00 0.00 34.09 4.45
3326 3857 2.686915 CTCATCCTGGGCATCAAACTTC 59.313 50.000 0.00 0.00 0.00 3.01
3329 3860 1.988107 TCCTGGGCATCAAACTTCTCT 59.012 47.619 0.00 0.00 0.00 3.10
3370 3901 5.436175 TCACTTCTTTTCCTTGACATCACA 58.564 37.500 0.00 0.00 0.00 3.58
3374 3905 2.286365 TTTCCTTGACATCACACCCC 57.714 50.000 0.00 0.00 0.00 4.95
3375 3906 1.144691 TTCCTTGACATCACACCCCA 58.855 50.000 0.00 0.00 0.00 4.96
3376 3907 0.400213 TCCTTGACATCACACCCCAC 59.600 55.000 0.00 0.00 0.00 4.61
3428 3960 5.097742 TGGGACGTCTAATGTCATTTGAT 57.902 39.130 16.46 0.00 35.87 2.57
3529 4061 6.753897 AACATTGATGCTCGAAAAAGAAAC 57.246 33.333 0.00 0.00 0.00 2.78
3546 4078 0.470766 AACGCCCTGTACTTGGTTCA 59.529 50.000 0.00 0.00 0.00 3.18
3585 4117 3.129813 TGTGCATGATCAAGCCAATTCTC 59.870 43.478 19.47 3.37 0.00 2.87
3609 4141 1.821136 AGGCTTATCACAGCAAAAGGC 59.179 47.619 0.00 0.00 42.10 4.35
3639 4171 2.556534 GCTTCAAGCCATGCTAACTG 57.443 50.000 0.00 0.00 38.25 3.16
3641 4173 2.440409 CTTCAAGCCATGCTAACTGGT 58.560 47.619 0.00 0.00 38.25 4.00
3700 4232 0.466543 TGGTCCACGTGTAACAAGCT 59.533 50.000 15.65 0.00 35.74 3.74
3719 4251 5.520748 AGCTCTTCCCCTTTGAATCTTAA 57.479 39.130 0.00 0.00 0.00 1.85
3724 4256 6.663734 TCTTCCCCTTTGAATCTTAAGGATC 58.336 40.000 13.68 2.27 42.90 3.36
3768 4300 8.840321 AGATAGTGACCAATATTATTGTTGTGC 58.160 33.333 13.87 2.75 0.00 4.57
3772 4307 7.176515 AGTGACCAATATTATTGTTGTGCTTCA 59.823 33.333 13.87 4.04 0.00 3.02
3826 4361 2.633481 CCTAGGAATAGGGGCACAGTAC 59.367 54.545 1.05 0.00 33.60 2.73
3903 4438 3.243068 GCCTAAAAGCCACCACATATTCG 60.243 47.826 0.00 0.00 0.00 3.34
3961 4496 7.329226 ACATTTGCAAAGAATTTACCTTGATCG 59.671 33.333 18.19 0.00 35.03 3.69
4125 4666 4.916249 GTCTCACAGACGTGGTACTAAAAG 59.084 45.833 0.00 0.00 43.79 2.27
4147 4688 5.446860 AGTGGAAGGTCTATATTCTGACGA 58.553 41.667 0.00 0.00 34.31 4.20
4199 4740 3.478509 TCTAGTCCTCAGTATCTTCGGC 58.521 50.000 0.00 0.00 0.00 5.54
4287 4828 1.207329 GCCGGATCAAGAGGTTACAGT 59.793 52.381 5.05 0.00 0.00 3.55
4356 4897 5.708736 ACATAATTGTACATGAGGACCCA 57.291 39.130 0.00 0.00 33.16 4.51
4386 4927 6.876257 AGTCATGTTTGAATCTACACTTCTCC 59.124 38.462 0.00 0.00 32.48 3.71
4389 4930 5.470368 TGTTTGAATCTACACTTCTCCTCG 58.530 41.667 0.00 0.00 0.00 4.63
4432 4973 6.767902 TGTATTCATCTATTTCTGCACTTCCC 59.232 38.462 0.00 0.00 0.00 3.97
4503 5047 6.148948 CGTGCTCTTGTTTCCATTGATTTAA 58.851 36.000 0.00 0.00 0.00 1.52
4526 5070 3.752747 TGTGACTGTGGTATTGCTCATTG 59.247 43.478 0.00 0.00 0.00 2.82
4530 5074 5.411361 TGACTGTGGTATTGCTCATTGTTAC 59.589 40.000 0.00 0.00 0.00 2.50
4561 5105 9.950680 ACACAAGAGTACTTCAAATTATTGTTG 57.049 29.630 0.00 0.00 37.79 3.33
4672 5216 4.160252 GGGACTTCATTGCCATGTATGTTT 59.840 41.667 0.00 0.00 0.00 2.83
4674 5218 5.577945 GGACTTCATTGCCATGTATGTTTTG 59.422 40.000 0.00 0.00 0.00 2.44
4695 5240 3.316029 TGTAATATGTGCTGCTGATTGCC 59.684 43.478 0.00 0.00 42.00 4.52
4702 5247 1.580845 GCTGCTGATTGCCGTTCAGT 61.581 55.000 8.78 0.00 42.12 3.41
4840 5385 0.625316 ATGCCACTGCCAATGGTCTA 59.375 50.000 0.00 0.00 39.63 2.59
5105 5650 2.234300 TCGTCCTGCTTTTCGAAGTT 57.766 45.000 0.00 0.00 0.00 2.66
5143 5688 8.430063 GTGAAATGCACAGATTTTGTTATTCTG 58.570 33.333 0.00 0.00 46.91 3.02
5144 5689 8.358895 TGAAATGCACAGATTTTGTTATTCTGA 58.641 29.630 6.19 0.00 39.36 3.27
5145 5690 8.752766 AAATGCACAGATTTTGTTATTCTGAG 57.247 30.769 6.19 0.00 39.36 3.35
5215 5760 9.944663 TTATTGAAACAAAGTGTACTAAAGCTG 57.055 29.630 0.00 0.00 0.00 4.24
5217 5762 8.495361 TTGAAACAAAGTGTACTAAAGCTGTA 57.505 30.769 0.00 0.00 0.00 2.74
5218 5763 8.495361 TGAAACAAAGTGTACTAAAGCTGTAA 57.505 30.769 0.00 0.00 0.00 2.41
5219 5764 8.392612 TGAAACAAAGTGTACTAAAGCTGTAAC 58.607 33.333 0.00 0.00 0.00 2.50
5220 5765 7.852971 AACAAAGTGTACTAAAGCTGTAACA 57.147 32.000 0.00 0.00 0.00 2.41
5222 5767 7.916552 ACAAAGTGTACTAAAGCTGTAACAAG 58.083 34.615 0.00 0.00 0.00 3.16
5225 5770 9.603921 AAAGTGTACTAAAGCTGTAACAAGTAA 57.396 29.630 0.00 0.00 0.00 2.24
5235 5780 7.807977 AGCTGTAACAAGTAATATGGATTGG 57.192 36.000 0.00 0.00 0.00 3.16
5236 5781 7.573710 AGCTGTAACAAGTAATATGGATTGGA 58.426 34.615 0.00 0.00 0.00 3.53
5237 5782 7.716998 AGCTGTAACAAGTAATATGGATTGGAG 59.283 37.037 0.00 0.00 0.00 3.86
5238 5783 7.041098 GCTGTAACAAGTAATATGGATTGGAGG 60.041 40.741 0.00 0.00 0.00 4.30
5239 5784 7.287061 TGTAACAAGTAATATGGATTGGAGGG 58.713 38.462 0.00 0.00 0.00 4.30
5240 5785 6.590656 AACAAGTAATATGGATTGGAGGGA 57.409 37.500 0.00 0.00 0.00 4.20
5241 5786 6.192970 ACAAGTAATATGGATTGGAGGGAG 57.807 41.667 0.00 0.00 0.00 4.30
