Multiple sequence alignment - TraesCS2D01G092600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G092600 chr2D 100.000 4493 0 0 2636 7128 44076695 44081187 0.000000e+00 8298
1 TraesCS2D01G092600 chr2D 100.000 2250 0 0 1 2250 44074060 44076309 0.000000e+00 4156
2 TraesCS2D01G092600 chr2D 91.284 218 16 1 2765 2982 44076695 44076909 1.940000e-75 294
3 TraesCS2D01G092600 chr2D 91.284 218 16 1 2636 2850 44076824 44077041 1.940000e-75 294
4 TraesCS2D01G092600 chr2D 86.975 238 19 8 2640 2877 44076083 44076308 2.550000e-64 257
5 TraesCS2D01G092600 chr2D 86.975 238 19 8 2024 2249 44076699 44076936 2.550000e-64 257
6 TraesCS2D01G092600 chr2D 96.711 152 3 1 6979 7128 477749850 477750001 1.190000e-62 252
7 TraesCS2D01G092600 chr2D 96.711 152 3 1 6979 7128 491585936 491586087 1.190000e-62 252
8 TraesCS2D01G092600 chr2D 98.198 111 2 0 2636 2746 44076196 44076306 2.030000e-45 195
9 TraesCS2D01G092600 chr2D 98.198 111 2 0 2137 2247 44076695 44076805 2.030000e-45 195
10 TraesCS2D01G092600 chr2D 76.901 342 49 17 2643 2982 44075968 44076281 4.420000e-37 167
11 TraesCS2D01G092600 chr2D 76.901 342 49 17 1909 2222 44076702 44077041 4.420000e-37 167
12 TraesCS2D01G092600 chr2D 91.667 72 6 0 2911 2982 44076709 44076780 4.550000e-17 100
13 TraesCS2D01G092600 chr2D 91.667 72 6 0 2650 2721 44076970 44077041 4.550000e-17 100
14 TraesCS2D01G092600 chr2A 94.618 4329 128 46 2638 6934 47907562 47911817 0.000000e+00 6606
15 TraesCS2D01G092600 chr2A 90.362 1629 83 22 658 2250 47905957 47907547 0.000000e+00 2071
16 TraesCS2D01G092600 chr2A 91.931 347 22 3 2636 2982 47907434 47907774 1.390000e-131 481
17 TraesCS2D01G092600 chr2A 77.635 702 97 36 1582 2247 47906993 47907670 8.730000e-99 372
18 TraesCS2D01G092600 chr2A 88.153 287 28 2 2696 2982 47907365 47907645 3.190000e-88 337
19 TraesCS2D01G092600 chr2A 94.037 218 13 0 2636 2853 47907689 47907906 1.480000e-86 331
20 TraesCS2D01G092600 chr2A 80.080 497 55 29 197 674 47905467 47905938 5.330000e-86 329
21 TraesCS2D01G092600 chr2A 72.912 982 178 57 1322 2250 47906856 47907802 7.090000e-65 259
22 TraesCS2D01G092600 chr2A 77.650 349 49 20 1904 2225 47907560 47907906 1.220000e-42 185
23 TraesCS2D01G092600 chr2A 77.133 293 50 11 2685 2976 47907237 47907513 3.440000e-33 154
24 TraesCS2D01G092600 chr2A 92.135 89 7 0 2636 2724 47907818 47907906 7.510000e-25 126
25 TraesCS2D01G092600 chr2B 95.242 3972 105 29 2636 6568 69411370 69415296 0.000000e+00 6211
26 TraesCS2D01G092600 chr2B 87.927 2021 109 63 311 2250 69409388 69411354 0.000000e+00 2255
27 TraesCS2D01G092600 chr2B 95.137 329 15 1 6607 6934 69415299 69415627 1.060000e-142 518
28 TraesCS2D01G092600 chr2B 91.643 347 26 1 2636 2982 69411241 69411584 1.800000e-130 477
29 TraesCS2D01G092600 chr2B 77.033 701 102 35 1590 2250 69410802 69411483 1.470000e-91 348
30 TraesCS2D01G092600 chr2B 85.714 343 34 9 2640 2982 69411128 69411455 1.470000e-91 348
31 TraesCS2D01G092600 chr2B 91.743 218 18 0 2636 2853 69411499 69411716 3.230000e-78 303
32 TraesCS2D01G092600 chr2B 81.402 371 42 18 1899 2245 69411240 69411607 1.960000e-70 278
33 TraesCS2D01G092600 chr2B 89.604 202 15 4 6932 7128 69415706 69415906 1.190000e-62 252
34 TraesCS2D01G092600 chr6D 97.351 151 3 1 6979 7128 415727811 415727661 9.180000e-64 255
35 TraesCS2D01G092600 chr4D 97.351 151 3 1 6979 7128 38579853 38580003 9.180000e-64 255
36 TraesCS2D01G092600 chr4D 96.689 151 4 1 6979 7128 54783558 54783408 4.270000e-62 250
37 TraesCS2D01G092600 chr4D 93.478 92 3 2 6843 6934 19884733 19884645 4.490000e-27 134
38 TraesCS2D01G092600 chr7D 96.711 152 3 1 6979 7128 226033430 226033279 1.190000e-62 252
39 TraesCS2D01G092600 chr3D 96.711 152 3 1 6979 7128 60613570 60613721 1.190000e-62 252
40 TraesCS2D01G092600 chrUn 96.689 151 4 1 6979 7128 366709602 366709752 4.270000e-62 250
41 TraesCS2D01G092600 chr1D 93.617 94 3 2 6841 6934 51837452 51837542 3.470000e-28 137
42 TraesCS2D01G092600 chr5D 93.478 92 3 2 6843 6934 512407213 512407125 4.490000e-27 134
43 TraesCS2D01G092600 chr5A 93.478 92 3 2 6843 6934 85547256 85547168 4.490000e-27 134
44 TraesCS2D01G092600 chr5A 93.478 92 3 2 6843 6934 583991099 583991011 4.490000e-27 134
45 TraesCS2D01G092600 chr1B 93.478 92 3 2 6843 6934 633711469 633711381 4.490000e-27 134
46 TraesCS2D01G092600 chr1A 93.478 92 3 2 6843 6934 554476760 554476672 4.490000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G092600 chr2D 44074060 44081187 7127 False 2614.600000 8298 92.414800 1 7128 5 chr2D.!!$F3 7127
1 TraesCS2D01G092600 chr2A 47905467 47911817 6350 False 1199.333333 6606 83.386000 197 6934 9 chr2A.!!$F1 6737
2 TraesCS2D01G092600 chr2B 69409388 69415906 6518 False 1221.111111 6211 88.382778 311 7128 9 chr2B.!!$F1 6817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.036164 TTCGGGGGCGATGATAATGG 59.964 55.000 0.00 0.0 0.00 3.16 F
1785 1941 0.034896 GGTCGAGGAAGCAGGAACAA 59.965 55.000 0.00 0.0 0.00 2.83 F
1915 2071 0.031994 GGAGGAGCAAGAGATCGAGC 59.968 60.000 0.00 0.0 0.00 5.03 F
2910 3069 0.759346 AAGCAGGAGGACGAGTTTGT 59.241 50.000 0.00 0.0 0.00 2.83 F
2911 3070 0.759346 AGCAGGAGGACGAGTTTGTT 59.241 50.000 0.00 0.0 0.00 2.83 F
3469 3628 0.771127 CCAAGGTTGGGAGGAAGACA 59.229 55.000 0.27 0.0 44.70 3.41 F
4015 4174 1.076705 GGGGTTGAGGAATGCTCCC 60.077 63.158 0.00 0.0 43.64 4.30 F
5482 5644 0.040958 GCGGTCTGAGCAAACTGTTG 60.041 55.000 7.70 0.0 37.83 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1965 0.327867 TGCCCAATCCATCCTCCTCT 60.328 55.000 0.00 0.0 0.00 3.69 R
3281 3440 1.146982 CTTTCCCTTGGAAACCCTGGA 59.853 52.381 4.21 0.0 45.42 3.86 R
3469 3628 1.377994 CTCTGCAGTGCCTTCCCTT 59.622 57.895 14.67 0.0 0.00 3.95 R
4015 4174 0.643820 CGCGCTTTTCTACCCTAACG 59.356 55.000 5.56 0.0 0.00 3.18 R
4810 4972 0.763035 ACCCACCACAGTACCAGTTC 59.237 55.000 0.00 0.0 0.00 3.01 R
5446 5608 1.614903 CCGCTATACGTACCCAATGGA 59.385 52.381 0.00 0.0 41.42 3.41 R
5782 5950 1.341285 TGGCCAACAGCATAGCAGAAT 60.341 47.619 0.61 0.0 46.50 2.40 R
6806 7005 0.105778 GGGCAGCTAGCTCGAAATCT 59.894 55.000 16.15 0.0 44.79 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.897972 ACACGGCGATTCCCCTAC 59.102 61.111 16.62 0.00 0.00 3.18
18 19 1.684734 ACACGGCGATTCCCCTACT 60.685 57.895 16.62 0.00 0.00 2.57
19 20 1.227263 CACGGCGATTCCCCTACTG 60.227 63.158 16.62 0.00 0.00 2.74
20 21 1.684734 ACGGCGATTCCCCTACTGT 60.685 57.895 16.62 0.00 0.00 3.55
