Multiple sequence alignment - TraesCS2D01G093500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G093500 chr2D 100.000 4365 0 0 1 4365 44900391 44896027 0.000000e+00 8061.0
1 TraesCS2D01G093500 chr2D 96.825 189 5 1 1 188 102296323 102296511 9.110000e-82 315.0
2 TraesCS2D01G093500 chr2D 84.459 148 8 10 796 943 45091168 45091036 9.850000e-27 132.0
3 TraesCS2D01G093500 chr2D 85.586 111 5 3 3923 4033 44891268 44891169 5.970000e-19 106.0
4 TraesCS2D01G093500 chr2D 95.082 61 3 0 2032 2092 604277734 604277794 3.590000e-16 97.1
5 TraesCS2D01G093500 chr2B 89.694 3920 220 90 238 4041 71740028 71736177 0.000000e+00 4831.0
6 TraesCS2D01G093500 chr2B 94.050 437 23 3 1328 1761 72171632 72171196 0.000000e+00 660.0
7 TraesCS2D01G093500 chr2B 94.304 158 9 0 1116 1273 72171807 72171650 4.360000e-60 243.0
8 TraesCS2D01G093500 chr2B 85.106 141 8 4 797 937 72172066 72171939 9.850000e-27 132.0
9 TraesCS2D01G093500 chr2A 93.617 2256 110 16 1224 3457 48658582 48660825 0.000000e+00 3338.0
10 TraesCS2D01G093500 chr2A 83.702 362 38 15 262 609 48785552 48785198 5.450000e-84 322.0
11 TraesCS2D01G093500 chr2A 84.290 331 23 20 468 775 48657948 48658272 3.300000e-76 296.0
12 TraesCS2D01G093500 chr2A 77.491 582 63 42 3508 4038 48660830 48661394 1.990000e-73 287.0
13 TraesCS2D01G093500 chr2A 82.143 280 27 14 908 1171 48658294 48658566 7.350000e-53 219.0
14 TraesCS2D01G093500 chr2A 78.788 198 19 12 212 405 48657773 48657951 1.280000e-20 111.0
15 TraesCS2D01G093500 chr2A 100.000 46 0 0 3996 4041 48661587 48661632 7.780000e-13 86.1
16 TraesCS2D01G093500 chr5A 88.661 1217 72 28 747 1927 376846292 376845106 0.000000e+00 1423.0
17 TraesCS2D01G093500 chr5A 92.049 327 25 1 4039 4365 576587665 576587990 3.980000e-125 459.0
18 TraesCS2D01G093500 chr3A 92.058 831 45 10 1117 1927 435355491 435354662 0.000000e+00 1149.0
19 TraesCS2D01G093500 chr3A 86.726 339 24 12 747 1068 435355885 435355551 1.490000e-94 357.0
20 TraesCS2D01G093500 chr4B 79.769 1038 186 21 1997 3025 405053941 405054963 0.000000e+00 732.0
21 TraesCS2D01G093500 chr4D 79.748 1032 182 23 1997 3019 324894633 324895646 0.000000e+00 723.0
22 TraesCS2D01G093500 chr4D 92.073 328 26 0 4038 4365 301790027 301790354 3.080000e-126 462.0
23 TraesCS2D01G093500 chr4D 96.296 189 6 1 1 188 434278184 434278372 4.240000e-80 309.0
24 TraesCS2D01G093500 chr4D 96.296 189 6 1 1 188 479368430 479368618 4.240000e-80 309.0
25 TraesCS2D01G093500 chr4A 79.614 1035 189 20 2002 3028 146727513 146726493 0.000000e+00 723.0
26 TraesCS2D01G093500 chr4A 92.012 338 24 3 4030 4365 3340661 3340997 5.110000e-129 472.0
27 TraesCS2D01G093500 chr4A 92.049 327 26 0 4039 4365 137189577 137189903 1.110000e-125 460.0
28 TraesCS2D01G093500 chrUn 94.495 327 18 0 4039 4365 1907895 1908221 5.040000e-139 505.0
29 TraesCS2D01G093500 chr1A 93.578 327 21 0 4039 4365 300565064 300564738 5.070000e-134 488.0
30 TraesCS2D01G093500 chr1A 92.378 328 25 0 4038 4365 392498667 392498994 6.610000e-128 468.0
31 TraesCS2D01G093500 chr5D 93.293 328 21 1 4039 4365 79107664 79107337 2.360000e-132 483.0
32 TraesCS2D01G093500 chr5D 97.354 189 4 1 1 188 459084973 459085161 1.960000e-83 320.0
33 TraesCS2D01G093500 chr5D 96.825 189 5 1 1 188 384477377 384477565 9.110000e-82 315.0
34 TraesCS2D01G093500 chr7A 92.308 325 25 0 4041 4365 47044077 47043753 3.080000e-126 462.0
35 TraesCS2D01G093500 chr6D 96.825 189 5 1 1 188 30010109 30010297 9.110000e-82 315.0
36 TraesCS2D01G093500 chr6D 96.296 189 6 1 1 188 61727746 61727558 4.240000e-80 309.0
37 TraesCS2D01G093500 chr6D 96.296 189 6 1 1 188 310524515 310524703 4.240000e-80 309.0
38 TraesCS2D01G093500 chr1D 96.825 189 5 1 1 188 94047758 94047946 9.110000e-82 315.0
39 TraesCS2D01G093500 chr7D 88.360 189 20 2 2110 2298 613534621 613534435 4.390000e-55 226.0
40 TraesCS2D01G093500 chr3B 80.676 207 19 10 2032 2224 83312355 83312156 1.640000e-29 141.0
41 TraesCS2D01G093500 chr3D 96.552 58 2 0 2776 2833 126233188 126233245 3.590000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G093500 chr2D 44896027 44900391 4364 True 8061.00 8061 100.000000 1 4365 1 chr2D.!!$R2 4364
1 TraesCS2D01G093500 chr2B 71736177 71740028 3851 True 4831.00 4831 89.694000 238 4041 1 chr2B.!!$R1 3803
2 TraesCS2D01G093500 chr2B 72171196 72172066 870 True 345.00 660 91.153333 797 1761 3 chr2B.!!$R2 964
3 TraesCS2D01G093500 chr2A 48657773 48661632 3859 False 722.85 3338 86.054833 212 4041 6 chr2A.!!$F1 3829
4 TraesCS2D01G093500 chr5A 376845106 376846292 1186 True 1423.00 1423 88.661000 747 1927 1 chr5A.!!$R1 1180
5 TraesCS2D01G093500 chr3A 435354662 435355885 1223 True 753.00 1149 89.392000 747 1927 2 chr3A.!!$R1 1180
6 TraesCS2D01G093500 chr4B 405053941 405054963 1022 False 732.00 732 79.769000 1997 3025 1 chr4B.!!$F1 1028
7 TraesCS2D01G093500 chr4D 324894633 324895646 1013 False 723.00 723 79.748000 1997 3019 1 chr4D.!!$F2 1022
8 TraesCS2D01G093500 chr4A 146726493 146727513 1020 True 723.00 723 79.614000 2002 3028 1 chr4A.!!$R1 1026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85 F
427 463 0.036164 TGGCGGACAATTACAGTGCT 59.964 50.000 0.00 0.00 0.00 4.40 F
1109 1216 0.179171 CTCGCTTGCTTCAATGCTGG 60.179 55.000 0.00 0.00 0.00 4.85 F
1392 1538 1.140652 GGGAGAGCCTGAATTCTCTGG 59.859 57.143 7.05 7.56 39.57 3.86 F
2578 2740 1.298014 CCTGGACCACCTGAAGCTC 59.702 63.158 0.00 0.00 37.31 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1085 1192 0.109412 ATTGAAGCAAGCGAGCAAGC 60.109 50.000 6.21 0.61 36.85 4.01 R
1380 1526 1.065102 CGCCAATGCCAGAGAATTCAG 59.935 52.381 8.44 0.00 0.00 3.02 R
2920 3082 0.249657 GCAGCATCCGGTAGAGGAAG 60.250 60.000 0.00 0.00 44.50 3.46 R
3155 3320 1.021390 GGGATGTTGACACGCTCTGG 61.021 60.000 0.00 0.00 0.00 3.86 R
4046 4542 0.034756 TTTGCACAAGCCGCTAGAGA 59.965 50.000 0.00 0.00 41.13 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.613358 GCTGCACACTGACTTAGTAATTT 57.387 39.130 0.00 0.00 37.60 1.82
23 24 6.002062 GCTGCACACTGACTTAGTAATTTT 57.998 37.500 0.00 0.00 37.60 1.82
24 25 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
25 26 6.073003 GCTGCACACTGACTTAGTAATTTTCT 60.073 38.462 0.00 0.00 37.60 2.52
26 27 7.189693 TGCACACTGACTTAGTAATTTTCTG 57.810 36.000 0.00 0.00 37.60 3.02
27 28 6.989759 TGCACACTGACTTAGTAATTTTCTGA 59.010 34.615 0.00 0.00 37.60 3.27
28 29 7.661437 TGCACACTGACTTAGTAATTTTCTGAT 59.339 33.333 0.00 0.00 37.60 2.90
29 30 8.171840 GCACACTGACTTAGTAATTTTCTGATC 58.828 37.037 0.00 0.00 37.60 2.92
30 31 9.208022 CACACTGACTTAGTAATTTTCTGATCA 57.792 33.333 0.00 0.00 37.60 2.92
31 32 9.209175 ACACTGACTTAGTAATTTTCTGATCAC 57.791 33.333 0.00 0.00 37.60 3.06
32 33 9.208022 CACTGACTTAGTAATTTTCTGATCACA 57.792 33.333 0.00 0.00 37.60 3.58
33 34 9.209175 ACTGACTTAGTAATTTTCTGATCACAC 57.791 33.333 0.00 0.00 38.04 3.82
34 35 8.239681 TGACTTAGTAATTTTCTGATCACACG 57.760 34.615 0.00 0.00 0.00 4.49
35 36 7.330946 TGACTTAGTAATTTTCTGATCACACGG 59.669 37.037 0.00 0.00 0.00 4.94
36 37 6.594159 ACTTAGTAATTTTCTGATCACACGGG 59.406 38.462 0.00 0.00 0.00 5.28
37 38 4.906618 AGTAATTTTCTGATCACACGGGT 58.093 39.130 0.00 0.00 0.00 5.28
38 39 4.695455 AGTAATTTTCTGATCACACGGGTG 59.305 41.667 12.84 12.84 46.66 4.61
39 40 1.234821 TTTTCTGATCACACGGGTGC 58.765 50.000 14.50 0.00 44.87 5.01
40 41 0.948623 TTTCTGATCACACGGGTGCG 60.949 55.000 14.50 1.20 44.87 5.34
41 42 1.811645 TTCTGATCACACGGGTGCGA 61.812 55.000 14.50 3.83 44.87 5.10
42 43 2.048597 TGATCACACGGGTGCGAC 60.049 61.111 14.50 7.33 44.87 5.19
43 44 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
61 62 3.833645 CTGGCCGTGTAGCGCCTA 61.834 66.667 2.29 0.00 39.71 3.93
62 63 3.151710 TGGCCGTGTAGCGCCTAT 61.152 61.111 2.29 0.00 39.71 2.57
63 64 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
64 65 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
65 66 1.661821 GCCGTGTAGCGCCTATCTG 60.662 63.158 2.29 0.00 39.71 2.90
66 67 1.734137 CCGTGTAGCGCCTATCTGT 59.266 57.895 2.29 0.00 39.71 3.41
67 68 0.595053 CCGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 39.71 3.66
