Multiple sequence alignment - TraesCS2D01G093000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G093000 chr2D 100.000 3143 0 0 1 3143 44338731 44341873 0.000000e+00 5805.0
1 TraesCS2D01G093000 chr2D 89.939 1302 85 23 900 2174 44470296 44469014 0.000000e+00 1637.0
2 TraesCS2D01G093000 chr2D 86.215 1313 134 28 860 2143 48028480 48027186 0.000000e+00 1378.0
3 TraesCS2D01G093000 chr2D 94.554 202 11 0 97 298 284560175 284559974 2.350000e-81 313.0
4 TraesCS2D01G093000 chr2D 78.967 271 38 8 2612 2865 44468381 44468113 1.940000e-37 167.0
5 TraesCS2D01G093000 chr2D 92.174 115 9 0 3025 3139 44459817 44459931 2.510000e-36 163.0
6 TraesCS2D01G093000 chr2D 92.035 113 8 1 2753 2865 44459288 44459399 1.170000e-34 158.0
7 TraesCS2D01G093000 chr2D 77.119 354 25 32 2170 2479 44468833 44468492 1.510000e-33 154.0
8 TraesCS2D01G093000 chr2D 92.857 42 3 0 2659 2700 44371653 44371694 9.410000e-06 62.1
9 TraesCS2D01G093000 chr2B 89.406 1718 122 32 794 2499 71244529 71242860 0.000000e+00 2109.0
10 TraesCS2D01G093000 chr2B 88.440 1436 113 23 794 2207 520970248 520968844 0.000000e+00 1683.0
11 TraesCS2D01G093000 chr2B 86.267 1602 143 41 794 2347 71293927 71292355 0.000000e+00 1668.0
12 TraesCS2D01G093000 chr2B 90.250 1200 67 19 1320 2499 70837217 70838386 0.000000e+00 1522.0
13 TraesCS2D01G093000 chr2B 89.320 618 37 11 717 1323 70821538 70822137 0.000000e+00 749.0
14 TraesCS2D01G093000 chr2B 92.273 220 16 1 79 298 681818151 681818369 8.460000e-81 311.0
15 TraesCS2D01G093000 chr2B 88.517 209 24 0 2612 2820 520968127 520967919 1.450000e-63 254.0
16 TraesCS2D01G093000 chr2B 85.088 228 15 9 2931 3143 520967795 520967572 6.830000e-52 215.0
17 TraesCS2D01G093000 chr2B 82.895 228 18 9 2927 3137 70839176 70839399 5.350000e-43 185.0
18 TraesCS2D01G093000 chr2B 84.270 178 16 6 2614 2779 70838655 70838832 2.510000e-36 163.0
19 TraesCS2D01G093000 chr2A 88.805 1590 119 25 794 2351 48347704 48346142 0.000000e+00 1895.0
20 TraesCS2D01G093000 chr2A 86.818 1760 125 51 794 2495 48249724 48251434 0.000000e+00 1866.0
21 TraesCS2D01G093000 chr2A 85.225 1401 146 35 793 2143 51040622 51042011 0.000000e+00 1384.0
22 TraesCS2D01G093000 chr2A 95.258 485 23 0 1395 1879 48246384 48246868 0.000000e+00 769.0
23 TraesCS2D01G093000 chr2A 86.743 611 38 17 707 1314 48224080 48224650 9.510000e-180 640.0
24 TraesCS2D01G093000 chr2A 91.393 244 20 1 2622 2865 48251769 48252011 1.810000e-87 333.0
25 TraesCS2D01G093000 chr2A 81.533 287 18 10 2878 3139 48252070 48252346 1.480000e-48 204.0
26 TraesCS2D01G093000 chr2A 82.937 252 17 15 2908 3143 48332807 48332566 1.480000e-48 204.0
27 TraesCS2D01G093000 chr2A 78.922 204 22 12 2620 2823 48345787 48345605 5.510000e-23 119.0
28 TraesCS2D01G093000 chr7D 95.050 202 10 0 97 298 430112083 430112284 5.060000e-83 318.0
29 TraesCS2D01G093000 chr7A 94.634 205 11 0 94 298 219906881 219906677 5.060000e-83 318.0
30 TraesCS2D01G093000 chr6D 94.581 203 11 0 96 298 18708846 18709048 6.540000e-82 315.0
31 TraesCS2D01G093000 chr5D 94.581 203 11 0 96 298 115924031 115924233 6.540000e-82 315.0
32 TraesCS2D01G093000 chr5D 94.554 202 11 0 97 298 402761896 402761695 2.350000e-81 313.0
33 TraesCS2D01G093000 chr7B 94.089 203 12 0 96 298 732427964 732428166 3.040000e-80 309.0
34 TraesCS2D01G093000 chr1B 93.659 205 13 0 94 298 67414447 67414243 1.090000e-79 307.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G093000 chr2D 44338731 44341873 3142 False 5805.000000 5805 100.000000 1 3143 1 chr2D.!!$F1 3142
1 TraesCS2D01G093000 chr2D 48027186 48028480 1294 True 1378.000000 1378 86.215000 860 2143 1 chr2D.!!$R1 1283
2 TraesCS2D01G093000 chr2D 44468113 44470296 2183 True 652.666667 1637 82.008333 900 2865 3 chr2D.!!$R3 1965
3 TraesCS2D01G093000 chr2B 71242860 71244529 1669 True 2109.000000 2109 89.406000 794 2499 1 chr2B.!!$R1 1705
4 TraesCS2D01G093000 chr2B 71292355 71293927 1572 True 1668.000000 1668 86.267000 794 2347 1 chr2B.!!$R2 1553
5 TraesCS2D01G093000 chr2B 70821538 70822137 599 False 749.000000 749 89.320000 717 1323 1 chr2B.!!$F1 606
6 TraesCS2D01G093000 chr2B 520967572 520970248 2676 True 717.333333 1683 87.348333 794 3143 3 chr2B.!!$R3 2349
7 TraesCS2D01G093000 chr2B 70837217 70839399 2182 False 623.333333 1522 85.805000 1320 3137 3 chr2B.!!$F3 1817
8 TraesCS2D01G093000 chr2A 51040622 51042011 1389 False 1384.000000 1384 85.225000 793 2143 1 chr2A.!!$F2 1350
9 TraesCS2D01G093000 chr2A 48345605 48347704 2099 True 1007.000000 1895 83.863500 794 2823 2 chr2A.!!$R2 2029
10 TraesCS2D01G093000 chr2A 48246384 48252346 5962 False 793.000000 1866 88.750500 794 3139 4 chr2A.!!$F3 2345
11 TraesCS2D01G093000 chr2A 48224080 48224650 570 False 640.000000 640 86.743000 707 1314 1 chr2A.!!$F1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.035881 CTGCCTCCTGCTTCAGTTGA 59.964 55.0 0.0 0.0 42.0 3.18 F
463 464 0.036388 ATGTCACGCCCTGTCGAAAT 60.036 50.0 0.0 0.0 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1046 3657 0.243095 GAGGAAAGTCACGTACGCCT 59.757 55.0 16.72 11.69 33.50 5.52 R
2329 5616 0.037326 ACATGGTGTACACGCCTCTG 60.037 55.0 19.41 13.34 46.36 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.823976 GTAGCTAGACCCCACCTGC 59.176 63.158 0.00 0.00 0.00 4.85
19 20 0.976073 GTAGCTAGACCCCACCTGCA 60.976 60.000 0.00 0.00 0.00 4.41
20 21 0.687757 TAGCTAGACCCCACCTGCAG 60.688 60.000 6.78 6.78 0.00 4.41
21 22 3.036429 GCTAGACCCCACCTGCAGG 62.036 68.421 31.60 31.60 42.17 4.85
32 33 3.315765 CCTGCAGGTAAAACCGACA 57.684 52.632 25.53 0.00 44.90 4.35
33 34 1.821216 CCTGCAGGTAAAACCGACAT 58.179 50.000 25.53 0.00 44.90 3.06
34 35 2.980568 CCTGCAGGTAAAACCGACATA 58.019 47.619 25.53 0.00 44.90 2.29
35 36 2.676342 CCTGCAGGTAAAACCGACATAC 59.324 50.000 25.53 0.00 44.90 2.39
36 37 2.676342 CTGCAGGTAAAACCGACATACC 59.324 50.000 5.57 0.00 44.90 2.73
38 39 2.934553 GCAGGTAAAACCGACATACCTC 59.065 50.000 0.84 0.00 44.75 3.85
39 40 3.528532 CAGGTAAAACCGACATACCTCC 58.471 50.000 0.84 0.00 44.75 4.30
40 41 3.197116 CAGGTAAAACCGACATACCTCCT 59.803 47.826 0.84 0.00 44.75 3.69
41 42 3.197116 AGGTAAAACCGACATACCTCCTG 59.803 47.826 0.00 0.00 44.75 3.86
42 43 2.109425 AAAACCGACATACCTCCTGC 57.891 50.000 0.00 0.00 0.00 4.85
44 45 0.617820 AACCGACATACCTCCTGCCT 60.618 55.000 0.00 0.00 0.00 4.75
45 46 1.043673 ACCGACATACCTCCTGCCTC 61.044 60.000 0.00 0.00 0.00 4.70
46 47 1.742768 CGACATACCTCCTGCCTCC 59.257 63.158 0.00 0.00 0.00 4.30
47 48 0.757188 CGACATACCTCCTGCCTCCT 60.757 60.000 0.00 0.00 0.00 3.69
48 49 0.755686 GACATACCTCCTGCCTCCTG 59.244 60.000 0.00 0.00 0.00 3.86
49 50 1.341156 ACATACCTCCTGCCTCCTGC 61.341 60.000 0.00 0.00 41.77 4.85
53 54 2.296365 CCTCCTGCCTCCTGCTTCA 61.296 63.158 0.00 0.00 42.00 3.02
54 55 1.221293 CTCCTGCCTCCTGCTTCAG 59.779 63.158 0.00 0.00 42.00 3.02
55 56 1.537397 TCCTGCCTCCTGCTTCAGT 60.537 57.895 0.00 0.00 42.00 3.41
56 57 1.130054 TCCTGCCTCCTGCTTCAGTT 61.130 55.000 0.00 0.00 42.00 3.16
57 58 0.959372 CCTGCCTCCTGCTTCAGTTG 60.959 60.000 0.00 0.00 42.00 3.16
58 59 0.035881 CTGCCTCCTGCTTCAGTTGA 59.964 55.000 0.00 0.00 42.00 3.18
61 62 1.471684 GCCTCCTGCTTCAGTTGAATG 59.528 52.381 0.00 0.00 36.87 2.67
63 64 2.089980 CTCCTGCTTCAGTTGAATGGG 58.910 52.381 0.00 0.00 33.01 4.00
64 65 1.704628 TCCTGCTTCAGTTGAATGGGA 59.295 47.619 0.00 1.77 33.01 4.37
65 66 2.108075 TCCTGCTTCAGTTGAATGGGAA 59.892 45.455 0.00 0.00 33.01 3.97
68 69 3.295093 TGCTTCAGTTGAATGGGAAACA 58.705 40.909 0.00 0.00 33.01 2.83
69 70 3.703556 TGCTTCAGTTGAATGGGAAACAA 59.296 39.130 0.00 0.00 33.01 2.83
70 71 4.051237 GCTTCAGTTGAATGGGAAACAAC 58.949 43.478 0.00 0.00 42.51 3.32
71 72 4.620982 CTTCAGTTGAATGGGAAACAACC 58.379 43.478 0.00 0.00 42.98 3.77
72 73 2.621055 TCAGTTGAATGGGAAACAACCG 59.379 45.455 0.00 0.00 42.98 4.44
73 74 1.960689 AGTTGAATGGGAAACAACCGG 59.039 47.619 0.00 0.00 42.98 5.28
74 75 1.684450 GTTGAATGGGAAACAACCGGT 59.316 47.619 0.00 0.00 38.20 5.28
75 76 2.074729 TGAATGGGAAACAACCGGTT 57.925 45.000 15.86 15.86 42.98 4.44
76 77 3.225177 TGAATGGGAAACAACCGGTTA 57.775 42.857 21.79 2.19 39.29 2.85
77 78 3.563223 TGAATGGGAAACAACCGGTTAA 58.437 40.909 21.79 0.08 39.29 2.01
79 80 5.322754 TGAATGGGAAACAACCGGTTAATA 58.677 37.500 21.79 2.83 39.29 0.98
80 81 5.952947 TGAATGGGAAACAACCGGTTAATAT 59.047 36.000 21.79 6.66 39.29 1.28
81 82 6.437793 TGAATGGGAAACAACCGGTTAATATT 59.562 34.615 21.79 12.32 39.29 1.28
82 83 7.614583 TGAATGGGAAACAACCGGTTAATATTA 59.385 33.333 21.79 4.62 39.29 0.98
83 84 8.541899 AATGGGAAACAACCGGTTAATATTAT 57.458 30.769 21.79 6.85 39.29 1.28
84 85 7.571080 TGGGAAACAACCGGTTAATATTATC 57.429 36.000 21.79 11.07 39.29 1.75
85 86 6.546772 TGGGAAACAACCGGTTAATATTATCC 59.453 38.462 21.79 18.50 39.29 2.59
102 103 2.599408 TCCGGACTGGATATACTCCC 57.401 55.000 0.00 0.00 43.74 4.30
103 104 2.071372 TCCGGACTGGATATACTCCCT 58.929 52.381 0.00 0.00 43.74 4.20
104 105 2.041350 TCCGGACTGGATATACTCCCTC 59.959 54.545 0.00 0.00 43.74 4.30
105 106 2.448453 CGGACTGGATATACTCCCTCC 58.552 57.143 0.00 0.00 44.23 4.30