21 22 1.262640 ACGGCGATTCCCCTACTGTT 61.263 55.000 16.62 0.00 0.00 3.16
22 23 0.107848 CGGCGATTCCCCTACTGTTT 60.108 55.000 0.00 0.00 0.00 2.83
23 24 1.137479 CGGCGATTCCCCTACTGTTTA 59.863 52.381 0.00 0.00 0.00 2.01
24 25 2.419021 CGGCGATTCCCCTACTGTTTAA 60.419 50.000 0.00 0.00 0.00 1.52
25 26 3.743269 CGGCGATTCCCCTACTGTTTAAT 60.743 47.826 0.00 0.00 0.00 1.40
26 27 4.501915 CGGCGATTCCCCTACTGTTTAATA 60.502 45.833 0.00 0.00 0.00 0.98
27 28 4.753610 GGCGATTCCCCTACTGTTTAATAC 59.246 45.833 0.00 0.00 0.00 1.89
28 29 5.362263 GCGATTCCCCTACTGTTTAATACA 58.638 41.667 0.00 0.00 34.95 2.29
42 43 6.210078 TGTTTAATACAGCAAGGTTTTTCGG 58.790 36.000 0.00 0.00 31.68 4.30
43 44 3.934457 AATACAGCAAGGTTTTTCGGG 57.066 42.857 0.00 0.00 0.00 5.14
44 45 1.611519 TACAGCAAGGTTTTTCGGGG 58.388 50.000 0.00 0.00 0.00 5.73
45 46 1.112916 ACAGCAAGGTTTTTCGGGGG 61.113 55.000 0.00 0.00 0.00 5.40
46 47 2.207229 AGCAAGGTTTTTCGGGGGC 61.207 57.895 0.00 0.00 0.00 5.80
47 48 2.648454 CAAGGTTTTTCGGGGGCG 59.352 61.111 0.00 0.00 0.00 6.13
48 49 1.899534 CAAGGTTTTTCGGGGGCGA 60.900 57.895 0.00 0.00 0.00 5.54
49 50 1.076014 AAGGTTTTTCGGGGGCGAT 59.924 52.632 0.00 0.00 0.00 4.58
50 51 1.248101 AAGGTTTTTCGGGGGCGATG 61.248 55.000 0.00 0.00 0.00 3.84
51 52 1.676303 GGTTTTTCGGGGGCGATGA 60.676 57.895 0.00 0.00 0.00 2.92
52 53 1.035385 GGTTTTTCGGGGGCGATGAT 61.035 55.000 0.00 0.00 0.00 2.45
53 54 1.670791 GTTTTTCGGGGGCGATGATA 58.329 50.000 0.00 0.00 0.00 2.15
54 55 2.018515 GTTTTTCGGGGGCGATGATAA 58.981 47.619 0.00 0.00 0.00 1.75
55 56 2.621526 GTTTTTCGGGGGCGATGATAAT 59.378 45.455 0.00 0.00 0.00 1.28
56 57 1.890876 TTTCGGGGGCGATGATAATG 58.109 50.000 0.00 0.00 0.00 1.90
57 58 0.036164 TTCGGGGGCGATGATAATGG 59.964 55.000 0.00 0.00 0.00 3.16
58 59 2.040544 CGGGGGCGATGATAATGGC 61.041 63.158 0.00 0.00 0.00 4.40
59 60 2.040544 GGGGGCGATGATAATGGCG 61.041 63.158 0.00 0.00 0.00 5.69
60 61 1.302511 GGGGCGATGATAATGGCGT 60.303 57.895 0.00 0.00 0.00 5.68
61 62 1.577328 GGGGCGATGATAATGGCGTG 61.577 60.000 0.00 0.00 0.00 5.34
62 63 1.207593 GGCGATGATAATGGCGTGC 59.792 57.895 0.00 0.00 0.00 5.34
63 64 1.207593 GCGATGATAATGGCGTGCC 59.792 57.895 3.30 3.30 0.00 5.01
64 65 1.230635 GCGATGATAATGGCGTGCCT 61.231 55.000 12.84 0.00 36.94 4.75
65 66 1.229428 CGATGATAATGGCGTGCCTT 58.771 50.000 12.84 2.54 36.94 4.35
66 67 1.195448 CGATGATAATGGCGTGCCTTC 59.805 52.381 12.84 4.84 36.94 3.46
67 68 1.195448 GATGATAATGGCGTGCCTTCG 59.805 52.381 12.84 0.00 36.94 3.79
68 69 0.813610 TGATAATGGCGTGCCTTCGG 60.814 55.000 12.84 0.00 36.94 4.30
78 79 3.400007 GCCTTCGGCTCGCTTTAG 58.600 61.111 0.00 0.00 46.69 1.85
79 80 1.448013 GCCTTCGGCTCGCTTTAGT 60.448 57.895 0.00 0.00 46.69 2.24
80 81 1.696832 GCCTTCGGCTCGCTTTAGTG 61.697 60.000 0.00 0.00 46.69 2.74
81 82 1.084370 CCTTCGGCTCGCTTTAGTGG 61.084 60.000 0.00 0.00 0.00 4.00
82 83 1.696832 CTTCGGCTCGCTTTAGTGGC 61.697 60.000 0.00 0.00 0.00 5.01
83 84 2.125512 CGGCTCGCTTTAGTGGCT 60.126 61.111 0.00 0.00 0.00 4.75
84 85 2.456119 CGGCTCGCTTTAGTGGCTG 61.456 63.158 0.00 0.00 0.00 4.85
85 86 1.376037 GGCTCGCTTTAGTGGCTGT 60.376 57.895 0.00 0.00 0.00 4.40
86 87 0.108329 GGCTCGCTTTAGTGGCTGTA 60.108 55.000 0.00 0.00 0.00 2.74
87 88 1.281899 GCTCGCTTTAGTGGCTGTAG 58.718 55.000 0.00 0.00 0.00 2.74
88 89 1.404315 GCTCGCTTTAGTGGCTGTAGT 60.404 52.381 0.00 0.00 0.00 2.73
89 90 2.531206 CTCGCTTTAGTGGCTGTAGTC 58.469 52.381 0.00 0.00 0.00 2.59
90 91 1.135489 TCGCTTTAGTGGCTGTAGTCG 60.135 52.381 0.00 0.00 0.00 4.18
91 92 1.402456 CGCTTTAGTGGCTGTAGTCGT 60.402 52.381 0.00 0.00 0.00 4.34
92 93 2.260481 GCTTTAGTGGCTGTAGTCGTC 58.740 52.381 0.00 0.00 0.00 4.20
93 94 2.516923 CTTTAGTGGCTGTAGTCGTCG 58.483 52.381 0.00 0.00 0.00 5.12
94 95 0.169672 TTAGTGGCTGTAGTCGTCGC 59.830 55.000 0.00 0.00 0.00 5.19
95 96 0.675837 TAGTGGCTGTAGTCGTCGCT 60.676 55.000 0.00 0.00 0.00 4.93
96 97 0.675837 AGTGGCTGTAGTCGTCGCTA 60.676 55.000 0.00 0.00 0.00 4.26
97 98 0.522915 GTGGCTGTAGTCGTCGCTAC 60.523 60.000 15.52 15.52 41.13 3.58
98 99 0.956902 TGGCTGTAGTCGTCGCTACA 60.957 55.000 20.62 20.62 46.17 2.74
99 100 0.381089 GGCTGTAGTCGTCGCTACAT 59.619 55.000 21.53 0.00 46.81 2.29
100 101 1.467875 GCTGTAGTCGTCGCTACATG 58.532 55.000 21.53 17.51 46.81 3.21
101 102 1.063616 GCTGTAGTCGTCGCTACATGA 59.936 52.381 21.53 7.25 46.81 3.07
102 103 2.287069 GCTGTAGTCGTCGCTACATGAT 60.287 50.000 21.53 0.00 46.81 2.45
103 104 3.292423 CTGTAGTCGTCGCTACATGATG 58.708 50.000 21.53 11.71 46.81 3.07
104 105 2.032924 TGTAGTCGTCGCTACATGATGG 59.967 50.000 19.04 0.00 44.27 3.51
105 106 1.389555 AGTCGTCGCTACATGATGGA 58.610 50.000 0.00 0.00 0.00 3.41
106 107 1.957177 AGTCGTCGCTACATGATGGAT 59.043 47.619 0.00 0.00 0.00 3.41
107 108 2.030717 AGTCGTCGCTACATGATGGATC 60.031 50.000 0.00 0.00 0.00 3.36
108 109 1.069227 TCGTCGCTACATGATGGATCG 60.069 52.381 0.00 0.00 0.00 3.69
109 110 1.702886 GTCGCTACATGATGGATCGG 58.297 55.000 0.00 0.00 0.00 4.18
110 111 1.000163 GTCGCTACATGATGGATCGGT 60.000 52.381 0.00 0.00 0.00 4.69
111 112 2.228103 GTCGCTACATGATGGATCGGTA 59.772 50.000 0.00 0.00 0.00 4.02
112 113 2.228103 TCGCTACATGATGGATCGGTAC 59.772 50.000 0.00 0.00 0.00 3.34
134 135 9.924650 GGTACGTATTTCCATGTATCTTCTATT 57.075 33.333 0.00 0.00 0.00 1.73
179 180 4.693283 TCTGAAAGAAAAACTCGAGCAGA 58.307 39.130 13.61 10.67 42.31 4.26
180 181 4.747108 TCTGAAAGAAAAACTCGAGCAGAG 59.253 41.667 13.61 7.55 46.98 3.35
181 182 4.747108 CTGAAAGAAAAACTCGAGCAGAGA 59.253 41.667 13.61 0.00 43.44 3.10
182 183 5.107530 CTGAAAGAAAAACTCGAGCAGAGAG 60.108 44.000 13.61 8.58 43.44 3.20
183 184 7.227603 CTGAAAGAAAAACTCGAGCAGAGAGA 61.228 42.308 13.61 0.00 43.44 3.10
184 185 8.631559 CTGAAAGAAAAACTCGAGCAGAGAGAA 61.632 40.741 13.61 0.00 43.44 2.87
191 192 1.135915 TCGAGCAGAGAGAAGGAATGC 59.864 52.381 0.00 0.00 37.15 3.56
192 193 1.134877 CGAGCAGAGAGAAGGAATGCA 60.135 52.381 0.00 0.00 39.34 3.96
193 194 2.676176 CGAGCAGAGAGAAGGAATGCAA 60.676 50.000 0.00 0.00 39.34 4.08
194 195 2.937799 GAGCAGAGAGAAGGAATGCAAG 59.062 50.000 0.00 0.00 39.34 4.01
195 196 2.305343 AGCAGAGAGAAGGAATGCAAGT 59.695 45.455 0.00 0.00 39.34 3.16
203 204 2.486472 AGGAATGCAAGTCACCAGAG 57.514 50.000 0.00 0.00 28.43 3.35
209 210 6.058183 GGAATGCAAGTCACCAGAGTATTAT 58.942 40.000 0.00 0.00 28.43 1.28
256 257 2.741145 AGGAATCACTCGAGCTAACCT 58.259 47.619 13.61 12.13 0.00 3.50
260 261 4.442192 GGAATCACTCGAGCTAACCTTCAT 60.442 45.833 13.61 0.00 0.00 2.57