68 69 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
69 70 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
70 71 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
76 77 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
77 78 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
78 79 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
79 80 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
81 82 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
82 83 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
83 84 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
84 85 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
85 86 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
86 87 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
87 88 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
88 89 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
90 91 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
91 92 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
92 93 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
93 94 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
94 95 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
95 96 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
96 97 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
97 98 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
98 99 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
99 100 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
100 101 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
101 102 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
102 103 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
110 111 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
111 112 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
112 113 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
113 114 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
114 115 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
115 116 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
116 117 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
117 118 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
118 119 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
119 120 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
120 121 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
121 122 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
122 123 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
123 124 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
124 125 1.133407 GGCGTCACACAAAAAGGTCAA 59.867 47.619 0.00 0.00 0.00 3.18
125 126 2.182014 GCGTCACACAAAAAGGTCAAC 58.818 47.619 0.00 0.00 0.00 3.18
126 127 2.792749 CGTCACACAAAAAGGTCAACC 58.207 47.619 0.00 0.00 0.00 3.77
127 128 2.789779 CGTCACACAAAAAGGTCAACCG 60.790 50.000 0.00 0.00 42.08 4.44
128 129 2.162809 GTCACACAAAAAGGTCAACCGT 59.837 45.455 0.00 0.00 42.08 4.83
129 130 2.162608 TCACACAAAAAGGTCAACCGTG 59.837 45.455 3.51 3.51 42.08 4.94
130 131 2.094957 CACACAAAAAGGTCAACCGTGT 60.095 45.455 4.56 4.56 42.08 4.49
131 132 2.094957 ACACAAAAAGGTCAACCGTGTG 60.095 45.455 18.47 18.47 41.16 3.82
132 133 2.162608 CACAAAAAGGTCAACCGTGTGA 59.837 45.455 16.60 0.00 39.51 3.58
133 134 2.820787 ACAAAAAGGTCAACCGTGTGAA 59.179 40.909 6.20 0.00 42.08 3.18
134 135 3.256136 ACAAAAAGGTCAACCGTGTGAAA 59.744 39.130 6.20 0.00 42.08 2.69
135 136 4.081917 ACAAAAAGGTCAACCGTGTGAAAT 60.082 37.500 6.20 0.00 42.08 2.17
136 137 5.125739 ACAAAAAGGTCAACCGTGTGAAATA 59.874 36.000 6.20 0.00 42.08 1.40
137 138 5.432885 AAAAGGTCAACCGTGTGAAATAG 57.567 39.130 0.00 0.00 42.08 1.73
138 139 3.764237 AGGTCAACCGTGTGAAATAGT 57.236 42.857 0.00 0.00 42.08 2.12
139 140 4.081322 AGGTCAACCGTGTGAAATAGTT 57.919 40.909 0.00 0.00 42.08 2.24
140 141 4.457466 AGGTCAACCGTGTGAAATAGTTT 58.543 39.130 0.00 0.00 42.08 2.66
141 142 4.514066 AGGTCAACCGTGTGAAATAGTTTC 59.486 41.667 0.00 0.00 42.08 2.78
142 143 4.273969 GGTCAACCGTGTGAAATAGTTTCA 59.726 41.667 1.24 1.24 46.68 2.69
173 174 9.003658 AGTTTATTCTGTGATTTGATTTCGTCT 57.996 29.630 0.00 0.00 0.00 4.18
192 193 5.130519 CGTCTATACGGCAAATTTGATTCG 58.869 41.667 22.31 20.77 45.50 3.34
193 194 4.904154 GTCTATACGGCAAATTTGATTCGC 59.096 41.667 22.31 5.63 0.00 4.70
194 195 2.553079 TACGGCAAATTTGATTCGCC 57.447 45.000 22.31 13.74 39.45 5.54
196 197 3.416955 GGCAAATTTGATTCGCCGT 57.583 47.368 22.31 0.00 32.14 5.68
197 198 1.708822 GGCAAATTTGATTCGCCGTT 58.291 45.000 22.31 0.00 32.14 4.44
198 199 2.065512 GGCAAATTTGATTCGCCGTTT 58.934 42.857 22.31 0.00 32.14 3.60
199 200 2.092055 GGCAAATTTGATTCGCCGTTTC 59.908 45.455 22.31 0.00 32.14 2.78
200 201 2.986479 GCAAATTTGATTCGCCGTTTCT 59.014 40.909 22.31 0.00 0.00 2.52
201 202 4.162812 GCAAATTTGATTCGCCGTTTCTA 58.837 39.130 22.31 0.00 0.00 2.10
202 203 4.619336 GCAAATTTGATTCGCCGTTTCTAA 59.381 37.500 22.31 0.00 0.00 2.10
203 204 5.288472 GCAAATTTGATTCGCCGTTTCTAAT 59.712 36.000 22.31 0.00 0.00 1.73
204 205 6.685767 CAAATTTGATTCGCCGTTTCTAATG 58.314 36.000 13.08 0.00 0.00 1.90
205 206 3.398954 TTGATTCGCCGTTTCTAATGC 57.601 42.857 0.00 0.00 0.00 3.56
206 207 1.668751 TGATTCGCCGTTTCTAATGCC 59.331 47.619 0.00 0.00 0.00 4.40
207 208 1.940613 GATTCGCCGTTTCTAATGCCT 59.059 47.619 0.00 0.00 0.00 4.75
208 209 1.083489 TTCGCCGTTTCTAATGCCTG 58.917 50.000 0.00 0.00 0.00 4.85
209 210 0.742990 TCGCCGTTTCTAATGCCTGG 60.743 55.000 0.00 0.00 0.00 4.45
210 211 0.742990 CGCCGTTTCTAATGCCTGGA 60.743 55.000 0.00 0.00 0.00 3.86
230 231 6.432607 TGGATACAGTTTCGACTAGTACTG 57.567 41.667 18.01 18.01 46.17 2.74
241 242 3.448686 GACTAGTACTGGCGACGTACTA 58.551 50.000 22.82 22.82 43.64 1.82
265 267 2.125673 CTGTTGGCGAGGTACGGG 60.126 66.667 0.00 0.00 42.83 5.28
266 268 4.382320 TGTTGGCGAGGTACGGGC 62.382 66.667 0.00 0.00 42.83 6.13
309 311 2.663279 AAGAAAGTTTACTGTGCGCG 57.337 45.000 0.00 0.00 0.00 6.86
311 313 1.525619 AGAAAGTTTACTGTGCGCGTC 59.474 47.619 8.43 0.00 0.00 5.19
312 314 1.259507 GAAAGTTTACTGTGCGCGTCA 59.740 47.619 8.43 6.98 0.00 4.35
326 328 1.079819 CGTCACAGGTTCGGCTCAT 60.080 57.895 0.00 0.00 0.00 2.90
327 329 1.078759 CGTCACAGGTTCGGCTCATC 61.079 60.000 0.00 0.00 0.00 2.92
328 330 0.037326 GTCACAGGTTCGGCTCATCA 60.037 55.000 0.00 0.00 0.00 3.07
329 331 0.247460 TCACAGGTTCGGCTCATCAG 59.753 55.000 0.00 0.00 0.00 2.90
330 332 0.036952 CACAGGTTCGGCTCATCAGT 60.037 55.000 0.00 0.00 0.00 3.41
331 333 0.036952 ACAGGTTCGGCTCATCAGTG 60.037 55.000 0.00 0.00 0.00 3.66
332 334 1.078848 AGGTTCGGCTCATCAGTGC 60.079 57.895 0.00 0.00 0.00 4.40
333 335 1.078848 GGTTCGGCTCATCAGTGCT 60.079 57.895 0.00 0.00 34.76 4.40
334 336 1.364626 GGTTCGGCTCATCAGTGCTG 61.365 60.000 0.00 0.00 40.96 4.41
335 337 1.742880 TTCGGCTCATCAGTGCTGC 60.743 57.895 0.00 0.00 39.77 5.25
336 338 3.200593 CGGCTCATCAGTGCTGCC 61.201 66.667 0.00 0.00 39.58 4.85
337 339 3.200593 GGCTCATCAGTGCTGCCG 61.201 66.667 0.00 0.00 35.89 5.69
338 340 2.435586 GCTCATCAGTGCTGCCGT 60.436 61.111 0.00 0.00 0.00 5.68
339 341 2.747822 GCTCATCAGTGCTGCCGTG 61.748 63.158 0.00 0.00 0.00 4.94
340 342 1.079612 CTCATCAGTGCTGCCGTGA 60.080 57.895 0.00 0.00 0.00 4.35
341 343 1.079612 TCATCAGTGCTGCCGTGAG 60.080 57.895 0.00 0.00 0.00 3.51
367 400 1.381928 TACTCCTCTGCGGCGGTTAG 61.382 60.000 9.78 7.38 0.00 2.34
399 435 4.201679 CGTGGACGGCCGCTGATA 62.202 66.667 28.58 4.31 42.66 2.15
427 463 0.036164 TGGCGGACAATTACAGTGCT 59.964 50.000 0.00 0.00 0.00 4.40
428 464 1.276705 TGGCGGACAATTACAGTGCTA 59.723 47.619 0.00 0.00 0.00 3.49
438 474 5.048224 ACAATTACAGTGCTACGAGTACACT 60.048 40.000 0.00 10.48 45.25 3.55
442 478 1.200252 AGTGCTACGAGTACACTGCAG 59.800 52.381 13.48 13.48 42.83 4.41
471 507 4.424711 CCCTGCCCCGCTGCTAAA 62.425 66.667 0.00 0.00 0.00 1.85
472 508 2.124151 CCTGCCCCGCTGCTAAAT 60.124 61.111 0.00 0.00 0.00 1.40
474 510 1.750399 CTGCCCCGCTGCTAAATGT 60.750 57.895 0.00 0.00 0.00 2.71
