Multiple sequence alignment - TraesCS2D01G094100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G094100 chr2D 100.000 7199 0 0 1 7199 45674616 45681814 0.000000e+00 13295.0
1 TraesCS2D01G094100 chr2D 86.638 943 69 27 1 903 87417496 87416571 0.000000e+00 990.0
2 TraesCS2D01G094100 chr2D 85.410 939 84 18 1 908 106661089 106660173 0.000000e+00 926.0
3 TraesCS2D01G094100 chr2D 85.547 941 65 23 1 901 318559479 318558570 0.000000e+00 918.0
4 TraesCS2D01G094100 chr2D 97.391 115 2 1 6375 6489 139026163 139026050 2.050000e-45 195.0
5 TraesCS2D01G094100 chr2A 96.290 5472 158 22 931 6380 49171545 49176993 0.000000e+00 8938.0
6 TraesCS2D01G094100 chr2A 95.983 697 24 4 6504 7199 49177295 49177988 0.000000e+00 1129.0
7 TraesCS2D01G094100 chr2A 86.374 844 68 20 1 825 486491726 486492541 0.000000e+00 878.0
8 TraesCS2D01G094100 chr2A 84.867 641 51 14 1 622 762608087 762607474 7.990000e-169 604.0
9 TraesCS2D01G094100 chr2A 97.826 46 1 0 901 946 49171482 49171527 5.990000e-11 80.5
10 TraesCS2D01G094100 chr2B 94.842 5487 240 22 916 6384 72811061 72816522 0.000000e+00 8525.0
11 TraesCS2D01G094100 chr2B 94.321 722 30 4 6487 7199 72816520 72817239 0.000000e+00 1096.0
12 TraesCS2D01G094100 chr2B 96.639 119 2 2 6372 6490 588685018 588684902 5.700000e-46 196.0
13 TraesCS2D01G094100 chr7D 89.964 837 62 12 1 823 171318502 171319330 0.000000e+00 1061.0
14 TraesCS2D01G094100 chr7D 97.414 116 2 1 6383 6497 568753473 568753358 5.700000e-46 196.0
15 TraesCS2D01G094100 chr7D 89.041 73 5 3 834 904 185723828 185723899 3.580000e-13 87.9
16 TraesCS2D01G094100 chr7D 81.944 72 12 1 833 903 548895392 548895321 7.800000e-05 60.2
17 TraesCS2D01G094100 chr5A 86.320 943 77 24 1 903 535585394 535584464 0.000000e+00 979.0
18 TraesCS2D01G094100 chr5A 84.177 929 97 30 1 901 419677304 419678210 0.000000e+00 856.0
19 TraesCS2D01G094100 chr5D 87.485 839 69 18 1 820 47279535 47280356 0.000000e+00 935.0
20 TraesCS2D01G094100 chr5D 85.606 924 77 21 1 901 498652654 498651764 0.000000e+00 918.0
21 TraesCS2D01G094100 chr5D 86.312 789 51 23 14 774 48520223 48519464 0.000000e+00 806.0
22 TraesCS2D01G094100 chr5D 88.618 492 31 7 1 477 422027574 422027093 6.260000e-160 575.0
23 TraesCS2D01G094100 chr5D 86.957 276 29 5 4220 4490 497236681 497236408 3.260000e-78 303.0
24 TraesCS2D01G094100 chr5D 73.776 858 128 55 88 903 479525675 479526477 1.550000e-61 248.0
25 TraesCS2D01G094100 chr4D 85.957 940 54 29 1 901 91080145 91079245 0.000000e+00 933.0
26 TraesCS2D01G094100 chr4D 83.029 931 104 27 1 910 141809308 141808411 0.000000e+00 795.0
27 TraesCS2D01G094100 chr4D 100.000 28 0 0 876 903 478733447 478733474 1.300000e-02 52.8
28 TraesCS2D01G094100 chr6A 84.803 941 85 29 1 903 3307709 3308629 0.000000e+00 893.0
29 TraesCS2D01G094100 chr1A 84.459 933 100 24 1 903 360994166 360993249 0.000000e+00 878.0
30 TraesCS2D01G094100 chr1A 86.301 73 7 3 834 904 530740057 530740128 7.740000e-10 76.8
31 TraesCS2D01G094100 chr7B 84.043 940 76 32 1 908 19278122 19277225 0.000000e+00 837.0
32 TraesCS2D01G094100 chr7B 95.798 119 4 1 6378 6496 423767203 423767086 2.650000e-44 191.0
33 TraesCS2D01G094100 chr7B 85.000 80 9 3 826 903 633044668 633044590 2.150000e-10 78.7
34 TraesCS2D01G094100 chr1D 80.902 754 67 32 2 727 110501556 110502260 2.300000e-144 523.0
35 TraesCS2D01G094100 chr1D 84.507 71 10 1 834 903 325809798 325809728 1.300000e-07 69.4
36 TraesCS2D01G094100 chr6D 100.000 109 0 0 6383 6491 289718981 289718873 1.220000e-47 202.0
37 TraesCS2D01G094100 chr6B 97.436 117 3 0 6381 6497 20752605 20752489 4.400000e-47 200.0