106 107 2.822697 GGACTGGATATACTCCCTCCC 58.177 57.143 0.00 0.00 44.23 4.30
107 108 2.384029 GGACTGGATATACTCCCTCCCT 59.616 54.545 0.00 0.00 44.23 4.20
108 109 3.564790 GGACTGGATATACTCCCTCCCTC 60.565 56.522 0.00 0.00 44.23 4.30
109 110 3.335484 GACTGGATATACTCCCTCCCTCT 59.665 52.174 0.00 0.00 44.23 3.69
110 111 3.335484 ACTGGATATACTCCCTCCCTCTC 59.665 52.174 0.00 0.00 44.23 3.20
111 112 3.335183 CTGGATATACTCCCTCCCTCTCA 59.665 52.174 0.00 0.00 44.23 3.27
112 113 3.335183 TGGATATACTCCCTCCCTCTCAG 59.665 52.174 0.00 0.00 44.23 3.35
115 116 3.786213 ATACTCCCTCCCTCTCAGTTT 57.214 47.619 0.00 0.00 0.00 2.66
116 117 4.901785 ATACTCCCTCCCTCTCAGTTTA 57.098 45.455 0.00 0.00 0.00 2.01
117 118 2.822697 ACTCCCTCCCTCTCAGTTTAC 58.177 52.381 0.00 0.00 0.00 2.01
118 119 2.111972 ACTCCCTCCCTCTCAGTTTACA 59.888 50.000 0.00 0.00 0.00 2.41
119 120 3.173965 CTCCCTCCCTCTCAGTTTACAA 58.826 50.000 0.00 0.00 0.00 2.41
120 121 3.173965 TCCCTCCCTCTCAGTTTACAAG 58.826 50.000 0.00 0.00 0.00 3.16
122 123 2.355209 CCTCCCTCTCAGTTTACAAGGC 60.355 54.545 0.00 0.00 0.00 4.35
123 124 1.275291 TCCCTCTCAGTTTACAAGGCG 59.725 52.381 0.00 0.00 0.00 5.52
124 125 1.002087 CCCTCTCAGTTTACAAGGCGT 59.998 52.381 0.00 0.00 0.00 5.68
125 126 2.069273 CCTCTCAGTTTACAAGGCGTG 58.931 52.381 0.00 0.00 0.00 5.34
128 129 1.440353 CAGTTTACAAGGCGTGCGC 60.440 57.895 8.17 8.17 41.06 6.09
130 131 2.968156 TTTACAAGGCGTGCGCGT 60.968 55.556 22.18 8.25 43.06 6.01
132 133 1.888958 TTTACAAGGCGTGCGCGTAC 61.889 55.000 22.18 17.94 43.06 3.67
138 139 2.651232 GCGTGCGCGTACCTCTAG 60.651 66.667 21.71 8.24 40.81 2.43
139 140 2.024305 CGTGCGCGTACCTCTAGG 59.976 66.667 21.71 2.39 42.17 3.02
154 155 5.011090 CCTCTAGGTCGTCAATTTGATCA 57.989 43.478 1.78 0.00 0.00 2.92
155 156 5.419542 CCTCTAGGTCGTCAATTTGATCAA 58.580 41.667 3.38 3.38 0.00 2.57
156 157 5.292101 CCTCTAGGTCGTCAATTTGATCAAC 59.708 44.000 7.89 0.00 0.00 3.18
160 161 5.556915 AGGTCGTCAATTTGATCAACCTAA 58.443 37.500 20.14 0.00 35.24 2.69
162 163 7.335627 AGGTCGTCAATTTGATCAACCTAATA 58.664 34.615 20.14 0.00 35.24 0.98
164 165 7.065324 GGTCGTCAATTTGATCAACCTAATACA 59.935 37.037 7.89 0.00 0.00 2.29
167 168 8.450964 CGTCAATTTGATCAACCTAATACAAGT 58.549 33.333 7.89 0.00 0.00 3.16
168 169 9.774742 GTCAATTTGATCAACCTAATACAAGTC 57.225 33.333 7.89 0.00 0.00 3.01
169 170 9.513906 TCAATTTGATCAACCTAATACAAGTCA 57.486 29.630 7.89 0.00 0.00 3.41
222 223 9.840427 AACTTCATATGTTCTATTTTCAAACGG 57.160 29.630 1.90 0.00 0.00 4.44
223 224 9.010029 ACTTCATATGTTCTATTTTCAAACGGT 57.990 29.630 1.90 0.00 0.00 4.83
284 285 2.143008 TGGCAACATAGGTATACGCG 57.857 50.000 3.53 3.53 46.17 6.01
285 286 0.788391 GGCAACATAGGTATACGCGC 59.212 55.000 5.73 0.00 0.00 6.86
286 287 1.493772 GCAACATAGGTATACGCGCA 58.506 50.000 5.73 0.00 0.00 6.09
288 289 2.058798 CAACATAGGTATACGCGCAGG 58.941 52.381 5.73 0.00 0.00 4.85
289 290 1.612676 ACATAGGTATACGCGCAGGA 58.387 50.000 5.73 0.00 0.00 3.86
290 291 1.268899 ACATAGGTATACGCGCAGGAC 59.731 52.381 5.73 0.00 0.00 3.85
291 292 1.540267 CATAGGTATACGCGCAGGACT 59.460 52.381 5.73 1.68 0.00 3.85
292 293 1.683943 TAGGTATACGCGCAGGACTT 58.316 50.000 5.73 0.00 0.00 3.01
293 294 0.102481 AGGTATACGCGCAGGACTTG 59.898 55.000 5.73 0.00 0.00 3.16
295 296 1.066002 GGTATACGCGCAGGACTTGTA 59.934 52.381 5.73 0.00 0.00 2.41
296 297 2.480073 GGTATACGCGCAGGACTTGTAA 60.480 50.000 5.73 0.00 0.00 2.41
297 298 2.373540 ATACGCGCAGGACTTGTAAA 57.626 45.000 5.73 0.00 0.00 2.01
298 299 2.373540 TACGCGCAGGACTTGTAAAT 57.626 45.000 5.73 0.00 0.00 1.40
299 300 1.076332 ACGCGCAGGACTTGTAAATC 58.924 50.000 5.73 0.00 0.00 2.17
301 302 2.094390 ACGCGCAGGACTTGTAAATCTA 60.094 45.455 5.73 0.00 0.00 1.98
302 303 3.123804 CGCGCAGGACTTGTAAATCTAT 58.876 45.455 8.75 0.00 0.00 1.98
303 304 4.202080 ACGCGCAGGACTTGTAAATCTATA 60.202 41.667 5.73 0.00 0.00 1.31
304 305 4.923871 CGCGCAGGACTTGTAAATCTATAT 59.076 41.667 8.75 0.00 0.00 0.86
305 306 6.090783 CGCGCAGGACTTGTAAATCTATATA 58.909 40.000 8.75 0.00 0.00 0.86
306 307 6.752351 CGCGCAGGACTTGTAAATCTATATAT 59.248 38.462 8.75 0.00 0.00 0.86
307 308 7.253783 CGCGCAGGACTTGTAAATCTATATATG 60.254 40.741 8.75 0.00 0.00 1.78
308 309 7.010552 GCGCAGGACTTGTAAATCTATATATGG 59.989 40.741 0.30 0.00 0.00 2.74
312 313 8.890472 AGGACTTGTAAATCTATATATGGCCAA 58.110 33.333 10.96 0.00 0.00 4.52
313 314 9.686683 GGACTTGTAAATCTATATATGGCCAAT 57.313 33.333 10.96 7.63 0.00 3.16
325 326 3.281332 GGCCAATCTAGGTGCCAAA 57.719 52.632 0.00 0.00 43.46 3.28
326 327 1.555967 GGCCAATCTAGGTGCCAAAA 58.444 50.000 0.00 0.00 43.46 2.44
327 328 2.110578 GGCCAATCTAGGTGCCAAAAT 58.889 47.619 0.00 0.00 43.46 1.82
328 329 3.295973 GGCCAATCTAGGTGCCAAAATA 58.704 45.455 0.00 0.00 43.46 1.40
329 330 3.704061 GGCCAATCTAGGTGCCAAAATAA 59.296 43.478 0.00 0.00 43.46 1.40
330 331 4.202151 GGCCAATCTAGGTGCCAAAATAAG 60.202 45.833 0.00 0.00 43.46 1.73
331 332 4.402474 GCCAATCTAGGTGCCAAAATAAGT 59.598 41.667 0.00 0.00 0.00 2.24
332 333 5.592688 GCCAATCTAGGTGCCAAAATAAGTA 59.407 40.000 0.00 0.00 0.00 2.24
333 334 6.459710 GCCAATCTAGGTGCCAAAATAAGTAC 60.460 42.308 0.00 0.00 0.00 2.73
334 335 6.828785 CCAATCTAGGTGCCAAAATAAGTACT 59.171 38.462 0.00 0.00 0.00 2.73
335 336 7.990886 CCAATCTAGGTGCCAAAATAAGTACTA 59.009 37.037 0.00 0.00 0.00 1.82
336 337 8.827677 CAATCTAGGTGCCAAAATAAGTACTAC 58.172 37.037 0.00 0.00 0.00 2.73
337 338 7.729124 TCTAGGTGCCAAAATAAGTACTACT 57.271 36.000 0.00 0.00 0.00 2.57
339 340 8.910944 TCTAGGTGCCAAAATAAGTACTACTAG 58.089 37.037 0.00 0.00 0.00 2.57
340 341 7.492077 AGGTGCCAAAATAAGTACTACTAGT 57.508 36.000 0.00 0.00 0.00 2.57
364 365 9.319143 AGTATAAATCGCTTGATTATCTATGGC 57.681 33.333 0.00 0.00 41.45 4.40
366 367 4.558226 ATCGCTTGATTATCTATGGCCA 57.442 40.909 8.56 8.56 0.00 5.36
367 368 4.350368 TCGCTTGATTATCTATGGCCAA 57.650 40.909 10.96 0.00 0.00 4.52
368 369 4.910195 TCGCTTGATTATCTATGGCCAAT 58.090 39.130 10.96 0.29 0.00 3.16
369 370 4.937620 TCGCTTGATTATCTATGGCCAATC 59.062 41.667 10.96 7.83 0.00 2.67
370 371 4.940046 CGCTTGATTATCTATGGCCAATCT 59.060 41.667 10.96 0.00 0.00 2.40
371 372 6.070824 TCGCTTGATTATCTATGGCCAATCTA 60.071 38.462 10.96 2.97 0.00 1.98
372 373 6.257411 CGCTTGATTATCTATGGCCAATCTAG 59.743 42.308 10.96 14.21 35.05 2.43
374 375 7.574021 TTGATTATCTATGGCCAATCTAGGT 57.426 36.000 10.96 6.14 0.00 3.08
375 376 6.950842 TGATTATCTATGGCCAATCTAGGTG 58.049 40.000 10.96 0.00 0.00 4.00
376 377 3.710209 ATCTATGGCCAATCTAGGTGC 57.290 47.619 10.96 0.00 0.00 5.01
377 378 1.699634 TCTATGGCCAATCTAGGTGCC 59.300 52.381 10.96 0.00 44.27 5.01
381 382 1.780503 GGCCAATCTAGGTGCCATTT 58.219 50.000 0.00 0.00 43.46 2.32
382 383 2.944129 GGCCAATCTAGGTGCCATTTA 58.056 47.619 0.00 0.00 43.46 1.40
384 385 3.897505 GGCCAATCTAGGTGCCATTTAAT 59.102 43.478 0.00 0.00 43.46 1.40
385 386 5.076873 GGCCAATCTAGGTGCCATTTAATA 58.923 41.667 0.00 0.00 43.46 0.98
386 387 5.183904 GGCCAATCTAGGTGCCATTTAATAG 59.816 44.000 0.00 0.00 43.46 1.73
388 389 6.940298 GCCAATCTAGGTGCCATTTAATAGTA 59.060 38.462 0.00 0.00 0.00 1.82
389 390 7.094762 GCCAATCTAGGTGCCATTTAATAGTAC 60.095 40.741 0.00 0.00 0.00 2.73
390 391 7.936847 CCAATCTAGGTGCCATTTAATAGTACA 59.063 37.037 0.00 0.00 0.00 2.90
392 393 7.670605 TCTAGGTGCCATTTAATAGTACAGT 57.329 36.000 0.00 0.00 0.00 3.55
393 394 8.771521 TCTAGGTGCCATTTAATAGTACAGTA 57.228 34.615 0.00 0.00 0.00 2.74
394 395 8.857098 TCTAGGTGCCATTTAATAGTACAGTAG 58.143 37.037 0.00 0.00 0.00 2.57
396 397 6.614087 AGGTGCCATTTAATAGTACAGTAGGA 59.386 38.462 0.00 0.00 0.00 2.94
397 398 6.929606 GGTGCCATTTAATAGTACAGTAGGAG 59.070 42.308 0.00 0.00 0.00 3.69
398 399 7.418712 GGTGCCATTTAATAGTACAGTAGGAGT 60.419 40.741 0.00 0.00 0.00 3.85
399 400 8.636213 GTGCCATTTAATAGTACAGTAGGAGTA 58.364 37.037 0.00 0.00 0.00 2.59
402 403 8.857098 CCATTTAATAGTACAGTAGGAGTAGCA 58.143 37.037 0.00 0.00 0.00 3.49
409 410 6.767456 AGTACAGTAGGAGTAGCATATACGT 58.233 40.000 0.00 0.00 0.00 3.57
410 411 5.943706 ACAGTAGGAGTAGCATATACGTG 57.056 43.478 0.00 0.00 0.00 4.49
411 412 4.760715 ACAGTAGGAGTAGCATATACGTGG 59.239 45.833 0.00 0.00 0.00 4.94
412 413 4.760715 CAGTAGGAGTAGCATATACGTGGT 59.239 45.833 0.00 0.00 0.00 4.16
414 415 3.828921 AGGAGTAGCATATACGTGGTCA 58.171 45.455 0.00 0.00 0.00 4.02
415 416 4.212716 AGGAGTAGCATATACGTGGTCAA 58.787 43.478 0.00 0.00 0.00 3.18
416 417 4.647853 AGGAGTAGCATATACGTGGTCAAA 59.352 41.667 0.00 0.00 0.00 2.69
417 418 4.743644 GGAGTAGCATATACGTGGTCAAAC 59.256 45.833 0.00 0.00 0.00 2.93
418 419 4.690122 AGTAGCATATACGTGGTCAAACC 58.310 43.478 0.00 0.00 39.22 3.27
432 433 5.690865 TGGTCAAACCAGAATATACCATCC 58.309 41.667 0.00 0.00 44.79 3.51
433 434 4.755123 GGTCAAACCAGAATATACCATCCG 59.245 45.833 0.00 0.00 38.42 4.18
434 435 5.365619 GTCAAACCAGAATATACCATCCGT 58.634 41.667 0.00 0.00 0.00 4.69
435 436 5.820947 GTCAAACCAGAATATACCATCCGTT 59.179 40.000 0.00 0.00 0.00 4.44
437 438 5.623956 AACCAGAATATACCATCCGTTGA 57.376 39.130 0.00 0.00 0.00 3.18
438 439 4.957296 ACCAGAATATACCATCCGTTGAC 58.043 43.478 0.00 0.00 0.00 3.18