267 268 6.590292 CACTCGAGCTAACCTTCATCTTTTTA 59.410 38.462 13.61 0.00 0.00 1.52
269 270 8.475639 ACTCGAGCTAACCTTCATCTTTTTATA 58.524 33.333 13.61 0.00 0.00 0.98
270 271 9.482627 CTCGAGCTAACCTTCATCTTTTTATAT 57.517 33.333 0.00 0.00 0.00 0.86
294 295 5.427036 TTTTATGAGAAAAAGCGAACCGT 57.573 34.783 0.00 0.00 0.00 4.83
295 296 4.657075 TTATGAGAAAAAGCGAACCGTC 57.343 40.909 0.00 0.00 0.00 4.79
296 297 1.223187 TGAGAAAAAGCGAACCGTCC 58.777 50.000 0.00 0.00 0.00 4.79
297 298 0.516001 GAGAAAAAGCGAACCGTCCC 59.484 55.000 0.00 0.00 0.00 4.46
303 304 0.107848 AAGCGAACCGTCCCCTAATG 60.108 55.000 0.00 0.00 0.00 1.90
304 305 2.178235 GCGAACCGTCCCCTAATGC 61.178 63.158 0.00 0.00 0.00 3.56
321 322 4.418470 CAAACGTACGCCCGCACG 62.418 66.667 16.72 11.41 43.63 5.34
358 361 2.074576 GCCGGAGTAAACTTCAAGTCC 58.925 52.381 5.05 0.00 32.70 3.85
367 370 4.697756 TTCAAGTCCAGCGGCCGG 62.698 66.667 29.38 11.34 0.00 6.13
403 410 3.144120 CTCCCTCCTCGTGATGCCG 62.144 68.421 0.00 0.00 0.00 5.69
404 411 4.899239 CCCTCCTCGTGATGCCGC 62.899 72.222 0.00 0.00 0.00 6.53
405 412 4.899239 CCTCCTCGTGATGCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
469 476 0.324460 TCCGTTTCCTCCTCTCCTCC 60.324 60.000 0.00 0.00 0.00 4.30
472 479 0.043485 GTTTCCTCCTCTCCTCCCCT 59.957 60.000 0.00 0.00 0.00 4.79
487 494 3.798511 CCTTTCCCCTCTCGGCCC 61.799 72.222 0.00 0.00 0.00 5.80
489 496 3.009115 TTTCCCCTCTCGGCCCTG 61.009 66.667 0.00 0.00 0.00 4.45
544 574 4.179599 CCCCCTCCTCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
545 575 3.368501 CCCCTCCTCTCCCCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
546 576 2.787866 CCCTCCTCTCCCCTCCAA 59.212 66.667 0.00 0.00 0.00 3.53
591 621 4.867086 ACCCGATTCCATCCAAAATTACT 58.133 39.130 0.00 0.00 0.00 2.24
592 622 5.269189 ACCCGATTCCATCCAAAATTACTT 58.731 37.500 0.00 0.00 0.00 2.24
596 626 6.127479 CCGATTCCATCCAAAATTACTTCCAA 60.127 38.462 0.00 0.00 0.00 3.53
597 627 6.751888 CGATTCCATCCAAAATTACTTCCAAC 59.248 38.462 0.00 0.00 0.00 3.77
598 628 7.362920 CGATTCCATCCAAAATTACTTCCAACT 60.363 37.037 0.00 0.00 0.00 3.16
602 632 7.039784 TCCATCCAAAATTACTTCCAACTCAAG 60.040 37.037 0.00 0.00 0.00 3.02
603 633 6.648879 TCCAAAATTACTTCCAACTCAAGG 57.351 37.500 0.00 0.00 0.00 3.61
619 672 5.012893 ACTCAAGGAGGATTTGAATTCCAC 58.987 41.667 8.63 2.44 34.41 4.02
620 673 5.222213 ACTCAAGGAGGATTTGAATTCCACT 60.222 40.000 8.63 3.82 34.41 4.00
621 674 5.012239 TCAAGGAGGATTTGAATTCCACTG 58.988 41.667 8.63 0.00 31.98 3.66
622 675 3.359950 AGGAGGATTTGAATTCCACTGC 58.640 45.455 8.63 0.00 32.02 4.40
623 676 3.091545 GGAGGATTTGAATTCCACTGCA 58.908 45.455 8.63 0.00 0.00 4.41
624 677 3.129988 GGAGGATTTGAATTCCACTGCAG 59.870 47.826 13.48 13.48 0.00 4.41
625 678 2.494870 AGGATTTGAATTCCACTGCAGC 59.505 45.455 15.27 0.00 0.00 5.25
626 679 2.231964 GGATTTGAATTCCACTGCAGCA 59.768 45.455 15.27 0.00 0.00 4.41
627 680 3.508762 GATTTGAATTCCACTGCAGCAG 58.491 45.455 21.54 21.54 37.52 4.24
628 681 0.599558 TTGAATTCCACTGCAGCAGC 59.400 50.000 23.05 4.64 42.57 5.25
629 682 1.136147 GAATTCCACTGCAGCAGCG 59.864 57.895 23.05 13.29 46.23 5.18
670 723 1.255667 CCGTCGGGAAGGAAGGAAGA 61.256 60.000 2.34 0.00 37.72 2.87
672 725 1.404315 CGTCGGGAAGGAAGGAAGAAG 60.404 57.143 0.00 0.00 0.00 2.85
675 728 0.626382 GGGAAGGAAGGAAGAAGGGG 59.374 60.000 0.00 0.00 0.00 4.79
677 730 1.993301 GGAAGGAAGGAAGAAGGGGAA 59.007 52.381 0.00 0.00 0.00 3.97
678 731 2.291024 GGAAGGAAGGAAGAAGGGGAAC 60.291 54.545 0.00 0.00 0.00 3.62
727 834 3.165071 CCTATTTGGGTGCCTTTTGTCT 58.835 45.455 0.00 0.00 0.00 3.41
729 836 2.452600 TTTGGGTGCCTTTTGTCTCT 57.547 45.000 0.00 0.00 0.00 3.10
745 852 2.281070 CTCACTGTTGGGTGCGCT 60.281 61.111 9.73 0.00 37.16 5.92
794 904 1.074296 AGGCAAGTTTTCCCCCTCCT 61.074 55.000 0.00 0.00 0.00 3.69
819 929 0.328258 CACCCCGAAATGGAACTCCT 59.672 55.000 0.00 0.00 42.00 3.69
820 930 0.618981 ACCCCGAAATGGAACTCCTC 59.381 55.000 0.00 0.00 42.00 3.71
821 931 0.107165 CCCCGAAATGGAACTCCTCC 60.107 60.000 0.00 0.00 45.64 4.30
822 932 0.107165 CCCGAAATGGAACTCCTCCC 60.107 60.000 0.00 0.00 44.69 4.30
823 933 0.912486 CCGAAATGGAACTCCTCCCT 59.088 55.000 0.00 0.00 44.69 4.20
824 934 1.282157 CCGAAATGGAACTCCTCCCTT 59.718 52.381 0.00 0.00 44.69 3.95
825 935 2.633488 CGAAATGGAACTCCTCCCTTC 58.367 52.381 0.00 0.00 44.69 3.46
826 936 2.681097 CGAAATGGAACTCCTCCCTTCC 60.681 54.545 0.00 0.00 44.69 3.46
827 937 2.367947 AATGGAACTCCTCCCTTCCT 57.632 50.000 0.00 0.00 44.69 3.36
828 938 1.886422 ATGGAACTCCTCCCTTCCTC 58.114 55.000 0.00 0.00 44.69 3.71
829 939 0.793617 TGGAACTCCTCCCTTCCTCT 59.206 55.000 0.00 0.00 44.69 3.69
851 961 4.994282 TCCTCCTTCCTTTTTACCCTTTC 58.006 43.478 0.00 0.00 0.00 2.62
859 969 8.523658 CCTTCCTTTTTACCCTTTCTTATCTTG 58.476 37.037 0.00 0.00 0.00 3.02
964 1074 4.245660 TCGATTGATGGTTCAACTGACTC 58.754 43.478 0.00 0.00 44.36 3.36
1083 1200 4.990288 GTTGTGGACGAGGAGGAC 57.010 61.111 0.00 0.00 0.00 3.85
1088 1217 2.045143 GGACGAGGAGGACGAGGT 60.045 66.667 0.00 0.00 34.70 3.85
1098 1227 2.224917 GGAGGACGAGGTAGAGGATGAT 60.225 54.545 0.00 0.00 0.00 2.45
1113 1242 0.810031 ATGATGTTGAGTACGCGGCC 60.810 55.000 12.47 0.00 0.00 6.13
1218 1356 3.519930 GACGCGGAGGAGGAGGAC 61.520 72.222 12.47 0.00 0.00 3.85
1362 1506 1.744368 CGAGGAGGAGGACGACGAA 60.744 63.158 0.00 0.00 0.00 3.85
1450 1600 2.896443 GGAAGCAGGAGTCGGAGG 59.104 66.667 0.00 0.00 0.00 4.30
1768 1924 4.835891 CTCGCTCCCGGGGTAGGT 62.836 72.222 23.50 0.00 34.56 3.08
1771 1927 4.828296 GCTCCCGGGGTAGGTCGA 62.828 72.222 23.50 0.00 0.00 4.20
1783 1939 1.135053 GTAGGTCGAGGAAGCAGGAAC 60.135 57.143 0.00 0.00 0.00 3.62
1785 1941 0.034896 GGTCGAGGAAGCAGGAACAA 59.965 55.000 0.00 0.00 0.00 2.83
1915 2071 0.031994 GGAGGAGCAAGAGATCGAGC 59.968 60.000 0.00 0.00 0.00 5.03
1932 2088 2.617308 CGAGCCTGATGCAGATTTCAAT 59.383 45.455 0.00 0.00 44.83 2.57
2049 2208 1.855360 GAGTCTGATGCCGATTTCGAC 59.145 52.381 0.67 0.00 43.02 4.20
2076 2235 2.169561 GGAGGAGGAACTGGAGAATGAC 59.830 54.545 0.00 0.00 41.55 3.06
2077 2236 2.834549 GAGGAGGAACTGGAGAATGACA 59.165 50.000 0.00 0.00 41.55 3.58
2086 2245 3.648067 ACTGGAGAATGACAAGTTGGAGA 59.352 43.478 7.96 0.00 0.00 3.71
2089 2248 4.195416 GGAGAATGACAAGTTGGAGATCC 58.805 47.826 7.96 3.42 0.00 3.36
2118 2277 0.884704 TGTCAGCCAACTTTCGCTCC 60.885 55.000 0.00 0.00 31.40 4.70
2169 2328 5.648960 TGAGCTTGATGCAGATTTCAATGTA 59.351 36.000 1.13 0.00 45.94 2.29
2752 2911 1.204941 GTCAAGTATCGCTCTGGTGGT 59.795 52.381 0.00 0.00 0.00 4.16