38 TraesCS2D01G094100 chr6B 95.082 122 5 1 6379 6499 415887383 415887504 2.650000e-44 191.0
39 TraesCS2D01G094100 chr6B 85.000 60 8 1 844 903 29758678 29758620 7.800000e-05 60.2
40 TraesCS2D01G094100 chr3A 91.667 132 9 2 6358 6489 431128974 431129103 1.600000e-41 182.0
41 TraesCS2D01G094100 chr3B 91.667 132 7 4 6361 6489 776360203 776360333 5.740000e-41 180.0
42 TraesCS2D01G094100 chr4A 90.517 116 11 0 4375 4490 519157417 519157532 3.480000e-33 154.0
43 TraesCS2D01G094100 chrUn 100.000 28 0 0 876 903 73666777 73666750 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G094100 chr2D 45674616 45681814 7198 False 13295.0 13295 100.000000 1 7199 1 chr2D.!!$F1 7198
1 TraesCS2D01G094100 chr2D 87416571 87417496 925 True 990.0 990 86.638000 1 903 1 chr2D.!!$R1 902
2 TraesCS2D01G094100 chr2D 106660173 106661089 916 True 926.0 926 85.410000 1 908 1 chr2D.!!$R2 907
3 TraesCS2D01G094100 chr2D 318558570 318559479 909 True 918.0 918 85.547000 1 901 1 chr2D.!!$R4 900
4 TraesCS2D01G094100 chr2A 49171482 49177988 6506 False 3382.5 8938 96.699667 901 7199 3 chr2A.!!$F2 6298
5 TraesCS2D01G094100 chr2A 486491726 486492541 815 False 878.0 878 86.374000 1 825 1 chr2A.!!$F1 824
6 TraesCS2D01G094100 chr2A 762607474 762608087 613 True 604.0 604 84.867000 1 622 1 chr2A.!!$R1 621
7 TraesCS2D01G094100 chr2B 72811061 72817239 6178 False 4810.5 8525 94.581500 916 7199 2 chr2B.!!$F1 6283
8 TraesCS2D01G094100 chr7D 171318502 171319330 828 False 1061.0 1061 89.964000 1 823 1 chr7D.!!$F1 822
9 TraesCS2D01G094100 chr5A 535584464 535585394 930 True 979.0 979 86.320000 1 903 1 chr5A.!!$R1 902
10 TraesCS2D01G094100 chr5A 419677304 419678210 906 False 856.0 856 84.177000 1 901 1 chr5A.!!$F1 900
11 TraesCS2D01G094100 chr5D 47279535 47280356 821 False 935.0 935 87.485000 1 820 1 chr5D.!!$F1 819
12 TraesCS2D01G094100 chr5D 498651764 498652654 890 True 918.0 918 85.606000 1 901 1 chr5D.!!$R4 900
13 TraesCS2D01G094100 chr5D 48519464 48520223 759 True 806.0 806 86.312000 14 774 1 chr5D.!!$R1 760
14 TraesCS2D01G094100 chr5D 479525675 479526477 802 False 248.0 248 73.776000 88 903 1 chr5D.!!$F2 815
15 TraesCS2D01G094100 chr4D 91079245 91080145 900 True 933.0 933 85.957000 1 901 1 chr4D.!!$R1 900
16 TraesCS2D01G094100 chr4D 141808411 141809308 897 True 795.0 795 83.029000 1 910 1 chr4D.!!$R2 909
17 TraesCS2D01G094100 chr6A 3307709 3308629 920 False 893.0 893 84.803000 1 903 1 chr6A.!!$F1 902
18 TraesCS2D01G094100 chr1A 360993249 360994166 917 True 878.0 878 84.459000 1 903 1 chr1A.!!$R1 902
19 TraesCS2D01G094100 chr7B 19277225 19278122 897 True 837.0 837 84.043000 1 908 1 chr7B.!!$R1 907
20 TraesCS2D01G094100 chr1D 110501556 110502260 704 False 523.0 523 80.902000 2 727 1 chr1D.!!$F1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 820 0.806241 TGTTCGCCGAATTTTAGCCC 59.194 50.000 1.55 0.00 0.00 5.19 F
1277 1439 0.248949 GTAGTGGTCGGAGATTCGCC 60.249 60.000 0.00 0.00 40.67 5.54 F
2118 2295 0.618458 ACAGCCGGATTATGGTGTGT 59.382 50.000 5.05 0.00 41.28 3.72 F
3959 4138 1.000607 CTATGGATTGCATGCACTGGC 60.001 52.381 22.58 9.73 41.68 4.85 F
4104 4283 2.306805 TCCAATGATGTGCAGAACTCCT 59.693 45.455 0.00 0.00 0.00 3.69 F
5203 5389 0.652592 CGGAAGCAGCGGTAAATGAG 59.347 55.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1913 0.400594 TGATCCTATCTCGGCGAGGA 59.599 55.000 33.93 25.10 43.46 3.71 R
2317 2494 1.131126 CTAAATTGCTGTCACTGCCCG 59.869 52.381 3.95 0.00 0.00 6.13 R
4104 4283 1.153524 AATGACAAGGGTGCCTGCA 59.846 52.632 0.00 0.00 32.13 4.41 R
4942 5128 0.904865 ACCTGTCATTCGCCTCCTGA 60.905 55.000 0.00 0.00 0.00 3.86 R