439 440 4.407621 ACCAGAATATACCATCCGTTGACA 59.592 41.667 0.00 0.00 0.00 3.58
442 443 6.486657 CCAGAATATACCATCCGTTGACAAAT 59.513 38.462 0.00 0.00 0.00 2.32
443 444 7.307989 CCAGAATATACCATCCGTTGACAAATC 60.308 40.741 0.00 0.00 0.00 2.17
444 445 7.226523 CAGAATATACCATCCGTTGACAAATCA 59.773 37.037 0.00 0.00 0.00 2.57
445 446 7.939039 AGAATATACCATCCGTTGACAAATCAT 59.061 33.333 0.00 0.00 33.85 2.45
457 458 1.167851 CAAATCATGTCACGCCCTGT 58.832 50.000 0.00 0.00 0.00 4.00
458 459 1.131126 CAAATCATGTCACGCCCTGTC 59.869 52.381 0.00 0.00 0.00 3.51
459 460 0.740868 AATCATGTCACGCCCTGTCG 60.741 55.000 0.00 0.00 0.00 4.35
461 462 1.374125 CATGTCACGCCCTGTCGAA 60.374 57.895 0.00 0.00 0.00 3.71
462 463 0.948623 CATGTCACGCCCTGTCGAAA 60.949 55.000 0.00 0.00 0.00 3.46
463 464 0.036388 ATGTCACGCCCTGTCGAAAT 60.036 50.000 0.00 0.00 0.00 2.17
465 466 1.375396 TCACGCCCTGTCGAAATGG 60.375 57.895 0.00 0.00 0.00 3.16
469 470 2.106683 GCCCTGTCGAAATGGACGG 61.107 63.158 0.30 0.00 41.89 4.79
470 471 1.295423 CCCTGTCGAAATGGACGGT 59.705 57.895 0.00 0.00 40.88 4.83
471 472 0.533491 CCCTGTCGAAATGGACGGTA 59.467 55.000 0.00 0.00 40.88 4.02
472 473 1.066716 CCCTGTCGAAATGGACGGTAA 60.067 52.381 0.00 0.00 40.88 2.85
474 475 3.267483 CCTGTCGAAATGGACGGTAATT 58.733 45.455 4.10 0.00 40.88 1.40
476 477 4.871557 CCTGTCGAAATGGACGGTAATTTA 59.128 41.667 4.10 0.00 40.88 1.40
479 480 7.225145 CCTGTCGAAATGGACGGTAATTTAATA 59.775 37.037 4.10 0.00 40.88 0.98
480 481 8.665643 TGTCGAAATGGACGGTAATTTAATAT 57.334 30.769 0.00 0.00 39.83 1.28
481 482 8.767085 TGTCGAAATGGACGGTAATTTAATATC 58.233 33.333 0.00 0.00 39.83 1.63
482 483 8.767085 GTCGAAATGGACGGTAATTTAATATCA 58.233 33.333 0.00 0.00 0.00 2.15
483 484 8.767085 TCGAAATGGACGGTAATTTAATATCAC 58.233 33.333 2.30 0.00 0.00 3.06
484 485 8.552865 CGAAATGGACGGTAATTTAATATCACA 58.447 33.333 2.30 0.00 0.00 3.58
487 488 6.056884 TGGACGGTAATTTAATATCACACCC 58.943 40.000 0.00 0.00 0.00 4.61
489 490 6.713450 GGACGGTAATTTAATATCACACCCAT 59.287 38.462 0.00 0.00 0.00 4.00
490 491 7.879160 GGACGGTAATTTAATATCACACCCATA 59.121 37.037 0.00 0.00 0.00 2.74
492 493 9.802039 ACGGTAATTTAATATCACACCCATAAT 57.198 29.630 0.00 0.00 0.00 1.28
502 503 9.561069 AATATCACACCCATAATCACTTCTTAC 57.439 33.333 0.00 0.00 0.00 2.34
503 504 5.741011 TCACACCCATAATCACTTCTTACC 58.259 41.667 0.00 0.00 0.00 2.85
504 505 5.249622 TCACACCCATAATCACTTCTTACCA 59.750 40.000 0.00 0.00 0.00 3.25
508 509 6.708054 CACCCATAATCACTTCTTACCATCTC 59.292 42.308 0.00 0.00 0.00 2.75
509 510 6.183361 ACCCATAATCACTTCTTACCATCTCC 60.183 42.308 0.00 0.00 0.00 3.71
510 511 6.183361 CCCATAATCACTTCTTACCATCTCCA 60.183 42.308 0.00 0.00 0.00 3.86
511 512 7.282585 CCATAATCACTTCTTACCATCTCCAA 58.717 38.462 0.00 0.00 0.00 3.53
512 513 7.941238 CCATAATCACTTCTTACCATCTCCAAT 59.059 37.037 0.00 0.00 0.00 3.16
516 517 8.970859 ATCACTTCTTACCATCTCCAATTAAG 57.029 34.615 0.00 0.00 0.00 1.85
517 518 8.146053 TCACTTCTTACCATCTCCAATTAAGA 57.854 34.615 0.00 0.00 0.00 2.10
518 519 8.772250 TCACTTCTTACCATCTCCAATTAAGAT 58.228 33.333 0.00 0.00 33.74 2.40
519 520 9.050601 CACTTCTTACCATCTCCAATTAAGATC 57.949 37.037 0.62 0.00 31.05 2.75
520 521 7.928706 ACTTCTTACCATCTCCAATTAAGATCG 59.071 37.037 0.62 0.00 31.05 3.69
523 524 5.614324 ACCATCTCCAATTAAGATCGTCA 57.386 39.130 0.62 0.00 31.05 4.35
524 525 5.360591 ACCATCTCCAATTAAGATCGTCAC 58.639 41.667 0.62 0.00 31.05 3.67
525 526 5.129485 ACCATCTCCAATTAAGATCGTCACT 59.871 40.000 0.62 0.00 31.05 3.41
526 527 6.051717 CCATCTCCAATTAAGATCGTCACTT 58.948 40.000 0.62 0.00 31.05 3.16
527 528 7.147724 ACCATCTCCAATTAAGATCGTCACTTA 60.148 37.037 0.62 0.00 31.05 2.24
528 529 7.169982 CCATCTCCAATTAAGATCGTCACTTAC 59.830 40.741 0.62 0.00 31.05 2.34
532 533 8.014070 TCCAATTAAGATCGTCACTTACCATA 57.986 34.615 0.00 0.00 30.95 2.74
533 534 7.924412 TCCAATTAAGATCGTCACTTACCATAC 59.076 37.037 0.00 0.00 30.95 2.39
534 535 7.709182 CCAATTAAGATCGTCACTTACCATACA 59.291 37.037 0.00 0.00 30.95 2.29
535 536 9.093970 CAATTAAGATCGTCACTTACCATACAA 57.906 33.333 0.00 0.00 30.95 2.41
536 537 8.644318 ATTAAGATCGTCACTTACCATACAAC 57.356 34.615 0.00 0.00 30.95 3.32
540 541 3.930229 TCGTCACTTACCATACAACATGC 59.070 43.478 0.00 0.00 0.00 4.06
543 544 5.631026 GTCACTTACCATACAACATGCTTG 58.369 41.667 0.00 0.00 0.00 4.01
545 546 5.411361 TCACTTACCATACAACATGCTTGTC 59.589 40.000 14.31 0.00 34.06 3.18
547 548 5.643777 ACTTACCATACAACATGCTTGTCTC 59.356 40.000 14.31 0.00 34.06 3.36
549 550 2.352651 CCATACAACATGCTTGTCTCCG 59.647 50.000 14.31 0.00 34.06 4.63
552 553 3.610040 ACAACATGCTTGTCTCCGATA 57.390 42.857 5.61 0.00 34.06 2.92
553 554 3.937814 ACAACATGCTTGTCTCCGATAA 58.062 40.909 5.61 0.00 34.06 1.75
554 555 3.935203 ACAACATGCTTGTCTCCGATAAG 59.065 43.478 5.61 0.00 34.06 1.73
555 556 3.185246 ACATGCTTGTCTCCGATAAGG 57.815 47.619 0.00 0.00 42.97 2.69
556 557 1.869767 CATGCTTGTCTCCGATAAGGC 59.130 52.381 3.19 0.00 40.77 4.35
558 559 1.486310 TGCTTGTCTCCGATAAGGCAT 59.514 47.619 3.19 0.00 40.77 4.40
559 560 1.869767 GCTTGTCTCCGATAAGGCATG 59.130 52.381 3.19 0.00 40.77 4.06
560 561 2.483714 GCTTGTCTCCGATAAGGCATGA 60.484 50.000 0.00 0.00 40.77 3.07
561 562 3.388308 CTTGTCTCCGATAAGGCATGAG 58.612 50.000 0.00 0.00 40.77 2.90
562 563 2.666317 TGTCTCCGATAAGGCATGAGA 58.334 47.619 0.00 0.00 40.77 3.27
564 565 4.407365 TGTCTCCGATAAGGCATGAGATA 58.593 43.478 0.00 0.00 40.77 1.98
565 566 5.019470 TGTCTCCGATAAGGCATGAGATAT 58.981 41.667 0.00 0.00 40.77 1.63
566 567 5.126222 TGTCTCCGATAAGGCATGAGATATC 59.874 44.000 0.00 0.00 40.77 1.63
567 568 5.359576 GTCTCCGATAAGGCATGAGATATCT 59.640 44.000 4.47 4.47 40.77 1.98
568 569 6.544197 GTCTCCGATAAGGCATGAGATATCTA 59.456 42.308 4.89 0.00 40.77 1.98
570 571 5.297029 TCCGATAAGGCATGAGATATCTACG 59.703 44.000 4.89 0.00 40.77 3.51
571 572 5.297029 CCGATAAGGCATGAGATATCTACGA 59.703 44.000 4.89 0.00 0.00 3.43
573 574 7.173390 CCGATAAGGCATGAGATATCTACGATA 59.827 40.741 4.89 0.00 0.00 2.92
574 575 8.560374 CGATAAGGCATGAGATATCTACGATAA 58.440 37.037 4.89 0.00 0.00 1.75
578 579 8.072321 AGGCATGAGATATCTACGATAATGTT 57.928 34.615 4.89 0.00 0.00 2.71
579 580 8.535335 AGGCATGAGATATCTACGATAATGTTT 58.465 33.333 4.89 0.00 0.00 2.83
580 581 9.155975 GGCATGAGATATCTACGATAATGTTTT 57.844 33.333 4.89 0.00 0.00 2.43
583 584 8.534333 TGAGATATCTACGATAATGTTTTGGC 57.466 34.615 4.89 0.00 0.00 4.52
584 585 7.602644 TGAGATATCTACGATAATGTTTTGGCC 59.397 37.037 4.89 0.00 0.00 5.36
586 587 8.157476 AGATATCTACGATAATGTTTTGGCCTT 58.843 33.333 2.53 0.00 0.00 4.35
588 589 9.959721 ATATCTACGATAATGTTTTGGCCTTAT 57.040 29.630 3.32 0.00 0.00 1.73
589 590 7.490962 TCTACGATAATGTTTTGGCCTTATG 57.509 36.000 3.32 0.00 0.00 1.90
592 593 5.650266 ACGATAATGTTTTGGCCTTATGTCA 59.350 36.000 3.32 0.00 0.00 3.58
593 594 5.971202 CGATAATGTTTTGGCCTTATGTCAC 59.029 40.000 3.32 0.00 0.00 3.67
594 595 4.535526 AATGTTTTGGCCTTATGTCACC 57.464 40.909 3.32 0.00 0.00 4.02
596 597 1.201414 GTTTTGGCCTTATGTCACCCG 59.799 52.381 3.32 0.00 0.00 5.28
597 598 0.693622 TTTGGCCTTATGTCACCCGA 59.306 50.000 3.32 0.00 0.00 5.14
598 599 0.916086 TTGGCCTTATGTCACCCGAT 59.084 50.000 3.32 0.00 0.00 4.18
600 601 0.468226 GGCCTTATGTCACCCGATCA 59.532 55.000 0.00 0.00 0.00 2.92
601 602 1.134220 GGCCTTATGTCACCCGATCAA 60.134 52.381 0.00 0.00 0.00 2.57
602 603 1.940613 GCCTTATGTCACCCGATCAAC 59.059 52.381 0.00 0.00 0.00 3.18
603 604 2.561569 CCTTATGTCACCCGATCAACC 58.438 52.381 0.00 0.00 0.00 3.77
604 605 2.093181 CCTTATGTCACCCGATCAACCA 60.093 50.000 0.00 0.00 0.00 3.67
605 606 3.605634 CTTATGTCACCCGATCAACCAA 58.394 45.455 0.00 0.00 0.00 3.67
606 607 2.577606 ATGTCACCCGATCAACCAAA 57.422 45.000 0.00 0.00 0.00 3.28
607 608 2.350057 TGTCACCCGATCAACCAAAA 57.650 45.000 0.00 0.00 0.00 2.44
608 609 1.950909 TGTCACCCGATCAACCAAAAC 59.049 47.619 0.00 0.00 0.00 2.43
609 610 1.950909 GTCACCCGATCAACCAAAACA 59.049 47.619 0.00 0.00 0.00 2.83
610 611 2.359531 GTCACCCGATCAACCAAAACAA 59.640 45.455 0.00 0.00 0.00 2.83
612 613 3.447586 TCACCCGATCAACCAAAACAAAA 59.552 39.130 0.00 0.00 0.00 2.44
613 614 4.081642 TCACCCGATCAACCAAAACAAAAA 60.082 37.500 0.00 0.00 0.00 1.94
614 615 4.033472 CACCCGATCAACCAAAACAAAAAC 59.967 41.667 0.00 0.00 0.00 2.43
615 616 4.184629 CCCGATCAACCAAAACAAAAACA 58.815 39.130 0.00 0.00 0.00 2.83
616 617 4.631813 CCCGATCAACCAAAACAAAAACAA 59.368 37.500 0.00 0.00 0.00 2.83
619 620 6.036517 CCGATCAACCAAAACAAAAACAATGA 59.963 34.615 0.00 0.00 0.00 2.57
620 621 6.899243 CGATCAACCAAAACAAAAACAATGAC 59.101 34.615 0.00 0.00 0.00 3.06
621 622 6.158175 TCAACCAAAACAAAAACAATGACG 57.842 33.333 0.00 0.00 0.00 4.35
622 623 5.926542 TCAACCAAAACAAAAACAATGACGA 59.073 32.000 0.00 0.00 0.00 4.20
624 625 6.976636 ACCAAAACAAAAACAATGACGAAT 57.023 29.167 0.00 0.00 0.00 3.34
625 626 6.999456 ACCAAAACAAAAACAATGACGAATC 58.001 32.000 0.00 0.00 0.00 2.52
626 627 6.591834 ACCAAAACAAAAACAATGACGAATCA 59.408 30.769 0.00 0.00 39.83 2.57
627 628 7.118390 ACCAAAACAAAAACAATGACGAATCAA 59.882 29.630 0.00 0.00 38.69 2.57