5242 5787 5.672194 ACAAGTAATATGGATTGGAGGGAGT 59.328 40.000 0.00 0.00 0.00 3.85
5243 5788 6.849697 ACAAGTAATATGGATTGGAGGGAGTA 59.150 38.462 0.00 0.00 0.00 2.59
5244 5789 7.016661 ACAAGTAATATGGATTGGAGGGAGTAG 59.983 40.741 0.00 0.00 0.00 2.57
5245 5790 4.917906 AATATGGATTGGAGGGAGTAGC 57.082 45.455 0.00 0.00 0.00 3.58
5246 5791 2.503869 ATGGATTGGAGGGAGTAGCT 57.496 50.000 0.00 0.00 0.00 3.32
5247 5792 2.270434 TGGATTGGAGGGAGTAGCTT 57.730 50.000 0.00 0.00 0.00 3.74
5248 5793 2.562296 TGGATTGGAGGGAGTAGCTTT 58.438 47.619 0.00 0.00 0.00 3.51
5249 5794 2.505819 TGGATTGGAGGGAGTAGCTTTC 59.494 50.000 0.00 0.00 0.00 2.62
5250 5795 2.158740 GGATTGGAGGGAGTAGCTTTCC 60.159 54.545 8.14 8.14 0.00 3.13
5251 5796 2.344093 TTGGAGGGAGTAGCTTTCCT 57.656 50.000 14.51 0.98 35.01 3.36
5252 5797 2.344093 TGGAGGGAGTAGCTTTCCTT 57.656 50.000 14.51 8.68 35.01 3.36
5253 5798 2.632537 TGGAGGGAGTAGCTTTCCTTT 58.367 47.619 14.51 5.83 35.01 3.11
5254 5799 2.986728 TGGAGGGAGTAGCTTTCCTTTT 59.013 45.455 14.51 3.85 35.01 2.27
5255 5800 3.397955 TGGAGGGAGTAGCTTTCCTTTTT 59.602 43.478 14.51 1.90 35.01 1.94
5308 5853 3.008375 AGCTGAGATTGGTCAACTTGCTA 59.992 43.478 0.00 0.00 0.00 3.49
5313 5858 4.338879 AGATTGGTCAACTTGCTAATGCT 58.661 39.130 0.00 0.00 40.48 3.79
5345 5890 5.819991 ACCAACACATTCTGACATTCCTAT 58.180 37.500 0.00 0.00 0.00 2.57
5372 5917 6.040054 CCACAAATTCAGATCTTCCATGCATA 59.960 38.462 0.00 0.00 0.00 3.14
5440 5985 6.093633 GGACAACTAATCCACTGTTTCATACC 59.906 42.308 0.00 0.00 36.15 2.73
5468 6013 3.119352 GGTTTCTGCATCTCAACCATTCC 60.119 47.826 10.20 0.00 38.89 3.01
5512 6061 3.833070 AGACACCTATCTCGTGTTCCTTT 59.167 43.478 0.00 0.00 44.34 3.11
5597 6146 9.424319 TGATACTCATCTGAAGTTTTAGTTCAC 57.576 33.333 0.00 0.00 32.96 3.18
5615 6164 7.081526 AGTTCACAATATCATTTCAGTGAGC 57.918 36.000 0.00 0.00 37.32 4.26
5626 6175 6.545508 TCATTTCAGTGAGCATACATTTTCG 58.454 36.000 0.00 0.00 0.00 3.46
5718 6267 4.838904 TCTCTAGTACTAGACCAGTGCA 57.161 45.455 25.58 6.08 41.96 4.57
5798 6347 0.400594 GTTTGGCACAGGACCTAGGT 59.599 55.000 16.26 16.26 42.39 3.08
5914 6463 4.259356 TCTGAAGAACTGCATGATTGGAG 58.741 43.478 0.00 0.00 46.03 3.86
6125 6682 4.564372 CACAGGAAGTTGATCATACAGTCG 59.436 45.833 0.00 0.00 0.00 4.18
6185 6742 8.007153 TCCCTCAATCAGATACTCTTCTTGATA 58.993 37.037 0.00 0.00 29.39 2.15
6487 7802 6.064060 TCATGTCTGTTGGTTTCTTCTCATT 58.936 36.000 0.00 0.00 0.00 2.57
6551 7868 3.531538 TCTTTTATTAGCTCCAGGTGCG 58.468 45.455 7.87 0.00 35.28 5.34
6560 7877 0.596083 CTCCAGGTGCGCTAAGATCG 60.596 60.000 9.73 0.00 0.00 3.69
6575 7892 3.045601 AGATCGTGAAACTGACTTGGG 57.954 47.619 0.00 0.00 31.75 4.12
6610 7927 4.334443 GTTATTCAAGCGCATGTGTAGTG 58.666 43.478 11.47 4.08 0.00 2.74
6611 7928 1.155889 TTCAAGCGCATGTGTAGTGG 58.844 50.000 11.47 0.00 0.00 4.00
6613 7930 0.443869 CAAGCGCATGTGTAGTGGTC 59.556 55.000 11.47 0.00 0.00 4.02
6614 7931 0.034756 AAGCGCATGTGTAGTGGTCA 59.965 50.000 11.47 0.00 0.00 4.02
6615 7932 0.390340 AGCGCATGTGTAGTGGTCAG 60.390 55.000 11.47 0.00 0.00 3.51
6616 7933 0.670546 GCGCATGTGTAGTGGTCAGT 60.671 55.000 0.30 0.00 0.00 3.41
6618 7935 2.738643 GCGCATGTGTAGTGGTCAGTAT 60.739 50.000 0.30 0.00 0.00 2.12
6640 7959 2.654749 TCGGCATAGTGTCTGACAAG 57.345 50.000 12.81 4.43 0.00 3.16
6644 7963 3.369147 CGGCATAGTGTCTGACAAGAAAG 59.631 47.826 12.81 3.39 33.05 2.62
6800 8148 0.039618 TGAAGATGGGGAGGCAAACC 59.960 55.000 0.00 0.00 0.00 3.27
6863 8218 2.886523 TGGTTTCTGCTGTGAATTCTGG 59.113 45.455 7.05 0.00 0.00 3.86
6893 8249 2.888834 GTGCAAATCACCCAAGTTGT 57.111 45.000 1.45 0.00 39.79 3.32
6943 8313 4.722194 AGTATGTGCTGTTACATTTTGCG 58.278 39.130 0.00 0.00 41.31 4.85
6973 8343 1.341080 CCCTTGCCACTGAACCATTT 58.659 50.000 0.00 0.00 0.00 2.32
7000 8370 1.890876 TTGCGCTAACACTGAACCAT 58.109 45.000 9.73 0.00 0.00 3.55
7002 8372 1.804151 TGCGCTAACACTGAACCATTC 59.196 47.619 9.73 0.00 0.00 2.67
7007 8377 4.911610 CGCTAACACTGAACCATTCTTTTG 59.088 41.667 0.00 0.00 0.00 2.44
7013 8477 5.531287 ACACTGAACCATTCTTTTGTACTCC 59.469 40.000 0.00 0.00 0.00 3.85
7015 8479 4.069304 TGAACCATTCTTTTGTACTCCGG 58.931 43.478 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.109359 AGCTAAAATGACAGTAGGACATGTC 58.891 40.000 17.91 17.91 44.88 3.06
5 6 6.054860 AGCTAAAATGACAGTAGGACATGT 57.945 37.500 0.00 0.00 0.00 3.21
6 7 6.676456 GCAAGCTAAAATGACAGTAGGACATG 60.676 42.308 0.00 0.00 0.00 3.21
7 8 5.355350 GCAAGCTAAAATGACAGTAGGACAT 59.645 40.000 0.00 0.00 0.00 3.06
8 9 4.695455 GCAAGCTAAAATGACAGTAGGACA 59.305 41.667 0.00 0.00 0.00 4.02