5602 5789 1.470098 CCTGAAAGCCAAATGGAGTCG 59.530 52.381 2.98 0.00 37.39 4.18 R
6390 6581 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
313 365 1.513158 CTCGCCTCCGTGAAGACAT 59.487 57.895 0.00 0.00 35.54 3.06
723 820 0.806241 TGTTCGCCGAATTTTAGCCC 59.194 50.000 1.55 0.00 0.00 5.19
846 965 2.867091 CGATTTTAGCGCCGGTCGG 61.867 63.158 17.73 4.85 38.94 4.79
872 991 3.011583 GGCGATTTTACGAGCCGG 58.988 61.111 0.00 0.00 40.17 6.13
874 993 2.618839 CGATTTTACGAGCCGGCG 59.381 61.111 23.20 10.77 35.09 6.46
1243 1404 0.971386 TTAGTATCGGGCGGGGATTC 59.029 55.000 0.00 0.00 0.00 2.52
1277 1439 0.248949 GTAGTGGTCGGAGATTCGCC 60.249 60.000 0.00 0.00 40.67 5.54
1306 1468 2.474526 CGTGCTGAATTTTAGTCGCCTG 60.475 50.000 0.00 0.00 0.00 4.85
1368 1532 3.990469 CGGATCTCCTTGATTAATCGTGG 59.010 47.826 16.14 16.14 35.14 4.94
1396 1560 5.130292 ACTGGAATTTCAGATGCTTTGTG 57.870 39.130 21.00 0.00 38.11 3.33
1413 1577 4.826274 TTGTGATCTTAGGGGAACAGAG 57.174 45.455 0.00 0.00 0.00 3.35
1439 1603 8.443937 GTTGTTAATCTTCTGTAGTTTAGCCAG 58.556 37.037 0.00 0.00 0.00 4.85
1475 1639 8.465201 TGCTTTTGCCTTTTCATTTGTTTTAAT 58.535 25.926 0.00 0.00 46.87 1.40
1515 1679 6.348050 GCTGGTTCAGACTTCAGAGTTAAATG 60.348 42.308 0.00 0.00 35.88 2.32
1525 1689 4.072131 TCAGAGTTAAATGTGCTTCACCC 58.928 43.478 0.00 0.00 32.73 4.61
1596 1768 5.423290 AGAAAATGGAAGATTTAGCCAAGGG 59.577 40.000 0.00 0.00 34.95 3.95
1630 1803 9.095065 ACTTTTGTATAATTAGCAGAACCGTAG 57.905 33.333 0.00 0.00 0.00 3.51
1693 1868 2.236395 TCGTCTCCCTCCAAAGGAAATC 59.764 50.000 0.00 0.00 46.67 2.17
1699 1874 2.357569 CCCTCCAAAGGAAATCCAGGAG 60.358 54.545 20.18 20.18 46.67 3.69
1721 1896 4.317359 TGGATGTGCCACCGAATG 57.683 55.556 0.00 0.00 43.33 2.67
1726 1901 4.120331 GTGCCACCGAATGCCAGC 62.120 66.667 0.00 0.00 0.00 4.85
1738 1913 2.100128 ATGCCAGCTACCATCTCTCT 57.900 50.000 0.00 0.00 0.00 3.10
1845 2020 2.476619 GCATACGGATCGATTCCAGTTG 59.523 50.000 0.00 1.88 45.78 3.16
1871 2046 5.892568 ACATGAGGAGTCGAATGTAAGTAC 58.107 41.667 0.00 0.00 31.63 2.73
1903 2078 6.961359 TTATCGTTTCAGGATAATATGCGG 57.039 37.500 0.00 0.00 32.11 5.69
2096 2273 4.233789 CTCTTCAGTGTGTCTCTTGTAGC 58.766 47.826 0.00 0.00 0.00 3.58
2118 2295 0.618458 ACAGCCGGATTATGGTGTGT 59.382 50.000 5.05 0.00 41.28 3.72
2280 2457 5.221925 TGAGGGGATATTAGGTTGCTGATTC 60.222 44.000 0.00 0.00 0.00 2.52
3018 3195 6.406370 TCAACCTTATATTGGTGAGTCACAG 58.594 40.000 24.20 10.99 37.93 3.66
3143 3321 7.558444 TGTGGTATTTTTAGTTCCAGTGAAGTT 59.442 33.333 0.00 0.00 35.72 2.66
3263 3441 6.475504 TGCACTTGATGAAATCCTTCTAAGA 58.524 36.000 0.00 0.00 44.73 2.10
3350 3528 9.462606 CCAACCTCAAATTAGTTAGGAATTAGT 57.537 33.333 0.00 0.00 33.16 2.24
3709 3887 5.049198 TCGGTATAGGTATTGAACTACTGCG 60.049 44.000 0.00 0.00 0.00 5.18
3766 3944 4.826274 AGCACTACTTTAGCTTCATGGA 57.174 40.909 0.00 0.00 34.37 3.41
3767 3945 4.764172 AGCACTACTTTAGCTTCATGGAG 58.236 43.478 0.00 0.00 34.37 3.86
3768 3946 4.467795 AGCACTACTTTAGCTTCATGGAGA 59.532 41.667 4.75 0.00 34.37 3.71
3812 3990 7.096065 GGCATTGAAACTGTAGCTTGTAAAAAG 60.096 37.037 0.00 0.00 0.00 2.27
3816 3994 9.915629 TTGAAACTGTAGCTTGTAAAAAGAAAA 57.084 25.926 0.00 0.00 0.00 2.29
3886 4065 1.170919 CCAGCTGCCCATGTCTATGC 61.171 60.000 8.66 0.00 32.79 3.14
3959 4138 1.000607 CTATGGATTGCATGCACTGGC 60.001 52.381 22.58 9.73 41.68 4.85
4000 4179 3.489355 ACATGCAGAACAAGAACATGGA 58.511 40.909 0.00 0.00 41.85 3.41
4104 4283 2.306805 TCCAATGATGTGCAGAACTCCT 59.693 45.455 0.00 0.00 0.00 3.69
4234 4413 7.212976 TCTCTTAAACATGTATGCTGATCTCC 58.787 38.462 0.00 0.00 0.00 3.71
4257 4436 3.614092 TCAATCATTTCTGCTCCACCTC 58.386 45.455 0.00 0.00 0.00 3.85