629 630 6.826893 AACAAAAACAATGACGAATCAAGG 57.173 33.333 0.00 0.00 38.69 3.61
630 631 6.142818 ACAAAAACAATGACGAATCAAGGA 57.857 33.333 0.00 0.00 38.69 3.36
631 632 6.568869 ACAAAAACAATGACGAATCAAGGAA 58.431 32.000 0.00 0.00 38.69 3.36
632 633 6.697019 ACAAAAACAATGACGAATCAAGGAAG 59.303 34.615 0.00 0.00 38.69 3.46
633 634 6.633500 AAAACAATGACGAATCAAGGAAGA 57.367 33.333 0.00 0.00 38.69 2.87
634 635 6.824305 AAACAATGACGAATCAAGGAAGAT 57.176 33.333 0.00 0.00 38.69 2.40
636 637 6.824305 ACAATGACGAATCAAGGAAGATTT 57.176 33.333 0.00 0.00 38.30 2.17
637 638 7.219484 ACAATGACGAATCAAGGAAGATTTT 57.781 32.000 0.00 0.00 38.30 1.82
638 639 7.308435 ACAATGACGAATCAAGGAAGATTTTC 58.692 34.615 0.00 0.00 38.30 2.29
639 640 5.530519 TGACGAATCAAGGAAGATTTTCG 57.469 39.130 0.00 0.00 38.30 3.46
640 641 4.994852 TGACGAATCAAGGAAGATTTTCGT 59.005 37.500 8.08 8.08 41.52 3.85
641 642 6.160684 TGACGAATCAAGGAAGATTTTCGTA 58.839 36.000 8.29 0.00 39.93 3.43
642 643 6.647481 TGACGAATCAAGGAAGATTTTCGTAA 59.353 34.615 8.29 0.00 39.93 3.18
645 646 8.512138 ACGAATCAAGGAAGATTTTCGTAAAAT 58.488 29.630 6.71 5.59 38.79 1.82
647 648 9.840427 GAATCAAGGAAGATTTTCGTAAAATGA 57.160 29.630 9.35 0.00 40.97 2.57
652 653 9.810545 AAGGAAGATTTTCGTAAAATGAAAACA 57.189 25.926 8.72 0.00 43.41 2.83
653 654 9.463443 AGGAAGATTTTCGTAAAATGAAAACAG 57.537 29.630 8.72 0.00 43.41 3.16
654 655 8.699749 GGAAGATTTTCGTAAAATGAAAACAGG 58.300 33.333 8.72 0.00 43.41 4.00
655 656 8.587952 AAGATTTTCGTAAAATGAAAACAGGG 57.412 30.769 8.72 0.00 43.41 4.45
656 657 7.151976 AGATTTTCGTAAAATGAAAACAGGGG 58.848 34.615 8.72 0.00 43.41 4.79
657 658 4.857509 TTCGTAAAATGAAAACAGGGGG 57.142 40.909 0.00 0.00 0.00 5.40
677 678 0.247460 GCTGTGGCCCCTTTTTGATC 59.753 55.000 0.00 0.00 0.00 2.92
678 679 0.527565 CTGTGGCCCCTTTTTGATCG 59.472 55.000 0.00 0.00 0.00 3.69
679 680 0.178975 TGTGGCCCCTTTTTGATCGT 60.179 50.000 0.00 0.00 0.00 3.73
680 681 1.074084 TGTGGCCCCTTTTTGATCGTA 59.926 47.619 0.00 0.00 0.00 3.43
683 684 3.006003 GTGGCCCCTTTTTGATCGTAAAA 59.994 43.478 0.00 5.70 0.00 1.52
684 685 3.641906 TGGCCCCTTTTTGATCGTAAAAA 59.358 39.130 0.00 5.60 37.23 1.94
709 710 7.797121 AAAAATCCATACAAAGGGTGATCTT 57.203 32.000 0.00 0.00 0.00 2.40
710 711 7.410120 AAAATCCATACAAAGGGTGATCTTC 57.590 36.000 0.00 0.00 0.00 2.87
712 713 7.451731 AATCCATACAAAGGGTGATCTTCTA 57.548 36.000 0.00 0.00 0.00 2.10
713 714 6.884472 TCCATACAAAGGGTGATCTTCTAA 57.116 37.500 0.00 0.00 0.00 2.10
714 715 6.650120 TCCATACAAAGGGTGATCTTCTAAC 58.350 40.000 0.00 0.00 0.00 2.34
715 716 6.214615 TCCATACAAAGGGTGATCTTCTAACA 59.785 38.462 0.00 0.00 0.00 2.41
726 727 7.176690 GGGTGATCTTCTAACAAGAAAAATCCA 59.823 37.037 0.00 0.00 0.00 3.41
742 743 6.405278 AAAATCCACACAAGAGTAAAAGGG 57.595 37.500 0.00 0.00 0.00 3.95
746 747 4.080243 TCCACACAAGAGTAAAAGGGAACA 60.080 41.667 0.00 0.00 0.00 3.18
749 750 6.265577 CACACAAGAGTAAAAGGGAACAAAG 58.734 40.000 0.00 0.00 0.00 2.77
772 773 3.444742 TGAACGGGTCGAGAAAATAGCTA 59.555 43.478 0.00 0.00 0.00 3.32
787 789 8.147704 AGAAAATAGCTAGCAGGAAAGTCTATC 58.852 37.037 18.83 0.65 0.00 2.08
789 791 6.834168 ATAGCTAGCAGGAAAGTCTATCTC 57.166 41.667 18.83 0.00 0.00 2.75
790 792 4.541705 AGCTAGCAGGAAAGTCTATCTCA 58.458 43.478 18.83 0.00 0.00 3.27
791 793 4.584325 AGCTAGCAGGAAAGTCTATCTCAG 59.416 45.833 18.83 0.00 0.00 3.35
817 3366 6.293698 TCTCAGACATTCCAATCCACATATG 58.706 40.000 0.00 0.00 0.00 1.78
871 3452 3.944250 TACTCGACCCACCCCCGTC 62.944 68.421 0.00 0.00 0.00 4.79
881 3463 1.481871 CACCCCCGTCGCCTATATAT 58.518 55.000 0.00 0.00 0.00 0.86
889 3471 2.950309 CGTCGCCTATATATAGCCCAGT 59.050 50.000 13.49 0.00 0.00 4.00
954 3549 3.130340 ACAACACACAACAAACCCATCTC 59.870 43.478 0.00 0.00 0.00 2.75
955 3550 1.946768 ACACACAACAAACCCATCTCG 59.053 47.619 0.00 0.00 0.00 4.04
956 3551 1.946768 CACACAACAAACCCATCTCGT 59.053 47.619 0.00 0.00 0.00 4.18
957 3552 2.032030 CACACAACAAACCCATCTCGTC 60.032 50.000 0.00 0.00 0.00 4.20
958 3553 2.158813 ACACAACAAACCCATCTCGTCT 60.159 45.455 0.00 0.00 0.00 4.18
1020 3631 2.510238 GCTCCGATGCTCAAGCGT 60.510 61.111 0.00 0.00 45.83 5.07
1046 3657 1.229209 AGGACGAGCCCAAGAAGGA 60.229 57.895 0.00 0.00 41.22 3.36
1536 4187 2.203728 ACGTGGAGCCACACCCTA 60.204 61.111 18.85 0.00 46.47 3.53
1716 4367 4.324991 GACCCGACCCCGTTTGCT 62.325 66.667 0.00 0.00 0.00 3.91
1897 4585 8.640091 TCGATTTTCTCACAGATGAATCTTAG 57.360 34.615 0.00 0.00 34.22 2.18
1934 4636 6.321690 TCATTGATGTTTCCATGACATGCATA 59.678 34.615 10.10 0.00 37.83 3.14
1936 4641 6.079424 TGATGTTTCCATGACATGCATATG 57.921 37.500 10.10 0.00 37.83 1.78
1986 4691 1.153289 CGAGGAGGCCAACATGGAG 60.153 63.158 5.01 0.00 40.96 3.86
2207 5117 5.297569 AGTGCTATCAGTTAGGGGATTTC 57.702 43.478 0.00 0.00 0.00 2.17
2208 5118 4.058817 GTGCTATCAGTTAGGGGATTTCG 58.941 47.826 0.00 0.00 0.00 3.46
2209 5119 3.964688 TGCTATCAGTTAGGGGATTTCGA 59.035 43.478 0.00 0.00 0.00 3.71
2210 5120 4.407621 TGCTATCAGTTAGGGGATTTCGAA 59.592 41.667 0.00 0.00 0.00 3.71
2211 5121 5.071788 TGCTATCAGTTAGGGGATTTCGAAT 59.928 40.000 0.00 0.00 0.00 3.34
2212 5122 5.998363 GCTATCAGTTAGGGGATTTCGAATT 59.002 40.000 0.00 0.00 0.00 2.17
2213 5123 6.486993 GCTATCAGTTAGGGGATTTCGAATTT 59.513 38.462 0.00 0.00 0.00 1.82
2218 5128 5.125578 AGTTAGGGGATTTCGAATTTTCAGC 59.874 40.000 0.00 0.00 0.00 4.26
2231 5143 8.492673 TCGAATTTTCAGCAATGAACTATACT 57.507 30.769 0.00 0.00 0.00 2.12
2232 5144 8.604035 TCGAATTTTCAGCAATGAACTATACTC 58.396 33.333 0.00 0.00 0.00 2.59
2233 5145 8.607459 CGAATTTTCAGCAATGAACTATACTCT 58.393 33.333 0.00 0.00 0.00 3.24
2322 5609 6.096695 ACGTGTTTCTTGTTTTAGTTTGCAT 58.903 32.000 0.00 0.00 0.00 3.96
2329 5616 9.818796 TTTCTTGTTTTAGTTTGCATGAAAAAC 57.181 25.926 0.00 8.25 39.38 2.43
2351 5638 2.500098 AGAGGCGTGTACACCATGTATT 59.500 45.455 20.11 0.00 35.05 1.89
2356 5643 3.621268 GCGTGTACACCATGTATTGATGT 59.379 43.478 20.11 0.00 35.05 3.06
2357 5644 4.806775 GCGTGTACACCATGTATTGATGTA 59.193 41.667 20.11 0.00 35.05 2.29
2358 5645 5.465390 GCGTGTACACCATGTATTGATGTAT 59.535 40.000 20.11 0.00 35.05 2.29
2359 5646 6.643360 GCGTGTACACCATGTATTGATGTATA 59.357 38.462 20.11 0.00 35.05 1.47
2360 5647 7.148804 GCGTGTACACCATGTATTGATGTATAG 60.149 40.741 20.11 0.86 35.05 1.31
2361 5648 8.079809 CGTGTACACCATGTATTGATGTATAGA 58.920 37.037 20.11 0.00 35.05 1.98
2362 5649 9.929180 GTGTACACCATGTATTGATGTATAGAT 57.071 33.333 15.42 0.00 35.05 1.98
2404 5754 7.062138 ACGTGTATTTTGCATGCTTAAATCAAG 59.938 33.333 24.71 23.07 37.31 3.02
2435 5787 9.979578 TTGCAAATTATTGTACATGTTCTTCTT 57.020 25.926 2.30 0.00 38.85 2.52
2445 5797 5.490139 ACATGTTCTTCTTATGAATGCCG 57.510 39.130 0.00 0.00 0.00 5.69
2450 5802 0.657312 TTCTTATGAATGCCGCAGCG 59.343 50.000 8.18 8.18 44.31 5.18
2451 5803 1.369689 CTTATGAATGCCGCAGCGC 60.370 57.895 10.07 0.00 44.31 5.92
2531 6034 9.144085 GATTAGCATCGACAAAGTTAATTAACG 57.856 33.333 19.92 10.51 40.96 3.18
2541 6044 7.395645 ACAAAGTTAATTAACGTTTGCAAAGC 58.604 30.769 29.22 6.89 40.96 3.51
2546 6049 5.402464 AATTAACGTTTGCAAAGCTTTGG 57.598 34.783 34.02 21.83 38.57 3.28
2551 6054 4.688021 ACGTTTGCAAAGCTTTGGATTAA 58.312 34.783 34.02 23.13 38.31 1.40
2553 6056 5.757808 ACGTTTGCAAAGCTTTGGATTAATT 59.242 32.000 34.02 16.13 38.31 1.40
2554 6057 6.926272 ACGTTTGCAAAGCTTTGGATTAATTA 59.074 30.769 34.02 17.02 38.31 1.40
2555 6058 7.116233 ACGTTTGCAAAGCTTTGGATTAATTAG 59.884 33.333 34.02 21.21 38.31 1.73
2556 6059 6.966435 TTGCAAAGCTTTGGATTAATTAGC 57.034 33.333 34.02 19.32 38.31 3.09
2557 6060 6.035368 TGCAAAGCTTTGGATTAATTAGCA 57.965 33.333 34.02 21.40 38.57 3.49
2559 6062 7.104939 TGCAAAGCTTTGGATTAATTAGCATT 58.895 30.769 34.02 0.00 38.57 3.56
2562 6065 8.598075 CAAAGCTTTGGATTAATTAGCATTGTC 58.402 33.333 28.12 0.00 36.40 3.18
2563 6066 7.408756 AGCTTTGGATTAATTAGCATTGTCA 57.591 32.000 12.36 0.00 34.37 3.58
2564 6067 7.839907 AGCTTTGGATTAATTAGCATTGTCAA 58.160 30.769 12.36 0.00 34.37 3.18
2565 6068 8.313292 AGCTTTGGATTAATTAGCATTGTCAAA 58.687 29.630 12.36 0.00 34.37 2.69
2566 6069 8.934825 GCTTTGGATTAATTAGCATTGTCAAAA 58.065 29.630 0.00 0.00 0.00 2.44
2568 6071 9.995003 TTTGGATTAATTAGCATTGTCAAAAGT 57.005 25.926 0.00 0.00 0.00 2.66
2569 6072 9.995003 TTGGATTAATTAGCATTGTCAAAAGTT 57.005 25.926 0.00 0.00 0.00 2.66
2578 6081 9.973450 TTAGCATTGTCAAAAGTTAAATTAGCA 57.027 25.926 0.00 0.00 0.00 3.49
2580 6083 9.492973 AGCATTGTCAAAAGTTAAATTAGCATT 57.507 25.926 0.00 0.00 0.00 3.56
2581 6084 9.745323 GCATTGTCAAAAGTTAAATTAGCATTC 57.255 29.630 0.00 0.00 0.00 2.67
2582 6085 9.941991 CATTGTCAAAAGTTAAATTAGCATTCG 57.058 29.630 0.00 0.00 0.00 3.34
2584 6087 6.584563 TGTCAAAAGTTAAATTAGCATTCGCC 59.415 34.615 0.00 0.00 39.83 5.54
2587 6090 6.944557 AAAGTTAAATTAGCATTCGCCAAC 57.055 33.333 0.00 0.00 39.83 3.77
2596 6099 1.337635 GCATTCGCCAACCAAAATCCA 60.338 47.619 0.00 0.00 0.00 3.41
2601 6104 0.740516 GCCAACCAAAATCCATGGCG 60.741 55.000 6.96 0.00 46.11 5.69
2608 6111 1.137479 CAAAATCCATGGCGGCTCATT 59.863 47.619 11.43 0.00 33.14 2.57
2609 6112 0.748450 AAATCCATGGCGGCTCATTG 59.252 50.000 11.43 2.72 33.14 2.82