2803 2962 3.093814 TGCAGATTTCAATGTGGCTGAT 58.906 40.909 0.00 0.00 30.94 2.90
2910 3069 0.759346 AAGCAGGAGGACGAGTTTGT 59.241 50.000 0.00 0.00 0.00 2.83
2911 3070 0.759346 AGCAGGAGGACGAGTTTGTT 59.241 50.000 0.00 0.00 0.00 2.83
2912 3071 0.868406 GCAGGAGGACGAGTTTGTTG 59.132 55.000 0.00 0.00 0.00 3.33
2931 3090 3.104519 TGATGCAGATTTCAATGGGGT 57.895 42.857 0.00 0.00 0.00 4.95
2982 3141 1.006043 TGAGGAGTTGGAGACCGAGAT 59.994 52.381 0.00 0.00 0.00 2.75
3002 3161 1.153549 CTACAGCCGAGGAACCTGC 60.154 63.158 0.00 0.00 0.00 4.85
3280 3439 1.893801 CACCGTAAGAGGAAGAGTGGT 59.106 52.381 0.00 0.00 43.02 4.16
3281 3440 2.299297 CACCGTAAGAGGAAGAGTGGTT 59.701 50.000 0.00 0.00 43.02 3.67
3282 3441 2.561858 ACCGTAAGAGGAAGAGTGGTTC 59.438 50.000 0.00 0.00 43.02 3.62
3283 3442 2.094130 CCGTAAGAGGAAGAGTGGTTCC 60.094 54.545 0.00 0.00 45.76 3.62
3288 3447 2.464582 GGAAGAGTGGTTCCAGGGT 58.535 57.895 0.00 0.00 44.89 4.34
3469 3628 0.771127 CCAAGGTTGGGAGGAAGACA 59.229 55.000 0.27 0.00 44.70 3.41
3725 3884 1.306997 CCTAGGCCCCAAGAGACCA 60.307 63.158 0.00 0.00 0.00 4.02
4015 4174 1.076705 GGGGTTGAGGAATGCTCCC 60.077 63.158 0.00 0.00 43.64 4.30
4335 4494 6.978080 CACGGAAATTTACCAATTTAGGGATG 59.022 38.462 0.00 0.00 41.79 3.51
4365 4524 4.353737 CATTACATCCACTTTGCCATTCG 58.646 43.478 0.00 0.00 0.00 3.34
4428 4587 7.797819 AGTAAGAGCTTTTCTTGTTGTATTCG 58.202 34.615 0.00 0.00 45.66 3.34
4470 4629 9.208022 TGTAAATCTGTAGATGTTGAGAACTTG 57.792 33.333 0.00 0.00 34.49 3.16
4471 4630 9.209175 GTAAATCTGTAGATGTTGAGAACTTGT 57.791 33.333 0.00 0.00 34.49 3.16
4472 4631 7.664082 AATCTGTAGATGTTGAGAACTTGTG 57.336 36.000 0.00 0.00 34.49 3.33
4473 4632 4.991056 TCTGTAGATGTTGAGAACTTGTGC 59.009 41.667 0.00 0.00 0.00 4.57
4564 4726 3.129638 TGAAACTTGTGCACTGGTTAACC 59.870 43.478 18.27 18.27 0.00 2.85
4804 4966 1.832366 GGTCTGGGAAGAGAAGTACCC 59.168 57.143 0.00 0.00 42.37 3.69
4946 5108 2.000447 GTTCGTTGGGCAGATCTACAC 59.000 52.381 0.00 0.00 0.00 2.90
5240 5402 5.278266 GGAACAGAACAAAATCAACGGATCA 60.278 40.000 0.00 0.00 31.88 2.92
5446 5608 4.079446 CACATTTGTGCCCGGTCT 57.921 55.556 0.00 0.00 39.39 3.85
5482 5644 0.040958 GCGGTCTGAGCAAACTGTTG 60.041 55.000 7.70 0.00 37.83 3.33
5495 5657 7.589587 TGAGCAAACTGTTGTTTTAATGTATCG 59.410 33.333 0.00 0.00 43.13 2.92
5501 5663 8.964420 ACTGTTGTTTTAATGTATCGATTTGG 57.036 30.769 1.71 0.00 0.00 3.28
5502 5664 8.026607 ACTGTTGTTTTAATGTATCGATTTGGG 58.973 33.333 1.71 0.00 0.00 4.12
5503 5665 8.112016 TGTTGTTTTAATGTATCGATTTGGGA 57.888 30.769 1.71 0.00 0.00 4.37
5504 5666 8.240682 TGTTGTTTTAATGTATCGATTTGGGAG 58.759 33.333 1.71 0.00 0.00 4.30
5505 5667 6.791303 TGTTTTAATGTATCGATTTGGGAGC 58.209 36.000 1.71 0.00 0.00 4.70
5506 5668 6.375736 TGTTTTAATGTATCGATTTGGGAGCA 59.624 34.615 1.71 0.00 0.00 4.26
5507 5669 6.371809 TTTAATGTATCGATTTGGGAGCAC 57.628 37.500 1.71 0.00 0.00 4.40
5524 5688 2.952978 AGCACCCACGTTTAACATTTGA 59.047 40.909 0.00 0.00 0.00 2.69
5568 5732 8.276453 AGCCTTAACATATTAGATTACCCAGT 57.724 34.615 0.00 0.00 0.00 4.00
5579 5743 5.263968 AGATTACCCAGTGATTGAGTACG 57.736 43.478 0.00 0.00 0.00 3.67
5580 5744 3.880047 TTACCCAGTGATTGAGTACGG 57.120 47.619 0.00 0.00 0.00 4.02
5581 5745 1.640917 ACCCAGTGATTGAGTACGGT 58.359 50.000 0.00 0.00 0.00 4.83
5582 5746 2.811410 ACCCAGTGATTGAGTACGGTA 58.189 47.619 0.00 0.00 0.00 4.02
5583 5747 3.371965 ACCCAGTGATTGAGTACGGTAT 58.628 45.455 0.00 0.00 0.00 2.73
5584 5748 3.132289 ACCCAGTGATTGAGTACGGTATG 59.868 47.826 0.00 0.00 0.00 2.39
5585 5749 3.123804 CCAGTGATTGAGTACGGTATGC 58.876 50.000 0.00 0.00 0.00 3.14
5586 5750 3.181475 CCAGTGATTGAGTACGGTATGCT 60.181 47.826 0.00 0.00 0.00 3.79
5587 5751 4.045104 CAGTGATTGAGTACGGTATGCTC 58.955 47.826 0.00 0.00 40.32 4.26
5588 5752 3.954904 AGTGATTGAGTACGGTATGCTCT 59.045 43.478 7.15 0.00 40.53 4.09
5589 5753 4.045104 GTGATTGAGTACGGTATGCTCTG 58.955 47.826 7.15 0.00 40.53 3.35
5590 5754 3.951680 TGATTGAGTACGGTATGCTCTGA 59.048 43.478 7.15 0.00 40.53 3.27
5591 5755 4.401202 TGATTGAGTACGGTATGCTCTGAA 59.599 41.667 7.15 0.00 40.53 3.02
5592 5756 4.794278 TTGAGTACGGTATGCTCTGAAA 57.206 40.909 7.15 0.00 40.53 2.69
5593 5757 5.339008 TTGAGTACGGTATGCTCTGAAAT 57.661 39.130 7.15 0.00 40.53 2.17
5594 5758 5.339008 TGAGTACGGTATGCTCTGAAATT 57.661 39.130 7.15 0.00 40.53 1.82
5595 5759 6.459670 TGAGTACGGTATGCTCTGAAATTA 57.540 37.500 7.15 0.00 40.53 1.40
5596 5760 7.050970 TGAGTACGGTATGCTCTGAAATTAT 57.949 36.000 7.15 0.00 40.53 1.28
5597 5761 8.173542 TGAGTACGGTATGCTCTGAAATTATA 57.826 34.615 7.15 0.00 40.53 0.98
5598 5762 8.803235 TGAGTACGGTATGCTCTGAAATTATAT 58.197 33.333 7.15 0.00 40.53 0.86
5599 5763 8.988064 AGTACGGTATGCTCTGAAATTATATG 57.012 34.615 0.00 0.00 0.00 1.78
5600 5764 8.803235 AGTACGGTATGCTCTGAAATTATATGA 58.197 33.333 0.00 0.00 0.00 2.15
5601 5765 7.891183 ACGGTATGCTCTGAAATTATATGAC 57.109 36.000 0.00 0.00 0.00 3.06
5602 5766 7.671302 ACGGTATGCTCTGAAATTATATGACT 58.329 34.615 0.00 0.00 0.00 3.41
5603 5767 7.815068 ACGGTATGCTCTGAAATTATATGACTC 59.185 37.037 0.00 0.00 0.00 3.36
5685 5850 2.551459 GACATCATCCCATTGTAGCAGC 59.449 50.000 0.00 0.00 0.00 5.25
5702 5867 2.497273 GCAGCTGTGGTCCCAAAATAAT 59.503 45.455 16.64 0.00 0.00 1.28
5704 5869 4.159506 GCAGCTGTGGTCCCAAAATAATTA 59.840 41.667 16.64 0.00 0.00 1.40
5706 5871 6.332630 CAGCTGTGGTCCCAAAATAATTAAG 58.667 40.000 5.25 0.00 0.00 1.85
5707 5872 6.016555 AGCTGTGGTCCCAAAATAATTAAGT 58.983 36.000 0.00 0.00 0.00 2.24
5708 5873 7.122055 CAGCTGTGGTCCCAAAATAATTAAGTA 59.878 37.037 5.25 0.00 0.00 2.24
5709 5874 7.339466 AGCTGTGGTCCCAAAATAATTAAGTAG 59.661 37.037 0.00 0.00 0.00 2.57
5710 5875 7.399245 TGTGGTCCCAAAATAATTAAGTAGC 57.601 36.000 0.00 0.00 0.00 3.58
5734 5902 6.989169 GCCATCTATACTGAAAATGTGTCTCT 59.011 38.462 0.00 0.00 0.00 3.10
5809 5987 1.921982 ATGCTGTTGGCCATTGTACA 58.078 45.000 6.09 7.11 40.92 2.90
5823 6001 5.335583 GCCATTGTACACTGAACTAAATGCA 60.336 40.000 14.33 0.00 0.00 3.96
5836 6014 6.262049 TGAACTAAATGCAAAAGACAGCTGTA 59.738 34.615 21.73 1.79 0.00 2.74
5839 6017 8.335532 ACTAAATGCAAAAGACAGCTGTATTA 57.664 30.769 25.84 11.70 0.00 0.98
5844 6022 5.639506 TGCAAAAGACAGCTGTATTAGACTC 59.360 40.000 25.84 13.92 0.00 3.36
5846 6024 6.183360 GCAAAAGACAGCTGTATTAGACTCTG 60.183 42.308 25.84 16.14 36.24 3.35
5847 6025 4.647424 AGACAGCTGTATTAGACTCTGC 57.353 45.455 21.73 2.18 34.65 4.26
5849 6027 4.464244 AGACAGCTGTATTAGACTCTGCAA 59.536 41.667 21.73 0.00 34.65 4.08