4278 4464 6.207417 ACCTCTTATTTCCACTGTTGTGATTG 59.793 38.462 0.00 0.00 46.55 2.67
4359 4545 4.500887 CGAAAGAGCGGATATGGGAAAGTA 60.501 45.833 0.00 0.00 0.00 2.24
4384 4570 7.484975 AGTGTAGACAAGTACTATGAATCTGC 58.515 38.462 0.00 0.00 0.00 4.26
4409 4595 2.504996 TGCACTGATGTCATACCATCCA 59.495 45.455 0.00 0.00 40.43 3.41
4857 5043 3.772025 TGCCCCGTCATTTGGAAAATATT 59.228 39.130 0.00 0.00 0.00 1.28
4942 5128 7.074237 ACAATCCCTATAATTGGTGAAGGAGAT 59.926 37.037 0.00 0.00 38.23 2.75
5078 5264 8.040727 ACTGCTACATTAAACACATAGTCATCA 58.959 33.333 0.00 0.00 0.00 3.07
5203 5389 0.652592 CGGAAGCAGCGGTAAATGAG 59.347 55.000 0.00 0.00 0.00 2.90
5299 5485 5.189928 TCATGCGTTTATGTTTCCCTGTAT 58.810 37.500 0.00 0.00 0.00 2.29
5302 5488 6.334102 TGCGTTTATGTTTCCCTGTATTTT 57.666 33.333 0.00 0.00 0.00 1.82
5379 5566 6.209391 ACTGGAAAAAGGGAACACATTCATAG 59.791 38.462 0.00 0.00 36.46 2.23
5385 5572 6.636454 AAGGGAACACATTCATAGAACCTA 57.364 37.500 0.00 0.00 36.46 3.08
5635 5822 0.250901 TTTCAGGTTCAGCTCTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
5716 5903 2.368548 TCTAGACACCACTGCACAACAT 59.631 45.455 0.00 0.00 0.00 2.71
5821 6008 6.551601 CCGATACCTATATTAAGATGAGCCCT 59.448 42.308 0.00 0.00 0.00 5.19
5944 6132 5.070685 GGGGTATTATGGGTTCTGAATGTC 58.929 45.833 0.00 0.00 0.00 3.06
5957 6145 6.262273 GGTTCTGAATGTCTTGTTTGTCCTAA 59.738 38.462 0.00 0.00 0.00 2.69
6001 6189 8.082852 TCTAGGACTGAAATATTGCGATACTTC 58.917 37.037 8.00 8.00 0.00 3.01
6061 6249 1.369091 GGTGCCATGCCGTCTTGTAG 61.369 60.000 0.00 0.00 0.00 2.74
6132 6320 6.126796 TGCATGTAATTTGGGAGACTGATAGA 60.127 38.462 0.00 0.00 0.00 1.98
6138 6326 3.903530 TGGGAGACTGATAGATGGCTA 57.096 47.619 0.00 0.00 0.00 3.93
6182 6373 2.226962 AGCAGCACCCTGATCAAATT 57.773 45.000 0.00 0.00 41.77 1.82
6193 6384 3.128242 CCTGATCAAATTCAGTGGTGAGC 59.872 47.826 0.00 0.00 41.30 4.26
6247 6438 3.004629 CACCAGCATGTGAAGCTTTAACA 59.995 43.478 15.71 15.71 41.14 2.41
6280 6471 6.265649 TCACCAAGATATCTAGTCTGGTAAGC 59.734 42.308 21.22 0.00 30.90 3.09
6300 6491 3.054878 GCCTTTCTGTGCAATTGAGTTG 58.945 45.455 10.34 0.00 40.90 3.16
6364 6555 8.603242 TTAGATATCTTAATTTCGGTGCTTCC 57.397 34.615 11.25 0.00 0.00 3.46
6384 6575 7.769044 TGCTTCCTTGATTCTTTAGTATGGTAC 59.231 37.037 0.00 0.00 0.00 3.34
6385 6576 7.988028 GCTTCCTTGATTCTTTAGTATGGTACT 59.012 37.037 0.00 0.00 42.68 2.73
6386 6577 9.535878 CTTCCTTGATTCTTTAGTATGGTACTC 57.464 37.037 0.00 0.00 40.14 2.59
6390 6581 7.598759 TGATTCTTTAGTATGGTACTCCCTC 57.401 40.000 0.00 0.00 40.14 4.30
6391 6582 6.553852 TGATTCTTTAGTATGGTACTCCCTCC 59.446 42.308 0.00 0.00 40.14 4.30
6398 6589 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
6399 6590 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
6400 6591 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
6401 6592 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
6403 6594 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6404 6595 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6405 6596 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6407 6598 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6408 6599 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6410 6601 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
6411 6602 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
6412 6603 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
6413 6604 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
6414 6605 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
6415 6606 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