2610 6113 1.111116 AATCCATGGCGGCTCATTGG 61.111 55.000 11.43 12.01 33.14 3.16
2687 6405 2.420568 CGTAACAGCTCGGCCCCTA 61.421 63.158 0.00 0.00 0.00 3.53
2738 6468 2.807895 CGAACGTTCCGGCATCGT 60.808 61.111 22.07 11.35 39.49 3.73
2748 6478 4.501714 GGCATCGTGACGGGCGTA 62.502 66.667 4.70 0.00 0.00 4.42
2825 6763 3.130160 GGGACGTCTACGAGCCGT 61.130 66.667 16.46 5.58 44.35 5.68
2839 6777 3.417224 CCGTCGTCGTCCTCGTCA 61.417 66.667 0.71 0.00 38.33 4.35
2852 6790 1.148157 CTCGTCATGATCGCCCACAC 61.148 60.000 0.00 0.00 0.00 3.82
2869 6808 5.353394 CCACACGGGCAGGTATATATATT 57.647 43.478 0.00 0.00 0.00 1.28
2870 6809 5.116180 CCACACGGGCAGGTATATATATTG 58.884 45.833 0.00 0.03 0.00 1.90
2876 6815 4.049186 GGCAGGTATATATATTGCCGACG 58.951 47.826 24.04 8.78 44.10 5.12
2886 6877 2.531927 ATTGCCGACGTTGCATGCTG 62.532 55.000 20.33 11.24 38.76 4.41
2888 6879 2.174107 CCGACGTTGCATGCTGTG 59.826 61.111 20.33 10.49 0.00 3.66
2920 6911 4.151157 GCGTTTGACTTAACTTACGGACAT 59.849 41.667 0.00 0.00 0.00 3.06
2921 6912 5.667156 GCGTTTGACTTAACTTACGGACATC 60.667 44.000 0.00 0.00 0.00 3.06
2922 6913 5.442390 CGTTTGACTTAACTTACGGACATCG 60.442 44.000 0.00 0.00 45.88 3.84
2947 6938 2.024868 CGGTTTCATCGGTCGCACA 61.025 57.895 0.00 0.00 0.00 4.57
2950 6941 1.359848 GTTTCATCGGTCGCACAGAT 58.640 50.000 0.00 0.00 33.33 2.90
2956 6947 3.374330 GGTCGCACAGATCGAACG 58.626 61.111 0.00 0.00 37.73 3.95
2957 6948 2.158959 GGTCGCACAGATCGAACGG 61.159 63.158 0.00 0.00 37.73 4.44
2958 6949 2.158959 GTCGCACAGATCGAACGGG 61.159 63.158 0.00 0.00 37.73 5.28
2960 6951 3.195698 GCACAGATCGAACGGGCC 61.196 66.667 0.00 0.00 0.00 5.80
2961 6952 2.264480 CACAGATCGAACGGGCCA 59.736 61.111 4.39 0.00 0.00 5.36
2964 6955 2.683933 AGATCGAACGGGCCACCT 60.684 61.111 4.39 0.00 33.28 4.00
2991 6982 2.265904 TGTACGTCGTCCTGCTGCT 61.266 57.895 0.00 0.00 0.00 4.24
3111 7134 0.740737 GGAAGATGCCATGTTTCCCG 59.259 55.000 6.37 0.00 34.38 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.976073 TGCAGGTGGGGTCTAGCTAC 60.976 60.000 0.00 0.00 0.00 3.58
1 2 0.687757 CTGCAGGTGGGGTCTAGCTA 60.688 60.000 5.57 0.00 0.00 3.32
2 3 1.992277 CTGCAGGTGGGGTCTAGCT 60.992 63.158 5.57 0.00 0.00 3.32
3 4 2.586792 CTGCAGGTGGGGTCTAGC 59.413 66.667 5.57 0.00 0.00 3.42
14 15 1.821216 ATGTCGGTTTTACCTGCAGG 58.179 50.000 31.60 31.60 35.66 4.85
15 16 2.676342 GGTATGTCGGTTTTACCTGCAG 59.324 50.000 6.78 6.78 35.66 4.41
16 17 2.303600 AGGTATGTCGGTTTTACCTGCA 59.696 45.455 0.23 0.00 43.15 4.41
17 18 2.934553 GAGGTATGTCGGTTTTACCTGC 59.065 50.000 5.63 0.00 44.44 4.85
18 19 3.197116 AGGAGGTATGTCGGTTTTACCTG 59.803 47.826 5.63 0.00 44.44 4.00
19 20 3.197116 CAGGAGGTATGTCGGTTTTACCT 59.803 47.826 0.62 0.62 46.51 3.08
20 21 3.528532 CAGGAGGTATGTCGGTTTTACC 58.471 50.000 0.00 0.00 36.45 2.85
21 22 2.934553 GCAGGAGGTATGTCGGTTTTAC 59.065 50.000 0.00 0.00 0.00 2.01
22 23 2.093341 GGCAGGAGGTATGTCGGTTTTA 60.093 50.000 0.00 0.00 0.00 1.52
23 24 1.339727 GGCAGGAGGTATGTCGGTTTT 60.340 52.381 0.00 0.00 0.00 2.43
24 25 0.252197 GGCAGGAGGTATGTCGGTTT 59.748 55.000 0.00 0.00 0.00 3.27
25 26 0.617820 AGGCAGGAGGTATGTCGGTT 60.618 55.000 0.00 0.00 0.00 4.44
26 27 1.001760 AGGCAGGAGGTATGTCGGT 59.998 57.895 0.00 0.00 0.00 4.69
27 28 1.742768 GAGGCAGGAGGTATGTCGG 59.257 63.158 0.00 0.00 0.00 4.79
29 30 0.755686 CAGGAGGCAGGAGGTATGTC 59.244 60.000 0.00 0.00 0.00 3.06
30 31 1.341156 GCAGGAGGCAGGAGGTATGT 61.341 60.000 0.00 0.00 43.97 2.29
31 32 1.449353 GCAGGAGGCAGGAGGTATG 59.551 63.158 0.00 0.00 43.97 2.39
32 33 3.978164 GCAGGAGGCAGGAGGTAT 58.022 61.111 0.00 0.00 43.97 2.73
41 42 1.471684 CATTCAACTGAAGCAGGAGGC 59.528 52.381 0.00 0.00 45.30 4.70
42 43 2.089980 CCATTCAACTGAAGCAGGAGG 58.910 52.381 0.00 0.00 37.48 4.30
44 45 1.704628 TCCCATTCAACTGAAGCAGGA 59.295 47.619 8.95 6.79 37.48 3.86
45 46 2.205022 TCCCATTCAACTGAAGCAGG 57.795 50.000 0.00 0.86 37.48 4.85
46 47 3.318839 TGTTTCCCATTCAACTGAAGCAG 59.681 43.478 0.00 0.00 37.48 4.24
47 48 3.295093 TGTTTCCCATTCAACTGAAGCA 58.705 40.909 0.00 0.00 37.48 3.91
48 49 4.051237 GTTGTTTCCCATTCAACTGAAGC 58.949 43.478 0.00 0.00 38.52 3.86
49 50 4.620982 GGTTGTTTCCCATTCAACTGAAG 58.379 43.478 0.00 0.00 40.52 3.02
53 54 1.960689 CCGGTTGTTTCCCATTCAACT 59.039 47.619 0.00 0.00 40.52 3.16
54 55 1.684450 ACCGGTTGTTTCCCATTCAAC 59.316 47.619 0.00 0.00 40.13 3.18
55 56 2.074729 ACCGGTTGTTTCCCATTCAA 57.925 45.000 0.00 0.00 0.00 2.69
56 57 2.074729 AACCGGTTGTTTCCCATTCA 57.925 45.000 21.56 0.00 31.47 2.57
57 58 4.794278 ATTAACCGGTTGTTTCCCATTC 57.206 40.909 30.08 0.00 38.42 2.67
58 59 6.860790 AATATTAACCGGTTGTTTCCCATT 57.139 33.333 30.08 14.73 38.42 3.16
61 62 6.293571 CGGATAATATTAACCGGTTGTTTCCC 60.294 42.308 30.08 17.18 42.98 3.97
71 72 5.395682 TCCAGTCCGGATAATATTAACCG 57.604 43.478 28.15 28.15 45.29 4.44
92 93 4.668138 ACTGAGAGGGAGGGAGTATATC 57.332 50.000 0.00 0.00 0.00 1.63
93 94 5.426325 AAACTGAGAGGGAGGGAGTATAT 57.574 43.478 0.00 0.00 0.00 0.86
94 95 4.901785 AAACTGAGAGGGAGGGAGTATA 57.098 45.455 0.00 0.00 0.00 1.47
95 96 3.786213 AAACTGAGAGGGAGGGAGTAT 57.214 47.619 0.00 0.00 0.00 2.12
96 97 3.335786 TGTAAACTGAGAGGGAGGGAGTA 59.664 47.826 0.00 0.00 0.00 2.59
97 98 2.111972 TGTAAACTGAGAGGGAGGGAGT 59.888 50.000 0.00 0.00 0.00 3.85
98 99 2.821437 TGTAAACTGAGAGGGAGGGAG 58.179 52.381 0.00 0.00 0.00 4.30
99 100 3.173965 CTTGTAAACTGAGAGGGAGGGA 58.826 50.000 0.00 0.00 0.00 4.20
101 102 2.355209 GCCTTGTAAACTGAGAGGGAGG 60.355 54.545 0.00 0.00 0.00 4.30
102 103 2.675317 CGCCTTGTAAACTGAGAGGGAG 60.675 54.545 0.00 0.00 0.00 4.30
103 104 1.275291 CGCCTTGTAAACTGAGAGGGA 59.725 52.381 0.00 0.00 0.00 4.20
104 105 1.002087 ACGCCTTGTAAACTGAGAGGG 59.998 52.381 0.00 0.00 0.00 4.30
105 106 2.069273 CACGCCTTGTAAACTGAGAGG 58.931 52.381 0.00 0.00 0.00 3.69
106 107 1.461127 GCACGCCTTGTAAACTGAGAG 59.539 52.381 0.00 0.00 0.00 3.20
107 108 1.508632 GCACGCCTTGTAAACTGAGA 58.491 50.000 0.00 0.00 0.00 3.27
108 109 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.000 0.00 0.00 0.00 3.35
109 110 1.837538 GCGCACGCCTTGTAAACTGA 61.838 55.000 0.30 0.00 34.56 3.41
110 111 1.440353 GCGCACGCCTTGTAAACTG 60.440 57.895 0.30 0.00 34.56 3.16
111 112 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
112 113 1.888958 TACGCGCACGCCTTGTAAAC 61.889 55.000 5.73 0.00 45.53 2.01
115 116 2.806198 GTACGCGCACGCCTTGTA 60.806 61.111 5.73 3.39 45.53 2.41
120 121 4.183686 TAGAGGTACGCGCACGCC 62.184 66.667 5.73 5.52 45.53 5.68
132 133 5.011090 TGATCAAATTGACGACCTAGAGG 57.989 43.478 0.00 0.00 42.17 3.69
134 135 5.046591 AGGTTGATCAAATTGACGACCTAGA 60.047 40.000 23.65 0.00 38.91 2.43
135 136 5.178797 AGGTTGATCAAATTGACGACCTAG 58.821 41.667 23.65 0.00 38.91 3.02
136 137 5.160607 AGGTTGATCAAATTGACGACCTA 57.839 39.130 23.65 2.75 38.91 3.08
138 139 5.873179 TTAGGTTGATCAAATTGACGACC 57.127 39.130 10.35 18.82 34.74 4.79
139 140 7.970384 TGTATTAGGTTGATCAAATTGACGAC 58.030 34.615 10.35 4.41 0.00 4.34
140 141 8.554835 TTGTATTAGGTTGATCAAATTGACGA 57.445 30.769 10.35 1.53 0.00 4.20
143 144 9.513906 TGACTTGTATTAGGTTGATCAAATTGA 57.486 29.630 10.35 0.00 0.00 2.57
196 197 9.840427 CCGTTTGAAAATAGAACATATGAAGTT 57.160 29.630 10.38 0.00 0.00 2.66
197 198 9.010029 ACCGTTTGAAAATAGAACATATGAAGT 57.990 29.630 10.38 0.00 0.00 3.01
250 251 8.859090 CCTATGTTGCCAATTTTATCATCCTAA 58.141 33.333 0.00 0.00 0.00 2.69
251 252 8.004215 ACCTATGTTGCCAATTTTATCATCCTA 58.996 33.333 0.00 0.00 0.00 2.94
253 254 7.054491 ACCTATGTTGCCAATTTTATCATCC 57.946 36.000 0.00 0.00 0.00 3.51
256 257 8.779303 CGTATACCTATGTTGCCAATTTTATCA 58.221 33.333 0.00 0.00 0.00 2.15
257 258 7.749126 GCGTATACCTATGTTGCCAATTTTATC 59.251 37.037 0.00 0.00 0.00 1.75
258 259 7.572353 CGCGTATACCTATGTTGCCAATTTTAT 60.572 37.037 0.00 0.00 0.00 1.40
259 260 6.292973 CGCGTATACCTATGTTGCCAATTTTA 60.293 38.462 0.00 0.00 0.00 1.52
261 262 4.024387 CGCGTATACCTATGTTGCCAATTT 60.024 41.667 0.00 0.00 0.00 1.82
262 263 3.496884 CGCGTATACCTATGTTGCCAATT 59.503 43.478 0.00 0.00 0.00 2.32
263 264 3.064207 CGCGTATACCTATGTTGCCAAT 58.936 45.455 0.00 0.00 0.00 3.16
265 266 1.870580 GCGCGTATACCTATGTTGCCA 60.871 52.381 8.43 0.00 0.00 4.92
267 268 1.455786 CTGCGCGTATACCTATGTTGC 59.544 52.381 8.43 0.00 0.00 4.17
270 271 1.268899 GTCCTGCGCGTATACCTATGT 59.731 52.381 8.43 0.00 0.00 2.29
272 273 1.906990 AGTCCTGCGCGTATACCTAT 58.093 50.000 8.43 0.00 0.00 2.57
273 274 1.335810 CAAGTCCTGCGCGTATACCTA 59.664 52.381 8.43 0.00 0.00 3.08
274 275 0.102481 CAAGTCCTGCGCGTATACCT 59.898 55.000 8.43 0.00 0.00 3.08
275 276 0.179119 ACAAGTCCTGCGCGTATACC 60.179 55.000 8.43 0.00 0.00 2.73
277 278 3.507103 TTTACAAGTCCTGCGCGTATA 57.493 42.857 8.43 0.00 0.00 1.47
278 279 2.373540 TTTACAAGTCCTGCGCGTAT 57.626 45.000 8.43 0.00 0.00 3.06
279 280 2.094390 AGATTTACAAGTCCTGCGCGTA 60.094 45.455 8.43 0.71 0.00 4.42
280 281 1.076332 GATTTACAAGTCCTGCGCGT 58.924 50.000 8.43 0.00 0.00 6.01
282 283 7.010552 CCATATATAGATTTACAAGTCCTGCGC 59.989 40.741 0.00 0.00 0.00 6.09
284 285 7.281100 GGCCATATATAGATTTACAAGTCCTGC 59.719 40.741 0.00 0.00 0.00 4.85