5850 6028 5.128499 AGACAGCTGTATTAGACTCTGCAAT 59.872 40.000 21.73 0.00 34.65 3.56
5852 6030 5.128499 ACAGCTGTATTAGACTCTGCAATCT 59.872 40.000 20.16 0.00 34.65 2.40
5853 6031 6.047870 CAGCTGTATTAGACTCTGCAATCTT 58.952 40.000 5.25 0.00 0.00 2.40
5881 6074 9.853177 CTATTTAACTGGGATTAACCTCTCATT 57.147 33.333 0.00 0.00 38.98 2.57
5926 6119 1.803922 CACGAATGTAGCACGGCGA 60.804 57.895 16.62 0.00 0.00 5.54
5956 6149 3.119101 ACACTATCTTAGCGTTGTCTGGG 60.119 47.826 0.00 0.00 0.00 4.45
5962 6155 0.323302 TAGCGTTGTCTGGGATTGCA 59.677 50.000 0.00 0.00 0.00 4.08
6376 6569 3.493334 TCAATGATGATGCCCTCCAATC 58.507 45.455 0.00 0.00 0.00 2.67
6484 6679 7.986320 AGAAGTGGAGCATCTTATATATCATGC 59.014 37.037 14.52 14.52 41.72 4.06
6619 6818 0.378610 TGTGCGAGTCTGCTAGATCG 59.621 55.000 0.00 0.00 38.19 3.69
6766 6965 1.605710 CTTGTCTGCACTTGGTGAAGG 59.394 52.381 5.90 0.00 39.55 3.46
6787 6986 2.122768 CCCCTCTCATAACTGAAGCCT 58.877 52.381 0.00 0.00 0.00 4.58
6806 7005 3.659786 CCTGGCGGTATTCGATTTATCA 58.340 45.455 0.00 0.00 42.43 2.15
6872 7071 4.085733 TCCTCTTCTGAGTCTTCCTCTTG 58.914 47.826 0.00 0.00 41.11 3.02
6960 7241 8.223769 CGTGCAGATTAACCTATTGTTGATATC 58.776 37.037 0.00 0.00 37.83 1.63
6966 7247 7.496529 TTAACCTATTGTTGATATCAGCTGC 57.503 36.000 18.83 6.45 37.83 5.25
6979 7260 1.086634 CAGCTGCTTAACTCCCGAGC 61.087 60.000 0.00 0.00 36.95 5.03
6993 7274 3.554934 TCCCGAGCTCATGCAATTATTT 58.445 40.909 15.40 0.00 42.74 1.40
7001 7282 7.186570 AGCTCATGCAATTATTTAAGGGTTT 57.813 32.000 0.00 0.00 42.74 3.27
7019 7300 8.628630 AAGGGTTTATCTTCTCTCTCTTTTTG 57.371 34.615 0.00 0.00 0.00 2.44
7091 7375 3.004752 ACCTCTTTGTGCAAGACTTGT 57.995 42.857 16.39 0.00 36.51 3.16
7095 7379 5.417580 ACCTCTTTGTGCAAGACTTGTAAAA 59.582 36.000 16.39 10.67 36.51 1.52
7096 7380 6.071616 ACCTCTTTGTGCAAGACTTGTAAAAA 60.072 34.615 17.49 17.49 36.51 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.684734 AGTAGGGGAATCGCCGTGT 60.685 57.895 10.80 0.00 41.60 4.49
1 2 1.227263 CAGTAGGGGAATCGCCGTG 60.227 63.158 10.80 6.38 41.60 4.94
2 3 1.262640 AACAGTAGGGGAATCGCCGT 61.263 55.000 10.80 0.00 41.60 5.68
3 4 0.107848 AAACAGTAGGGGAATCGCCG 60.108 55.000 10.80 0.00 41.60 6.46
4 5 2.994186 TAAACAGTAGGGGAATCGCC 57.006 50.000 8.44 8.44 36.67 5.54
5 6 5.362263 TGTATTAAACAGTAGGGGAATCGC 58.638 41.667 0.00 0.00 33.01 4.58
18 19 6.210078 CCGAAAAACCTTGCTGTATTAAACA 58.790 36.000 0.00 0.00 36.42 2.83
19 20 5.631929 CCCGAAAAACCTTGCTGTATTAAAC 59.368 40.000 0.00 0.00 0.00 2.01
20 21 5.279056 CCCCGAAAAACCTTGCTGTATTAAA 60.279 40.000 0.00 0.00 0.00 1.52
21 22 4.218852 CCCCGAAAAACCTTGCTGTATTAA 59.781 41.667 0.00 0.00 0.00 1.40
22 23 3.759618 CCCCGAAAAACCTTGCTGTATTA 59.240 43.478 0.00 0.00 0.00 0.98
23 24 2.560981 CCCCGAAAAACCTTGCTGTATT 59.439 45.455 0.00 0.00 0.00 1.89
24 25 2.167662 CCCCGAAAAACCTTGCTGTAT 58.832 47.619 0.00 0.00 0.00 2.29
25 26 1.611519 CCCCGAAAAACCTTGCTGTA 58.388 50.000 0.00 0.00 0.00 2.74
26 27 1.112916 CCCCCGAAAAACCTTGCTGT 61.113 55.000 0.00 0.00 0.00 4.40
27 28 1.665442 CCCCCGAAAAACCTTGCTG 59.335 57.895 0.00 0.00 0.00 4.41
28 29 2.207229 GCCCCCGAAAAACCTTGCT 61.207 57.895 0.00 0.00 0.00 3.91
29 30 2.342279 GCCCCCGAAAAACCTTGC 59.658 61.111 0.00 0.00 0.00 4.01
30 31 1.899534 TCGCCCCCGAAAAACCTTG 60.900 57.895 0.00 0.00 41.17 3.61
31 32 2.516909 TCGCCCCCGAAAAACCTT 59.483 55.556 0.00 0.00 41.17 3.50
40 41 2.040544 GCCATTATCATCGCCCCCG 61.041 63.158 0.00 0.00 0.00 5.73
41 42 2.040544 CGCCATTATCATCGCCCCC 61.041 63.158 0.00 0.00 0.00 5.40
42 43 1.302511 ACGCCATTATCATCGCCCC 60.303 57.895 0.00 0.00 0.00 5.80
43 44 1.868997 CACGCCATTATCATCGCCC 59.131 57.895 0.00 0.00 0.00 6.13
44 45 1.207593 GCACGCCATTATCATCGCC 59.792 57.895 0.00 0.00 0.00 5.54
45 46 1.207593 GGCACGCCATTATCATCGC 59.792 57.895 2.36 0.00 35.81 4.58
46 47 1.195448 GAAGGCACGCCATTATCATCG 59.805 52.381 11.35 0.00 38.92 3.84
47 48 1.195448 CGAAGGCACGCCATTATCATC 59.805 52.381 11.35 0.00 38.92 2.92
48 49 1.229428 CGAAGGCACGCCATTATCAT 58.771 50.000 11.35 0.00 38.92 2.45
49 50 0.813610 CCGAAGGCACGCCATTATCA 60.814 55.000 11.35 0.00 46.14 2.15
50 51 1.941812 CCGAAGGCACGCCATTATC 59.058 57.895 11.35 2.29 46.14 1.75
51 52 4.141144 CCGAAGGCACGCCATTAT 57.859 55.556 11.35 0.00 46.14 1.28
63 64 1.696832 GCCACTAAAGCGAGCCGAAG 61.697 60.000 0.00 0.00 0.00 3.79
64 65 1.740296 GCCACTAAAGCGAGCCGAA 60.740 57.895 0.00 0.00 0.00 4.30
65 66 2.125673 GCCACTAAAGCGAGCCGA 60.126 61.111 0.00 0.00 0.00 5.54
66 67 2.125512 AGCCACTAAAGCGAGCCG 60.126 61.111 0.00 0.00 34.64 5.52
67 68 0.108329 TACAGCCACTAAAGCGAGCC 60.108 55.000 0.00 0.00 34.64 4.70
68 69 1.281899 CTACAGCCACTAAAGCGAGC 58.718 55.000 0.00 0.00 34.64 5.03
69 70 2.531206 GACTACAGCCACTAAAGCGAG 58.469 52.381 0.00 0.00 34.64 5.03
70 71 1.135489 CGACTACAGCCACTAAAGCGA 60.135 52.381 0.00 0.00 34.64 4.93
71 72 1.269166 CGACTACAGCCACTAAAGCG 58.731 55.000 0.00 0.00 34.64 4.68
72 73 2.260481 GACGACTACAGCCACTAAAGC 58.740 52.381 0.00 0.00 0.00 3.51
73 74 2.516923 CGACGACTACAGCCACTAAAG 58.483 52.381 0.00 0.00 0.00 1.85
74 75 1.401931 GCGACGACTACAGCCACTAAA 60.402 52.381 0.00 0.00 0.00 1.85
75 76 0.169672 GCGACGACTACAGCCACTAA 59.830 55.000 0.00 0.00 0.00 2.24
76 77 0.675837 AGCGACGACTACAGCCACTA 60.676 55.000 0.00 0.00 0.00 2.74
77 78 0.675837 TAGCGACGACTACAGCCACT 60.676 55.000 0.00 0.00 0.00 4.00
78 79 0.522915 GTAGCGACGACTACAGCCAC 60.523 60.000 18.38 0.42 41.81 5.01
79 80 0.956902 TGTAGCGACGACTACAGCCA 60.957 55.000 20.66 5.94 45.79 4.75
80 81 1.798735 TGTAGCGACGACTACAGCC 59.201 57.895 20.66 4.00 45.79 4.85
84 85 2.289820 TCCATCATGTAGCGACGACTAC 59.710 50.000 17.18 17.18 42.41 2.73
85 86 2.567985 TCCATCATGTAGCGACGACTA 58.432 47.619 0.00 0.00 0.00 2.59
86 87 1.389555 TCCATCATGTAGCGACGACT 58.610 50.000 0.00 0.00 0.00 4.18
87 88 2.320367 GATCCATCATGTAGCGACGAC 58.680 52.381 0.00 0.00 0.00 4.34
88 89 1.069227 CGATCCATCATGTAGCGACGA 60.069 52.381 0.00 0.00 0.00 4.20
89 90 1.331241 CGATCCATCATGTAGCGACG 58.669 55.000 0.00 0.00 0.00 5.12
90 91 1.000163 ACCGATCCATCATGTAGCGAC 60.000 52.381 0.00 0.00 0.00 5.19
91 92 1.328279 ACCGATCCATCATGTAGCGA 58.672 50.000 0.00 0.00 0.00 4.93
92 93 2.596452 GTACCGATCCATCATGTAGCG 58.404 52.381 0.00 0.00 0.00 4.26
93 94 2.030185 ACGTACCGATCCATCATGTAGC 60.030 50.000 0.00 0.00 0.00 3.58
94 95 3.917329 ACGTACCGATCCATCATGTAG 57.083 47.619 0.00 0.00 0.00 2.74
95 96 5.970317 AATACGTACCGATCCATCATGTA 57.030 39.130 0.00 0.00 0.00 2.29