6416 6607 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
6417 6608 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
6418 6609 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
6420 6611 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
6422 6613 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
6424 6615 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
6426 6617 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
6429 6620 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
6431 6622 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
6432 6623 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
6433 6624 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
6434 6625 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
6436 6627 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
6464 6655 9.606631 AGTTCTAGATACATTCATTTCCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
6466 6657 9.958180 TTCTAGATACATTCATTTCCAAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
6467 6658 9.605275 TCTAGATACATTCATTTCCAAGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
6468 6659 9.388506 CTAGATACATTCATTTCCAAGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
6474 6665 8.306761 ACATTCATTTCCAAGACAAGTAATTCC 58.693 33.333 0.00 0.00 0.00 3.01
6475 6666 6.494893 TCATTTCCAAGACAAGTAATTCCG 57.505 37.500 0.00 0.00 0.00 4.30
6476 6667 6.234920 TCATTTCCAAGACAAGTAATTCCGA 58.765 36.000 0.00 0.00 0.00 4.55
6477 6668 6.712998 TCATTTCCAAGACAAGTAATTCCGAA 59.287 34.615 0.00 0.00 0.00 4.30
6478 6669 5.934935 TTCCAAGACAAGTAATTCCGAAC 57.065 39.130 0.00 0.00 0.00 3.95
6479 6670 3.991773 TCCAAGACAAGTAATTCCGAACG 59.008 43.478 0.00 0.00 0.00 3.95
6481 6672 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
6482 6673 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
6485 6676 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6487 6678 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6489 6680 1.856629 ATTCCGAACGGAGGGAGTAA 58.143 50.000 15.34 0.34 46.06 2.24
6490 6681 1.856629 TTCCGAACGGAGGGAGTAAT 58.143 50.000 15.34 0.00 46.06 1.89
6492 6683 2.579873 TCCGAACGGAGGGAGTAATAG 58.420 52.381 12.04 0.00 39.76 1.73
6493 6684 2.092212 TCCGAACGGAGGGAGTAATAGT 60.092 50.000 12.04 0.00 39.76 2.12
6494 6685 2.692041 CCGAACGGAGGGAGTAATAGTT 59.308 50.000 7.53 0.00 37.50 2.24
6495 6686 3.885297 CCGAACGGAGGGAGTAATAGTTA 59.115 47.826 7.53 0.00 37.50 2.24
6496 6687 4.339247 CCGAACGGAGGGAGTAATAGTTAA 59.661 45.833 7.53 0.00 37.50 2.01
6497 6688 5.163519 CCGAACGGAGGGAGTAATAGTTAAA 60.164 44.000 7.53 0.00 37.50 1.52
6498 6689 6.332630 CGAACGGAGGGAGTAATAGTTAAAA 58.667 40.000 0.00 0.00 0.00 1.52
6499 6690 6.982724 CGAACGGAGGGAGTAATAGTTAAAAT 59.017 38.462 0.00 0.00 0.00 1.82
6500 6691 7.493645 CGAACGGAGGGAGTAATAGTTAAAATT 59.506 37.037 0.00 0.00 0.00 1.82
6502 6693 6.982724 ACGGAGGGAGTAATAGTTAAAATTCG 59.017 38.462 0.00 0.00 0.00 3.34
6567 6944 2.223377 CGAGGGACAAGTTTTCTTTCCG 59.777 50.000 0.00 0.00 38.17 4.30
6572 6949 4.097437 GGGACAAGTTTTCTTTCCGAAGTT 59.903 41.667 0.00 0.00 38.17 2.66
6677 7056 7.336931 GTGCTTCCCTACTAAATTTGATCTGAA 59.663 37.037 0.00 0.00 0.00 3.02
6754 7133 4.105377 AGCTGATACTAATGGCCTTGGATT 59.895 41.667 3.32 0.00 0.00 3.01
6916 7295 4.891627 TCATACATGCCAATAAACACCG 57.108 40.909 0.00 0.00 0.00 4.94
6989 7368 4.451900 AGTTCCTTTCTTGAATGTCACGT 58.548 39.130 0.00 0.00 0.00 4.49
7109 7488 4.714632 GAGGGTAAAATTCGATCCCATCA 58.285 43.478 0.00 0.00 40.48 3.07
7152 7531 4.223032 AGTGAGGTCATTATGTTCGTTCCT 59.777 41.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