479 515 1.680555 CCCCGCTGCTAAATGTGGTAA 60.681 52.381 0.00 0.00 32.37 2.85
494 530 5.748670 TGTGGTAAGTAATTACAGGCAGA 57.251 39.130 17.65 0.41 0.00 4.26
502 538 6.910536 AGTAATTACAGGCAGAAAATCTCG 57.089 37.500 17.65 0.00 0.00 4.04
515 551 6.403636 GCAGAAAATCTCGAGCAATAAAGGAA 60.404 38.462 7.81 0.00 32.27 3.36
518 554 8.743714 AGAAAATCTCGAGCAATAAAGGAAAAT 58.256 29.630 7.81 0.00 0.00 1.82
556 594 3.964875 GTGGGGCACACGCAACAG 61.965 66.667 3.09 0.00 44.24 3.16
559 597 4.030452 GGGCACACGCAACAGAGC 62.030 66.667 0.00 0.00 41.24 4.09
561 599 2.974698 GCACACGCAACAGAGCCT 60.975 61.111 0.00 0.00 38.36 4.58
565 617 1.739562 CACGCAACAGAGCCTCTCC 60.740 63.158 0.00 0.00 0.00 3.71
604 658 2.848679 TCAGTGGTGGGCAGCAGA 60.849 61.111 0.00 0.00 39.74 4.26
648 717 2.745812 GCACTAGTCTAGTAGTCGGCCT 60.746 54.545 12.26 0.00 37.23 5.19
661 730 4.820894 AGTCGGCCTAGTCACTATTTTT 57.179 40.909 0.00 0.00 0.00 1.94
745 818 2.800250 AGGCATCCAACAAAAGGAGAG 58.200 47.619 0.00 0.00 38.83 3.20
777 852 4.705519 CGCCCAAGCAAGCAACCG 62.706 66.667 0.00 0.00 39.83 4.44
947 1036 2.440430 TCTCTCTTCCTCCCCGCG 60.440 66.667 0.00 0.00 0.00 6.46
963 1052 3.617368 CGTAGCTAGCACCCCTGT 58.383 61.111 18.83 0.00 0.00 4.00
964 1053 1.898154 CGTAGCTAGCACCCCTGTT 59.102 57.895 18.83 0.00 0.00 3.16
965 1054 1.108776 CGTAGCTAGCACCCCTGTTA 58.891 55.000 18.83 0.00 0.00 2.41
974 1063 1.988406 ACCCCTGTTACGGAGCTCC 60.988 63.158 23.79 23.79 0.00 4.70
1084 1191 4.632538 CGAAAGGTTGGTGTTTCTTCTT 57.367 40.909 0.00 0.00 31.61 2.52
1085 1192 4.351192 CGAAAGGTTGGTGTTTCTTCTTG 58.649 43.478 0.00 0.00 31.61 3.02
1096 1203 1.597742 TTCTTCTTGCTTGCTCGCTT 58.402 45.000 0.00 0.00 0.00 4.68
1109 1216 0.179171 CTCGCTTGCTTCAATGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
1114 1226 1.243342 TTGCTTCAATGCTGGTCCGG 61.243 55.000 0.00 0.00 0.00 5.14
1255 1380 4.039245 GTCCATTCTCCATTGACGATCCTA 59.961 45.833 0.00 0.00 0.00 2.94
1306 1431 6.317140 GTCTGCTTCATTAATGTCCATTCTGA 59.683 38.462 14.97 6.79 32.50 3.27
1309 1443 6.829811 TGCTTCATTAATGTCCATTCTGATGA 59.170 34.615 14.97 12.04 35.16 2.92
1392 1538 1.140652 GGGAGAGCCTGAATTCTCTGG 59.859 57.143 7.05 7.56 39.57 3.86
1458 1604 3.499737 CGGCAGGTGATCAACGGC 61.500 66.667 25.48 25.48 0.00 5.68
1578 1724 2.512515 GTGCTGGAGATGTCGCCC 60.513 66.667 0.22 0.00 34.71 6.13
1723 1875 2.045242 CCACCTCCTCCTCGTCGA 60.045 66.667 0.00 0.00 0.00 4.20
1932 2084 2.684001 AACGGAATCACTCGCCATTA 57.316 45.000 0.00 0.00 0.00 1.90
1935 2087 1.472552 CGGAATCACTCGCCATTACCA 60.473 52.381 0.00 0.00 0.00 3.25
1936 2088 1.940613 GGAATCACTCGCCATTACCAC 59.059 52.381 0.00 0.00 0.00 4.16
1952 2113 2.435422 ACCACATCGAACATTGATGCA 58.565 42.857 7.37 0.00 45.61 3.96
2578 2740 1.298014 CCTGGACCACCTGAAGCTC 59.702 63.158 0.00 0.00 37.31 4.09
3128 3290 5.640732 TGCAACAACAAGAAGAAGAAGAAC 58.359 37.500 0.00 0.00 0.00 3.01
3129 3291 5.415701 TGCAACAACAAGAAGAAGAAGAACT 59.584 36.000 0.00 0.00 0.00 3.01
3181 3355 1.302431 TGTCAACATCCCGGTGCAG 60.302 57.895 0.00 0.00 0.00 4.41
3372 3546 0.527169 ATGAGCTGCTGATCGTCGTG 60.527 55.000 7.01 0.00 0.00 4.35
3426 3619 1.019805 GCGGGAAAACGGAGAGGAAG 61.020 60.000 0.00 0.00 0.00 3.46
3470 3663 3.019564 CCAAAAATTCGAGGAGCTGGAT 58.980 45.455 0.00 0.00 0.00 3.41
3478 3674 0.179097 GAGGAGCTGGATCGGTGAAC 60.179 60.000 0.00 0.00 0.00 3.18
3479 3675 0.904865 AGGAGCTGGATCGGTGAACA 60.905 55.000 0.00 0.00 0.00 3.18
3605 3804 7.474398 ACTAGTAAAGTTTTGGTTTCGTCTC 57.526 36.000 0.00 0.00 33.35 3.36
3608 3807 4.531659 AAAGTTTTGGTTTCGTCTCGAG 57.468 40.909 5.93 5.93 37.14 4.04
3612 3811 2.701073 TTGGTTTCGTCTCGAGTCTC 57.299 50.000 13.13 3.82 37.14 3.36
3613 3812 0.516001 TGGTTTCGTCTCGAGTCTCG 59.484 55.000 16.33 16.33 42.10 4.04
3638 3837 2.492012 GGATCATGCATGTCCTCTGTC 58.508 52.381 27.39 15.98 0.00 3.51
3639 3838 2.104451 GGATCATGCATGTCCTCTGTCT 59.896 50.000 27.39 7.65 0.00 3.41
3655 3854 2.896685 CTGTCTCTGTGAGTTCCTTCCT 59.103 50.000 0.00 0.00 0.00 3.36
3659 3858 3.325135 TCTCTGTGAGTTCCTTCCTTTCC 59.675 47.826 0.00 0.00 0.00 3.13
3685 3911 2.036346 TCATGGCGTGATCAGATCGATT 59.964 45.455 5.03 0.00 33.17 3.34
3720 3949 3.438088 CACGACGACGAGCTGTTC 58.562 61.111 15.32 0.00 42.66 3.18
3726 3955 1.914700 GACGACGAGCTGTTCATTCTC 59.085 52.381 0.00 0.00 0.00 2.87
3732 3961 2.481104 CGAGCTGTTCATTCTCCCTCTC 60.481 54.545 0.00 0.00 0.00 3.20
3742 3971 0.117140 TCTCCCTCTCCCTTGCTTGA 59.883 55.000 0.00 0.00 0.00 3.02
3823 4056 3.142838 CTTTCCGGGCTGCCCATG 61.143 66.667 35.22 25.38 45.83 3.66
3838 4071 1.474320 CCCATGCTTGCCATTTCCATG 60.474 52.381 0.00 0.00 34.55 3.66
3900 4139 1.502190 CGGCGCTCGCTCTATATGA 59.498 57.895 7.64 0.00 41.60 2.15
3902 4141 1.623359 GGCGCTCGCTCTATATGAAG 58.377 55.000 7.64 0.00 41.60 3.02
3928 4180 2.328099 GGCGGTTGCTGTTGAGGAG 61.328 63.158 0.00 0.00 42.25 3.69
3950 4202 1.956477 GATGAGCCGGCCATTATTTGT 59.044 47.619 26.15 0.00 0.00 2.83
3955 4207 2.438021 AGCCGGCCATTATTTGTAGAGA 59.562 45.455 26.15 0.00 0.00 3.10
4049 4545 6.401581 GCAGTTTAACTGTGTTAGAGCATCTC 60.402 42.308 23.67 1.18 45.70 2.75
4050 4546 6.870965 CAGTTTAACTGTGTTAGAGCATCTCT 59.129 38.462 16.22 1.71 40.91 3.10
4051 4547 8.029522 CAGTTTAACTGTGTTAGAGCATCTCTA 58.970 37.037 16.22 0.00 40.91 2.43
4059 4555 2.897780 GAGCATCTCTAGCGGCTTG 58.102 57.895 8.26 6.43 36.59 4.01
4060 4556 0.103937 GAGCATCTCTAGCGGCTTGT 59.896 55.000 8.26 0.00 36.59 3.16
4061 4557 0.179089 AGCATCTCTAGCGGCTTGTG 60.179 55.000 8.26 7.54 37.01 3.33
4062 4558 1.770085 GCATCTCTAGCGGCTTGTGC 61.770 60.000 8.26 8.75 38.76 4.57
4063 4559 0.460811 CATCTCTAGCGGCTTGTGCA 60.461 55.000 8.26 0.00 41.91 4.57
4064 4560 0.250234 ATCTCTAGCGGCTTGTGCAA 59.750 50.000 8.26 0.00 41.91 4.08
4065 4561 0.034756 TCTCTAGCGGCTTGTGCAAA 59.965 50.000 8.26 0.00 41.91 3.68
4066 4562 1.089920 CTCTAGCGGCTTGTGCAAAT 58.910 50.000 8.26 0.00 41.91 2.32
4067 4563 0.804364 TCTAGCGGCTTGTGCAAATG 59.196 50.000 8.26 0.00 41.91 2.32
4068 4564 0.179156 CTAGCGGCTTGTGCAAATGG 60.179 55.000 8.26 0.00 41.91 3.16
4069 4565 0.893270 TAGCGGCTTGTGCAAATGGT 60.893 50.000 8.26 0.00 41.91 3.55
4070 4566 2.023223 GCGGCTTGTGCAAATGGTG 61.023 57.895 0.00 0.00 41.91 4.17
4071 4567 1.373246 CGGCTTGTGCAAATGGTGG 60.373 57.895 0.00 0.00 41.91 4.61
4072 4568 1.747774 GGCTTGTGCAAATGGTGGT 59.252 52.632 0.00 0.00 41.91 4.16
4073 4569 0.319813 GGCTTGTGCAAATGGTGGTC 60.320 55.000 0.00 0.00 41.91 4.02
4074 4570 0.675633 GCTTGTGCAAATGGTGGTCT 59.324 50.000 0.00 0.00 39.41 3.85
4075 4571 1.885887 GCTTGTGCAAATGGTGGTCTA 59.114 47.619 0.00 0.00 39.41 2.59
4076 4572 2.351738 GCTTGTGCAAATGGTGGTCTAC 60.352 50.000 0.00 0.00 39.41 2.59
4077 4573 1.518325 TGTGCAAATGGTGGTCTACG 58.482 50.000 0.00 0.00 0.00 3.51
4078 4574 0.168128 GTGCAAATGGTGGTCTACGC 59.832 55.000 0.00 0.00 0.00 4.42
4089 4585 4.595198 GTGGTCTACGCCAAATTTAGAC 57.405 45.455 8.84 8.84 40.68 2.59
4090 4586 4.251268 GTGGTCTACGCCAAATTTAGACT 58.749 43.478 14.61 0.00 41.00 3.24
4091 4587 5.413499 GTGGTCTACGCCAAATTTAGACTA 58.587 41.667 14.61 8.41 41.00 2.59
4092 4588 5.290400 GTGGTCTACGCCAAATTTAGACTAC 59.710 44.000 14.79 14.79 43.03 2.73
4093 4589 4.807834 GGTCTACGCCAAATTTAGACTACC 59.192 45.833 14.61 4.16 41.00 3.18
4094 4590 5.413499 GTCTACGCCAAATTTAGACTACCA 58.587 41.667 9.75 0.00 39.03 3.25
4095 4591 5.290400 GTCTACGCCAAATTTAGACTACCAC 59.710 44.000 9.75 0.00 39.03 4.16
4096 4592 4.010667 ACGCCAAATTTAGACTACCACA 57.989 40.909 0.00 0.00 0.00 4.17
4097 4593 4.585879 ACGCCAAATTTAGACTACCACAT 58.414 39.130 0.00 0.00 0.00 3.21
4098 4594 4.394920 ACGCCAAATTTAGACTACCACATG 59.605 41.667 0.00 0.00 0.00 3.21
4099 4595 4.672409 GCCAAATTTAGACTACCACATGC 58.328 43.478 0.00 0.00 0.00 4.06
4100 4596 4.440112 GCCAAATTTAGACTACCACATGCC 60.440 45.833 0.00 0.00 0.00 4.40
4101 4597 4.704540 CCAAATTTAGACTACCACATGCCA 59.295 41.667 0.00 0.00 0.00 4.92
4102 4598 5.184864 CCAAATTTAGACTACCACATGCCAA 59.815 40.000 0.00 0.00 0.00 4.52
4103 4599 6.295011 CCAAATTTAGACTACCACATGCCAAA 60.295 38.462 0.00 0.00 0.00 3.28
4104 4600 6.909550 AATTTAGACTACCACATGCCAAAA 57.090 33.333 0.00 0.00 0.00 2.44