96 97 4.866508 AATACGTACCGATCCATCATGT 57.133 40.909 0.00 0.00 0.00 3.21
97 98 4.625742 GGAAATACGTACCGATCCATCATG 59.374 45.833 0.00 0.00 0.00 3.07
98 99 4.282449 TGGAAATACGTACCGATCCATCAT 59.718 41.667 13.46 0.00 0.00 2.45
99 100 3.637694 TGGAAATACGTACCGATCCATCA 59.362 43.478 13.46 0.00 0.00 3.07
100 101 4.247267 TGGAAATACGTACCGATCCATC 57.753 45.455 13.46 0.00 0.00 3.51
101 102 4.039973 ACATGGAAATACGTACCGATCCAT 59.960 41.667 19.60 19.60 37.22 3.41
102 103 3.385433 ACATGGAAATACGTACCGATCCA 59.615 43.478 17.57 17.57 0.00 3.41
103 104 3.986277 ACATGGAAATACGTACCGATCC 58.014 45.455 0.00 4.19 0.00 3.36
104 105 6.618811 AGATACATGGAAATACGTACCGATC 58.381 40.000 0.00 0.00 0.00 3.69
105 106 6.585695 AGATACATGGAAATACGTACCGAT 57.414 37.500 0.00 0.00 0.00 4.18
106 107 6.263842 AGAAGATACATGGAAATACGTACCGA 59.736 38.462 0.00 0.00 0.00 4.69
107 108 6.444633 AGAAGATACATGGAAATACGTACCG 58.555 40.000 0.00 0.00 0.00 4.02
108 109 9.924650 AATAGAAGATACATGGAAATACGTACC 57.075 33.333 0.00 0.00 0.00 3.34
152 153 7.257722 TGCTCGAGTTTTTCTTTCAGATTTTT 58.742 30.769 15.13 0.00 0.00 1.94
153 154 6.795399 TGCTCGAGTTTTTCTTTCAGATTTT 58.205 32.000 15.13 0.00 0.00 1.82
154 155 6.260936 TCTGCTCGAGTTTTTCTTTCAGATTT 59.739 34.615 15.13 0.00 0.00 2.17
155 156 5.760253 TCTGCTCGAGTTTTTCTTTCAGATT 59.240 36.000 15.13 0.00 0.00 2.40
156 157 5.300752 TCTGCTCGAGTTTTTCTTTCAGAT 58.699 37.500 15.13 0.00 0.00 2.90
157 158 4.693283 TCTGCTCGAGTTTTTCTTTCAGA 58.307 39.130 15.13 11.40 0.00 3.27
158 159 4.747108 TCTCTGCTCGAGTTTTTCTTTCAG 59.253 41.667 15.13 9.22 40.75 3.02
159 160 4.693283 TCTCTGCTCGAGTTTTTCTTTCA 58.307 39.130 15.13 0.00 40.75 2.69
160 161 4.985409 TCTCTCTGCTCGAGTTTTTCTTTC 59.015 41.667 15.13 0.00 40.75 2.62
161 162 4.950050 TCTCTCTGCTCGAGTTTTTCTTT 58.050 39.130 15.13 0.00 40.75 2.52
162 163 4.592485 TCTCTCTGCTCGAGTTTTTCTT 57.408 40.909 15.13 0.00 40.75 2.52
163 164 4.555262 CTTCTCTCTGCTCGAGTTTTTCT 58.445 43.478 15.13 0.00 40.75 2.52
164 165 3.677596 CCTTCTCTCTGCTCGAGTTTTTC 59.322 47.826 15.13 0.00 40.75 2.29
165 166 3.322254 TCCTTCTCTCTGCTCGAGTTTTT 59.678 43.478 15.13 0.00 40.75 1.94
166 167 2.894126 TCCTTCTCTCTGCTCGAGTTTT 59.106 45.455 15.13 0.00 40.75 2.43
167 168 2.520069 TCCTTCTCTCTGCTCGAGTTT 58.480 47.619 15.13 0.00 40.75 2.66
168 169 2.208132 TCCTTCTCTCTGCTCGAGTT 57.792 50.000 15.13 0.00 40.75 3.01
169 170 2.208132 TTCCTTCTCTCTGCTCGAGT 57.792 50.000 15.13 0.00 40.75 4.18
170 171 2.799207 GCATTCCTTCTCTCTGCTCGAG 60.799 54.545 8.45 8.45 41.30 4.04
171 172 1.135915 GCATTCCTTCTCTCTGCTCGA 59.864 52.381 0.00 0.00 0.00 4.04
172 173 1.134877 TGCATTCCTTCTCTCTGCTCG 60.135 52.381 0.00 0.00 34.02 5.03
173 174 2.687700 TGCATTCCTTCTCTCTGCTC 57.312 50.000 0.00 0.00 34.02 4.26
174 175 2.305343 ACTTGCATTCCTTCTCTCTGCT 59.695 45.455 0.00 0.00 34.02 4.24
175 176 2.677337 GACTTGCATTCCTTCTCTCTGC 59.323 50.000 0.00 0.00 0.00 4.26
176 177 3.683822 GTGACTTGCATTCCTTCTCTCTG 59.316 47.826 0.00 0.00 0.00 3.35
177 178 3.307339 GGTGACTTGCATTCCTTCTCTCT 60.307 47.826 0.00 0.00 0.00 3.10
178 179 3.006247 GGTGACTTGCATTCCTTCTCTC 58.994 50.000 0.00 0.00 0.00 3.20
179 180 2.373169 TGGTGACTTGCATTCCTTCTCT 59.627 45.455 0.00 0.00 0.00 3.10
180 181 2.746362 CTGGTGACTTGCATTCCTTCTC 59.254 50.000 0.00 0.00 0.00 2.87
181 182 2.373169 TCTGGTGACTTGCATTCCTTCT 59.627 45.455 0.00 0.00 0.00 2.85
182 183 2.746362 CTCTGGTGACTTGCATTCCTTC 59.254 50.000 0.00 0.00 0.00 3.46
183 184 2.107204 ACTCTGGTGACTTGCATTCCTT 59.893 45.455 0.00 0.00 0.00 3.36
184 185 1.701847 ACTCTGGTGACTTGCATTCCT 59.298 47.619 0.00 0.00 0.00 3.36
185 186 2.191128 ACTCTGGTGACTTGCATTCC 57.809 50.000 0.00 0.00 0.00 3.01
186 187 7.559590 AATAATACTCTGGTGACTTGCATTC 57.440 36.000 0.00 0.00 0.00 2.67
187 188 7.944729 AAATAATACTCTGGTGACTTGCATT 57.055 32.000 0.00 0.00 0.00 3.56
188 189 7.944729 AAAATAATACTCTGGTGACTTGCAT 57.055 32.000 0.00 0.00 0.00 3.96
189 190 7.759489 AAAAATAATACTCTGGTGACTTGCA 57.241 32.000 0.00 0.00 0.00 4.08
190 191 8.947115 AGTAAAAATAATACTCTGGTGACTTGC 58.053 33.333 0.00 0.00 0.00 4.01
192 193 8.947115 GCAGTAAAAATAATACTCTGGTGACTT 58.053 33.333 0.00 0.00 31.33 3.01
193 194 7.553044 GGCAGTAAAAATAATACTCTGGTGACT 59.447 37.037 0.00 0.00 31.33 3.41
194 195 7.201705 GGGCAGTAAAAATAATACTCTGGTGAC 60.202 40.741 0.00 0.00 31.33 3.67
195 196 6.826741 GGGCAGTAAAAATAATACTCTGGTGA 59.173 38.462 0.00 0.00 31.33 4.02
231 232 1.625818 AGCTCGAGTGATTCCTTTGGT 59.374 47.619 15.13 0.00 0.00 3.67
232 233 2.393271 AGCTCGAGTGATTCCTTTGG 57.607 50.000 15.13 0.00 0.00 3.28
233 234 3.619038 GGTTAGCTCGAGTGATTCCTTTG 59.381 47.826 15.13 0.00 0.00 2.77
237 238 3.119101 TGAAGGTTAGCTCGAGTGATTCC 60.119 47.826 15.13 10.43 0.00 3.01
273 274 4.083696 GGACGGTTCGCTTTTTCTCATAAA 60.084 41.667 0.00 0.00 0.00 1.40
274 275 3.434299 GGACGGTTCGCTTTTTCTCATAA 59.566 43.478 0.00 0.00 0.00 1.90
275 276 2.997986 GGACGGTTCGCTTTTTCTCATA 59.002 45.455 0.00 0.00 0.00 2.15
276 277 1.804748 GGACGGTTCGCTTTTTCTCAT 59.195 47.619 0.00 0.00 0.00 2.90
277 278 1.223187 GGACGGTTCGCTTTTTCTCA 58.777 50.000 0.00 0.00 0.00 3.27
278 279 0.516001 GGGACGGTTCGCTTTTTCTC 59.484 55.000 0.00 0.00 0.00 2.87
279 280 0.887836 GGGGACGGTTCGCTTTTTCT 60.888 55.000 0.00 0.00 35.04 2.52
280 281 0.887836 AGGGGACGGTTCGCTTTTTC 60.888 55.000 0.00 0.00 35.04 2.29
284 285 0.107848 CATTAGGGGACGGTTCGCTT 60.108 55.000 11.60 0.00 35.04 4.68
294 295 2.008045 GCGTACGTTTGCATTAGGGGA 61.008 52.381 17.90 0.00 0.00 4.81
295 296 0.375803 GCGTACGTTTGCATTAGGGG 59.624 55.000 17.90 0.00 0.00 4.79
296 297 0.375803 GGCGTACGTTTGCATTAGGG 59.624 55.000 17.90 0.00 0.00 3.53
297 298 0.375803 GGGCGTACGTTTGCATTAGG 59.624 55.000 17.90 0.00 0.00 2.69
303 304 4.729798 GTGCGGGCGTACGTTTGC 62.730 66.667 17.90 17.35 35.98 3.68
304 305 4.418470 CGTGCGGGCGTACGTTTG 62.418 66.667 17.90 7.72 46.22 2.93
321 322 0.528466 GGCGGTTACTACTAACCCGC 60.528 60.000 12.56 12.56 46.76 6.13
325 327 1.745653 ACTCCGGCGGTTACTACTAAC 59.254 52.381 27.32 0.00 32.71 2.34
330 332 2.446435 AGTTTACTCCGGCGGTTACTA 58.554 47.619 27.32 4.71 0.00 1.82
403 410 1.880027 CCTGGCCGTTTTATCTATGGC 59.120 52.381 0.00 0.00 45.12 4.40
404 411 1.880027 GCCTGGCCGTTTTATCTATGG 59.120 52.381 7.66 0.00 0.00 2.74
405 412 1.880027 GGCCTGGCCGTTTTATCTATG 59.120 52.381 24.16 0.00 39.62 2.23
487 494 3.541713 GTAGGGAGGCGAGGGCAG 61.542 72.222 0.00 0.00 42.47 4.85
493 500 1.877672 TTGGTAGGGTAGGGAGGCGA 61.878 60.000 0.00 0.00 0.00 5.54