14 15 4.501400 GGTTTGGCAAGCTAAAATGACAGT 60.501 41.667 13.83 0.00 35.63 3.55
18 19 2.887783 TCGGTTTGGCAAGCTAAAATGA 59.112 40.909 13.83 4.12 0.00 2.57
61 62 1.344438 ACTTGTCATTGAGCAGTCGGA 59.656 47.619 0.00 0.00 0.00 4.55
71 72 2.805671 TGCCGTCTACAACTTGTCATTG 59.194 45.455 0.00 0.00 0.00 2.82
76 77 1.226746 GCTTGCCGTCTACAACTTGT 58.773 50.000 0.00 0.00 0.00 3.16
122 147 2.202570 CGCTTGGGTCTACCGTCG 60.203 66.667 0.00 0.00 44.64 5.12
124 149 2.348888 CCTCGCTTGGGTCTACCGT 61.349 63.158 0.00 0.00 44.64 4.83
139 164 2.270527 GAGGACAAGCAGCCCCTC 59.729 66.667 5.35 5.35 38.47 4.30
156 181 1.493950 GATGCCGATGGAGCTTGACG 61.494 60.000 0.00 0.00 0.00 4.35
160 185 1.147824 CAGGATGCCGATGGAGCTT 59.852 57.895 0.00 0.00 0.00 3.74
205 230 1.376037 GCAAAGGGAGAGGGACACG 60.376 63.158 0.00 0.00 0.00 4.49
211 236 1.378250 CAGCAGGCAAAGGGAGAGG 60.378 63.158 0.00 0.00 0.00 3.69
225 250 2.031012 CCGTCACAAGAGGCAGCA 59.969 61.111 0.00 0.00 0.00 4.41
258 283 3.501396 CAATGGGTGCTAGTGCGG 58.499 61.111 0.00 0.00 43.34 5.69
290 315 3.952628 CTTCCCCGTTCGGCAGGTC 62.953 68.421 5.66 0.00 0.00 3.85
300 325 2.685380 CTCTGCCCTCTTCCCCGT 60.685 66.667 0.00 0.00 0.00 5.28
301 326 4.168291 GCTCTGCCCTCTTCCCCG 62.168 72.222 0.00 0.00 0.00 5.73
302 327 4.168291 CGCTCTGCCCTCTTCCCC 62.168 72.222 0.00 0.00 0.00 4.81
305 330 2.185608 GTCCGCTCTGCCCTCTTC 59.814 66.667 0.00 0.00 0.00 2.87
307 332 3.073735 CAGTCCGCTCTGCCCTCT 61.074 66.667 0.00 0.00 0.00 3.69
386 411 4.193334 TCCGGATCTGCAGCGTCG 62.193 66.667 9.47 11.72 0.00 5.12
387 412 2.279120 CTCCGGATCTGCAGCGTC 60.279 66.667 9.47 9.58 0.00 5.19
388 413 4.521062 GCTCCGGATCTGCAGCGT 62.521 66.667 9.47 0.00 0.00 5.07
389 414 4.218578 AGCTCCGGATCTGCAGCG 62.219 66.667 11.85 7.07 36.95 5.18
390 415 2.588314 CAGCTCCGGATCTGCAGC 60.588 66.667 21.50 9.64 0.00 5.25
394 419 4.598894 CGGGCAGCTCCGGATCTG 62.599 72.222 27.30 27.30 45.78 2.90
401 426 3.785859 TGGACATCGGGCAGCTCC 61.786 66.667 0.00 0.00 0.00 4.70
402 427 2.512515 GTGGACATCGGGCAGCTC 60.513 66.667 0.00 0.00 0.00 4.09
403 428 4.101448 GGTGGACATCGGGCAGCT 62.101 66.667 0.00 0.00 0.00 4.24
404 429 3.628646 AAGGTGGACATCGGGCAGC 62.629 63.158 0.00 0.00 0.00 5.25
405 430 1.746615 CAAGGTGGACATCGGGCAG 60.747 63.158 0.00 0.00 0.00 4.85
406 431 2.350895 CAAGGTGGACATCGGGCA 59.649 61.111 0.00 0.00 0.00 5.36
407 432 2.438434 CCAAGGTGGACATCGGGC 60.438 66.667 0.00 0.00 40.96 6.13
408 433 3.399046 TCCAAGGTGGACATCGGG 58.601 61.111 0.00 0.00 42.67 5.14
415 440 3.319198 GGAGCGGTCCAAGGTGGA 61.319 66.667 28.27 0.00 45.98 4.02
423 448 2.044946 ATTGCCTTGGAGCGGTCC 60.045 61.111 26.70 26.70 44.24 4.46
424 449 3.056313 GCATTGCCTTGGAGCGGTC 62.056 63.158 5.93 5.93 34.65 4.79
425 450 3.064324 GCATTGCCTTGGAGCGGT 61.064 61.111 0.00 0.00 34.65 5.68
426 451 4.183686 CGCATTGCCTTGGAGCGG 62.184 66.667 2.41 0.00 44.20 5.52
428 453 2.751436 TCCGCATTGCCTTGGAGC 60.751 61.111 2.41 0.00 0.00 4.70
429 454 2.117156 CCTCCGCATTGCCTTGGAG 61.117 63.158 18.83 18.83 46.10 3.86
430 455 2.045045 CCTCCGCATTGCCTTGGA 60.045 61.111 2.41 3.38 0.00 3.53
431 456 3.142838 CCCTCCGCATTGCCTTGG 61.143 66.667 2.41 0.00 0.00 3.61
432 457 2.361610 ACCCTCCGCATTGCCTTG 60.362 61.111 2.41 0.00 0.00 3.61
433 458 2.044946 GACCCTCCGCATTGCCTT 60.045 61.111 2.41 0.00 0.00 4.35
434 459 3.329889 TGACCCTCCGCATTGCCT 61.330 61.111 2.41 0.00 0.00 4.75
435 460 2.825836 CTGACCCTCCGCATTGCC 60.826 66.667 2.41 0.00 0.00 4.52
436 461 3.512516 GCTGACCCTCCGCATTGC 61.513 66.667 0.00 0.00 0.00 3.56
437 462 1.817099 GAGCTGACCCTCCGCATTG 60.817 63.158 0.00 0.00 0.00 2.82
438 463 2.586792 GAGCTGACCCTCCGCATT 59.413 61.111 0.00 0.00 0.00 3.56
439 464 3.474570 GGAGCTGACCCTCCGCAT 61.475 66.667 0.00 0.00 41.79 4.73
444 469 2.766400 CGACGAGGAGCTGACCCTC 61.766 68.421 9.45 9.45 45.16 4.30
445 470 2.559922 ATCGACGAGGAGCTGACCCT 62.560 60.000 3.01 0.00 36.57 4.34
446 471 2.122167 ATCGACGAGGAGCTGACCC 61.122 63.158 3.01 0.00 0.00 4.46
447 472 1.064946 CATCGACGAGGAGCTGACC 59.935 63.158 2.79 0.00 0.00 4.02
448 473 0.248296 GACATCGACGAGGAGCTGAC 60.248 60.000 17.43 0.00 0.00 3.51
449 474 0.676782 TGACATCGACGAGGAGCTGA 60.677 55.000 17.43 0.00 0.00 4.26
450 475 0.171231 TTGACATCGACGAGGAGCTG 59.829 55.000 17.43 5.13 0.00 4.24
451 476 0.171455 GTTGACATCGACGAGGAGCT 59.829 55.000 17.43 0.00 0.00 4.09
452 477 2.654939 GTTGACATCGACGAGGAGC 58.345 57.895 17.43 8.23 0.00 4.70
459 484 0.438830 GCTCCAACGTTGACATCGAC 59.561 55.000 29.35 7.63 0.00 4.20
460 485 0.317160 AGCTCCAACGTTGACATCGA 59.683 50.000 29.35 15.81 0.00 3.59