4105 4601 6.909550 ATTTAGACTACCACATGCCAAAAA 57.090 33.333 0.00 0.00 0.00 1.94
4130 4626 2.421424 CCTTCAGTGGCTTGTCTATTGC 59.579 50.000 0.00 0.00 0.00 3.56
4131 4627 1.725641 TCAGTGGCTTGTCTATTGCG 58.274 50.000 0.00 0.00 0.00 4.85
4132 4628 1.001974 TCAGTGGCTTGTCTATTGCGT 59.998 47.619 0.00 0.00 0.00 5.24
4133 4629 1.394917 CAGTGGCTTGTCTATTGCGTC 59.605 52.381 0.00 0.00 0.00 5.19
4134 4630 0.370273 GTGGCTTGTCTATTGCGTCG 59.630 55.000 0.00 0.00 0.00 5.12
4135 4631 0.037697 TGGCTTGTCTATTGCGTCGT 60.038 50.000 0.00 0.00 0.00 4.34
4136 4632 0.645868 GGCTTGTCTATTGCGTCGTC 59.354 55.000 0.00 0.00 0.00 4.20
4137 4633 1.630148 GCTTGTCTATTGCGTCGTCT 58.370 50.000 0.00 0.00 0.00 4.18
4138 4634 2.479049 GGCTTGTCTATTGCGTCGTCTA 60.479 50.000 0.00 0.00 0.00 2.59
4139 4635 3.176708 GCTTGTCTATTGCGTCGTCTAA 58.823 45.455 0.00 0.00 0.00 2.10
4140 4636 3.611113 GCTTGTCTATTGCGTCGTCTAAA 59.389 43.478 0.00 0.00 0.00 1.85
4141 4637 4.090930 GCTTGTCTATTGCGTCGTCTAAAA 59.909 41.667 0.00 0.00 0.00 1.52
4142 4638 5.220416 GCTTGTCTATTGCGTCGTCTAAAAT 60.220 40.000 0.00 0.00 0.00 1.82
4143 4639 6.672357 GCTTGTCTATTGCGTCGTCTAAAATT 60.672 38.462 0.00 0.00 0.00 1.82
4144 4640 6.715344 TGTCTATTGCGTCGTCTAAAATTT 57.285 33.333 0.00 0.00 0.00 1.82
4145 4641 7.815398 TGTCTATTGCGTCGTCTAAAATTTA 57.185 32.000 0.00 0.00 0.00 1.40
4146 4642 7.669098 TGTCTATTGCGTCGTCTAAAATTTAC 58.331 34.615 0.00 0.00 0.00 2.01
4147 4643 7.328982 TGTCTATTGCGTCGTCTAAAATTTACA 59.671 33.333 0.00 0.00 0.00 2.41
4148 4644 7.629845 GTCTATTGCGTCGTCTAAAATTTACAC 59.370 37.037 0.00 0.00 0.00 2.90
4149 4645 5.654317 TTGCGTCGTCTAAAATTTACACA 57.346 34.783 0.00 0.00 0.00 3.72
4150 4646 5.654317 TGCGTCGTCTAAAATTTACACAA 57.346 34.783 0.00 0.00 0.00 3.33
4151 4647 6.230849 TGCGTCGTCTAAAATTTACACAAT 57.769 33.333 0.00 0.00 0.00 2.71
4152 4648 6.074642 TGCGTCGTCTAAAATTTACACAATG 58.925 36.000 0.00 0.00 0.00 2.82
4153 4649 6.075280 GCGTCGTCTAAAATTTACACAATGT 58.925 36.000 0.00 0.00 0.00 2.71
4154 4650 6.245710 GCGTCGTCTAAAATTTACACAATGTC 59.754 38.462 0.00 0.00 0.00 3.06
4155 4651 6.735063 CGTCGTCTAAAATTTACACAATGTCC 59.265 38.462 0.00 0.00 0.00 4.02
4156 4652 7.569774 CGTCGTCTAAAATTTACACAATGTCCA 60.570 37.037 0.00 0.00 0.00 4.02
4157 4653 8.071368 GTCGTCTAAAATTTACACAATGTCCAA 58.929 33.333 0.00 0.00 0.00 3.53
4158 4654 8.071368 TCGTCTAAAATTTACACAATGTCCAAC 58.929 33.333 0.00 0.00 0.00 3.77
4159 4655 7.325097 CGTCTAAAATTTACACAATGTCCAACC 59.675 37.037 0.00 0.00 0.00 3.77
4160 4656 8.357402 GTCTAAAATTTACACAATGTCCAACCT 58.643 33.333 0.00 0.00 0.00 3.50
4161 4657 9.575868 TCTAAAATTTACACAATGTCCAACCTA 57.424 29.630 0.00 0.00 0.00 3.08
4162 4658 9.840427 CTAAAATTTACACAATGTCCAACCTAG 57.160 33.333 0.00 0.00 0.00 3.02
4163 4659 5.897377 ATTTACACAATGTCCAACCTAGC 57.103 39.130 0.00 0.00 0.00 3.42
4164 4660 4.634012 TTACACAATGTCCAACCTAGCT 57.366 40.909 0.00 0.00 0.00 3.32
4165 4661 5.748670 TTACACAATGTCCAACCTAGCTA 57.251 39.130 0.00 0.00 0.00 3.32
4166 4662 3.939066 ACACAATGTCCAACCTAGCTAC 58.061 45.455 0.00 0.00 0.00 3.58
4167 4663 3.270877 CACAATGTCCAACCTAGCTACC 58.729 50.000 0.00 0.00 0.00 3.18
4168 4664 2.238898 ACAATGTCCAACCTAGCTACCC 59.761 50.000 0.00 0.00 0.00 3.69
4169 4665 1.120530 ATGTCCAACCTAGCTACCCG 58.879 55.000 0.00 0.00 0.00 5.28
4170 4666 0.251922 TGTCCAACCTAGCTACCCGT 60.252 55.000 0.00 0.00 0.00 5.28
4171 4667 0.459078 GTCCAACCTAGCTACCCGTC 59.541 60.000 0.00 0.00 0.00 4.79
4172 4668 1.033746 TCCAACCTAGCTACCCGTCG 61.034 60.000 0.00 0.00 0.00 5.12
4173 4669 1.318158 CCAACCTAGCTACCCGTCGT 61.318 60.000 0.00 0.00 0.00 4.34
4174 4670 0.100146 CAACCTAGCTACCCGTCGTC 59.900 60.000 0.00 0.00 0.00 4.20
4175 4671 1.034292 AACCTAGCTACCCGTCGTCC 61.034 60.000 0.00 0.00 0.00 4.79
4176 4672 1.452651 CCTAGCTACCCGTCGTCCA 60.453 63.158 0.00 0.00 0.00 4.02
4177 4673 1.722636 CCTAGCTACCCGTCGTCCAC 61.723 65.000 0.00 0.00 0.00 4.02
4178 4674 1.002257 TAGCTACCCGTCGTCCACA 60.002 57.895 0.00 0.00 0.00 4.17
4179 4675 0.394762 TAGCTACCCGTCGTCCACAT 60.395 55.000 0.00 0.00 0.00 3.21
4180 4676 1.217244 GCTACCCGTCGTCCACATT 59.783 57.895 0.00 0.00 0.00 2.71
4181 4677 0.390735 GCTACCCGTCGTCCACATTT 60.391 55.000 0.00 0.00 0.00 2.32
4182 4678 1.355971 CTACCCGTCGTCCACATTTG 58.644 55.000 0.00 0.00 0.00 2.32
4183 4679 0.037139 TACCCGTCGTCCACATTTGG 60.037 55.000 0.00 0.00 45.56 3.28
4199 4695 3.529948 TGGACAACCAAGCCACAAT 57.470 47.368 0.00 0.00 43.91 2.71
4200 4696 1.039068 TGGACAACCAAGCCACAATG 58.961 50.000 0.00 0.00 43.91 2.82
4201 4697 1.039856 GGACAACCAAGCCACAATGT 58.960 50.000 0.00 0.00 35.97 2.71
4202 4698 1.000274 GGACAACCAAGCCACAATGTC 60.000 52.381 0.00 0.00 37.14 3.06
4203 4699 1.000274 GACAACCAAGCCACAATGTCC 60.000 52.381 0.00 0.00 32.96 4.02
4204 4700 1.039068 CAACCAAGCCACAATGTCCA 58.961 50.000 0.00 0.00 0.00 4.02
4205 4701 1.411977 CAACCAAGCCACAATGTCCAA 59.588 47.619 0.00 0.00 0.00 3.53
4206 4702 1.786937 ACCAAGCCACAATGTCCAAA 58.213 45.000 0.00 0.00 0.00 3.28
4207 4703 1.412343 ACCAAGCCACAATGTCCAAAC 59.588 47.619 0.00 0.00 0.00 2.93
4208 4704 1.411977 CCAAGCCACAATGTCCAAACA 59.588 47.619 0.00 0.00 40.38 2.83
4209 4705 2.158986 CCAAGCCACAATGTCCAAACAA 60.159 45.455 0.00 0.00 39.30 2.83
4210 4706 3.529533 CAAGCCACAATGTCCAAACAAA 58.470 40.909 0.00 0.00 39.30 2.83
4211 4707 3.902881 AGCCACAATGTCCAAACAAAA 57.097 38.095 0.00 0.00 39.30 2.44
4212 4708 4.213564 AGCCACAATGTCCAAACAAAAA 57.786 36.364 0.00 0.00 39.30 1.94
4238 4734 2.602738 CTCATGAGCTCGTCCATGC 58.397 57.895 10.38 0.00 39.82 4.06
4239 4735 0.179092 CTCATGAGCTCGTCCATGCA 60.179 55.000 10.38 0.00 39.82 3.96
4240 4736 0.460811 TCATGAGCTCGTCCATGCAC 60.461 55.000 5.16 0.00 39.82 4.57
4241 4737 1.153289 ATGAGCTCGTCCATGCACC 60.153 57.895 9.64 0.00 0.00 5.01
4242 4738 1.902765 ATGAGCTCGTCCATGCACCA 61.903 55.000 9.64 0.00 0.00 4.17
4243 4739 1.375908 GAGCTCGTCCATGCACCAA 60.376 57.895 0.00 0.00 0.00 3.67
4244 4740 0.745845 GAGCTCGTCCATGCACCAAT 60.746 55.000 0.00 0.00 0.00 3.16
4245 4741 0.322816 AGCTCGTCCATGCACCAATT 60.323 50.000 0.00 0.00 0.00 2.32
4246 4742 0.527565 GCTCGTCCATGCACCAATTT 59.472 50.000 0.00 0.00 0.00 1.82
4247 4743 1.733389 GCTCGTCCATGCACCAATTTG 60.733 52.381 0.00 0.00 0.00 2.32
4248 4744 0.887247 TCGTCCATGCACCAATTTGG 59.113 50.000 14.02 14.02 45.02 3.28
4249 4745 0.887247 CGTCCATGCACCAATTTGGA 59.113 50.000 22.19 0.20 40.96 3.53
4250 4746 1.135315 CGTCCATGCACCAATTTGGAG 60.135 52.381 22.19 15.06 40.96 3.86
4258 4754 3.681593 CACCAATTTGGAGCAATTGGA 57.318 42.857 25.19 0.00 44.62 3.53
4259 4755 3.592059 CACCAATTTGGAGCAATTGGAG 58.408 45.455 25.19 17.04 44.62 3.86
4260 4756 2.568509 ACCAATTTGGAGCAATTGGAGG 59.431 45.455 25.19 6.83 44.62 4.30
4261 4757 2.833338 CCAATTTGGAGCAATTGGAGGA 59.167 45.455 17.32 0.00 44.62 3.71
4262 4758 3.368739 CCAATTTGGAGCAATTGGAGGAC 60.369 47.826 17.32 0.00 44.62 3.85
4263 4759 1.533625 TTTGGAGCAATTGGAGGACG 58.466 50.000 7.72 0.00 0.00 4.79
4264 4760 0.400213 TTGGAGCAATTGGAGGACGT 59.600 50.000 7.72 0.00 0.00 4.34
4265 4761 0.036388 TGGAGCAATTGGAGGACGTC 60.036 55.000 7.13 7.13 0.00 4.34
4266 4762 1.084370 GGAGCAATTGGAGGACGTCG 61.084 60.000 9.92 0.00 0.00 5.12
4267 4763 1.079127 AGCAATTGGAGGACGTCGG 60.079 57.895 9.92 0.00 0.00 4.79
4268 4764 2.750888 GCAATTGGAGGACGTCGGC 61.751 63.158 9.92 3.48 0.00 5.54
4269 4765 1.375396 CAATTGGAGGACGTCGGCA 60.375 57.895 9.92 0.00 0.00 5.69
4270 4766 0.953471 CAATTGGAGGACGTCGGCAA 60.953 55.000 9.92 0.00 0.00 4.52
4271 4767 0.673644 AATTGGAGGACGTCGGCAAG 60.674 55.000 9.92 0.00 0.00 4.01
4272 4768 2.521958 ATTGGAGGACGTCGGCAAGG 62.522 60.000 9.92 0.00 0.00 3.61
4273 4769 3.379445 GGAGGACGTCGGCAAGGA 61.379 66.667 9.92 0.00 0.00 3.36
4274 4770 2.182030 GAGGACGTCGGCAAGGAG 59.818 66.667 9.92 0.00 0.00 3.69
4275 4771 3.358076 GAGGACGTCGGCAAGGAGG 62.358 68.421 9.92 0.00 0.00 4.30
4306 4802 4.008933 GCTGGTCACGGAGGCTGT 62.009 66.667 0.00 0.00 0.00 4.40
4307 4803 2.743718 CTGGTCACGGAGGCTGTT 59.256 61.111 0.00 0.00 0.00 3.16
4308 4804 1.669115 CTGGTCACGGAGGCTGTTG 60.669 63.158 0.00 0.00 0.00 3.33