285 286 8.321353 TGGCCATATATAGATTTACAAGTCCTG 58.679 37.037 0.00 0.00 0.00 3.86
286 287 8.449423 TGGCCATATATAGATTTACAAGTCCT 57.551 34.615 0.00 0.00 0.00 3.85
295 296 7.995488 GCACCTAGATTGGCCATATATAGATTT 59.005 37.037 21.34 5.67 0.00 2.17
296 297 7.420680 GGCACCTAGATTGGCCATATATAGATT 60.421 40.741 21.34 11.29 45.70 2.40
297 298 6.043706 GGCACCTAGATTGGCCATATATAGAT 59.956 42.308 21.34 9.56 45.70 1.98
298 299 5.366768 GGCACCTAGATTGGCCATATATAGA 59.633 44.000 21.34 2.91 45.70 1.98
299 300 5.615289 GGCACCTAGATTGGCCATATATAG 58.385 45.833 6.09 13.46 45.70 1.31
301 302 4.510167 GGCACCTAGATTGGCCATATAT 57.490 45.455 6.09 0.00 45.70 0.86
303 304 2.887151 GGCACCTAGATTGGCCATAT 57.113 50.000 6.09 2.70 45.70 1.78
307 308 1.555967 TTTTGGCACCTAGATTGGCC 58.444 50.000 13.19 0.00 46.58 5.36
308 309 4.402474 ACTTATTTTGGCACCTAGATTGGC 59.598 41.667 9.99 9.99 39.92 4.52
312 313 8.320338 AGTAGTACTTATTTTGGCACCTAGAT 57.680 34.615 0.00 0.00 0.00 1.98
313 314 7.729124 AGTAGTACTTATTTTGGCACCTAGA 57.271 36.000 0.00 0.00 0.00 2.43
315 316 8.599624 ACTAGTAGTACTTATTTTGGCACCTA 57.400 34.615 8.40 0.00 0.00 3.08
316 317 7.492077 ACTAGTAGTACTTATTTTGGCACCT 57.508 36.000 8.40 0.00 0.00 4.00
339 340 8.552034 GGCCATAGATAATCAAGCGATTTATAC 58.448 37.037 0.00 0.00 42.06 1.47
340 341 8.264347 TGGCCATAGATAATCAAGCGATTTATA 58.736 33.333 0.00 0.00 42.06 0.98
343 344 5.316167 TGGCCATAGATAATCAAGCGATTT 58.684 37.500 0.00 0.00 42.06 2.17
344 345 4.910195 TGGCCATAGATAATCAAGCGATT 58.090 39.130 0.00 0.00 44.24 3.34
345 346 4.558226 TGGCCATAGATAATCAAGCGAT 57.442 40.909 0.00 0.00 0.00 4.58
346 347 4.350368 TTGGCCATAGATAATCAAGCGA 57.650 40.909 6.09 0.00 0.00 4.93
347 348 4.940046 AGATTGGCCATAGATAATCAAGCG 59.060 41.667 6.09 0.00 33.19 4.68
348 349 6.541641 CCTAGATTGGCCATAGATAATCAAGC 59.458 42.308 6.09 0.00 33.19 4.01
350 351 7.397221 CACCTAGATTGGCCATAGATAATCAA 58.603 38.462 6.09 0.00 33.19 2.57
351 352 6.577039 GCACCTAGATTGGCCATAGATAATCA 60.577 42.308 6.09 0.00 33.19 2.57
353 354 5.339530 GGCACCTAGATTGGCCATAGATAAT 60.340 44.000 6.09 0.00 45.70 1.28
354 355 4.019321 GGCACCTAGATTGGCCATAGATAA 60.019 45.833 6.09 0.00 45.70 1.75
355 356 3.519510 GGCACCTAGATTGGCCATAGATA 59.480 47.826 6.09 0.00 45.70 1.98
356 357 2.307098 GGCACCTAGATTGGCCATAGAT 59.693 50.000 6.09 0.00 45.70 1.98
358 359 2.191128 GGCACCTAGATTGGCCATAG 57.809 55.000 6.09 5.43 45.70 2.23
362 363 1.780503 AAATGGCACCTAGATTGGCC 58.219 50.000 13.19 0.00 46.58 5.36
363 364 5.770162 ACTATTAAATGGCACCTAGATTGGC 59.230 40.000 9.99 9.99 39.92 4.52
364 365 7.936847 TGTACTATTAAATGGCACCTAGATTGG 59.063 37.037 0.00 0.00 0.00 3.16
366 367 8.714906 ACTGTACTATTAAATGGCACCTAGATT 58.285 33.333 0.00 0.00 0.00 2.40
367 368 8.263854 ACTGTACTATTAAATGGCACCTAGAT 57.736 34.615 0.00 0.00 0.00 1.98
368 369 7.670605 ACTGTACTATTAAATGGCACCTAGA 57.329 36.000 0.00 0.00 0.00 2.43
369 370 8.088981 CCTACTGTACTATTAAATGGCACCTAG 58.911 40.741 0.00 0.00 0.00 3.02
370 371 7.785985 TCCTACTGTACTATTAAATGGCACCTA 59.214 37.037 0.00 0.00 0.00 3.08
371 372 6.614087 TCCTACTGTACTATTAAATGGCACCT 59.386 38.462 0.00 0.00 0.00 4.00
372 373 6.823497 TCCTACTGTACTATTAAATGGCACC 58.177 40.000 0.00 0.00 0.00 5.01
374 375 7.670605 ACTCCTACTGTACTATTAAATGGCA 57.329 36.000 0.00 0.00 0.00 4.92
375 376 7.813627 GCTACTCCTACTGTACTATTAAATGGC 59.186 40.741 0.00 0.00 0.00 4.40
376 377 8.857098 TGCTACTCCTACTGTACTATTAAATGG 58.143 37.037 0.00 0.00 0.00 3.16
382 383 9.381033 CGTATATGCTACTCCTACTGTACTATT 57.619 37.037 0.00 0.00 0.00 1.73
384 385 7.816513 CACGTATATGCTACTCCTACTGTACTA 59.183 40.741 0.00 0.00 0.00 1.82
385 386 6.649973 CACGTATATGCTACTCCTACTGTACT 59.350 42.308 0.00 0.00 0.00 2.73
386 387 6.128336 CCACGTATATGCTACTCCTACTGTAC 60.128 46.154 0.00 0.00 0.00 2.90
388 389 4.760715 CCACGTATATGCTACTCCTACTGT 59.239 45.833 0.00 0.00 0.00 3.55
389 390 4.760715 ACCACGTATATGCTACTCCTACTG 59.239 45.833 0.00 0.00 0.00 2.74
390 391 4.983053 ACCACGTATATGCTACTCCTACT 58.017 43.478 0.00 0.00 0.00 2.57
392 393 4.976864 TGACCACGTATATGCTACTCCTA 58.023 43.478 0.00 0.00 0.00 2.94
393 394 3.828921 TGACCACGTATATGCTACTCCT 58.171 45.455 0.00 0.00 0.00 3.69
394 395 4.579454 TTGACCACGTATATGCTACTCC 57.421 45.455 0.00 0.00 0.00 3.85
396 397 4.160814 TGGTTTGACCACGTATATGCTACT 59.839 41.667 0.00 0.00 44.79 2.57
397 398 4.435425 TGGTTTGACCACGTATATGCTAC 58.565 43.478 0.00 0.00 44.79 3.58
398 399 4.403113 TCTGGTTTGACCACGTATATGCTA 59.597 41.667 0.00 0.00 44.79 3.49
399 400 3.196901 TCTGGTTTGACCACGTATATGCT 59.803 43.478 0.00 0.00 44.79 3.79
402 403 8.092687 GGTATATTCTGGTTTGACCACGTATAT 58.907 37.037 0.00 5.31 44.79 0.86
403 404 7.069702 TGGTATATTCTGGTTTGACCACGTATA 59.930 37.037 0.00 0.00 44.79 1.47
404 405 6.126997 TGGTATATTCTGGTTTGACCACGTAT 60.127 38.462 0.00 0.00 44.79 3.06
405 406 5.187381 TGGTATATTCTGGTTTGACCACGTA 59.813 40.000 0.00 0.00 44.79 3.57
406 407 4.020039 TGGTATATTCTGGTTTGACCACGT 60.020 41.667 0.00 0.00 44.79 4.49
407 408 4.509616 TGGTATATTCTGGTTTGACCACG 58.490 43.478 0.00 0.00 44.79 4.94
410 411 4.755123 CGGATGGTATATTCTGGTTTGACC 59.245 45.833 0.00 0.00 39.22 4.02
411 412 5.365619 ACGGATGGTATATTCTGGTTTGAC 58.634 41.667 0.00 0.00 0.00 3.18
412 413 5.623956 ACGGATGGTATATTCTGGTTTGA 57.376 39.130 0.00 0.00 0.00 2.69
414 415 5.820947 GTCAACGGATGGTATATTCTGGTTT 59.179 40.000 0.00 0.00 0.00 3.27
415 416 5.104693 TGTCAACGGATGGTATATTCTGGTT 60.105 40.000 0.00 0.00 0.00 3.67
416 417 4.407621 TGTCAACGGATGGTATATTCTGGT 59.592 41.667 0.00 0.00 0.00 4.00
417 418 4.956085 TGTCAACGGATGGTATATTCTGG 58.044 43.478 0.00 0.00 0.00 3.86
418 419 6.918892 TTTGTCAACGGATGGTATATTCTG 57.081 37.500 0.00 0.00 0.00 3.02
420 421 7.490962 TGATTTGTCAACGGATGGTATATTC 57.509 36.000 0.00 0.00 0.00 1.75
421 422 7.502226 ACATGATTTGTCAACGGATGGTATATT 59.498 33.333 0.00 0.00 30.89 1.28
422 423 6.998074 ACATGATTTGTCAACGGATGGTATAT 59.002 34.615 0.00 0.00 30.89 0.86
424 425 5.192927 ACATGATTTGTCAACGGATGGTAT 58.807 37.500 0.00 0.00 30.89 2.73
425 426 4.584874 ACATGATTTGTCAACGGATGGTA 58.415 39.130 0.00 0.00 30.89 3.25
437 438 1.167851 CAGGGCGTGACATGATTTGT 58.832 50.000 0.00 0.00 42.79 2.83
438 439 1.131126 GACAGGGCGTGACATGATTTG 59.869 52.381 14.98 0.00 0.00 2.32
439 440 1.453155 GACAGGGCGTGACATGATTT 58.547 50.000 14.98 0.00 0.00 2.17
442 443 1.811645 TTCGACAGGGCGTGACATGA 61.812 55.000 14.98 3.08 0.00 3.07
443 444 0.948623 TTTCGACAGGGCGTGACATG 60.949 55.000 14.98 0.00 0.00 3.21
444 445 0.036388 ATTTCGACAGGGCGTGACAT 60.036 50.000 14.98 0.00 0.00 3.06
445 446 0.948623 CATTTCGACAGGGCGTGACA 60.949 55.000 14.98 0.00 0.00 3.58
449 450 1.375523 GTCCATTTCGACAGGGCGT 60.376 57.895 0.00 0.00 32.74 5.68
450 451 2.452813 CGTCCATTTCGACAGGGCG 61.453 63.158 9.20 9.20 44.60 6.13
451 452 2.106683 CCGTCCATTTCGACAGGGC 61.107 63.158 0.00 0.00 32.74 5.19
452 453 0.533491 TACCGTCCATTTCGACAGGG 59.467 55.000 0.00 0.00 33.49 4.45
453 454 2.373540 TTACCGTCCATTTCGACAGG 57.626 50.000 0.00 0.00 34.59 4.00
457 458 8.767085 GTGATATTAAATTACCGTCCATTTCGA 58.233 33.333 0.00 0.00 0.00 3.71
458 459 8.552865 TGTGATATTAAATTACCGTCCATTTCG 58.447 33.333 0.00 0.00 0.00 3.46
459 460 9.659830 GTGTGATATTAAATTACCGTCCATTTC 57.340 33.333 0.00 0.00 0.00 2.17
461 462 7.229907 GGGTGTGATATTAAATTACCGTCCATT 59.770 37.037 0.00 0.00 0.00 3.16
462 463 6.713450 GGGTGTGATATTAAATTACCGTCCAT 59.287 38.462 0.00 0.00 0.00 3.41
463 464 6.056884 GGGTGTGATATTAAATTACCGTCCA 58.943 40.000 0.00 0.00 0.00 4.02
465 466 7.739498 ATGGGTGTGATATTAAATTACCGTC 57.261 36.000 0.00 0.00 0.00 4.79
476 477 9.561069 GTAAGAAGTGATTATGGGTGTGATATT 57.439 33.333 0.00 0.00 0.00 1.28
479 480 6.069673 TGGTAAGAAGTGATTATGGGTGTGAT 60.070 38.462 0.00 0.00 0.00 3.06
480 481 5.249622 TGGTAAGAAGTGATTATGGGTGTGA 59.750 40.000 0.00 0.00 0.00 3.58
481 482 5.496556 TGGTAAGAAGTGATTATGGGTGTG 58.503 41.667 0.00 0.00 0.00 3.82
482 483 5.772393 TGGTAAGAAGTGATTATGGGTGT 57.228 39.130 0.00 0.00 0.00 4.16
483 484 6.595682 AGATGGTAAGAAGTGATTATGGGTG 58.404 40.000 0.00 0.00 0.00 4.61
484 485 6.183361 GGAGATGGTAAGAAGTGATTATGGGT 60.183 42.308 0.00 0.00 0.00 4.51
487 488 8.915057 ATTGGAGATGGTAAGAAGTGATTATG 57.085 34.615 0.00 0.00 0.00 1.90
490 491 9.401058 CTTAATTGGAGATGGTAAGAAGTGATT 57.599 33.333 0.00 0.00 0.00 2.57
492 493 8.146053 TCTTAATTGGAGATGGTAAGAAGTGA 57.854 34.615 0.00 0.00 29.99 3.41
493 494 8.970859 ATCTTAATTGGAGATGGTAAGAAGTG 57.029 34.615 5.62 0.00 35.16 3.16
495 496 7.928706 ACGATCTTAATTGGAGATGGTAAGAAG 59.071 37.037 15.00 4.09 39.70 2.85
496 497 7.792032 ACGATCTTAATTGGAGATGGTAAGAA 58.208 34.615 15.00 0.00 39.70 2.52
497 498 7.069455 TGACGATCTTAATTGGAGATGGTAAGA 59.931 37.037 15.95 3.56 40.96 2.10
498 499 7.169982 GTGACGATCTTAATTGGAGATGGTAAG 59.830 40.741 15.95 0.00 40.96 2.34
501 502 5.129485 AGTGACGATCTTAATTGGAGATGGT 59.871 40.000 15.93 15.93 42.72 3.55
502 503 5.605534 AGTGACGATCTTAATTGGAGATGG 58.394 41.667 9.96 10.80 34.13 3.51
503 504 7.169982 GGTAAGTGACGATCTTAATTGGAGATG 59.830 40.741 9.96 6.35 34.13 2.90