461 486 1.920574 CTAGCTCCAACGTTGACATCG 59.079 52.381 29.35 12.24 0.00 3.84
462 487 3.232213 TCTAGCTCCAACGTTGACATC 57.768 47.619 29.35 14.37 0.00 3.06
463 488 3.678056 TTCTAGCTCCAACGTTGACAT 57.322 42.857 29.35 13.99 0.00 3.06
464 489 3.325870 CATTCTAGCTCCAACGTTGACA 58.674 45.455 29.35 14.10 0.00 3.58
465 490 2.673368 CCATTCTAGCTCCAACGTTGAC 59.327 50.000 29.35 17.30 0.00 3.18
466 491 2.301870 ACCATTCTAGCTCCAACGTTGA 59.698 45.455 29.35 14.09 0.00 3.18
467 492 2.699954 ACCATTCTAGCTCCAACGTTG 58.300 47.619 21.47 21.47 0.00 4.10
468 493 3.074412 CAACCATTCTAGCTCCAACGTT 58.926 45.455 0.00 0.00 0.00 3.99
469 494 2.699954 CAACCATTCTAGCTCCAACGT 58.300 47.619 0.00 0.00 0.00 3.99
470 495 1.398390 GCAACCATTCTAGCTCCAACG 59.602 52.381 0.00 0.00 0.00 4.10
471 496 1.745653 GGCAACCATTCTAGCTCCAAC 59.254 52.381 0.00 0.00 0.00 3.77
472 497 1.678728 CGGCAACCATTCTAGCTCCAA 60.679 52.381 0.00 0.00 0.00 3.53
473 498 0.107703 CGGCAACCATTCTAGCTCCA 60.108 55.000 0.00 0.00 0.00 3.86
474 499 0.815615 CCGGCAACCATTCTAGCTCC 60.816 60.000 0.00 0.00 0.00 4.70
475 500 0.178068 TCCGGCAACCATTCTAGCTC 59.822 55.000 0.00 0.00 0.00 4.09
476 501 0.179000 CTCCGGCAACCATTCTAGCT 59.821 55.000 0.00 0.00 0.00 3.32
477 502 1.440145 GCTCCGGCAACCATTCTAGC 61.440 60.000 0.00 0.00 38.54 3.42
478 503 0.179000 AGCTCCGGCAACCATTCTAG 59.821 55.000 0.00 0.00 41.70 2.43
479 504 0.178068 GAGCTCCGGCAACCATTCTA 59.822 55.000 0.87 0.00 41.70 2.10
480 505 1.078143 GAGCTCCGGCAACCATTCT 60.078 57.895 0.87 0.00 41.70 2.40
481 506 2.464459 CGAGCTCCGGCAACCATTC 61.464 63.158 8.47 0.00 41.70 2.67
482 507 2.436646 CGAGCTCCGGCAACCATT 60.437 61.111 8.47 0.00 41.70 3.16
483 508 3.390521 TCGAGCTCCGGCAACCAT 61.391 61.111 8.47 0.00 41.70 3.55
484 509 4.373116 GTCGAGCTCCGGCAACCA 62.373 66.667 8.47 0.00 43.50 3.67
489 514 3.567797 GCAATGTCGAGCTCCGGC 61.568 66.667 8.47 5.67 44.47 6.13
490 515 1.493950 GATGCAATGTCGAGCTCCGG 61.494 60.000 8.47 0.00 39.14 5.14
491 516 0.807275 TGATGCAATGTCGAGCTCCG 60.807 55.000 8.47 3.57 40.25 4.63
492 517 0.935898 CTGATGCAATGTCGAGCTCC 59.064 55.000 8.47 0.00 0.00 4.70
493 518 1.931906 TCTGATGCAATGTCGAGCTC 58.068 50.000 2.73 2.73 0.00 4.09
494 519 2.612672 CAATCTGATGCAATGTCGAGCT 59.387 45.455 0.00 0.00 0.00 4.09
495 520 2.286831 CCAATCTGATGCAATGTCGAGC 60.287 50.000 0.00 0.00 0.00 5.03
496 521 3.200483 TCCAATCTGATGCAATGTCGAG 58.800 45.455 0.00 0.00 0.00 4.04
497 522 3.264998 TCCAATCTGATGCAATGTCGA 57.735 42.857 0.00 0.00 0.00 4.20
498 523 3.363673 CGATCCAATCTGATGCAATGTCG 60.364 47.826 0.00 0.00 0.00 4.35
499 524 3.058432 CCGATCCAATCTGATGCAATGTC 60.058 47.826 0.00 0.00 0.00 3.06
500 525 2.882761 CCGATCCAATCTGATGCAATGT 59.117 45.455 0.00 0.00 0.00 2.71
501 526 3.143728 TCCGATCCAATCTGATGCAATG 58.856 45.455 0.00 0.00 0.00 2.82
502 527 3.497103 TCCGATCCAATCTGATGCAAT 57.503 42.857 0.00 0.00 0.00 3.56
503 528 3.280197 TTCCGATCCAATCTGATGCAA 57.720 42.857 0.00 0.00 0.00 4.08
504 529 3.405831 GATTCCGATCCAATCTGATGCA 58.594 45.455 0.00 0.00 0.00 3.96
505 530 2.414481 CGATTCCGATCCAATCTGATGC 59.586 50.000 9.35 0.00 38.22 3.91
506 531 3.917988 TCGATTCCGATCCAATCTGATG 58.082 45.455 9.35 0.00 40.30 3.07
507 532 4.281941 TCTTCGATTCCGATCCAATCTGAT 59.718 41.667 9.35 0.00 45.10 2.90
508 533 3.636764 TCTTCGATTCCGATCCAATCTGA 59.363 43.478 9.35 6.53 45.10 3.27
509 534 3.982475 TCTTCGATTCCGATCCAATCTG 58.018 45.455 9.35 4.90 45.10 2.90
510 535 3.006323 CCTCTTCGATTCCGATCCAATCT 59.994 47.826 9.35 0.00 45.10 2.40
511 536 3.321497 CCTCTTCGATTCCGATCCAATC 58.679 50.000 0.00 3.00 45.10 2.67
512 537 2.037772 CCCTCTTCGATTCCGATCCAAT 59.962 50.000 0.00 0.00 45.10 3.16
513 538 1.412710 CCCTCTTCGATTCCGATCCAA 59.587 52.381 0.00 0.00 45.10 3.53
514 539 1.040646 CCCTCTTCGATTCCGATCCA 58.959 55.000 0.00 0.00 45.10 3.41
515 540 0.318762 CCCCTCTTCGATTCCGATCC 59.681 60.000 0.00 0.00 45.10 3.36
516 541 0.318762 CCCCCTCTTCGATTCCGATC 59.681 60.000 0.00 0.00 45.10 3.69
517 542 2.442056 CCCCCTCTTCGATTCCGAT 58.558 57.895 0.00 0.00 45.10 4.18
518 543 3.950232 CCCCCTCTTCGATTCCGA 58.050 61.111 0.00 0.00 43.96 4.55
532 557 1.758906 CTCCGTCCTCTTCTCCCCC 60.759 68.421 0.00 0.00 0.00 5.40
533 558 2.428085 GCTCCGTCCTCTTCTCCCC 61.428 68.421 0.00 0.00 0.00 4.81
534 559 2.776913 CGCTCCGTCCTCTTCTCCC 61.777 68.421 0.00 0.00 0.00 4.30
535 560 1.720694 CTCGCTCCGTCCTCTTCTCC 61.721 65.000 0.00 0.00 0.00 3.71
536 561 0.745128 TCTCGCTCCGTCCTCTTCTC 60.745 60.000 0.00 0.00 0.00 2.87
537 562 0.746563 CTCTCGCTCCGTCCTCTTCT 60.747 60.000 0.00 0.00 0.00 2.85
538 563 0.745128 TCTCTCGCTCCGTCCTCTTC 60.745 60.000 0.00 0.00 0.00 2.87