495 502 0.545171 GTTTGGTAGGGTAGGGAGGC 59.455 60.000 0.00 0.00 0.00 4.70
497 504 1.210538 GGGTTTGGTAGGGTAGGGAG 58.789 60.000 0.00 0.00 0.00 4.30
498 505 0.497301 TGGGTTTGGTAGGGTAGGGA 59.503 55.000 0.00 0.00 0.00 4.20
534 564 1.690985 GAGGGGTTGGAGGGGAGAG 60.691 68.421 0.00 0.00 0.00 3.20
539 569 0.846870 AAAGGAGAGGGGTTGGAGGG 60.847 60.000 0.00 0.00 0.00 4.30
540 570 0.621082 GAAAGGAGAGGGGTTGGAGG 59.379 60.000 0.00 0.00 0.00 4.30
542 572 0.104144 TGGAAAGGAGAGGGGTTGGA 60.104 55.000 0.00 0.00 0.00 3.53
543 573 0.777446 TTGGAAAGGAGAGGGGTTGG 59.223 55.000 0.00 0.00 0.00 3.77
544 574 2.675658 TTTGGAAAGGAGAGGGGTTG 57.324 50.000 0.00 0.00 0.00 3.77
545 575 3.502303 GGAATTTGGAAAGGAGAGGGGTT 60.502 47.826 0.00 0.00 0.00 4.11
546 576 2.043115 GGAATTTGGAAAGGAGAGGGGT 59.957 50.000 0.00 0.00 0.00 4.95
591 621 4.722526 TCAAATCCTCCTTGAGTTGGAA 57.277 40.909 2.00 0.00 39.93 3.53
592 622 4.722526 TTCAAATCCTCCTTGAGTTGGA 57.277 40.909 2.00 0.00 39.93 3.53
596 626 5.012893 GTGGAATTCAAATCCTCCTTGAGT 58.987 41.667 7.93 0.00 37.85 3.41
597 627 5.125097 CAGTGGAATTCAAATCCTCCTTGAG 59.875 44.000 7.93 0.00 37.85 3.02
598 628 5.012239 CAGTGGAATTCAAATCCTCCTTGA 58.988 41.667 7.93 0.00 37.85 3.02
602 632 3.091545 TGCAGTGGAATTCAAATCCTCC 58.908 45.455 7.93 0.00 37.85 4.30
603 633 3.428589 GCTGCAGTGGAATTCAAATCCTC 60.429 47.826 16.64 0.00 37.85 3.71
625 678 0.660488 TAATAATTGCGGTGGCGCTG 59.340 50.000 7.64 1.58 44.10 5.18
626 679 1.535462 GATAATAATTGCGGTGGCGCT 59.465 47.619 7.64 0.00 44.10 5.92
627 680 1.535462 AGATAATAATTGCGGTGGCGC 59.465 47.619 0.00 0.00 44.10 6.53
628 681 3.498397 AGAAGATAATAATTGCGGTGGCG 59.502 43.478 0.00 0.00 44.10 5.69
629 682 4.083271 GGAGAAGATAATAATTGCGGTGGC 60.083 45.833 0.00 0.00 40.52 5.01
670 723 1.707993 TTCGAAACGGGGTTCCCCTT 61.708 55.000 22.77 12.46 44.66 3.95
672 725 1.968017 GTTCGAAACGGGGTTCCCC 60.968 63.158 16.52 16.52 41.57 4.81
675 728 0.318955 TCGAGTTCGAAACGGGGTTC 60.319 55.000 20.23 0.00 46.30 3.62
677 730 3.447040 TCGAGTTCGAAACGGGGT 58.553 55.556 20.23 0.00 46.30 4.95
727 834 2.280797 GCGCACCCAACAGTGAGA 60.281 61.111 0.30 0.00 39.62 3.27
729 836 2.591429 CAGCGCACCCAACAGTGA 60.591 61.111 11.47 0.00 40.34 3.41
745 852 2.257409 GAATTGAGGAGGGAGGCGCA 62.257 60.000 10.83 0.00 0.00 6.09
750 857 1.472376 GCACGAGAATTGAGGAGGGAG 60.472 57.143 0.00 0.00 0.00 4.30
751 858 0.537188 GCACGAGAATTGAGGAGGGA 59.463 55.000 0.00 0.00 0.00 4.20
794 904 0.252513 TCCATTTCGGGGTGAGAGGA 60.253 55.000 0.00 0.00 34.36 3.71
819 929 0.340208 GGAAGGAGGAGAGGAAGGGA 59.660 60.000 0.00 0.00 0.00 4.20
820 930 0.341609 AGGAAGGAGGAGAGGAAGGG 59.658 60.000 0.00 0.00 0.00 3.95
821 931 2.262266 AAGGAAGGAGGAGAGGAAGG 57.738 55.000 0.00 0.00 0.00 3.46
822 932 4.649267 AAAAAGGAAGGAGGAGAGGAAG 57.351 45.455 0.00 0.00 0.00 3.46
823 933 4.288887 GGTAAAAAGGAAGGAGGAGAGGAA 59.711 45.833 0.00 0.00 0.00 3.36
824 934 3.844804 GGTAAAAAGGAAGGAGGAGAGGA 59.155 47.826 0.00 0.00 0.00 3.71
825 935 3.054287 GGGTAAAAAGGAAGGAGGAGAGG 60.054 52.174 0.00 0.00 0.00 3.69
826 936 3.847184 AGGGTAAAAAGGAAGGAGGAGAG 59.153 47.826 0.00 0.00 0.00 3.20
827 937 3.883135 AGGGTAAAAAGGAAGGAGGAGA 58.117 45.455 0.00 0.00 0.00 3.71
828 938 4.659529 AAGGGTAAAAAGGAAGGAGGAG 57.340 45.455 0.00 0.00 0.00 3.69
829 939 4.668335 AGAAAGGGTAAAAAGGAAGGAGGA 59.332 41.667 0.00 0.00 0.00 3.71
851 961 7.328249 GTGAAGAACAGTGAGAGACAAGATAAG 59.672 40.741 0.00 0.00 0.00 1.73
859 969 2.630580 AGGGTGAAGAACAGTGAGAGAC 59.369 50.000 0.00 0.00 0.00 3.36
964 1074 3.722295 ACGCACGCCACAAATCCG 61.722 61.111 0.00 0.00 0.00 4.18
1068 1185 1.674651 CTCGTCCTCCTCGTCCACA 60.675 63.158 0.00 0.00 0.00 4.17
1080 1197 2.588620 ACATCATCCTCTACCTCGTCC 58.411 52.381 0.00 0.00 0.00 4.79
1083 1200 3.634448 ACTCAACATCATCCTCTACCTCG 59.366 47.826 0.00 0.00 0.00 4.63
1088 1217 3.003378 CGCGTACTCAACATCATCCTCTA 59.997 47.826 0.00 0.00 0.00 2.43
1167 1302 1.437986 GTCAGATTCGTCCTCGGGG 59.562 63.158 0.00 0.00 37.69 5.73
1450 1600 4.663444 CGCATCGGATTCCTCCTC 57.337 61.111 0.30 0.00 39.65 3.71
1560 1716 1.135228 TCGTCGAAATCCGCATCAGAA 60.135 47.619 0.00 0.00 38.37 3.02
1563 1719 0.527600 CCTCGTCGAAATCCGCATCA 60.528 55.000 0.00 0.00 38.37 3.07
1661 1817 1.216710 GACTCCTCTTCCTGCACCG 59.783 63.158 0.00 0.00 0.00 4.94
1764 1920 1.183549 GTTCCTGCTTCCTCGACCTA 58.816 55.000 0.00 0.00 0.00 3.08
1768 1924 1.273606 CTCTTGTTCCTGCTTCCTCGA 59.726 52.381 0.00 0.00 0.00 4.04
1771 1927 2.038295 CAGACTCTTGTTCCTGCTTCCT 59.962 50.000 0.00 0.00 0.00 3.36
1783 1939 2.413502 CGAACTCCTCGTCAGACTCTTG 60.414 54.545 0.00 0.00 42.89 3.02
1785 1941 1.444836 CGAACTCCTCGTCAGACTCT 58.555 55.000 0.00 0.00 42.89 3.24
1806 1962 0.683973 CCAATCCATCCTCCTCTCCG 59.316 60.000 0.00 0.00 0.00 4.63
1809 1965 0.327867 TGCCCAATCCATCCTCCTCT 60.328 55.000 0.00 0.00 0.00 3.69
1915 2071 2.364324 CCCCATTGAAATCTGCATCAGG 59.636 50.000 0.00 0.00 31.51 3.86
1932 2088 0.547712 CCACTTCTTCCTCCTCCCCA 60.548 60.000 0.00 0.00 0.00 4.96
2049 2208 2.685380 AGTTCCTCCTCCTGCCCG 60.685 66.667 0.00 0.00 0.00 6.13
2053 2212 1.944177 TTCTCCAGTTCCTCCTCCTG 58.056 55.000 0.00 0.00 0.00 3.86
2076 2235 2.295885 GGCATCTGGATCTCCAACTTG 58.704 52.381 0.00 0.27 46.97 3.16
2077 2236 1.918262 TGGCATCTGGATCTCCAACTT 59.082 47.619 0.00 0.00 46.97 2.66
2086 2245 0.107312 GCTGACAGTGGCATCTGGAT 60.107 55.000 17.33 2.30 39.48 3.41
2089 2248 0.607217 TTGGCTGACAGTGGCATCTG 60.607 55.000 0.00 13.26 39.67 2.90
2093 2252 0.395586 AAAGTTGGCTGACAGTGGCA 60.396 50.000 0.00 0.00 38.22 4.92
2094 2253 0.312102 GAAAGTTGGCTGACAGTGGC 59.688 55.000 3.99 0.00 0.00 5.01
2118 2277 1.308069 CCTTCACATTCCTGCCACCG 61.308 60.000 0.00 0.00 0.00 4.94
2169 2328 1.203237 TCCTCAACTTCCTCCTCAGCT 60.203 52.381 0.00 0.00 0.00 4.24
2752 2911 3.776731 TCCTCCTCCTTCACATTCCTA 57.223 47.619 0.00 0.00 0.00 2.94
2803 2962 3.190383 TCCTGATCCTCAACTTCCTCA 57.810 47.619 0.00 0.00 0.00 3.86
2910 3069 3.196039 CACCCCATTGAAATCTGCATCAA 59.804 43.478 3.10 3.10 39.66 2.57
2911 3070 2.761767 CACCCCATTGAAATCTGCATCA 59.238 45.455 0.00 0.00 0.00 3.07
2912 3071 2.101917 CCACCCCATTGAAATCTGCATC 59.898 50.000 0.00 0.00 0.00 3.91
2931 3090 2.225624 TGATCCTCAACTTCCTCCTCCA 60.226 50.000 0.00 0.00 0.00 3.86
2982 3141 1.609501 AGGTTCCTCGGCTGTAGCA 60.610 57.895 6.18 0.00 44.36 3.49
3280 3439 1.236708 TTCCCTTGGAAACCCTGGAA 58.763 50.000 0.00 0.00 38.93 3.53
3281 3440 1.146982 CTTTCCCTTGGAAACCCTGGA 59.853 52.381 4.21 0.00 45.42 3.86