417 469 1.899534 GATCTCCTCTAGGGCGCGT 60.900 63.158 8.43 0.00 35.41 6.01
538 599 3.971702 GCCACCCTTGCTGGACCT 61.972 66.667 0.00 0.00 38.35 3.85
690 787 3.302480 CGGCGAACATGACATTACTTAGC 60.302 47.826 0.00 0.00 0.00 3.09
723 820 1.665735 CGGCAAACGGGACAAAGATTG 60.666 52.381 0.00 0.00 39.42 2.67
1243 1404 2.100916 CCACTACAAGACACCCGGATAG 59.899 54.545 0.73 0.00 0.00 2.08
1248 1409 0.388134 CGACCACTACAAGACACCCG 60.388 60.000 0.00 0.00 0.00 5.28
1277 1439 2.036556 AAATTCAGCACGCGAAACAG 57.963 45.000 15.93 0.00 0.00 3.16
1368 1532 4.643784 AGCATCTGAAATTCCAGTCATTCC 59.356 41.667 0.00 0.00 35.71 3.01
1396 1560 4.828072 ACAACTCTGTTCCCCTAAGATC 57.172 45.455 0.00 0.00 28.57 2.75
1413 1577 8.319143 TGGCTAAACTACAGAAGATTAACAAC 57.681 34.615 0.00 0.00 0.00 3.32
1420 1584 6.174049 GTTTCCTGGCTAAACTACAGAAGAT 58.826 40.000 4.28 0.00 34.66 2.40
1439 1603 3.942130 AGGCAAAAGCAGTATGTTTCC 57.058 42.857 0.00 0.00 39.13 3.13
1475 1639 7.336931 GTCTGAACCAGCATTTCCTTAATAAGA 59.663 37.037 0.83 0.00 0.00 2.10
1477 1641 7.175104 AGTCTGAACCAGCATTTCCTTAATAA 58.825 34.615 0.00 0.00 0.00 1.40
1488 1652 2.636893 ACTCTGAAGTCTGAACCAGCAT 59.363 45.455 0.00 0.00 0.00 3.79
1515 1679 1.606668 TCGTTTTGATGGGTGAAGCAC 59.393 47.619 0.00 0.00 0.00 4.40
1525 1689 6.183360 ACAGTATGAGCAGATTCGTTTTGATG 60.183 38.462 0.00 0.00 39.69 3.07
1596 1768 8.609478 TGCTAATTATACAAAAGTTAAAGCGC 57.391 30.769 0.00 0.00 0.00 5.92
1605 1778 9.095065 ACTACGGTTCTGCTAATTATACAAAAG 57.905 33.333 0.00 0.00 0.00 2.27
1630 1803 3.508762 ACGTATCATCGACAAACTGGAC 58.491 45.455 0.00 0.00 34.70 4.02
1693 1868 1.386533 GCACATCCACAATCTCCTGG 58.613 55.000 0.00 0.00 0.00 4.45
1720 1895 1.407936 GAGAGAGATGGTAGCTGGCA 58.592 55.000 0.00 0.00 0.00 4.92
1721 1896 0.678950 GGAGAGAGATGGTAGCTGGC 59.321 60.000 0.00 0.00 0.00 4.85
1726 1901 1.243902 GGCGAGGAGAGAGATGGTAG 58.756 60.000 0.00 0.00 0.00 3.18
1738 1913 0.400594 TGATCCTATCTCGGCGAGGA 59.599 55.000 33.93 25.10 43.46 3.71
1845 2020 6.331061 ACTTACATTCGACTCCTCATGTTAC 58.669 40.000 3.68 0.00 32.15 2.50
1885 2060 4.056050 ACGACCGCATATTATCCTGAAAC 58.944 43.478 0.00 0.00 0.00 2.78
1890 2065 4.184079 GGTTACGACCGCATATTATCCT 57.816 45.455 0.00 0.00 35.91 3.24
1903 2078 7.766283 ACTGTTAACTATAGGAAGGTTACGAC 58.234 38.462 7.22 0.00 0.00 4.34
2096 2273 2.807967 CACACCATAATCCGGCTGTATG 59.192 50.000 0.00 4.23 0.00 2.39
2118 2295 4.950205 AGTAGTTGAGAAAAAGGGACGA 57.050 40.909 0.00 0.00 0.00 4.20
2280 2457 8.115491 CATGAAATGCATCAAATAGACAACAG 57.885 34.615 0.00 0.00 37.62 3.16
2317 2494 1.131126 CTAAATTGCTGTCACTGCCCG 59.869 52.381 3.95 0.00 0.00 6.13
2542 2719 4.545208 TCACCACGTGATGAAGGAATAA 57.455 40.909 19.30 0.00 37.67 1.40
3018 3195 7.859875 GCATCATGAATTAAAAGACTAAGCCTC 59.140 37.037 0.00 0.00 0.00 4.70
3143 3321 2.076100 CAAGTGCGACAAAGAGGCATA 58.924 47.619 0.00 0.00 39.14 3.14
3254 3432 8.435982 ACTAATTTCATCCCTGATCTTAGAAGG 58.564 37.037 0.00 0.00 33.81 3.46
3350 3528 7.857734 TGTTCACAAATGTTTCACTCTCTTA 57.142 32.000 0.00 0.00 0.00 2.10
3359 3537 6.468637 GGCAAAATGTTGTTCACAAATGTTTC 59.531 34.615 0.00 0.00 39.50 2.78
3709 3887 5.745227 TCATGAGAAGAAAGTGTTATCCCC 58.255 41.667 0.00 0.00 0.00 4.81
3746 3924 4.759782 TCTCCATGAAGCTAAAGTAGTGC 58.240 43.478 0.00 0.00 0.00 4.40
3815 3993 8.313292 TGCAAGATCAAAAACAATTAGGCTATT 58.687 29.630 0.00 0.00 0.00 1.73
3816 3994 7.761249 GTGCAAGATCAAAAACAATTAGGCTAT 59.239 33.333 0.00 0.00 0.00 2.97
3835 4014 6.296026 AGGTGTGAGTATTTTAAGTGCAAGA 58.704 36.000 0.00 0.00 0.00 3.02
3886 4065 7.041780 ACAAAAACATGAGTTGTAGTCTAGCAG 60.042 37.037 0.00 0.00 37.68 4.24