539 564 0.746563 CTCTCTCGCTCCGTCCTCTT 60.747 60.000 0.00 0.00 0.00 2.85
540 565 1.153249 CTCTCTCGCTCCGTCCTCT 60.153 63.158 0.00 0.00 0.00 3.69
541 566 2.184167 CCTCTCTCGCTCCGTCCTC 61.184 68.421 0.00 0.00 0.00 3.71
542 567 2.124487 CCTCTCTCGCTCCGTCCT 60.124 66.667 0.00 0.00 0.00 3.85
543 568 2.124653 TCCTCTCTCGCTCCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
544 569 1.153329 TCTCCTCTCTCGCTCCGTC 60.153 63.158 0.00 0.00 0.00 4.79
545 570 1.153249 CTCTCCTCTCTCGCTCCGT 60.153 63.158 0.00 0.00 0.00 4.69
546 571 0.105224 TACTCTCCTCTCTCGCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
547 572 2.218603 CTTACTCTCCTCTCTCGCTCC 58.781 57.143 0.00 0.00 0.00 4.70
548 573 2.612212 CACTTACTCTCCTCTCTCGCTC 59.388 54.545 0.00 0.00 0.00 5.03
549 574 2.237643 TCACTTACTCTCCTCTCTCGCT 59.762 50.000 0.00 0.00 0.00 4.93
550 575 2.612212 CTCACTTACTCTCCTCTCTCGC 59.388 54.545 0.00 0.00 0.00 5.03
551 576 3.869065 ACTCACTTACTCTCCTCTCTCG 58.131 50.000 0.00 0.00 0.00 4.04
552 577 5.105917 CCAAACTCACTTACTCTCCTCTCTC 60.106 48.000 0.00 0.00 0.00 3.20
553 578 4.770010 CCAAACTCACTTACTCTCCTCTCT 59.230 45.833 0.00 0.00 0.00 3.10
554 579 4.081917 CCCAAACTCACTTACTCTCCTCTC 60.082 50.000 0.00 0.00 0.00 3.20
555 580 3.835395 CCCAAACTCACTTACTCTCCTCT 59.165 47.826 0.00 0.00 0.00 3.69
556 581 3.579151 ACCCAAACTCACTTACTCTCCTC 59.421 47.826 0.00 0.00 0.00 3.71
557 582 3.588569 ACCCAAACTCACTTACTCTCCT 58.411 45.455 0.00 0.00 0.00 3.69
558 583 4.316645 GAACCCAAACTCACTTACTCTCC 58.683 47.826 0.00 0.00 0.00 3.71
559 584 4.316645 GGAACCCAAACTCACTTACTCTC 58.683 47.826 0.00 0.00 0.00 3.20
560 585 3.244112 CGGAACCCAAACTCACTTACTCT 60.244 47.826 0.00 0.00 0.00 3.24
561 586 3.064931 CGGAACCCAAACTCACTTACTC 58.935 50.000 0.00 0.00 0.00 2.59
562 587 2.701951 TCGGAACCCAAACTCACTTACT 59.298 45.455 0.00 0.00 0.00 2.24
563 588 3.064931 CTCGGAACCCAAACTCACTTAC 58.935 50.000 0.00 0.00 0.00 2.34
564 589 2.549349 GCTCGGAACCCAAACTCACTTA 60.549 50.000 0.00 0.00 0.00 2.24
565 590 1.814248 GCTCGGAACCCAAACTCACTT 60.814 52.381 0.00 0.00 0.00 3.16
566 591 0.250338 GCTCGGAACCCAAACTCACT 60.250 55.000 0.00 0.00 0.00 3.41
567 592 1.566018 CGCTCGGAACCCAAACTCAC 61.566 60.000 0.00 0.00 0.00 3.51
568 593 1.301401 CGCTCGGAACCCAAACTCA 60.301 57.895 0.00 0.00 0.00 3.41
569 594 1.005394 TCGCTCGGAACCCAAACTC 60.005 57.895 0.00 0.00 0.00 3.01
570 595 1.004918 CTCGCTCGGAACCCAAACT 60.005 57.895 0.00 0.00 0.00 2.66
571 596 2.033194 CCTCGCTCGGAACCCAAAC 61.033 63.158 0.00 0.00 0.00 2.93
572 597 2.167398 CTCCTCGCTCGGAACCCAAA 62.167 60.000 0.00 0.00 31.44 3.28
573 598 2.602267 TCCTCGCTCGGAACCCAA 60.602 61.111 0.00 0.00 0.00 4.12
574 599 3.068691 CTCCTCGCTCGGAACCCA 61.069 66.667 0.00 0.00 31.44 4.51
575 600 4.516195 GCTCCTCGCTCGGAACCC 62.516 72.222 0.00 0.00 35.14 4.11
576 601 4.516195 GGCTCCTCGCTCGGAACC 62.516 72.222 0.00 0.00 39.13 3.62
577 602 4.856607 CGGCTCCTCGCTCGGAAC 62.857 72.222 0.00 0.00 39.13 3.62
609 634 0.527817 GATACTCGGGCCGTCACAAG 60.528 60.000 27.32 17.83 0.00 3.16
610 635 1.252215 TGATACTCGGGCCGTCACAA 61.252 55.000 27.32 4.71 0.00 3.33
615 640 3.764237 AATTTATGATACTCGGGCCGT 57.236 42.857 27.32 10.46 0.00 5.68
708 734 0.817634 TGGTCAAGAAACTGGGCGTG 60.818 55.000 0.00 0.00 0.00 5.34
709 735 0.818040 GTGGTCAAGAAACTGGGCGT 60.818 55.000 0.00 0.00 0.00 5.68
710 736 0.817634 TGTGGTCAAGAAACTGGGCG 60.818 55.000 0.00 0.00 0.00 6.13
711 737 1.398692 TTGTGGTCAAGAAACTGGGC 58.601 50.000 0.00 0.00 0.00 5.36
714 740 3.003689 AGCGATTTGTGGTCAAGAAACTG 59.996 43.478 0.00 0.00 34.88 3.16
743 769 1.145803 GTTCCAGAAAGTTCGGTCCG 58.854 55.000 4.39 4.39 0.00 4.79
753 779 0.672401 GACATCGGCCGTTCCAGAAA 60.672 55.000 27.15 2.48 34.01 2.52
766 792 4.899239 GCTGGCTCCGGGACATCG 62.899 72.222 0.00 0.00 29.39 3.84
767 793 4.899239 CGCTGGCTCCGGGACATC 62.899 72.222 0.00 0.00 29.39 3.06
781 807 4.427661 GTCAGAGACAGCGCCGCT 62.428 66.667 5.39 5.39 40.77 5.52
782 808 4.724602 TGTCAGAGACAGCGCCGC 62.725 66.667 2.29 0.00 37.67 6.53
783 809 2.807045 GTGTCAGAGACAGCGCCG 60.807 66.667 2.29 0.00 43.57 6.46
784 810 2.807045 CGTGTCAGAGACAGCGCC 60.807 66.667 2.29 0.00 43.57 6.53
785 811 2.083522 GTCGTGTCAGAGACAGCGC 61.084 63.158 0.00 0.00 43.57 5.92
812 838 4.912395 TGTTTTGGGCCGCCAGCT 62.912 61.111 12.58 0.00 43.05 4.24
923 949 3.771568 TTTCCGTCCGACGCGTGTT 62.772 57.895 20.70 0.00 40.91 3.32
1581 2088 3.178611 AGGAATCGGGGGATGGCC 61.179 66.667 0.00 0.00 0.00 5.36
1600 2107 1.376037 GGGGACAGCAGAGAAACCG 60.376 63.158 0.00 0.00 0.00 4.44