4309 4805 3.050275 GGTCACGGAGGCTGTTGC 61.050 66.667 0.00 0.00 38.76 4.17
4310 4806 3.414700 GTCACGGAGGCTGTTGCG 61.415 66.667 0.00 0.00 40.82 4.85
4329 4825 4.899239 CTGGACCGCCGCCTCATC 62.899 72.222 0.00 0.00 36.79 2.92
4331 4827 4.899239 GGACCGCCGCCTCATCAG 62.899 72.222 0.00 0.00 0.00 2.90
4332 4828 4.899239 GACCGCCGCCTCATCAGG 62.899 72.222 0.00 0.00 43.82 3.86
4337 4833 3.473647 CCGCCTCATCAGGGCTGA 61.474 66.667 3.25 0.00 46.73 4.26
4338 4834 2.586245 CGCCTCATCAGGGCTGAA 59.414 61.111 3.25 0.00 46.73 3.02
4339 4835 1.817099 CGCCTCATCAGGGCTGAAC 60.817 63.158 3.25 0.00 46.73 3.18
4340 4836 1.452833 GCCTCATCAGGGCTGAACC 60.453 63.158 0.00 0.00 45.57 3.62
4341 4837 1.919600 GCCTCATCAGGGCTGAACCT 61.920 60.000 0.00 0.00 45.57 3.50
4347 4843 3.255032 AGGGCTGAACCTGTTGCT 58.745 55.556 0.00 0.00 40.04 3.91
4348 4844 2.463441 AGGGCTGAACCTGTTGCTA 58.537 52.632 0.00 0.00 40.04 3.49
4349 4845 0.995024 AGGGCTGAACCTGTTGCTAT 59.005 50.000 0.00 0.00 40.04 2.97
4350 4846 1.065126 AGGGCTGAACCTGTTGCTATC 60.065 52.381 0.00 0.00 40.04 2.08
4351 4847 1.009829 GGCTGAACCTGTTGCTATCG 58.990 55.000 0.00 0.00 34.51 2.92
4352 4848 1.676014 GGCTGAACCTGTTGCTATCGT 60.676 52.381 0.00 0.00 34.51 3.73
4353 4849 2.076863 GCTGAACCTGTTGCTATCGTT 58.923 47.619 0.00 0.00 0.00 3.85
4354 4850 2.484264 GCTGAACCTGTTGCTATCGTTT 59.516 45.455 0.00 0.00 0.00 3.60
4355 4851 3.682858 GCTGAACCTGTTGCTATCGTTTA 59.317 43.478 0.00 0.00 0.00 2.01
4356 4852 4.332819 GCTGAACCTGTTGCTATCGTTTAT 59.667 41.667 0.00 0.00 0.00 1.40
4357 4853 5.163754 GCTGAACCTGTTGCTATCGTTTATT 60.164 40.000 0.00 0.00 0.00 1.40
4358 4854 6.622896 GCTGAACCTGTTGCTATCGTTTATTT 60.623 38.462 0.00 0.00 0.00 1.40
4359 4855 6.837992 TGAACCTGTTGCTATCGTTTATTTC 58.162 36.000 0.00 0.00 0.00 2.17
4360 4856 6.653320 TGAACCTGTTGCTATCGTTTATTTCT 59.347 34.615 0.00 0.00 0.00 2.52
4361 4857 6.663944 ACCTGTTGCTATCGTTTATTTCTC 57.336 37.500 0.00 0.00 0.00 2.87
4362 4858 5.291128 ACCTGTTGCTATCGTTTATTTCTCG 59.709 40.000 0.00 0.00 0.00 4.04
4363 4859 5.291128 CCTGTTGCTATCGTTTATTTCTCGT 59.709 40.000 0.00 0.00 0.00 4.18
4364 4860 6.474427 CCTGTTGCTATCGTTTATTTCTCGTA 59.526 38.462 0.00 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
1 2 7.171508 TCAGAAAATTACTAAGTCAGTGTGCAG 59.828 37.037 0.00 0.00 38.24 4.41
2 3 6.989759 TCAGAAAATTACTAAGTCAGTGTGCA 59.010 34.615 0.00 0.00 38.24 4.57
3 4 7.421530 TCAGAAAATTACTAAGTCAGTGTGC 57.578 36.000 0.00 0.00 38.24 4.57
4 5 9.208022 TGATCAGAAAATTACTAAGTCAGTGTG 57.792 33.333 0.00 0.00 38.24 3.82
5 6 9.209175 GTGATCAGAAAATTACTAAGTCAGTGT 57.791 33.333 0.00 0.00 38.24 3.55
6 7 9.208022 TGTGATCAGAAAATTACTAAGTCAGTG 57.792 33.333 0.00 0.00 38.24 3.66
7 8 9.209175 GTGTGATCAGAAAATTACTAAGTCAGT 57.791 33.333 0.00 0.00 41.62 3.41
8 9 8.376203 CGTGTGATCAGAAAATTACTAAGTCAG 58.624 37.037 0.00 0.00 0.00 3.51
9 10 7.330946 CCGTGTGATCAGAAAATTACTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
10 11 7.201530 CCCGTGTGATCAGAAAATTACTAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
11 12 6.594159 CCCGTGTGATCAGAAAATTACTAAGT 59.406 38.462 0.00 0.00 0.00 2.24
12 13 6.594159 ACCCGTGTGATCAGAAAATTACTAAG 59.406 38.462 0.00 0.00 0.00 2.18
13 14 6.370442 CACCCGTGTGATCAGAAAATTACTAA 59.630 38.462 0.00 0.00 45.76 2.24
14 15 5.872617 CACCCGTGTGATCAGAAAATTACTA 59.127 40.000 0.00 0.00 45.76 1.82
15 16 4.695455 CACCCGTGTGATCAGAAAATTACT 59.305 41.667 0.00 0.00 45.76 2.24
16 17 4.671766 GCACCCGTGTGATCAGAAAATTAC 60.672 45.833 0.90 0.00 45.76 1.89
17 18 3.438781 GCACCCGTGTGATCAGAAAATTA 59.561 43.478 0.90 0.00 45.76 1.40
18 19 2.228822 GCACCCGTGTGATCAGAAAATT 59.771 45.455 0.90 0.00 45.76 1.82
19 20 1.812571 GCACCCGTGTGATCAGAAAAT 59.187 47.619 0.90 0.00 45.76 1.82
20 21 1.234821 GCACCCGTGTGATCAGAAAA 58.765 50.000 0.90 0.00 45.76 2.29
21 22 0.948623 CGCACCCGTGTGATCAGAAA 60.949 55.000 0.90 0.00 45.76 2.52
22 23 1.374125 CGCACCCGTGTGATCAGAA 60.374 57.895 0.90 0.00 45.76 3.02
23 24 2.261361 CGCACCCGTGTGATCAGA 59.739 61.111 0.90 0.00 45.76 3.27
24 25 2.261361 TCGCACCCGTGTGATCAG 59.739 61.111 0.90 0.00 45.76 2.90
48 49 0.595053 CACAGATAGGCGCTACACGG 60.595 60.000 7.64 0.58 43.93 4.94
50 51 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
51 52 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
52 53 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
58 59 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
59 60 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
60 61 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
61 62 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
62 63 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
64 65 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
65 66 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
66 67 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
67 68 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
68 69 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
69 70 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
70 71 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
71 72 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
72 73 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
73 74 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
74 75 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
75 76 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
76 77 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
77 78 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
78 79 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
79 80 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
80 81 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
81 82 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
82 83 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
83 84 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
84 85 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
85 86 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
93 94 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
94 95 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
95 96 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
96 97 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
97 98 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
98 99 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
99 100 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
100 101 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
101 102 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
102 103 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
103 104 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
104 105 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
105 106 2.182014 GTTGACCTTTTTGTGTGACGC 58.818 47.619 0.00 0.00 0.00 5.19
106 107 2.789779 CGGTTGACCTTTTTGTGTGACG 60.790 50.000 0.00 0.00 0.00 4.35
107 108 2.162809 ACGGTTGACCTTTTTGTGTGAC 59.837 45.455 0.00 0.00 0.00 3.67
108 109 2.162608 CACGGTTGACCTTTTTGTGTGA 59.837 45.455 0.00 0.00 0.00 3.58
109 110 2.094957 ACACGGTTGACCTTTTTGTGTG 60.095 45.455 9.13 5.61 35.34 3.82
110 111 2.094957 CACACGGTTGACCTTTTTGTGT 60.095 45.455 5.35 5.35 36.48 3.72
111 112 2.162608 TCACACGGTTGACCTTTTTGTG 59.837 45.455 11.66 11.66 34.38 3.33
112 113 2.438411 TCACACGGTTGACCTTTTTGT 58.562 42.857 0.00 0.00 0.00 2.83
113 114 3.495670 TTCACACGGTTGACCTTTTTG 57.504 42.857 0.00 0.00 0.00 2.44
114 115 4.729227 ATTTCACACGGTTGACCTTTTT 57.271 36.364 0.00 0.00 0.00 1.94
115 116 4.885325 ACTATTTCACACGGTTGACCTTTT 59.115 37.500 0.00 0.00 0.00 2.27
116 117 4.457466 ACTATTTCACACGGTTGACCTTT 58.543 39.130 0.00 0.00 0.00 3.11
117 118 4.081322 ACTATTTCACACGGTTGACCTT 57.919 40.909 0.00 0.00 0.00 3.50
118 119 3.764237 ACTATTTCACACGGTTGACCT 57.236 42.857 0.00 0.00 0.00 3.85
119 120 4.273969 TGAAACTATTTCACACGGTTGACC 59.726 41.667 0.00 0.00 44.21 4.02
120 121 5.412526 TGAAACTATTTCACACGGTTGAC 57.587 39.130 0.00 0.00 44.21 3.18