504 505 7.147724 TGGTAAGTGACGATCTTAATTGGAGAT 60.148 37.037 6.01 6.01 36.60 2.75
508 509 7.709182 TGTATGGTAAGTGACGATCTTAATTGG 59.291 37.037 0.00 0.00 0.00 3.16
509 510 8.642908 TGTATGGTAAGTGACGATCTTAATTG 57.357 34.615 0.00 0.00 0.00 2.32
510 511 9.095065 GTTGTATGGTAAGTGACGATCTTAATT 57.905 33.333 0.00 0.00 0.00 1.40
511 512 8.255206 TGTTGTATGGTAAGTGACGATCTTAAT 58.745 33.333 0.00 0.00 0.00 1.40
512 513 7.604549 TGTTGTATGGTAAGTGACGATCTTAA 58.395 34.615 0.00 0.00 0.00 1.85
514 515 6.032956 TGTTGTATGGTAAGTGACGATCTT 57.967 37.500 0.00 0.00 0.00 2.40
515 516 5.654603 TGTTGTATGGTAAGTGACGATCT 57.345 39.130 0.00 0.00 0.00 2.75
516 517 5.276868 GCATGTTGTATGGTAAGTGACGATC 60.277 44.000 0.00 0.00 0.00 3.69
517 518 4.570772 GCATGTTGTATGGTAAGTGACGAT 59.429 41.667 0.00 0.00 0.00 3.73
518 519 3.930229 GCATGTTGTATGGTAAGTGACGA 59.070 43.478 0.00 0.00 0.00 4.20
519 520 3.932710 AGCATGTTGTATGGTAAGTGACG 59.067 43.478 0.00 0.00 0.00 4.35
520 521 5.181245 ACAAGCATGTTGTATGGTAAGTGAC 59.819 40.000 10.65 0.00 35.91 3.67
523 524 5.560724 AGACAAGCATGTTGTATGGTAAGT 58.439 37.500 11.87 0.00 40.74 2.24
524 525 5.065218 GGAGACAAGCATGTTGTATGGTAAG 59.935 44.000 11.32 0.00 40.74 2.34
525 526 4.941263 GGAGACAAGCATGTTGTATGGTAA 59.059 41.667 11.32 0.00 40.74 2.85
526 527 4.513442 GGAGACAAGCATGTTGTATGGTA 58.487 43.478 11.32 0.00 40.74 3.25
527 528 3.347216 GGAGACAAGCATGTTGTATGGT 58.653 45.455 11.32 0.00 40.74 3.55
528 529 2.352651 CGGAGACAAGCATGTTGTATGG 59.647 50.000 11.32 2.82 40.74 2.74
532 533 2.479566 ATCGGAGACAAGCATGTTGT 57.520 45.000 11.77 11.77 42.51 3.32
533 534 3.310774 CCTTATCGGAGACAAGCATGTTG 59.689 47.826 0.00 0.53 40.17 3.33
534 535 3.535561 CCTTATCGGAGACAAGCATGTT 58.464 45.455 0.00 0.00 40.17 2.71
535 536 2.743183 GCCTTATCGGAGACAAGCATGT 60.743 50.000 0.00 0.00 40.17 3.21
536 537 1.869767 GCCTTATCGGAGACAAGCATG 59.130 52.381 0.00 0.00 40.17 4.06
540 541 3.068732 TCTCATGCCTTATCGGAGACAAG 59.931 47.826 0.00 0.00 41.37 3.16
543 544 3.951775 ATCTCATGCCTTATCGGAGAC 57.048 47.619 0.00 0.00 42.51 3.36
545 546 5.850557 AGATATCTCATGCCTTATCGGAG 57.149 43.478 0.00 0.00 33.16 4.63
547 548 5.297029 TCGTAGATATCTCATGCCTTATCGG 59.703 44.000 8.95 0.00 0.00 4.18
552 553 8.072321 ACATTATCGTAGATATCTCATGCCTT 57.928 34.615 8.95 0.00 45.12 4.35
553 554 7.652524 ACATTATCGTAGATATCTCATGCCT 57.347 36.000 8.95 0.00 45.12 4.75
554 555 8.709386 AAACATTATCGTAGATATCTCATGCC 57.291 34.615 8.95 0.00 45.12 4.40
555 556 9.964253 CAAAACATTATCGTAGATATCTCATGC 57.036 33.333 8.95 0.00 45.12 4.06
558 559 7.602644 GGCCAAAACATTATCGTAGATATCTCA 59.397 37.037 8.95 0.00 45.12 3.27
559 560 7.819900 AGGCCAAAACATTATCGTAGATATCTC 59.180 37.037 8.95 0.43 45.12 2.75
560 561 7.680730 AGGCCAAAACATTATCGTAGATATCT 58.319 34.615 10.73 10.73 45.12 1.98
561 562 7.907214 AGGCCAAAACATTATCGTAGATATC 57.093 36.000 5.01 0.00 45.12 1.63
562 563 9.959721 ATAAGGCCAAAACATTATCGTAGATAT 57.040 29.630 5.01 0.00 45.12 1.63
564 565 7.719633 ACATAAGGCCAAAACATTATCGTAGAT 59.280 33.333 5.01 0.00 45.12 1.98
565 566 7.051623 ACATAAGGCCAAAACATTATCGTAGA 58.948 34.615 5.01 0.00 45.75 2.59
566 567 7.011950 TGACATAAGGCCAAAACATTATCGTAG 59.988 37.037 5.01 0.00 0.00 3.51
567 568 6.824196 TGACATAAGGCCAAAACATTATCGTA 59.176 34.615 5.01 0.00 0.00 3.43
568 569 5.650266 TGACATAAGGCCAAAACATTATCGT 59.350 36.000 5.01 0.81 0.00 3.73
570 571 6.273071 GGTGACATAAGGCCAAAACATTATC 58.727 40.000 5.01 0.00 0.00 1.75
571 572 5.128663 GGGTGACATAAGGCCAAAACATTAT 59.871 40.000 5.01 0.00 0.00 1.28
573 574 3.260632 GGGTGACATAAGGCCAAAACATT 59.739 43.478 5.01 0.00 0.00 2.71
574 575 2.831526 GGGTGACATAAGGCCAAAACAT 59.168 45.455 5.01 0.00 0.00 2.71
575 576 2.243810 GGGTGACATAAGGCCAAAACA 58.756 47.619 5.01 0.00 0.00 2.83
576 577 1.201414 CGGGTGACATAAGGCCAAAAC 59.799 52.381 5.01 0.00 0.00 2.43
578 579 0.693622 TCGGGTGACATAAGGCCAAA 59.306 50.000 5.01 0.00 0.00 3.28
579 580 0.916086 ATCGGGTGACATAAGGCCAA 59.084 50.000 5.01 0.00 0.00 4.52
580 581 0.468226 GATCGGGTGACATAAGGCCA 59.532 55.000 5.01 0.00 0.00 5.36
582 583 1.940613 GTTGATCGGGTGACATAAGGC 59.059 52.381 0.00 0.00 0.00 4.35
583 584 2.093181 TGGTTGATCGGGTGACATAAGG 60.093 50.000 0.00 0.00 0.00 2.69
584 585 3.260475 TGGTTGATCGGGTGACATAAG 57.740 47.619 0.00 0.00 0.00 1.73
586 587 3.704800 TTTGGTTGATCGGGTGACATA 57.295 42.857 0.00 0.00 0.00 2.29
588 589 1.950909 GTTTTGGTTGATCGGGTGACA 59.049 47.619 0.00 0.00 0.00 3.58
589 590 1.950909 TGTTTTGGTTGATCGGGTGAC 59.049 47.619 0.00 0.00 0.00 3.67
592 593 4.185394 GTTTTTGTTTTGGTTGATCGGGT 58.815 39.130 0.00 0.00 0.00 5.28
593 594 4.184629 TGTTTTTGTTTTGGTTGATCGGG 58.815 39.130 0.00 0.00 0.00 5.14
594 595 5.786401 TTGTTTTTGTTTTGGTTGATCGG 57.214 34.783 0.00 0.00 0.00 4.18
596 597 6.899243 CGTCATTGTTTTTGTTTTGGTTGATC 59.101 34.615 0.00 0.00 0.00 2.92
597 598 6.591834 TCGTCATTGTTTTTGTTTTGGTTGAT 59.408 30.769 0.00 0.00 0.00 2.57
598 599 5.926542 TCGTCATTGTTTTTGTTTTGGTTGA 59.073 32.000 0.00 0.00 0.00 3.18
600 601 6.787085 TTCGTCATTGTTTTTGTTTTGGTT 57.213 29.167 0.00 0.00 0.00 3.67
601 602 6.591834 TGATTCGTCATTGTTTTTGTTTTGGT 59.408 30.769 0.00 0.00 0.00 3.67
602 603 6.998338 TGATTCGTCATTGTTTTTGTTTTGG 58.002 32.000 0.00 0.00 0.00 3.28
603 604 7.635587 CCTTGATTCGTCATTGTTTTTGTTTTG 59.364 33.333 0.00 0.00 0.00 2.44
604 605 7.547370 TCCTTGATTCGTCATTGTTTTTGTTTT 59.453 29.630 0.00 0.00 0.00 2.43
605 606 7.038659 TCCTTGATTCGTCATTGTTTTTGTTT 58.961 30.769 0.00 0.00 0.00 2.83
606 607 6.568869 TCCTTGATTCGTCATTGTTTTTGTT 58.431 32.000 0.00 0.00 0.00 2.83
607 608 6.142818 TCCTTGATTCGTCATTGTTTTTGT 57.857 33.333 0.00 0.00 0.00 2.83
608 609 6.917477 TCTTCCTTGATTCGTCATTGTTTTTG 59.083 34.615 0.00 0.00 0.00 2.44
609 610 7.038154 TCTTCCTTGATTCGTCATTGTTTTT 57.962 32.000 0.00 0.00 0.00 1.94
610 611 6.633500 TCTTCCTTGATTCGTCATTGTTTT 57.367 33.333 0.00 0.00 0.00 2.43
612 613 6.824305 AATCTTCCTTGATTCGTCATTGTT 57.176 33.333 0.00 0.00 31.72 2.83
613 614 6.824305 AAATCTTCCTTGATTCGTCATTGT 57.176 33.333 0.00 0.00 35.82 2.71
614 615 6.467047 CGAAAATCTTCCTTGATTCGTCATTG 59.533 38.462 0.00 0.00 35.82 2.82
615 616 6.149474 ACGAAAATCTTCCTTGATTCGTCATT 59.851 34.615 5.63 0.00 36.03 2.57
616 617 5.643777 ACGAAAATCTTCCTTGATTCGTCAT 59.356 36.000 5.63 0.00 36.03 3.06
619 620 7.429636 TTTACGAAAATCTTCCTTGATTCGT 57.570 32.000 14.53 14.53 40.61 3.85
620 621 8.788813 CATTTTACGAAAATCTTCCTTGATTCG 58.211 33.333 4.39 4.39 38.97 3.34
621 622 9.840427 TCATTTTACGAAAATCTTCCTTGATTC 57.160 29.630 0.00 0.00 38.97 2.52
626 627 9.810545 TGTTTTCATTTTACGAAAATCTTCCTT 57.189 25.926 0.00 0.00 42.54 3.36
627 628 9.463443 CTGTTTTCATTTTACGAAAATCTTCCT 57.537 29.630 0.00 0.00 42.54 3.36
629 630 8.699749 CCCTGTTTTCATTTTACGAAAATCTTC 58.300 33.333 0.00 0.00 42.54 2.87
630 631 7.655732 CCCCTGTTTTCATTTTACGAAAATCTT 59.344 33.333 0.00 0.00 42.54 2.40
631 632 7.151976 CCCCTGTTTTCATTTTACGAAAATCT 58.848 34.615 0.00 0.00 42.54 2.40
632 633 6.367695 CCCCCTGTTTTCATTTTACGAAAATC 59.632 38.462 0.00 0.00 42.54 2.17
633 634 6.227522 CCCCCTGTTTTCATTTTACGAAAAT 58.772 36.000 0.00 0.00 42.54 1.82
634 635 5.602628 CCCCCTGTTTTCATTTTACGAAAA 58.397 37.500 0.00 0.00 39.42 2.29
636 637 4.857509 CCCCCTGTTTTCATTTTACGAA 57.142 40.909 0.00 0.00 0.00 3.85
658 659 0.247460 GATCAAAAAGGGGCCACAGC 59.753 55.000 8.31 0.00 38.76 4.40
659 660 0.527565 CGATCAAAAAGGGGCCACAG 59.472 55.000 8.31 0.00 0.00 3.66
660 661 0.178975 ACGATCAAAAAGGGGCCACA 60.179 50.000 8.31 0.00 0.00 4.17
661 662 1.828979 TACGATCAAAAAGGGGCCAC 58.171 50.000 4.39 0.00 0.00 5.01
662 663 2.588464 TTACGATCAAAAAGGGGCCA 57.412 45.000 4.39 0.00 0.00 5.36
663 664 3.945981 TTTTACGATCAAAAAGGGGCC 57.054 42.857 0.00 0.00 0.00 5.80
685 686 7.675619 AGAAGATCACCCTTTGTATGGATTTTT 59.324 33.333 0.00 0.00 0.00 1.94
687 688 6.735556 AGAAGATCACCCTTTGTATGGATTT 58.264 36.000 0.00 0.00 0.00 2.17
689 690 5.983333 AGAAGATCACCCTTTGTATGGAT 57.017 39.130 0.00 0.00 0.00 3.41
692 693 7.824289 TCTTGTTAGAAGATCACCCTTTGTATG 59.176 37.037 0.00 0.00 0.00 2.39
694 695 7.311092 TCTTGTTAGAAGATCACCCTTTGTA 57.689 36.000 0.00 0.00 0.00 2.41
696 697 7.510549 TTTCTTGTTAGAAGATCACCCTTTG 57.489 36.000 0.00 0.00 41.25 2.77
698 699 8.712228 ATTTTTCTTGTTAGAAGATCACCCTT 57.288 30.769 0.00 0.00 41.25 3.95
700 701 7.176690 TGGATTTTTCTTGTTAGAAGATCACCC 59.823 37.037 0.00 0.00 41.25 4.61
701 702 8.023706 GTGGATTTTTCTTGTTAGAAGATCACC 58.976 37.037 0.00 0.00 41.25 4.02
702 703 8.567948 TGTGGATTTTTCTTGTTAGAAGATCAC 58.432 33.333 0.00 0.00 41.25 3.06
705 706 8.463930 TGTGTGGATTTTTCTTGTTAGAAGAT 57.536 30.769 0.00 0.00 41.25 2.40
707 708 8.405531 TCTTGTGTGGATTTTTCTTGTTAGAAG 58.594 33.333 0.00 0.00 41.25 2.85
708 709 8.287439 TCTTGTGTGGATTTTTCTTGTTAGAA 57.713 30.769 0.00 0.00 38.61 2.10
709 710 7.556275 ACTCTTGTGTGGATTTTTCTTGTTAGA 59.444 33.333 0.00 0.00 0.00 2.10
710 711 7.707104 ACTCTTGTGTGGATTTTTCTTGTTAG 58.293 34.615 0.00 0.00 0.00 2.34
712 713 6.530019 ACTCTTGTGTGGATTTTTCTTGTT 57.470 33.333 0.00 0.00 0.00 2.83
713 714 7.639113 TTACTCTTGTGTGGATTTTTCTTGT 57.361 32.000 0.00 0.00 0.00 3.16