1715 2222 4.899239 GCGGATGACCTGCTCCCG 62.899 72.222 0.00 0.00 42.74 5.14
1817 2325 3.178267 CAAGCAGCGAAAACACAAGAAA 58.822 40.909 0.00 0.00 0.00 2.52
1864 2372 2.099652 CTGACAGGCCACCGTCTTGA 62.100 60.000 17.65 1.35 31.80 3.02
1940 2448 2.026636 TGCGTTCTTGCTTACCCCTAAT 60.027 45.455 0.00 0.00 35.36 1.73
2018 2526 4.463050 TGGGGGATAATCCAACCAATAC 57.537 45.455 0.00 0.00 40.60 1.89
2038 2546 9.731819 CATGGAATTCTACAGAATCTTGAAATG 57.268 33.333 5.23 1.93 43.41 2.32
2052 2560 9.962783 ATTACTACTACGAACATGGAATTCTAC 57.037 33.333 5.23 0.00 0.00 2.59
2067 2575 8.280497 GCATAATCCAACCAAATTACTACTACG 58.720 37.037 0.00 0.00 0.00 3.51
2070 2578 8.052748 TGAGCATAATCCAACCAAATTACTACT 58.947 33.333 0.00 0.00 0.00 2.57
2153 2666 7.543359 AACATGAAATTCCAAGGAAATCTGA 57.457 32.000 5.52 0.00 37.69 3.27
2154 2667 7.658575 ACAAACATGAAATTCCAAGGAAATCTG 59.341 33.333 5.52 9.54 37.69 2.90
2155 2668 7.738847 ACAAACATGAAATTCCAAGGAAATCT 58.261 30.769 5.52 0.00 37.69 2.40
2157 2670 8.650490 ACTACAAACATGAAATTCCAAGGAAAT 58.350 29.630 5.52 0.00 37.69 2.17
2161 2674 9.357652 CATTACTACAAACATGAAATTCCAAGG 57.642 33.333 0.00 0.00 0.00 3.61
2162 2675 8.863049 GCATTACTACAAACATGAAATTCCAAG 58.137 33.333 0.00 0.00 0.00 3.61
2163 2676 7.816995 GGCATTACTACAAACATGAAATTCCAA 59.183 33.333 0.00 0.00 0.00 3.53
2193 2712 5.461526 GCCAAAAGGTGTGAATCTCTAAAC 58.538 41.667 0.00 0.00 0.00 2.01
2199 2718 2.380064 TGGCCAAAAGGTGTGAATCT 57.620 45.000 0.61 0.00 0.00 2.40
2201 2721 5.559148 TTAATTGGCCAAAAGGTGTGAAT 57.441 34.783 24.71 0.00 0.00 2.57
2245 2765 6.649155 TCTGCTAATAGGTTTGCAATCTACA 58.351 36.000 0.00 0.04 43.55 2.74
2265 2785 2.167281 TCTGCTCCTGTATTGTCTCTGC 59.833 50.000 0.00 0.00 0.00 4.26
2266 2786 4.462508 TTCTGCTCCTGTATTGTCTCTG 57.537 45.455 0.00 0.00 0.00 3.35
2311 2834 3.718434 AGAATGATCTGGGCATAAGGTCA 59.282 43.478 0.00 0.34 39.07 4.02
2313 2836 3.979347 AGAGAATGATCTGGGCATAAGGT 59.021 43.478 0.00 0.00 35.54 3.50
2328 2851 5.295292 ACATCCAATTAACGCTCAGAGAATG 59.705 40.000 0.00 0.00 0.00 2.67
2384 2907 2.423538 AGAACAAACAGAAGGTGCACAC 59.576 45.455 20.43 8.23 0.00 3.82
2413 2936 7.069085 AGGCACTTGATTTATTGCATCATAAGT 59.931 33.333 0.00 0.00 36.66 2.24
2451 2974 6.420604 CGTGAGCCTTGAACAAACAAAAATAT 59.579 34.615 0.00 0.00 0.00 1.28
2527 3050 0.379669 ACGACGATACTTACCGGCAG 59.620 55.000 0.00 0.00 32.40 4.85
2537 3060 2.053627 ACGGAACACAAACGACGATAC 58.946 47.619 0.00 0.00 0.00 2.24
2544 3067 2.033151 GGAGAAAGACGGAACACAAACG 60.033 50.000 0.00 0.00 0.00 3.60
2556 3079 3.214328 TGAAGCAAAGGTGGAGAAAGAC 58.786 45.455 0.00 0.00 0.00 3.01
2577 3100 4.937201 TGACATGCGTTAGTATCCTGAT 57.063 40.909 0.00 0.00 0.00 2.90
2578 3101 4.099419 ACATGACATGCGTTAGTATCCTGA 59.901 41.667 15.49 0.00 0.00 3.86
2579 3102 4.371786 ACATGACATGCGTTAGTATCCTG 58.628 43.478 15.49 0.00 0.00 3.86
2883 3414 6.420913 ACAATATCGTCCTAATGGTAAGCT 57.579 37.500 0.00 0.00 34.23 3.74
2884 3415 6.929606 AGAACAATATCGTCCTAATGGTAAGC 59.070 38.462 0.00 0.00 34.23 3.09
2885 3416 9.627395 CTAGAACAATATCGTCCTAATGGTAAG 57.373 37.037 0.00 0.00 34.23 2.34
2886 3417 9.139734 ACTAGAACAATATCGTCCTAATGGTAA 57.860 33.333 0.00 0.00 34.23 2.85
2887 3418 8.701908 ACTAGAACAATATCGTCCTAATGGTA 57.298 34.615 0.00 0.00 34.23 3.25
2888 3419 7.598759 ACTAGAACAATATCGTCCTAATGGT 57.401 36.000 0.00 0.00 34.23 3.55
2889 3420 8.361139 AGAACTAGAACAATATCGTCCTAATGG 58.639 37.037 0.00 0.00 0.00 3.16
2905 3436 7.703197 GGCACTTCAACTATCTAGAACTAGAAC 59.297 40.741 14.25 0.00 44.44 3.01
2906 3437 7.616150 AGGCACTTCAACTATCTAGAACTAGAA 59.384 37.037 14.25 3.47 40.11 2.10
2907 3438 7.120051 AGGCACTTCAACTATCTAGAACTAGA 58.880 38.462 12.92 12.92 40.76 2.43
2908 3439 7.284489 AGAGGCACTTCAACTATCTAGAACTAG 59.716 40.741 0.00 0.00 41.55 2.57
2909 3440 7.067615 CAGAGGCACTTCAACTATCTAGAACTA 59.932 40.741 0.00 0.00 41.55 2.24
2910 3441 5.955355 AGAGGCACTTCAACTATCTAGAACT 59.045 40.000 0.00 0.00 41.55 3.01
2967 3498 9.920946 AAGGTGCCAGATTTAAAGAGATTATAA 57.079 29.630 0.00 0.00 0.00 0.98
2993 3524 5.022122 TCAGGGCCATGTTTGATGATTTTA 58.978 37.500 18.43 0.00 0.00 1.52
3063 3594 6.942532 TTGTGCACTTCTAGAACTTCATTT 57.057 33.333 19.41 0.00 0.00 2.32
3091 3622 3.073650 AGAGTGCAAGGAAAGTCAGGATT 59.926 43.478 0.00 0.00 0.00 3.01
3120 3651 7.495901 AGAGAATGTTCTATCATGTGTACTGG 58.504 38.462 0.00 0.00 37.73 4.00
3179 3710 3.653836 TGGTAACCCCAAGTCACTAACAT 59.346 43.478 0.00 0.00 41.50 2.71
3180 3711 3.047115 TGGTAACCCCAAGTCACTAACA 58.953 45.455 0.00 0.00 41.50 2.41
3297 3828 0.682209 GCCCAGGATGAGCAACATGT 60.682 55.000 0.00 0.00 39.69 3.21