3959 4138 6.584942 GCATGTCTTGTGCCAATATTCATATG 59.415 38.462 0.00 0.00 36.61 1.78
4000 4179 5.306114 TCATTGCAATCAGGAGAGATGAT 57.694 39.130 9.53 0.00 39.06 2.45
4071 4250 1.198713 TCATTGGAGAGCCTGGACTC 58.801 55.000 0.00 5.32 36.91 3.36
4104 4283 1.153524 AATGACAAGGGTGCCTGCA 59.846 52.632 0.00 0.00 32.13 4.41
4234 4413 4.015084 AGGTGGAGCAGAAATGATTGAAG 58.985 43.478 0.00 0.00 0.00 3.02
4257 4436 7.920151 TCAAACAATCACAACAGTGGAAATAAG 59.080 33.333 0.00 0.00 34.04 1.73
4278 4464 7.759433 CCCCATGTTATGTTAACAGATTCAAAC 59.241 37.037 14.65 10.82 33.18 2.93
4359 4545 7.340743 AGCAGATTCATAGTACTTGTCTACACT 59.659 37.037 0.00 0.00 0.00 3.55
4384 4570 3.865446 TGGTATGACATCAGTGCAAGAG 58.135 45.455 0.00 0.00 0.00 2.85
4409 4595 8.370182 AGTTCATTTAGCTGGATTTCACATTTT 58.630 29.630 0.00 0.00 0.00 1.82
4454 4640 1.938926 GCAGCTTCGCTTCTTGACTCT 60.939 52.381 0.00 0.00 36.40 3.24
4827 5013 4.956700 TCCAAATGACGGGGCATTAAATTA 59.043 37.500 0.00 0.00 37.50 1.40
4878 5064 6.992063 CAGCAAACCTGTAAGATAAGATGT 57.008 37.500 0.00 0.00 36.79 3.06
4942 5128 0.904865 ACCTGTCATTCGCCTCCTGA 60.905 55.000 0.00 0.00 0.00 3.86
5000 5186 3.519913 AGCCCTAGAAGTTAAAGGACAGG 59.480 47.826 4.82 0.00 31.64 4.00
5078 5264 9.349713 TGACAACAATAAGGTCTATTTCAACTT 57.650 29.630 0.00 0.00 32.84 2.66
5203 5389 7.339482 ACAATCTTACCCCTCTTCTTACAATC 58.661 38.462 0.00 0.00 0.00 2.67
5299 5485 8.547481 AATCCAAAAGAAGGGTAAGAAGAAAA 57.453 30.769 0.00 0.00 0.00 2.29
5302 5488 7.985589 ACTAATCCAAAAGAAGGGTAAGAAGA 58.014 34.615 0.00 0.00 0.00 2.87
5379 5566 9.832445 TGACTGGATTATACAGATTTTAGGTTC 57.168 33.333 11.96 0.00 39.24 3.62
5385 5572 7.557358 TGTGCATGACTGGATTATACAGATTTT 59.443 33.333 11.96 0.00 39.24 1.82
5602 5789 1.470098 CCTGAAAGCCAAATGGAGTCG 59.530 52.381 2.98 0.00 37.39 4.18
5665 5852 2.302019 TGGGACAGGTGACACAACA 58.698 52.632 8.08 0.00 0.00 3.33
5716 5903 1.490490 AGACAAGTCCACCTGAAAGCA 59.510 47.619 0.00 0.00 0.00 3.91
5944 6132 9.106070 AGTAACTACAACTTTAGGACAAACAAG 57.894 33.333 0.00 0.00 0.00 3.16
6001 6189 6.252869 GCATCATAAAATTGACTTGACTGCAG 59.747 38.462 13.48 13.48 0.00 4.41
6132 6320 5.653769 ACTTGCACAATATTTCTGTAGCCAT 59.346 36.000 0.00 0.00 0.00 4.40
6182 6373 1.530655 TCTCACCGCTCACCACTGA 60.531 57.895 0.00 0.00 0.00 3.41
6193 6384 2.209273 TGTGATTGTGTTGTCTCACCG 58.791 47.619 0.00 0.00 37.74 4.94
6280 6471 4.293415 GACAACTCAATTGCACAGAAAGG 58.707 43.478 0.00 0.00 42.62 3.11
6300 6491 3.403038 AGTTGCAGTATCACACAAGGAC 58.597 45.455 0.00 0.00 0.00 3.85
6364 6555 8.024145 AGGGAGTACCATACTAAAGAATCAAG 57.976 38.462 0.00 0.00 43.89 3.02
6384 6575 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6385 6576 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6386 6577 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6390 6581 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
6391 6582 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
6398 6589 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
6399 6590 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
6400 6591 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
6401 6592 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
6403 6594 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
6404 6595 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
6405 6596 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
6407 6598 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
6408 6599 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
6410 6601 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
6439 6630 9.383519 TGTCTTGGAAATGAATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