136 137 9.436957 AATCACAGAATAAACTATCGTGAAACT 57.563 29.630 0.00 0.00 34.93 2.66
139 140 9.430623 TCAAATCACAGAATAAACTATCGTGAA 57.569 29.630 0.00 0.00 34.93 3.18
140 141 8.996024 TCAAATCACAGAATAAACTATCGTGA 57.004 30.769 0.00 0.00 35.36 4.35
147 148 9.003658 AGACGAAATCAAATCACAGAATAAACT 57.996 29.630 0.00 0.00 0.00 2.66
170 171 4.904154 GCGAATCAAATTTGCCGTATAGAC 59.096 41.667 13.54 0.56 42.57 2.59
171 172 5.090652 GCGAATCAAATTTGCCGTATAGA 57.909 39.130 13.54 0.00 42.57 1.98
179 180 2.986479 AGAAACGGCGAATCAAATTTGC 59.014 40.909 16.62 1.00 46.62 3.68
180 181 6.685767 CATTAGAAACGGCGAATCAAATTTG 58.314 36.000 16.62 12.15 0.00 2.32
181 182 5.288472 GCATTAGAAACGGCGAATCAAATTT 59.712 36.000 16.62 0.49 0.00 1.82
182 183 4.798387 GCATTAGAAACGGCGAATCAAATT 59.202 37.500 16.62 0.00 0.00 1.82
183 184 4.351192 GCATTAGAAACGGCGAATCAAAT 58.649 39.130 16.62 4.79 0.00 2.32
184 185 3.426963 GGCATTAGAAACGGCGAATCAAA 60.427 43.478 16.62 2.25 0.00 2.69
185 186 2.096819 GGCATTAGAAACGGCGAATCAA 59.903 45.455 16.62 8.62 0.00 2.57
186 187 1.668751 GGCATTAGAAACGGCGAATCA 59.331 47.619 16.62 0.00 0.00 2.57
187 188 1.940613 AGGCATTAGAAACGGCGAATC 59.059 47.619 16.62 11.44 0.00 2.52
188 189 1.670811 CAGGCATTAGAAACGGCGAAT 59.329 47.619 16.62 0.07 0.00 3.34
189 190 1.083489 CAGGCATTAGAAACGGCGAA 58.917 50.000 16.62 0.00 0.00 4.70
190 191 0.742990 CCAGGCATTAGAAACGGCGA 60.743 55.000 16.62 0.00 0.00 5.54
191 192 0.742990 TCCAGGCATTAGAAACGGCG 60.743 55.000 4.80 4.80 0.00 6.46
192 193 1.680338 ATCCAGGCATTAGAAACGGC 58.320 50.000 0.00 0.00 0.00 5.68
193 194 3.804036 TGTATCCAGGCATTAGAAACGG 58.196 45.455 0.00 0.00 0.00 4.44
194 195 4.442706 ACTGTATCCAGGCATTAGAAACG 58.557 43.478 0.00 0.00 43.36 3.60
195 196 6.456988 CGAAACTGTATCCAGGCATTAGAAAC 60.457 42.308 0.00 0.00 43.36 2.78
196 197 5.584649 CGAAACTGTATCCAGGCATTAGAAA 59.415 40.000 0.00 0.00 43.36 2.52
197 198 5.105106 TCGAAACTGTATCCAGGCATTAGAA 60.105 40.000 0.00 0.00 43.36 2.10
198 199 4.404394 TCGAAACTGTATCCAGGCATTAGA 59.596 41.667 0.00 0.00 43.36 2.10
199 200 4.508124 GTCGAAACTGTATCCAGGCATTAG 59.492 45.833 0.00 0.00 43.36 1.73
200 201 4.161565 AGTCGAAACTGTATCCAGGCATTA 59.838 41.667 0.00 0.00 43.36 1.90
201 202 3.055094 AGTCGAAACTGTATCCAGGCATT 60.055 43.478 0.00 0.00 43.36 3.56
202 203 2.501723 AGTCGAAACTGTATCCAGGCAT 59.498 45.455 0.00 0.00 43.36 4.40
203 204 1.899814 AGTCGAAACTGTATCCAGGCA 59.100 47.619 0.00 0.00 43.36 4.75
204 205 2.674796 AGTCGAAACTGTATCCAGGC 57.325 50.000 0.00 0.00 43.36 4.85
205 206 4.985538 ACTAGTCGAAACTGTATCCAGG 57.014 45.455 0.00 0.00 43.36 4.45
206 207 6.458478 CCAGTACTAGTCGAAACTGTATCCAG 60.458 46.154 17.99 3.07 44.68 3.86
207 208 5.356190 CCAGTACTAGTCGAAACTGTATCCA 59.644 44.000 17.99 0.00 38.10 3.41
208 209 5.732810 GCCAGTACTAGTCGAAACTGTATCC 60.733 48.000 17.99 4.73 38.10 2.59
209 210 5.272397 GCCAGTACTAGTCGAAACTGTATC 58.728 45.833 17.99 7.11 38.10 2.24
210 211 4.201891 CGCCAGTACTAGTCGAAACTGTAT 60.202 45.833 17.99 0.00 38.10 2.29
215 216 2.513893 GTCGCCAGTACTAGTCGAAAC 58.486 52.381 0.00 0.00 0.00 2.78
230 231 1.012841 AGCACTAGTAGTACGTCGCC 58.987 55.000 1.57 0.00 0.00 5.54
241 242 1.293498 CCTCGCCAACAGCACTAGT 59.707 57.895 0.00 0.00 44.04 2.57
309 311 0.037326 TGATGAGCCGAACCTGTGAC 60.037 55.000 0.00 0.00 0.00 3.67
311 313 0.036952 ACTGATGAGCCGAACCTGTG 60.037 55.000 0.00 0.00 0.00 3.66
312 314 0.036952 CACTGATGAGCCGAACCTGT 60.037 55.000 0.00 0.00 0.00 4.00
323 325 1.079612 CTCACGGCAGCACTGATGA 60.080 57.895 0.81 1.18 0.00 2.92
336 338 2.341101 AGGAGTACCACGCCTCACG 61.341 63.158 0.00 0.00 45.61 4.35
337 339 3.696084 AGGAGTACCACGCCTCAC 58.304 61.111 0.00 0.00 45.61 3.51
341 343 2.184579 GCAGAGGAGTACCACGCC 59.815 66.667 0.00 0.00 38.44 5.68
342 344 2.202623 CGCAGAGGAGTACCACGC 60.203 66.667 0.00 0.00 38.94 5.34
343 345 2.490217 CCGCAGAGGAGTACCACG 59.510 66.667 0.00 0.00 45.00 4.94
367 400 1.741770 CACGTGGGCTAACAGGAGC 60.742 63.158 7.95 0.00 42.05 4.70
399 435 2.945080 ATTGTCCGCCATCATCAGAT 57.055 45.000 0.00 0.00 33.87 2.90
427 463 1.601419 GCCCCTGCAGTGTACTCGTA 61.601 60.000 13.81 0.00 37.47 3.43
428 464 2.943978 GCCCCTGCAGTGTACTCGT 61.944 63.158 13.81 0.00 37.47 4.18
458 494 2.774799 CCACATTTAGCAGCGGGGC 61.775 63.158 0.00 0.00 0.00 5.80
460 496 1.670811 CTTACCACATTTAGCAGCGGG 59.329 52.381 0.00 0.00 0.00 6.13
462 498 5.734855 ATTACTTACCACATTTAGCAGCG 57.265 39.130 0.00 0.00 0.00 5.18
463 499 7.981142 TGTAATTACTTACCACATTTAGCAGC 58.019 34.615 16.33 0.00 37.09 5.25
464 500 8.612619 CCTGTAATTACTTACCACATTTAGCAG 58.387 37.037 16.33 0.32 37.09 4.24
465 501 7.066525 GCCTGTAATTACTTACCACATTTAGCA 59.933 37.037 16.33 0.00 37.09 3.49
466 502 7.066525 TGCCTGTAATTACTTACCACATTTAGC 59.933 37.037 16.33 0.10 37.09 3.09
468 504 8.322828 TCTGCCTGTAATTACTTACCACATTTA 58.677 33.333 16.33 0.00 37.09 1.40
471 507 6.308015 TCTGCCTGTAATTACTTACCACAT 57.692 37.500 16.33 0.00 37.09 3.21
472 508 5.748670 TCTGCCTGTAATTACTTACCACA 57.251 39.130 16.33 5.86 37.09 4.17
474 510 8.107095 AGATTTTCTGCCTGTAATTACTTACCA 58.893 33.333 16.33 7.63 37.09 3.25
479 515 6.640518 TCGAGATTTTCTGCCTGTAATTACT 58.359 36.000 16.33 0.00 0.00 2.24
502 538 5.535030 ACGGGGATATTTTCCTTTATTGCTC 59.465 40.000 0.00 0.00 44.75 4.26
515 551 3.495100 GCTCAGTGATGACGGGGATATTT 60.495 47.826 0.00 0.00 0.00 1.40
518 554 1.040646 GCTCAGTGATGACGGGGATA 58.959 55.000 0.00 0.00 0.00 2.59
556 594 0.261696 AAGAGGAGAGGGAGAGGCTC 59.738 60.000 6.34 6.34 0.00 4.70
559 597 5.763876 TTTTTAAAGAGGAGAGGGAGAGG 57.236 43.478 0.00 0.00 0.00 3.69
669 738 1.203025 GCCTACCTAGCTAGCCAGGTA 60.203 57.143 31.80 31.80 43.48 3.08
670 739 0.470268 GCCTACCTAGCTAGCCAGGT 60.470 60.000 32.89 32.89 46.88 4.00
672 741 2.356992 GGCCTACCTAGCTAGCCAG 58.643 63.158 15.74 7.24 43.32 4.85
673 742 4.621269 GGCCTACCTAGCTAGCCA 57.379 61.111 15.74 0.00 43.32 4.75
745 818 1.078356 GGCGGACTCTTTCCTTCCC 60.078 63.158 0.00 0.00 43.25 3.97
810 885 2.115343 ACGGGAAAGAAAGAGATGGC 57.885 50.000 0.00 0.00 0.00 4.40
819 894 6.269077 TGGAGCTGAATATATACGGGAAAGAA 59.731 38.462 0.00 0.00 0.00 2.52
820 895 5.778241 TGGAGCTGAATATATACGGGAAAGA 59.222 40.000 0.00 0.00 0.00 2.52
821 896 6.037786 TGGAGCTGAATATATACGGGAAAG 57.962 41.667 0.00 0.00 0.00 2.62
822 897 6.620877 ATGGAGCTGAATATATACGGGAAA 57.379 37.500 0.00 0.00 0.00 3.13
823 898 6.620877 AATGGAGCTGAATATATACGGGAA 57.379 37.500 0.00 0.00 0.00 3.97
860 935 2.573915 GAGGGAGGAATCCTGTGACTTT 59.426 50.000 6.50 0.00 34.21 2.66
919 1003 0.759060 GAAGAGAGAGAGAGGGGGCC 60.759 65.000 0.00 0.00 0.00 5.80
947 1036 1.202382 CGTAACAGGGGTGCTAGCTAC 60.202 57.143 17.23 12.05 0.00 3.58
953 1042 2.955881 GCTCCGTAACAGGGGTGCT 61.956 63.158 0.00 0.00 39.19 4.40
956 1045 1.988406 GGAGCTCCGTAACAGGGGT 60.988 63.158 19.06 0.00 33.22 4.95
974 1063 4.459331 CCGCGCATCAACCAACCG 62.459 66.667 8.75 0.00 0.00 4.44
1063 1170 4.351192 CAAGAAGAAACACCAACCTTTCG 58.649 43.478 0.00 0.00 32.57 3.46
1076 1183 1.597742 AGCGAGCAAGCAAGAAGAAA 58.402 45.000 6.21 0.00 40.15 2.52
1078 1185 0.870393 CAAGCGAGCAAGCAAGAAGA 59.130 50.000 6.21 0.00 40.15 2.87
1080 1187 1.168407 AGCAAGCGAGCAAGCAAGAA 61.168 50.000 12.73 0.00 40.15 2.52
1084 1191 1.446516 TTGAAGCAAGCGAGCAAGCA 61.447 50.000 12.73 0.00 40.15 3.91
1085 1192 0.109412 ATTGAAGCAAGCGAGCAAGC 60.109 50.000 6.21 0.61 36.85 4.01
1096 1203 1.675310 CCGGACCAGCATTGAAGCA 60.675 57.895 0.00 0.00 36.85 3.91
1114 1226 4.394712 CCATCCCTATCCGCCGGC 62.395 72.222 19.07 19.07 0.00 6.13
1306 1431 1.926426 CTTTTCCGCCCCTCCCTCAT 61.926 60.000 0.00 0.00 0.00 2.90
1309 1443 2.204090 TCTTTTCCGCCCCTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
1380 1526 1.065102 CGCCAATGCCAGAGAATTCAG 59.935 52.381 8.44 0.00 0.00 3.02
1394 1540 2.822637 ATCAGATCCGGGCGCCAAT 61.823 57.895 30.85 18.39 0.00 3.16
1719 1871 2.486042 GAGGAGCAGGACGTCGAC 59.514 66.667 9.92 5.18 0.00 4.20
1932 2084 2.162208 GTGCATCAATGTTCGATGTGGT 59.838 45.455 0.00 0.00 41.91 4.16
1935 2087 4.478699 CAAAGTGCATCAATGTTCGATGT 58.521 39.130 0.00 0.00 41.91 3.06
1936 2088 3.302434 GCAAAGTGCATCAATGTTCGATG 59.698 43.478 0.00 0.00 44.26 3.84