3314 3845 5.064452 CACACAGATAGAGAAGTTTGATGCC 59.936 44.000 0.00 0.00 0.00 4.40
3326 3857 6.095300 AGTGAGATCTTGTCACACAGATAGAG 59.905 42.308 14.08 0.00 46.81 2.43
3329 3860 6.435591 AGAAGTGAGATCTTGTCACACAGATA 59.564 38.462 14.08 0.00 46.81 1.98
3352 3883 3.486383 GGGTGTGATGTCAAGGAAAAGA 58.514 45.455 0.00 0.00 0.00 2.52
3370 3901 0.252057 GCTGGGGTTAAATGTGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
3374 3905 1.066929 GCAAGGCTGGGGTTAAATGTG 60.067 52.381 0.00 0.00 0.00 3.21
3375 3906 1.266178 GCAAGGCTGGGGTTAAATGT 58.734 50.000 0.00 0.00 0.00 2.71
3376 3907 1.265236 TGCAAGGCTGGGGTTAAATG 58.735 50.000 0.00 0.00 0.00 2.32
3428 3960 4.464244 CAGTGGACTTCTCCTGACTAATGA 59.536 45.833 0.00 0.00 37.48 2.57
3529 4061 1.821216 AATGAACCAAGTACAGGGCG 58.179 50.000 8.94 0.00 0.00 6.13
3573 4105 0.449388 GCCTGACGAGAATTGGCTTG 59.551 55.000 0.00 0.00 40.36 4.01
3585 4117 1.725641 TTGCTGTGATAAGCCTGACG 58.274 50.000 0.00 0.00 42.83 4.35
3641 4173 6.601613 CAGCCATAGTTAATTTTGACAGGGTA 59.398 38.462 0.00 0.00 0.00 3.69
3700 4232 6.448387 AGATCCTTAAGATTCAAAGGGGAAGA 59.552 38.462 3.36 0.57 42.20 2.87
3719 4251 5.471424 TGATCCAACTCTCCAATAGATCCT 58.529 41.667 0.00 0.00 32.41 3.24
3724 4256 7.232330 TCACTATCTGATCCAACTCTCCAATAG 59.768 40.741 0.00 0.00 0.00 1.73
3765 4297 1.128692 GTAGGCGTGTGATTGAAGCAC 59.871 52.381 6.63 6.63 36.81 4.40
3768 4300 0.999406 CGGTAGGCGTGTGATTGAAG 59.001 55.000 0.00 0.00 0.00 3.02
3772 4307 1.206132 TCATTCGGTAGGCGTGTGATT 59.794 47.619 0.00 0.00 0.00 2.57
3823 4358 9.237846 GGCAAGCAGAAAAATAGAATTATGTAC 57.762 33.333 0.00 0.00 0.00 2.90
3826 4361 8.706492 TTGGCAAGCAGAAAAATAGAATTATG 57.294 30.769 0.00 0.00 0.00 1.90
3903 4438 0.515564 AAAAGTCGGTGCGTACATGC 59.484 50.000 5.86 0.00 0.00 4.06
3961 4496 9.862371 TTAGATGTTCTAGATGTGAGTTCTTTC 57.138 33.333 0.00 0.00 29.56 2.62
4115 4651 9.761504 GAATATAGACCTTCCACTTTTAGTACC 57.238 37.037 0.00 0.00 0.00 3.34
4125 4666 5.299782 ACTCGTCAGAATATAGACCTTCCAC 59.700 44.000 0.00 0.00 0.00 4.02
4199 4740 1.726791 CCAACTCCGTGAATCAAGTCG 59.273 52.381 0.00 0.00 0.00 4.18
4287 4828 8.540388 AGTGCTGGTGAAGTAAATTAGAATAGA 58.460 33.333 0.00 0.00 0.00 1.98
4301 4842 0.946221 GTGACCGAGTGCTGGTGAAG 60.946 60.000 0.00 0.00 40.63 3.02
4356 4897 9.561069 AAGTGTAGATTCAAACATGACTACTTT 57.439 29.630 0.00 0.00 33.68 2.66
4432 4973 3.189287 AGGAAACAAGAGCATGTTAAGCG 59.811 43.478 3.43 0.00 42.49 4.68
4470 5011 2.301577 ACAAGAGCACGGATAAGAGC 57.698 50.000 0.00 0.00 0.00 4.09
4503 5047 3.701205 TGAGCAATACCACAGTCACAT 57.299 42.857 0.00 0.00 0.00 3.21
4581 5125 7.935338 ACTTCTGCATGAATTGTTAACAAAG 57.065 32.000 23.97 14.79 39.55 2.77
4672 5216 4.923893 GCAATCAGCAGCACATATTACAA 58.076 39.130 0.00 0.00 44.79 2.41
4695 5240 5.749109 GGTCAGACCAGAATATAACTGAACG 59.251 44.000 15.43 0.00 38.42 3.95
4702 5247 4.707934 TGACACGGTCAGACCAGAATATAA 59.292 41.667 20.13 0.00 38.47 0.98
4840 5385 7.977853 GCAAATATCTCAAAGAACATGGTGAAT 59.022 33.333 0.00 0.00 0.00 2.57
5105 5650 2.762887 TGCATTTCACAAACTCCACCAA 59.237 40.909 0.00 0.00 0.00 3.67
5200 5745 9.774413 ATTACTTGTTACAGCTTTAGTACACTT 57.226 29.630 0.00 0.00 0.00 3.16
5209 5754 8.686334 CCAATCCATATTACTTGTTACAGCTTT 58.314 33.333 0.00 0.00 0.00 3.51
5210 5755 8.052748 TCCAATCCATATTACTTGTTACAGCTT 58.947 33.333 0.00 0.00 0.00 3.74
5211 5756 7.573710 TCCAATCCATATTACTTGTTACAGCT 58.426 34.615 0.00 0.00 0.00 4.24
5212 5757 7.041098 CCTCCAATCCATATTACTTGTTACAGC 60.041 40.741 0.00 0.00 0.00 4.40
5214 5759 7.128109 TCCCTCCAATCCATATTACTTGTTACA 59.872 37.037 0.00 0.00 0.00 2.41
5215 5760 7.514721 TCCCTCCAATCCATATTACTTGTTAC 58.485 38.462 0.00 0.00 0.00 2.50
5217 5762 6.160459 ACTCCCTCCAATCCATATTACTTGTT 59.840 38.462 0.00 0.00 0.00 2.83
5218 5763 5.672194 ACTCCCTCCAATCCATATTACTTGT 59.328 40.000 0.00 0.00 0.00 3.16
5219 5764 6.192970 ACTCCCTCCAATCCATATTACTTG 57.807 41.667 0.00 0.00 0.00 3.16
5220 5765 6.013293 GCTACTCCCTCCAATCCATATTACTT 60.013 42.308 0.00 0.00 0.00 2.24
5222 5767 5.485708 AGCTACTCCCTCCAATCCATATTAC 59.514 44.000 0.00 0.00 0.00 1.89
5225 5770 4.153371 AGCTACTCCCTCCAATCCATAT 57.847 45.455 0.00 0.00 0.00 1.78
5227 5772 2.503869 AGCTACTCCCTCCAATCCAT 57.496 50.000 0.00 0.00 0.00 3.41
5228 5773 2.270434 AAGCTACTCCCTCCAATCCA 57.730 50.000 0.00 0.00 0.00 3.41
5229 5774 2.158740 GGAAAGCTACTCCCTCCAATCC 60.159 54.545 3.75 0.00 0.00 3.01
5230 5775 2.774809 AGGAAAGCTACTCCCTCCAATC 59.225 50.000 10.49 0.00 32.95 2.67
5232 5777 2.344093 AGGAAAGCTACTCCCTCCAA 57.656 50.000 10.49 0.00 32.95 3.53