714 715 8.925161 TTTTACTCTTGTGTGGATTTTTCTTG 57.075 30.769 0.00 0.00 0.00 3.02
715 716 8.197439 CCTTTTACTCTTGTGTGGATTTTTCTT 58.803 33.333 0.00 0.00 0.00 2.52
726 727 5.949952 ACTTTGTTCCCTTTTACTCTTGTGT 59.050 36.000 0.00 0.00 0.00 3.72
742 743 1.525619 CTCGACCCGTTCACTTTGTTC 59.474 52.381 0.00 0.00 0.00 3.18
746 747 2.607631 TTTCTCGACCCGTTCACTTT 57.392 45.000 0.00 0.00 0.00 2.66
749 750 2.347755 GCTATTTTCTCGACCCGTTCAC 59.652 50.000 0.00 0.00 0.00 3.18
772 773 5.022787 AGAACTGAGATAGACTTTCCTGCT 58.977 41.667 0.00 0.00 0.00 4.24
787 789 4.874966 GGATTGGAATGTCTGAGAACTGAG 59.125 45.833 0.00 0.00 0.00 3.35
789 791 4.394300 GTGGATTGGAATGTCTGAGAACTG 59.606 45.833 0.00 0.00 0.00 3.16
790 792 4.042062 TGTGGATTGGAATGTCTGAGAACT 59.958 41.667 0.00 0.00 0.00 3.01
791 793 4.326826 TGTGGATTGGAATGTCTGAGAAC 58.673 43.478 0.00 0.00 0.00 3.01
889 3471 0.541392 ATGCTTGATGGTCGTGCCTA 59.459 50.000 1.06 0.00 38.35 3.93
896 3478 3.921119 TGTGTTTGATGCTTGATGGTC 57.079 42.857 0.00 0.00 0.00 4.02
954 3549 3.686241 TGCTTGAAAGAATGGATGAGACG 59.314 43.478 0.00 0.00 0.00 4.18
955 3550 5.413833 TCTTGCTTGAAAGAATGGATGAGAC 59.586 40.000 0.00 0.00 33.25 3.36
956 3551 5.413833 GTCTTGCTTGAAAGAATGGATGAGA 59.586 40.000 0.00 0.00 37.90 3.27
957 3552 5.182570 TGTCTTGCTTGAAAGAATGGATGAG 59.817 40.000 0.00 0.00 37.90 2.90
958 3553 5.072055 TGTCTTGCTTGAAAGAATGGATGA 58.928 37.500 0.00 0.00 37.90 2.92
1046 3657 0.243095 GAGGAAAGTCACGTACGCCT 59.757 55.000 16.72 11.69 33.50 5.52
1187 3798 4.021925 AGCCCTGTTCGACCAGCC 62.022 66.667 4.12 0.00 0.00 4.85
1536 4187 2.159226 GCAGTAGCCGATCTTGTACTGT 60.159 50.000 18.75 0.00 42.87 3.55
1716 4367 3.181451 ACATGTTGAGAAAGTCCTGCTCA 60.181 43.478 0.00 0.00 36.92 4.26
1825 4478 0.468226 TGCACGACCTTGACCTTCTT 59.532 50.000 0.00 0.00 0.00 2.52
1934 4636 1.675641 GGCTTCGAACCCTGCACAT 60.676 57.895 9.05 0.00 0.00 3.21
1936 4641 1.600916 AAGGCTTCGAACCCTGCAC 60.601 57.895 12.79 0.97 0.00 4.57
1953 4658 3.234630 CTCGCCGGTGAACCTCCAA 62.235 63.158 20.06 0.00 0.00 3.53
1986 4691 1.767681 AGCATCTTGATGTCCTCCCTC 59.232 52.381 11.61 0.00 0.00 4.30
2207 5117 8.607459 AGAGTATAGTTCATTGCTGAAAATTCG 58.393 33.333 0.00 0.00 42.85 3.34
2298 5435 5.462405 TGCAAACTAAAACAAGAAACACGT 58.538 33.333 0.00 0.00 0.00 4.49
2322 5609 2.610374 GTGTACACGCCTCTGTTTTTCA 59.390 45.455 10.84 0.00 0.00 2.69
2329 5616 0.037326 ACATGGTGTACACGCCTCTG 60.037 55.000 19.41 13.34 46.36 3.35
2351 5638 9.557061 ACGTAACAAGAGTAGATCTATACATCA 57.443 33.333 5.57 0.00 37.23 3.07
2356 5643 8.972349 CACGTACGTAACAAGAGTAGATCTATA 58.028 37.037 22.34 0.00 37.23 1.31
2357 5644 7.493971 ACACGTACGTAACAAGAGTAGATCTAT 59.506 37.037 22.34 0.00 37.23 1.98
2358 5645 6.813649 ACACGTACGTAACAAGAGTAGATCTA 59.186 38.462 22.34 0.00 37.23 1.98
2359 5646 5.641209 ACACGTACGTAACAAGAGTAGATCT 59.359 40.000 22.34 0.00 41.27 2.75
2360 5647 5.862811 ACACGTACGTAACAAGAGTAGATC 58.137 41.667 22.34 0.00 0.00 2.75
2361 5648 5.869753 ACACGTACGTAACAAGAGTAGAT 57.130 39.130 22.34 0.00 0.00 1.98
2362 5649 6.968131 ATACACGTACGTAACAAGAGTAGA 57.032 37.500 22.34 0.00 0.00 2.59
2363 5650 8.360855 CAAAATACACGTACGTAACAAGAGTAG 58.639 37.037 22.34 7.05 0.00 2.57
2404 5754 8.647143 AACATGTACAATAATTTGCAATAGCC 57.353 30.769 0.00 0.00 41.13 3.93
2423 5775 4.201950 GCGGCATTCATAAGAAGAACATGT 60.202 41.667 0.00 0.00 37.14 3.21
2433 5785 1.369689 GCGCTGCGGCATTCATAAG 60.370 57.895 24.61 0.00 38.60 1.73
2434 5786 2.715005 GCGCTGCGGCATTCATAA 59.285 55.556 24.61 0.00 38.60 1.90
2450 5802 3.702555 AAACACGACAGAGCGCGC 61.703 61.111 26.66 26.66 33.86 6.86
2451 5803 2.168621 CAAACACGACAGAGCGCG 59.831 61.111 0.00 0.00 33.86 6.86
2452 5804 1.083401 CACAAACACGACAGAGCGC 60.083 57.895 0.00 0.00 33.86 5.92
2453 5805 0.043053 CACACAAACACGACAGAGCG 60.043 55.000 0.00 0.00 37.29 5.03
2522 6002 6.757010 TCCAAAGCTTTGCAAACGTTAATTAA 59.243 30.769 29.93 0.00 36.86 1.40
2525 6005 4.688021 TCCAAAGCTTTGCAAACGTTAAT 58.312 34.783 29.93 0.00 36.86 1.40
2529 6032 2.888834 ATCCAAAGCTTTGCAAACGT 57.111 40.000 29.93 10.95 36.86 3.99
2531 6034 7.095271 TGCTAATTAATCCAAAGCTTTGCAAAC 60.095 33.333 29.93 12.44 36.86 2.93
2554 6057 9.492973 AATGCTAATTTAACTTTTGACAATGCT 57.507 25.926 0.00 0.00 0.00 3.79
2555 6058 9.745323 GAATGCTAATTTAACTTTTGACAATGC 57.255 29.630 0.00 0.00 0.00 3.56
2556 6059 9.941991 CGAATGCTAATTTAACTTTTGACAATG 57.058 29.630 0.00 0.00 0.00 2.82
2557 6060 8.647226 GCGAATGCTAATTTAACTTTTGACAAT 58.353 29.630 0.00 0.00 38.39 2.71
2559 6062 6.584563 GGCGAATGCTAATTTAACTTTTGACA 59.415 34.615 0.00 0.00 42.25 3.58
2562 6065 6.942886 TGGCGAATGCTAATTTAACTTTTG 57.057 33.333 0.00 0.00 42.25 2.44
2563 6066 6.367695 GGTTGGCGAATGCTAATTTAACTTTT 59.632 34.615 0.00 0.00 43.83 2.27
2564 6067 5.867174 GGTTGGCGAATGCTAATTTAACTTT 59.133 36.000 0.00 0.00 43.83 2.66
2565 6068 5.047660 TGGTTGGCGAATGCTAATTTAACTT 60.048 36.000 0.00 0.00 43.83 2.66
2566 6069 4.461081 TGGTTGGCGAATGCTAATTTAACT 59.539 37.500 0.00 0.00 43.83 2.24
2567 6070 4.739195 TGGTTGGCGAATGCTAATTTAAC 58.261 39.130 0.00 0.00 43.83 2.01
2568 6071 5.392767 TTGGTTGGCGAATGCTAATTTAA 57.607 34.783 0.00 0.00 43.83 1.52
2569 6072 5.392767 TTTGGTTGGCGAATGCTAATTTA 57.607 34.783 0.00 0.00 43.83 1.40
2570 6073 3.951775 TTGGTTGGCGAATGCTAATTT 57.048 38.095 0.00 0.00 43.83 1.82
2571 6074 3.951775 TTTGGTTGGCGAATGCTAATT 57.048 38.095 0.00 0.00 43.83 1.40
2572 6075 3.951775 TTTTGGTTGGCGAATGCTAAT 57.048 38.095 0.00 0.00 43.83 1.73
2573 6076 3.367910 GGATTTTGGTTGGCGAATGCTAA 60.368 43.478 0.00 0.00 42.25 3.09
2574 6077 2.165437 GGATTTTGGTTGGCGAATGCTA 59.835 45.455 0.00 0.00 42.25 3.49
2575 6078 1.066929 GGATTTTGGTTGGCGAATGCT 60.067 47.619 0.00 0.00 42.25 3.79
2576 6079 1.337635 TGGATTTTGGTTGGCGAATGC 60.338 47.619 0.00 0.00 41.71 3.56
2577 6080 2.739885 TGGATTTTGGTTGGCGAATG 57.260 45.000 0.00 0.00 0.00 2.67
2578 6081 2.093553 CCATGGATTTTGGTTGGCGAAT 60.094 45.455 5.56 0.00 0.00 3.34
2579 6082 1.274728 CCATGGATTTTGGTTGGCGAA 59.725 47.619 5.56 0.00 0.00 4.70
2580 6083 0.894141 CCATGGATTTTGGTTGGCGA 59.106 50.000 5.56 0.00 0.00 5.54
2581 6084 0.740516 GCCATGGATTTTGGTTGGCG 60.741 55.000 18.40 0.00 42.97 5.69
2582 6085 3.157727 GCCATGGATTTTGGTTGGC 57.842 52.632 18.40 0.00 45.31 4.52
2584 6087 0.740516 GCCGCCATGGATTTTGGTTG 60.741 55.000 18.40 0.00 42.00 3.77
2587 6090 1.321805 TGAGCCGCCATGGATTTTGG 61.322 55.000 18.40 9.41 42.00 3.28
2601 6104 0.530870 GACTAGTCCGCCAATGAGCC 60.531 60.000 12.13 0.00 0.00 4.70
2608 6111 0.679002 AAGCTACGACTAGTCCGCCA 60.679 55.000 17.23 3.98 32.03 5.69
2609 6112 0.248539 CAAGCTACGACTAGTCCGCC 60.249 60.000 17.23 3.64 32.03 6.13
2610 6113 0.450983 ACAAGCTACGACTAGTCCGC 59.549 55.000 17.23 15.96 0.00 5.54
2687 6405 2.618045 CCCAGAATAGGAAAGCACCGTT 60.618 50.000 0.00 0.00 34.73 4.44
2738 6468 1.677576 ACGATTTAGATACGCCCGTCA 59.322 47.619 0.00 0.00 0.00 4.35
2801 6720 2.101770 GTAGACGTCCCGGCGAAG 59.898 66.667 13.01 6.42 41.28 3.79
2823 6761 1.580385 CATGACGAGGACGACGACG 60.580 63.158 5.58 5.58 42.66 5.12
2824 6762 0.377554 ATCATGACGAGGACGACGAC 59.622 55.000 0.00 0.00 42.66 4.34
2825 6763 0.656259 GATCATGACGAGGACGACGA 59.344 55.000 0.00 0.00 42.66 4.20
2826 6764 0.654760 CGATCATGACGAGGACGACG 60.655 60.000 0.00 0.00 42.66 5.12
2827 6765 0.930742 GCGATCATGACGAGGACGAC 60.931 60.000 17.91 0.00 42.66 4.34
2865 6804 0.029300 GCATGCAACGTCGGCAATAT 59.971 50.000 14.21 0.59 45.60 1.28
2866 6805 1.024046 AGCATGCAACGTCGGCAATA 61.024 50.000 21.98 0.00 45.60 1.90
2867 6806 2.179018 GCATGCAACGTCGGCAAT 59.821 55.556 14.21 5.42 45.60 3.56
2868 6807 2.977456 AGCATGCAACGTCGGCAA 60.977 55.556 21.98 3.50 45.60 4.52
2869 6808 3.725459 CAGCATGCAACGTCGGCA 61.725 61.111 21.98 15.93 46.66 5.69
2870 6809 3.726517 ACAGCATGCAACGTCGGC 61.727 61.111 21.98 5.30 42.53 5.54
2886 6877 3.228085 TCAAACGCTTTGAACGCAC 57.772 47.368 9.68 0.00 45.94 5.34
2920 6911 1.079405 GATGAAACCGGCCAGACGA 60.079 57.895 0.00 0.00 35.47 4.20
2921 6912 2.452813 CGATGAAACCGGCCAGACG 61.453 63.158 0.00 4.39 0.00 4.18
2922 6913 2.106683 CCGATGAAACCGGCCAGAC 61.107 63.158 0.00 0.00 40.54 3.51
2947 6938 2.683933 AGGTGGCCCGTTCGATCT 60.684 61.111 0.00 0.00 35.12 2.75
2950 6941 2.601067 TACAGGTGGCCCGTTCGA 60.601 61.111 0.00 0.00 35.12 3.71
2953 6944 1.880819 CGTACTACAGGTGGCCCGTT 61.881 60.000 0.00 0.00 35.12 4.44
2954 6945 2.345760 CGTACTACAGGTGGCCCGT 61.346 63.158 0.00 0.00 35.12 5.28
2956 6947 1.217244 CACGTACTACAGGTGGCCC 59.783 63.158 0.00 0.00 38.98 5.80
2957 6948 1.135286 GTACACGTACTACAGGTGGCC 60.135 57.143 0.00 0.00 45.37 5.36
2958 6949 1.466360 CGTACACGTACTACAGGTGGC 60.466 57.143 5.84 0.00 45.37 5.01
2991 6982 4.277239 CGGTCTGTTCATGCCGAA 57.723 55.556 1.39 0.00 46.33 4.30
3032 7038 4.858680 GCTTCCTAGGGCGGCCAC 62.859 72.222 31.59 10.38 0.00 5.01
3045 7051 2.223852 GCTACTGTGCCTACCTAGCTTC 60.224 54.545 0.00 0.00 32.92 3.86
3092 7111 0.740737 CGGGAAACATGGCATCTTCC 59.259 55.000 21.85 21.85 37.25 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.