1969 2131 3.507233 ACGAATTGGCAATGACAATCAGT 59.493 39.130 15.47 14.46 40.81 3.41
1977 2139 1.876799 ACACGAACGAATTGGCAATGA 59.123 42.857 14.47 0.00 0.00 2.57
2920 3082 0.249657 GCAGCATCCGGTAGAGGAAG 60.250 60.000 0.00 0.00 44.50 3.46
3101 3263 3.953612 TCTTCTTCTTGTTGTTGCATGGT 59.046 39.130 0.00 0.00 0.00 3.55
3155 3320 1.021390 GGGATGTTGACACGCTCTGG 61.021 60.000 0.00 0.00 0.00 3.86
3399 3592 3.129502 GTTTTCCCGCTACCCGCC 61.130 66.667 0.00 0.00 35.03 6.13
3402 3595 1.449070 CTCCGTTTTCCCGCTACCC 60.449 63.158 0.00 0.00 0.00 3.69
3403 3596 0.459759 CTCTCCGTTTTCCCGCTACC 60.460 60.000 0.00 0.00 0.00 3.18
3405 3598 0.612732 TCCTCTCCGTTTTCCCGCTA 60.613 55.000 0.00 0.00 0.00 4.26
3439 3632 4.317769 CCTCGAATTTTTGGTTTTGAACGC 60.318 41.667 0.00 0.00 0.00 4.84
3506 3702 1.810755 TCAGACTGTACACTACTGCCG 59.189 52.381 1.59 0.00 0.00 5.69
3561 3758 0.610687 ACTGCTACACTTGCTCCTCC 59.389 55.000 0.00 0.00 0.00 4.30
3562 3759 2.494073 AGTACTGCTACACTTGCTCCTC 59.506 50.000 0.00 0.00 0.00 3.71
3564 3761 3.444388 ACTAGTACTGCTACACTTGCTCC 59.556 47.826 5.39 0.00 0.00 4.70
3565 3762 4.705337 ACTAGTACTGCTACACTTGCTC 57.295 45.455 5.39 0.00 0.00 4.26
3566 3763 6.208994 ACTTTACTAGTACTGCTACACTTGCT 59.791 38.462 5.39 0.00 34.56 3.91
3567 3764 6.388278 ACTTTACTAGTACTGCTACACTTGC 58.612 40.000 5.39 0.00 34.56 4.01
3605 3804 1.001924 CATGATCCCAGTCGAGACTCG 60.002 57.143 18.91 18.91 40.20 4.18
3608 3807 0.461548 TGCATGATCCCAGTCGAGAC 59.538 55.000 0.00 0.00 0.00 3.36
3612 3811 1.224075 GACATGCATGATCCCAGTCG 58.776 55.000 32.75 2.55 0.00 4.18
3613 3812 1.142465 AGGACATGCATGATCCCAGTC 59.858 52.381 32.75 16.99 32.16 3.51
3614 3813 1.142465 GAGGACATGCATGATCCCAGT 59.858 52.381 32.75 17.86 32.16 4.00
3638 3837 3.558109 GGGAAAGGAAGGAACTCACAGAG 60.558 52.174 0.00 0.00 38.49 3.35
3639 3838 2.372172 GGGAAAGGAAGGAACTCACAGA 59.628 50.000 0.00 0.00 38.49 3.41
3685 3911 2.359169 GCACTCCACCTCCCGATCA 61.359 63.158 0.00 0.00 0.00 2.92
3720 3949 1.211456 AGCAAGGGAGAGGGAGAATG 58.789 55.000 0.00 0.00 0.00 2.67
3726 3955 1.077858 GCTCAAGCAAGGGAGAGGG 60.078 63.158 0.00 0.00 41.59 4.30
3732 3961 3.741476 GTGCGGCTCAAGCAAGGG 61.741 66.667 0.00 0.00 46.97 3.95
3754 3987 2.820037 GGAAAAGGCCGAGCGGAG 60.820 66.667 13.94 0.00 37.50 4.63
3762 3995 1.243902 TCATGTGAACGGAAAAGGCC 58.756 50.000 0.00 0.00 0.00 5.19
3772 4005 2.022195 AGCCAGCATCATCATGTGAAC 58.978 47.619 0.00 0.00 40.97 3.18
3773 4006 2.294979 GAGCCAGCATCATCATGTGAA 58.705 47.619 0.00 0.00 40.97 3.18
3823 4056 1.808891 GCATCCATGGAAATGGCAAGC 60.809 52.381 20.67 8.99 41.43 4.01
3838 4071 4.554036 GCCGGTCCTCCTGCATCC 62.554 72.222 1.90 0.00 42.31 3.51
3892 4131 1.541310 CCGCGGCCCCTTCATATAGA 61.541 60.000 14.67 0.00 0.00 1.98
3893 4132 1.079127 CCGCGGCCCCTTCATATAG 60.079 63.158 14.67 0.00 0.00 1.31
3894 4133 3.065306 CCGCGGCCCCTTCATATA 58.935 61.111 14.67 0.00 0.00 0.86
3895 4134 4.643387 GCCGCGGCCCCTTCATAT 62.643 66.667 39.89 0.00 34.56 1.78
3913 4155 1.808945 CATCACTCCTCAACAGCAACC 59.191 52.381 0.00 0.00 0.00 3.77
3924 4166 3.474570 GGCCGGCTCATCACTCCT 61.475 66.667 28.56 0.00 0.00 3.69
3925 4167 2.615227 AATGGCCGGCTCATCACTCC 62.615 60.000 28.56 6.48 0.00 3.85
3928 4180 1.609208 AATAATGGCCGGCTCATCAC 58.391 50.000 28.56 9.02 0.00 3.06
3950 4202 6.327365 TGTCCTTGAAAGATATGGCATCTCTA 59.673 38.462 14.86 0.00 0.00 2.43
3955 4207 4.079558 AGGTGTCCTTGAAAGATATGGCAT 60.080 41.667 4.88 4.88 0.00 4.40
4041 4537 0.103937 ACAAGCCGCTAGAGATGCTC 59.896 55.000 0.00 0.00 32.62 4.26
4042 4538 0.179089 CACAAGCCGCTAGAGATGCT 60.179 55.000 0.00 0.00 35.08 3.79
4043 4539 1.770085 GCACAAGCCGCTAGAGATGC 61.770 60.000 0.00 0.00 33.58 3.91
4044 4540 0.460811 TGCACAAGCCGCTAGAGATG 60.461 55.000 0.00 0.00 41.13 2.90
4045 4541 0.250234 TTGCACAAGCCGCTAGAGAT 59.750 50.000 0.00 0.00 41.13 2.75
4046 4542 0.034756 TTTGCACAAGCCGCTAGAGA 59.965 50.000 0.00 0.00 41.13 3.10
4047 4543 1.089920 ATTTGCACAAGCCGCTAGAG 58.910 50.000 0.00 0.00 41.13 2.43
4048 4544 0.804364 CATTTGCACAAGCCGCTAGA 59.196 50.000 0.00 0.00 41.13 2.43
4049 4545 0.179156 CCATTTGCACAAGCCGCTAG 60.179 55.000 0.00 0.00 41.13 3.42
4050 4546 0.893270 ACCATTTGCACAAGCCGCTA 60.893 50.000 0.00 0.00 41.13 4.26
4051 4547 2.202395 ACCATTTGCACAAGCCGCT 61.202 52.632 0.00 0.00 41.13 5.52
4052 4548 2.023223 CACCATTTGCACAAGCCGC 61.023 57.895 0.00 0.00 41.13 6.53
4053 4549 1.373246 CCACCATTTGCACAAGCCG 60.373 57.895 0.00 0.00 41.13 5.52
4054 4550 0.319813 GACCACCATTTGCACAAGCC 60.320 55.000 0.00 0.00 41.13 4.35
4055 4551 0.675633 AGACCACCATTTGCACAAGC 59.324 50.000 0.00 0.00 42.57 4.01
4056 4552 2.095768 CGTAGACCACCATTTGCACAAG 60.096 50.000 0.00 0.00 0.00 3.16
4057 4553 1.876799 CGTAGACCACCATTTGCACAA 59.123 47.619 0.00 0.00 0.00 3.33
4058 4554 1.518325 CGTAGACCACCATTTGCACA 58.482 50.000 0.00 0.00 0.00 4.57
4059 4555 0.168128 GCGTAGACCACCATTTGCAC 59.832 55.000 0.00 0.00 0.00 4.57
4060 4556 0.958382 GGCGTAGACCACCATTTGCA 60.958 55.000 0.00 0.00 0.00 4.08
4061 4557 0.958382 TGGCGTAGACCACCATTTGC 60.958 55.000 0.00 0.00 33.75 3.68
4062 4558 1.529226 TTGGCGTAGACCACCATTTG 58.471 50.000 0.00 0.00 40.19 2.32
4063 4559 2.279935 TTTGGCGTAGACCACCATTT 57.720 45.000 0.00 0.00 40.19 2.32
4064 4560 2.507407 ATTTGGCGTAGACCACCATT 57.493 45.000 0.00 0.00 40.19 3.16
4065 4561 2.507407 AATTTGGCGTAGACCACCAT 57.493 45.000 0.00 0.00 40.19 3.55
4066 4562 2.279935 AAATTTGGCGTAGACCACCA 57.720 45.000 0.00 0.00 40.19 4.17
4067 4563 3.373130 GTCTAAATTTGGCGTAGACCACC 59.627 47.826 0.00 0.00 40.19 4.61
4068 4564 4.251268 AGTCTAAATTTGGCGTAGACCAC 58.749 43.478 12.39 0.00 43.11 4.16
4069 4565 4.546829 AGTCTAAATTTGGCGTAGACCA 57.453 40.909 12.39 0.00 43.11 4.02
4070 4566 4.807834 GGTAGTCTAAATTTGGCGTAGACC 59.192 45.833 12.39 5.31 43.11 3.85
4071 4567 5.290400 GTGGTAGTCTAAATTTGGCGTAGAC 59.710 44.000 9.19 9.19 42.65 2.59
4072 4568 5.047164 TGTGGTAGTCTAAATTTGGCGTAGA 60.047 40.000 0.00 0.00 0.00 2.59
4073 4569 5.172934 TGTGGTAGTCTAAATTTGGCGTAG 58.827 41.667 0.00 0.00 0.00 3.51
4074 4570 5.149973 TGTGGTAGTCTAAATTTGGCGTA 57.850 39.130 0.00 0.00 0.00 4.42
4075 4571 4.010667 TGTGGTAGTCTAAATTTGGCGT 57.989 40.909 0.00 0.00 0.00 5.68
4076 4572 4.730613 GCATGTGGTAGTCTAAATTTGGCG 60.731 45.833 0.00 0.00 0.00 5.69
4077 4573 4.440112 GGCATGTGGTAGTCTAAATTTGGC 60.440 45.833 0.00 0.00 0.00 4.52
4078 4574 4.704540 TGGCATGTGGTAGTCTAAATTTGG 59.295 41.667 0.00 0.00 0.00 3.28
4079 4575 5.895636 TGGCATGTGGTAGTCTAAATTTG 57.104 39.130 0.00 0.00 0.00 2.32
4080 4576 6.909550 TTTGGCATGTGGTAGTCTAAATTT 57.090 33.333 0.00 0.00 0.00 1.82
4081 4577 6.909550 TTTTGGCATGTGGTAGTCTAAATT 57.090 33.333 0.00 0.00 0.00 1.82
4082 4578 6.909550 TTTTTGGCATGTGGTAGTCTAAAT 57.090 33.333 0.00 0.00 0.00 1.40
4109 4605 2.421424 GCAATAGACAAGCCACTGAAGG 59.579 50.000 0.00 0.00 0.00 3.46
4110 4606 2.094894 CGCAATAGACAAGCCACTGAAG 59.905 50.000 0.00 0.00 0.00 3.02
4111 4607 2.076100 CGCAATAGACAAGCCACTGAA 58.924 47.619 0.00 0.00 0.00 3.02
4112 4608 1.001974 ACGCAATAGACAAGCCACTGA 59.998 47.619 0.00 0.00 0.00 3.41
4113 4609 1.394917 GACGCAATAGACAAGCCACTG 59.605 52.381 0.00 0.00 0.00 3.66
4114 4610 1.726853 GACGCAATAGACAAGCCACT 58.273 50.000 0.00 0.00 0.00 4.00
4115 4611 0.370273 CGACGCAATAGACAAGCCAC 59.630 55.000 0.00 0.00 0.00 5.01
4116 4612 0.037697 ACGACGCAATAGACAAGCCA 60.038 50.000 0.00 0.00 0.00 4.75
4117 4613 0.645868 GACGACGCAATAGACAAGCC 59.354 55.000 0.00 0.00 0.00 4.35
4118 4614 1.630148 AGACGACGCAATAGACAAGC 58.370 50.000 0.00 0.00 0.00 4.01
4119 4615 5.756950 TTTTAGACGACGCAATAGACAAG 57.243 39.130 0.00 0.00 0.00 3.16
4120 4616 6.715344 AATTTTAGACGACGCAATAGACAA 57.285 33.333 0.00 0.00 0.00 3.18
4121 4617 6.715344 AAATTTTAGACGACGCAATAGACA 57.285 33.333 0.00 0.00 0.00 3.41
4122 4618 7.629845 GTGTAAATTTTAGACGACGCAATAGAC 59.370 37.037 0.00 0.00 0.00 2.59
4123 4619 7.328982 TGTGTAAATTTTAGACGACGCAATAGA 59.671 33.333 10.72 0.00 0.00 1.98
4124 4620 7.449827 TGTGTAAATTTTAGACGACGCAATAG 58.550 34.615 10.72 0.00 0.00 1.73