6440 6631 9.958180 TTGTCTTGGAAATGAATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
6441 6632 9.605275 CTTGTCTTGGAAATGAATGTATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
6442 6633 9.388506 ACTTGTCTTGGAAATGAATGTATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
6450 6641 7.393234 TCGGAATTACTTGTCTTGGAAATGAAT 59.607 33.333 0.00 0.00 0.00 2.57
6451 6642 6.712998 TCGGAATTACTTGTCTTGGAAATGAA 59.287 34.615 0.00 0.00 0.00 2.57
6453 6644 6.494893 TCGGAATTACTTGTCTTGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
6456 6647 4.449743 CGTTCGGAATTACTTGTCTTGGAA 59.550 41.667 0.00 0.00 0.00 3.53
6457 6648 3.991773 CGTTCGGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
6458 6649 3.124636 CCGTTCGGAATTACTTGTCTTGG 59.875 47.826 5.19 0.00 0.00 3.61
6459 6650 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
6461 6652 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
6464 6655 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6466 6657 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6467 6658 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6468 6659 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6471 6662 1.856629 ATTACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.04 33.41 4.30
6472 6663 2.092212 ACTATTACTCCCTCCGTTCGGA 60.092 50.000 13.34 13.34 0.00 4.55
6473 6664 2.305009 ACTATTACTCCCTCCGTTCGG 58.695 52.381 4.74 4.74 0.00 4.30
6474 6665 5.505173 TTAACTATTACTCCCTCCGTTCG 57.495 43.478 0.00 0.00 0.00 3.95
6475 6666 8.728337 AATTTTAACTATTACTCCCTCCGTTC 57.272 34.615 0.00 0.00 0.00 3.95
6476 6667 7.493645 CGAATTTTAACTATTACTCCCTCCGTT 59.506 37.037 0.00 0.00 0.00 4.44
6477 6668 6.982724 CGAATTTTAACTATTACTCCCTCCGT 59.017 38.462 0.00 0.00 0.00 4.69
6478 6669 6.982724 ACGAATTTTAACTATTACTCCCTCCG 59.017 38.462 0.00 0.00 0.00 4.63
6479 6670 7.767659 ACACGAATTTTAACTATTACTCCCTCC 59.232 37.037 0.00 0.00 0.00 4.30
6481 6672 9.159364 GAACACGAATTTTAACTATTACTCCCT 57.841 33.333 0.00 0.00 0.00 4.20
6482 6673 9.159364 AGAACACGAATTTTAACTATTACTCCC 57.841 33.333 0.00 0.00 0.00 4.30
6489 6680 9.052759 AGTCACAAGAACACGAATTTTAACTAT 57.947 29.630 0.00 0.00 0.00 2.12
6490 6681 8.332464 CAGTCACAAGAACACGAATTTTAACTA 58.668 33.333 0.00 0.00 0.00 2.24
6492 6683 6.413818 CCAGTCACAAGAACACGAATTTTAAC 59.586 38.462 0.00 0.00 0.00 2.01
6493 6684 6.094325 ACCAGTCACAAGAACACGAATTTTAA 59.906 34.615 0.00 0.00 0.00 1.52
6494 6685 5.587043 ACCAGTCACAAGAACACGAATTTTA 59.413 36.000 0.00 0.00 0.00 1.52
6495 6686 4.398044 ACCAGTCACAAGAACACGAATTTT 59.602 37.500 0.00 0.00 0.00 1.82
6496 6687 3.945285 ACCAGTCACAAGAACACGAATTT 59.055 39.130 0.00 0.00 0.00 1.82
6497 6688 3.312421 CACCAGTCACAAGAACACGAATT 59.688 43.478 0.00 0.00 0.00 2.17
6498 6689 2.872245 CACCAGTCACAAGAACACGAAT 59.128 45.455 0.00 0.00 0.00 3.34
6499 6690 2.276201 CACCAGTCACAAGAACACGAA 58.724 47.619 0.00 0.00 0.00 3.85
6500 6691 1.472552 CCACCAGTCACAAGAACACGA 60.473 52.381 0.00 0.00 0.00 4.35
6502 6693 1.134220 TCCCACCAGTCACAAGAACAC 60.134 52.381 0.00 0.00 0.00 3.32
6567 6944 8.321716 GTGTCGTGATCTATAAACATGAACTTC 58.678 37.037 0.00 0.00 32.58 3.01
6572 6949 6.863275 AGTGTGTCGTGATCTATAAACATGA 58.137 36.000 0.00 0.00 0.00 3.07
6605 6982 5.105023 TCAAGCTCAGCAACTCAGATAGATT 60.105 40.000 0.00 0.00 0.00 2.40
6606 6983 4.405036 TCAAGCTCAGCAACTCAGATAGAT 59.595 41.667 0.00 0.00 0.00 1.98
6916 7295 8.276325 GCAGACAACAAGTACATATATAGCAAC 58.724 37.037 0.00 0.00 0.00 4.17
7109 7488 4.022068 CACTGAAGCACCATTGGTTAACAT 60.022 41.667 5.34 0.00 43.59 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.