5233 5778 2.344093 AAGGAAAGCTACTCCCTCCA 57.656 50.000 10.49 0.00 32.95 3.86
5252 5797 9.707957 ACCAATCCACCATCATTATACTAAAAA 57.292 29.630 0.00 0.00 0.00 1.94
5253 5798 9.130661 CACCAATCCACCATCATTATACTAAAA 57.869 33.333 0.00 0.00 0.00 1.52
5254 5799 8.498575 TCACCAATCCACCATCATTATACTAAA 58.501 33.333 0.00 0.00 0.00 1.85
5255 5800 8.040002 TCACCAATCCACCATCATTATACTAA 57.960 34.615 0.00 0.00 0.00 2.24
5313 5858 8.226819 TGTCAGAATGTGTTGGTTTATGTAAA 57.773 30.769 0.00 0.00 37.40 2.01
5345 5890 3.765381 TGGAAGATCTGAATTTGTGGCA 58.235 40.909 0.00 0.00 0.00 4.92
5372 5917 3.055094 AGGAAAGAGTGCCGAATACATGT 60.055 43.478 2.69 2.69 0.00 3.21
5440 5985 4.095483 GGTTGAGATGCAGAAACCATAGTG 59.905 45.833 14.42 0.00 41.44 2.74
5458 6003 5.759059 AGCTAGATCATTTGGAATGGTTGA 58.241 37.500 0.00 0.00 0.00 3.18
5468 6013 7.493645 TGTCTATGTGTCAAGCTAGATCATTTG 59.506 37.037 0.00 0.00 0.00 2.32
5553 6102 9.642343 TGAGTATCAATGAACTAGGTGTATAGT 57.358 33.333 0.00 0.00 45.97 2.12
5597 6146 9.961265 AAATGTATGCTCACTGAAATGATATTG 57.039 29.630 0.00 0.00 0.00 1.90
5615 6164 3.440173 ACAGACAAGGGCGAAAATGTATG 59.560 43.478 0.00 0.00 40.01 2.39
5626 6175 2.038557 TGTTAAGAGGACAGACAAGGGC 59.961 50.000 0.00 0.00 0.00 5.19
5718 6267 5.238432 TCGAAGTGTTCAAGCAAACATATGT 59.762 36.000 1.41 1.41 40.96 2.29
5767 6316 6.016610 GTCCTGTGCCAAACAATAAAGAACTA 60.017 38.462 0.00 0.00 38.67 2.24
5798 6347 2.291475 TGCCCACTCAAAATCATGGCTA 60.291 45.455 0.00 0.00 38.23 3.93
5979 6528 4.909880 GCGTGAGTATGAAGGAAAAACAAC 59.090 41.667 0.00 0.00 0.00 3.32
6057 6614 1.929836 CGTTATCTTCCAGCTGCAGAC 59.070 52.381 20.43 9.11 0.00 3.51
6125 6682 7.250569 CAGTGATATACAATGTTGGGTTTGAC 58.749 38.462 0.00 0.00 39.36 3.18
6185 6742 5.719085 TGAAATCTTCCTTCAGAGAGCTAGT 59.281 40.000 0.00 0.00 0.00 2.57
6551 7868 4.092091 CCAAGTCAGTTTCACGATCTTAGC 59.908 45.833 0.00 0.00 0.00 3.09
6560 7877 1.604278 GCAGACCCAAGTCAGTTTCAC 59.396 52.381 0.00 0.00 46.15 3.18
6575 7892 4.034975 GCTTGAATAACCATCAGAGCAGAC 59.965 45.833 0.00 0.00 34.25 3.51
6610 7927 5.047943 AGACACTATGCCGATAATACTGACC 60.048 44.000 0.00 0.00 0.00 4.02
6611 7928 5.859114 CAGACACTATGCCGATAATACTGAC 59.141 44.000 0.00 0.00 0.00 3.51
6613 7930 5.859114 GTCAGACACTATGCCGATAATACTG 59.141 44.000 0.00 0.00 0.00 2.74
6614 7931 5.535030 TGTCAGACACTATGCCGATAATACT 59.465 40.000 0.00 0.00 0.00 2.12
6615 7932 5.769367 TGTCAGACACTATGCCGATAATAC 58.231 41.667 0.00 0.00 0.00 1.89
6616 7933 6.264518 TCTTGTCAGACACTATGCCGATAATA 59.735 38.462 1.52 0.00 0.00 0.98
6618 7935 4.401202 TCTTGTCAGACACTATGCCGATAA 59.599 41.667 1.52 0.00 0.00 1.75
6666 7990 3.325135 ACATTCTACTGCTATAGGCCACC 59.675 47.826 5.01 0.00 40.92 4.61
6721 8045 2.093500 CAGCTGTGAGCCATGTAACCTA 60.093 50.000 5.25 0.00 43.77 3.08
6722 8046 0.987294 AGCTGTGAGCCATGTAACCT 59.013 50.000 0.00 0.00 43.77 3.50
6723 8047 1.089920 CAGCTGTGAGCCATGTAACC 58.910 55.000 5.25 0.00 43.77 2.85
6749 8094 1.622312 GTAACCCTTCCACCGACTTCT 59.378 52.381 0.00 0.00 0.00 2.85
6754 8099 0.178926 TCCAGTAACCCTTCCACCGA 60.179 55.000 0.00 0.00 0.00 4.69
6893 8249 7.785033 TGAGAAGATCAACTATACATTGCAGA 58.215 34.615 0.00 0.00 34.02 4.26
6979 8349 2.017782 TGGTTCAGTGTTAGCGCAAAA 58.982 42.857 11.47 0.00 0.00 2.44
6981 8351 1.890876 ATGGTTCAGTGTTAGCGCAA 58.109 45.000 11.47 0.00 0.00 4.85
6983 8353 2.076863 AGAATGGTTCAGTGTTAGCGC 58.923 47.619 0.00 0.00 0.00 5.92
6984 8354 4.749245 AAAGAATGGTTCAGTGTTAGCG 57.251 40.909 0.00 0.00 0.00 4.26
6985 8355 5.831997 ACAAAAGAATGGTTCAGTGTTAGC 58.168 37.500 0.00 0.00 0.00 3.09
6986 8356 8.154649 AGTACAAAAGAATGGTTCAGTGTTAG 57.845 34.615 0.00 0.00 0.00 2.34
6987 8357 7.227910 GGAGTACAAAAGAATGGTTCAGTGTTA 59.772 37.037 0.00 0.00 0.00 2.41
6989 8359 5.531287 GGAGTACAAAAGAATGGTTCAGTGT 59.469 40.000 0.00 0.00 0.00 3.55
6991 8361 4.755123 CGGAGTACAAAAGAATGGTTCAGT 59.245 41.667 0.00 0.00 0.00 3.41
6992 8362 4.154195 CCGGAGTACAAAAGAATGGTTCAG 59.846 45.833 0.00 0.00 0.00 3.02
6994 8364 4.320870 TCCGGAGTACAAAAGAATGGTTC 58.679 43.478 0.00 0.00 0.00 3.62
6997 8367 3.684788 CACTCCGGAGTACAAAAGAATGG 59.315 47.826 35.80 15.62 40.20 3.16
7000 8370 2.549349 GGCACTCCGGAGTACAAAAGAA 60.549 50.000 35.80 0.00 40.20 2.52
7002 8372 1.002087 AGGCACTCCGGAGTACAAAAG 59.998 52.381 35.80 22.95 40.20 2.27
7007 8377 0.386113 GATCAGGCACTCCGGAGTAC 59.614 60.000 35.80 29.92 39.89 2.73
7013 8477 0.463204 ACATCAGATCAGGCACTCCG 59.537 55.000 0.00 0.00 34.60 4.63
7015 8479 1.209019 ACCACATCAGATCAGGCACTC 59.791 52.381 0.00 0.00 34.60 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.