4125 4621 7.348808 TGTGTAAATTTTAGACGACGCAATA 57.651 32.000 10.72 0.00 0.00 1.90
4126 4622 6.230849 TGTGTAAATTTTAGACGACGCAAT 57.769 33.333 10.72 0.00 0.00 3.56
4127 4623 5.654317 TGTGTAAATTTTAGACGACGCAA 57.346 34.783 10.72 0.00 0.00 4.85
4128 4624 5.654317 TTGTGTAAATTTTAGACGACGCA 57.346 34.783 10.72 0.00 0.00 5.24
4129 4625 6.075280 ACATTGTGTAAATTTTAGACGACGC 58.925 36.000 8.18 0.00 0.00 5.19
4130 4626 6.735063 GGACATTGTGTAAATTTTAGACGACG 59.265 38.462 8.18 3.98 0.00 5.12
4131 4627 7.577979 TGGACATTGTGTAAATTTTAGACGAC 58.422 34.615 8.18 0.00 0.00 4.34
4132 4628 7.731882 TGGACATTGTGTAAATTTTAGACGA 57.268 32.000 8.39 8.39 0.00 4.20
4133 4629 7.325097 GGTTGGACATTGTGTAAATTTTAGACG 59.675 37.037 10.72 1.68 0.00 4.18
4134 4630 8.357402 AGGTTGGACATTGTGTAAATTTTAGAC 58.643 33.333 8.99 8.99 0.00 2.59
4135 4631 8.472007 AGGTTGGACATTGTGTAAATTTTAGA 57.528 30.769 0.00 0.00 0.00 2.10
4136 4632 9.840427 CTAGGTTGGACATTGTGTAAATTTTAG 57.160 33.333 0.00 0.00 0.00 1.85
4137 4633 8.301002 GCTAGGTTGGACATTGTGTAAATTTTA 58.699 33.333 0.00 0.00 0.00 1.52
4138 4634 7.015195 AGCTAGGTTGGACATTGTGTAAATTTT 59.985 33.333 0.00 0.00 0.00 1.82
4139 4635 6.493458 AGCTAGGTTGGACATTGTGTAAATTT 59.507 34.615 0.00 0.00 0.00 1.82
4140 4636 6.010219 AGCTAGGTTGGACATTGTGTAAATT 58.990 36.000 0.00 0.00 0.00 1.82
4141 4637 5.570320 AGCTAGGTTGGACATTGTGTAAAT 58.430 37.500 0.00 0.00 0.00 1.40
4142 4638 4.980573 AGCTAGGTTGGACATTGTGTAAA 58.019 39.130 0.00 0.00 0.00 2.01
4143 4639 4.634012 AGCTAGGTTGGACATTGTGTAA 57.366 40.909 0.00 0.00 0.00 2.41
4144 4640 4.081309 GGTAGCTAGGTTGGACATTGTGTA 60.081 45.833 0.00 0.00 0.00 2.90
4145 4641 3.307480 GGTAGCTAGGTTGGACATTGTGT 60.307 47.826 0.00 0.00 0.00 3.72
4146 4642 3.270877 GGTAGCTAGGTTGGACATTGTG 58.729 50.000 0.00 0.00 0.00 3.33
4147 4643 2.238898 GGGTAGCTAGGTTGGACATTGT 59.761 50.000 0.00 0.00 0.00 2.71
4148 4644 2.741878 CGGGTAGCTAGGTTGGACATTG 60.742 54.545 0.00 0.00 0.00 2.82
4149 4645 1.485066 CGGGTAGCTAGGTTGGACATT 59.515 52.381 0.00 0.00 0.00 2.71
4150 4646 1.120530 CGGGTAGCTAGGTTGGACAT 58.879 55.000 0.00 0.00 0.00 3.06
4151 4647 0.251922 ACGGGTAGCTAGGTTGGACA 60.252 55.000 0.00 0.00 0.00 4.02
4152 4648 0.459078 GACGGGTAGCTAGGTTGGAC 59.541 60.000 0.00 0.00 0.00 4.02
4153 4649 1.033746 CGACGGGTAGCTAGGTTGGA 61.034 60.000 0.00 0.00 0.00 3.53
4154 4650 1.318158 ACGACGGGTAGCTAGGTTGG 61.318 60.000 0.00 0.00 0.00 3.77
4155 4651 0.100146 GACGACGGGTAGCTAGGTTG 59.900 60.000 0.00 0.00 0.00 3.77
4156 4652 1.034292 GGACGACGGGTAGCTAGGTT 61.034 60.000 0.00 0.00 0.00 3.50
4157 4653 1.452833 GGACGACGGGTAGCTAGGT 60.453 63.158 0.00 0.00 0.00 3.08
4158 4654 1.452651 TGGACGACGGGTAGCTAGG 60.453 63.158 0.00 0.00 0.00 3.02
4159 4655 1.028330 TGTGGACGACGGGTAGCTAG 61.028 60.000 0.00 0.00 0.00 3.42
4160 4656 0.394762 ATGTGGACGACGGGTAGCTA 60.395 55.000 0.00 0.00 0.00 3.32
4161 4657 1.255667 AATGTGGACGACGGGTAGCT 61.256 55.000 0.00 0.00 0.00 3.32
4162 4658 0.390735 AAATGTGGACGACGGGTAGC 60.391 55.000 0.00 0.00 0.00 3.58
4163 4659 1.355971 CAAATGTGGACGACGGGTAG 58.644 55.000 0.00 0.00 0.00 3.18
4164 4660 3.518381 CAAATGTGGACGACGGGTA 57.482 52.632 0.00 0.00 0.00 3.69
4165 4661 4.371975 CAAATGTGGACGACGGGT 57.628 55.556 0.00 0.00 0.00 5.28
4181 4677 1.039068 CATTGTGGCTTGGTTGTCCA 58.961 50.000 0.00 0.00 42.66 4.02
4182 4678 1.000274 GACATTGTGGCTTGGTTGTCC 60.000 52.381 0.00 0.00 0.00 4.02
4183 4679 1.000274 GGACATTGTGGCTTGGTTGTC 60.000 52.381 0.00 0.00 34.24 3.18
4184 4680 1.039856 GGACATTGTGGCTTGGTTGT 58.960 50.000 0.00 0.00 0.00 3.32
4185 4681 1.039068 TGGACATTGTGGCTTGGTTG 58.961 50.000 0.00 0.00 0.00 3.77
4186 4682 1.786937 TTGGACATTGTGGCTTGGTT 58.213 45.000 0.00 0.00 0.00 3.67
4187 4683 1.412343 GTTTGGACATTGTGGCTTGGT 59.588 47.619 0.00 0.00 0.00 3.67
4188 4684 1.411977 TGTTTGGACATTGTGGCTTGG 59.588 47.619 0.00 0.00 0.00 3.61
4189 4685 2.886862 TGTTTGGACATTGTGGCTTG 57.113 45.000 0.00 0.00 0.00 4.01
4190 4686 3.902881 TTTGTTTGGACATTGTGGCTT 57.097 38.095 0.00 0.00 35.29 4.35
4191 4687 3.902881 TTTTGTTTGGACATTGTGGCT 57.097 38.095 0.00 0.00 35.29 4.75
4220 4716 0.179092 TGCATGGACGAGCTCATGAG 60.179 55.000 18.84 18.84 42.25 2.90
4221 4717 0.460811 GTGCATGGACGAGCTCATGA 60.461 55.000 15.40 0.00 42.25 3.07
4222 4718 1.434622 GGTGCATGGACGAGCTCATG 61.435 60.000 15.40 11.41 42.47 3.07
4223 4719 1.153289 GGTGCATGGACGAGCTCAT 60.153 57.895 15.40 0.00 0.00 2.90
4224 4720 2.110757 TTGGTGCATGGACGAGCTCA 62.111 55.000 15.40 0.06 0.00 4.26
4225 4721 0.745845 ATTGGTGCATGGACGAGCTC 60.746 55.000 11.52 2.73 0.00 4.09
4226 4722 0.322816 AATTGGTGCATGGACGAGCT 60.323 50.000 11.52 0.00 0.00 4.09
4227 4723 0.527565 AAATTGGTGCATGGACGAGC 59.472 50.000 11.52 0.00 0.00 5.03
4228 4724 1.135315 CCAAATTGGTGCATGGACGAG 60.135 52.381 11.52 0.00 34.82 4.18
4229 4725 0.887247 CCAAATTGGTGCATGGACGA 59.113 50.000 11.52 4.35 34.82 4.20
4230 4726 0.887247 TCCAAATTGGTGCATGGACG 59.113 50.000 12.28 0.00 39.03 4.79
4231 4727 2.660189 CTCCAAATTGGTGCATGGAC 57.340 50.000 12.28 9.16 39.03 4.02
4241 4737 3.674138 CGTCCTCCAATTGCTCCAAATTG 60.674 47.826 0.00 3.25 43.94 2.32
4242 4738 2.493278 CGTCCTCCAATTGCTCCAAATT 59.507 45.455 0.00 0.00 0.00 1.82
4243 4739 2.094675 CGTCCTCCAATTGCTCCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
4244 4740 1.202879 ACGTCCTCCAATTGCTCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
4245 4741 0.400213 ACGTCCTCCAATTGCTCCAA 59.600 50.000 0.00 0.00 0.00 3.53
4246 4742 0.036388 GACGTCCTCCAATTGCTCCA 60.036 55.000 3.51 0.00 0.00 3.86
4247 4743 1.084370 CGACGTCCTCCAATTGCTCC 61.084 60.000 10.58 0.00 0.00 4.70
4248 4744 1.084370 CCGACGTCCTCCAATTGCTC 61.084 60.000 10.58 0.00 0.00 4.26
4249 4745 1.079127 CCGACGTCCTCCAATTGCT 60.079 57.895 10.58 0.00 0.00 3.91
4250 4746 2.750888 GCCGACGTCCTCCAATTGC 61.751 63.158 10.58 0.00 0.00 3.56
4251 4747 0.953471 TTGCCGACGTCCTCCAATTG 60.953 55.000 10.58 0.00 0.00 2.32
4252 4748 0.673644 CTTGCCGACGTCCTCCAATT 60.674 55.000 10.58 0.00 0.00 2.32
4253 4749 1.079127 CTTGCCGACGTCCTCCAAT 60.079 57.895 10.58 0.00 0.00 3.16
4254 4750 2.342279 CTTGCCGACGTCCTCCAA 59.658 61.111 10.58 9.64 0.00 3.53
4255 4751 3.691342 CCTTGCCGACGTCCTCCA 61.691 66.667 10.58 1.48 0.00 3.86
4256 4752 3.358076 CTCCTTGCCGACGTCCTCC 62.358 68.421 10.58 0.00 0.00 4.30
4257 4753 2.182030 CTCCTTGCCGACGTCCTC 59.818 66.667 10.58 2.17 0.00 3.71
4258 4754 3.382832 CCTCCTTGCCGACGTCCT 61.383 66.667 10.58 0.00 0.00 3.85
4289 4785 3.537206 AACAGCCTCCGTGACCAGC 62.537 63.158 0.00 0.00 0.00 4.85
4290 4786 1.669115 CAACAGCCTCCGTGACCAG 60.669 63.158 0.00 0.00 0.00 4.00
4291 4787 2.425592 CAACAGCCTCCGTGACCA 59.574 61.111 0.00 0.00 0.00 4.02
4292 4788 3.050275 GCAACAGCCTCCGTGACC 61.050 66.667 0.00 0.00 0.00 4.02
4293 4789 3.414700 CGCAACAGCCTCCGTGAC 61.415 66.667 0.00 0.00 0.00 3.67
4312 4808 4.899239 GATGAGGCGGCGGTCCAG 62.899 72.222 9.78 0.00 0.00 3.86
4314 4810 4.899239 CTGATGAGGCGGCGGTCC 62.899 72.222 9.78 1.33 0.00 4.46
4315 4811 4.899239 CCTGATGAGGCGGCGGTC 62.899 72.222 9.78 3.78 30.52 4.79
4323 4819 2.305095 AGGTTCAGCCCTGATGAGG 58.695 57.895 0.00 0.00 39.64 3.86
4330 4826 0.995024 ATAGCAACAGGTTCAGCCCT 59.005 50.000 0.00 0.00 38.26 5.19
4331 4827 1.383523 GATAGCAACAGGTTCAGCCC 58.616 55.000 0.00 0.00 38.26 5.19
4332 4828 1.009829 CGATAGCAACAGGTTCAGCC 58.990 55.000 0.00 0.00 37.58 4.85
4333 4829 1.726853 ACGATAGCAACAGGTTCAGC 58.273 50.000 0.00 0.00 42.67 4.26
4334 4830 6.422776 AATAAACGATAGCAACAGGTTCAG 57.577 37.500 0.00 0.00 42.67 3.02
4335 4831 6.653320 AGAAATAAACGATAGCAACAGGTTCA 59.347 34.615 0.00 0.00 42.67 3.18
4336 4832 7.073342 AGAAATAAACGATAGCAACAGGTTC 57.927 36.000 0.00 0.00 42.67 3.62
4337 4833 6.183360 CGAGAAATAAACGATAGCAACAGGTT 60.183 38.462 0.00 0.00 42.67 3.50
4338 4834 5.291128 CGAGAAATAAACGATAGCAACAGGT 59.709 40.000 0.00 0.00 42.67 4.00
4339 4835 5.291128 ACGAGAAATAAACGATAGCAACAGG 59.709 40.000 0.00 0.00 42.67 4.00
4340 4836 6.332504 ACGAGAAATAAACGATAGCAACAG 57.667 37.500 0.00 0.00 42.67 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.