3282 3441 1.146982 TCTTTCCCTTGGAAACCCTGG 59.853 52.381 4.21 0.00 45.42 4.45
3283 3442 2.239400 GTCTTTCCCTTGGAAACCCTG 58.761 52.381 4.21 0.00 45.42 4.45
3284 3443 1.856920 TGTCTTTCCCTTGGAAACCCT 59.143 47.619 4.21 0.00 45.42 4.34
3285 3444 2.375014 TGTCTTTCCCTTGGAAACCC 57.625 50.000 4.21 0.00 45.42 4.11
3286 3445 2.628178 CCTTGTCTTTCCCTTGGAAACC 59.372 50.000 4.21 0.06 45.42 3.27
3287 3446 3.562182 TCCTTGTCTTTCCCTTGGAAAC 58.438 45.455 4.21 0.00 45.42 2.78
3469 3628 1.377994 CTCTGCAGTGCCTTCCCTT 59.622 57.895 14.67 0.00 0.00 3.95
4015 4174 0.643820 CGCGCTTTTCTACCCTAACG 59.356 55.000 5.56 0.00 0.00 3.18
4335 4494 6.294176 GGCAAAGTGGATGTAATGGATATGTC 60.294 42.308 0.00 0.00 0.00 3.06
4365 4524 6.817765 TTTACATCATCAAACCCTGAGTTC 57.182 37.500 0.00 0.00 37.88 3.01
4428 4587 8.408601 ACAGATTTACATCAATATCAAGGTTGC 58.591 33.333 0.00 0.00 0.00 4.17
4470 4629 6.375945 AATCCAAAATTCAAAAGGTTGCAC 57.624 33.333 0.00 0.00 34.50 4.57
4471 4630 6.201806 CGTAATCCAAAATTCAAAAGGTTGCA 59.798 34.615 0.00 0.00 34.50 4.08
4472 4631 6.201997 ACGTAATCCAAAATTCAAAAGGTTGC 59.798 34.615 0.00 0.00 34.50 4.17
4473 4632 7.707774 ACGTAATCCAAAATTCAAAAGGTTG 57.292 32.000 0.00 0.00 35.95 3.77
4804 4966 1.337823 CCACAGTACCAGTTCCCTTCG 60.338 57.143 0.00 0.00 0.00 3.79
4810 4972 0.763035 ACCCACCACAGTACCAGTTC 59.237 55.000 0.00 0.00 0.00 3.01
5200 5362 2.031012 CCTGGTGCGCTTCTGTCA 59.969 61.111 9.73 0.00 0.00 3.58
5240 5402 1.944177 ACATCTGTAGAGGTGCAGGT 58.056 50.000 0.00 0.00 37.70 4.00
5446 5608 1.614903 CCGCTATACGTACCCAATGGA 59.385 52.381 0.00 0.00 41.42 3.41
5482 5644 6.691388 GTGCTCCCAAATCGATACATTAAAAC 59.309 38.462 0.00 0.00 0.00 2.43
5501 5663 1.530323 ATGTTAAACGTGGGTGCTCC 58.470 50.000 0.00 0.00 0.00 4.70
5502 5664 3.003897 TCAAATGTTAAACGTGGGTGCTC 59.996 43.478 0.00 0.00 0.00 4.26
5503 5665 2.952978 TCAAATGTTAAACGTGGGTGCT 59.047 40.909 0.00 0.00 0.00 4.40
5504 5666 3.243267 ACTCAAATGTTAAACGTGGGTGC 60.243 43.478 0.00 0.00 0.00 5.01
5505 5667 4.201970 ACACTCAAATGTTAAACGTGGGTG 60.202 41.667 7.43 7.43 0.00 4.61
5506 5668 3.949113 ACACTCAAATGTTAAACGTGGGT 59.051 39.130 0.00 0.00 0.00 4.51
5507 5669 4.561735 ACACTCAAATGTTAAACGTGGG 57.438 40.909 0.00 0.00 0.00 4.61
5544 5708 8.154856 TCACTGGGTAATCTAATATGTTAAGGC 58.845 37.037 0.00 0.00 0.00 4.35
5568 5732 3.951680 TCAGAGCATACCGTACTCAATCA 59.048 43.478 0.00 0.00 32.71 2.57
5577 5741 7.671302 AGTCATATAATTTCAGAGCATACCGT 58.329 34.615 0.00 0.00 0.00 4.83
5578 5742 7.814587 TGAGTCATATAATTTCAGAGCATACCG 59.185 37.037 0.00 0.00 0.00 4.02
5579 5743 9.149225 CTGAGTCATATAATTTCAGAGCATACC 57.851 37.037 0.00 0.00 37.96 2.73
5580 5744 8.655092 GCTGAGTCATATAATTTCAGAGCATAC 58.345 37.037 5.44 0.00 37.96 2.39
5581 5745 7.821359 GGCTGAGTCATATAATTTCAGAGCATA 59.179 37.037 5.44 0.00 37.96 3.14
5582 5746 6.654161 GGCTGAGTCATATAATTTCAGAGCAT 59.346 38.462 5.44 0.00 37.96 3.79
5583 5747 5.994054 GGCTGAGTCATATAATTTCAGAGCA 59.006 40.000 5.44 0.00 37.96 4.26
5584 5748 6.229733 AGGCTGAGTCATATAATTTCAGAGC 58.770 40.000 5.44 0.00 37.96 4.09
5585 5749 7.714377 ACAAGGCTGAGTCATATAATTTCAGAG 59.286 37.037 5.44 0.00 37.96 3.35
5586 5750 7.568349 ACAAGGCTGAGTCATATAATTTCAGA 58.432 34.615 5.44 0.00 37.96 3.27
5587 5751 7.798596 ACAAGGCTGAGTCATATAATTTCAG 57.201 36.000 0.00 0.00 38.57 3.02
5588 5752 9.851686 AATACAAGGCTGAGTCATATAATTTCA 57.148 29.630 0.00 0.00 0.00 2.69
5592 5756 9.851686 TGAAAATACAAGGCTGAGTCATATAAT 57.148 29.630 0.00 0.00 0.00 1.28
5593 5757 9.851686 ATGAAAATACAAGGCTGAGTCATATAA 57.148 29.630 0.00 0.00 0.00 0.98
5596 5760 9.851686 AATATGAAAATACAAGGCTGAGTCATA 57.148 29.630 0.00 0.00 31.92 2.15
5597 5761 8.757982 AATATGAAAATACAAGGCTGAGTCAT 57.242 30.769 0.00 0.00 0.00 3.06
5598 5762 8.579850 AAATATGAAAATACAAGGCTGAGTCA 57.420 30.769 0.00 0.00 0.00 3.41
5644 5809 9.679661 TGATGTCCTAGCATAAACTGAAATAAA 57.320 29.630 0.00 0.00 0.00 1.40
5648 5813 6.767902 GGATGATGTCCTAGCATAAACTGAAA 59.232 38.462 0.00 0.00 44.16 2.69
5665 5830 2.174210 AGCTGCTACAATGGGATGATGT 59.826 45.455 0.00 0.00 0.00 3.06
5685 5850 7.416326 GGCTACTTAATTATTTTGGGACCACAG 60.416 40.741 0.00 0.00 0.00 3.66
5704 5869 8.267894 ACACATTTTCAGTATAGATGGCTACTT 58.732 33.333 0.00 0.00 0.00 2.24
5706 5871 7.928706 AGACACATTTTCAGTATAGATGGCTAC 59.071 37.037 0.00 0.00 0.00 3.58
5707 5872 8.023021 AGACACATTTTCAGTATAGATGGCTA 57.977 34.615 0.00 0.00 0.00 3.93
5708 5873 6.893583 AGACACATTTTCAGTATAGATGGCT 58.106 36.000 0.00 0.00 0.00 4.75
5709 5874 6.989169 AGAGACACATTTTCAGTATAGATGGC 59.011 38.462 0.00 0.00 0.00 4.40
5710 5875 7.440556 CCAGAGACACATTTTCAGTATAGATGG 59.559 40.741 0.00 0.00 0.00 3.51
5722 5890 3.181476 GCCACAAACCAGAGACACATTTT 60.181 43.478 0.00 0.00 0.00 1.82
5781 5949 2.092484 TGGCCAACAGCATAGCAGAATA 60.092 45.455 0.61 0.00 46.50 1.75
5782 5950 1.341285 TGGCCAACAGCATAGCAGAAT 60.341 47.619 0.61 0.00 46.50 2.40
5809 5987 5.300286 AGCTGTCTTTTGCATTTAGTTCAGT 59.700 36.000 0.00 0.00 0.00 3.41
5823 6001 5.872070 GCAGAGTCTAATACAGCTGTCTTTT 59.128 40.000 25.56 17.44 36.01 2.27
5847 6025 9.736023 GTTAATCCCAGTTAAATAGCAAGATTG 57.264 33.333 0.00 0.00 0.00 2.67
5849 6027 8.282256 AGGTTAATCCCAGTTAAATAGCAAGAT 58.718 33.333 0.00 0.00 36.75 2.40
5850 6028 7.639378 AGGTTAATCCCAGTTAAATAGCAAGA 58.361 34.615 0.00 0.00 36.75 3.02
5852 6030 7.639378 AGAGGTTAATCCCAGTTAAATAGCAA 58.361 34.615 0.00 0.00 36.75 3.91
5853 6031 7.092623 TGAGAGGTTAATCCCAGTTAAATAGCA 60.093 37.037 0.00 0.00 36.75 3.49
5926 6119 2.478031 CGCTAAGATAGTGTGTGTCGCT 60.478 50.000 0.00 0.00 40.30 4.93
5956 6149 3.129287 CCCTATCCTTGTTGTGTGCAATC 59.871 47.826 0.00 0.00 36.92 2.67
6484 6679 9.118236 GTTCAGTTTTCCTTCATATTTTTCTCG 57.882 33.333 0.00 0.00 0.00 4.04
6619 6818 7.334421 TGCAGAGATTTTCTTAACAGTACATCC 59.666 37.037 0.00 0.00 32.41 3.51
6680 6879 8.336987 AGCTATTCCTACCAAGAAAGGTTATTT 58.663 33.333 0.00 0.00 43.08 1.40
6766 6965 1.475930 GGCTTCAGTTATGAGAGGGGC 60.476 57.143 0.00 0.00 36.61 5.80
6787 6986 4.594123 TCTGATAAATCGAATACCGCCA 57.406 40.909 0.00 0.00 38.37 5.69
6806 7005 0.105778 GGGCAGCTAGCTCGAAATCT 59.894 55.000 16.15 0.00 44.79 2.40
6872 7071 7.243091 ACCCTAGAAGAAGAATATAGGACCTC 58.757 42.308 0.00 0.00 35.97 3.85
6960 7241 1.086634 GCTCGGGAGTTAAGCAGCTG 61.087 60.000 10.11 10.11 36.06 4.24
6966 7247 1.134699 TGCATGAGCTCGGGAGTTAAG 60.135 52.381 9.64 0.00 42.74 1.85
6993 7274 9.726438 CAAAAAGAGAGAGAAGATAAACCCTTA 57.274 33.333 0.00 0.00 0.00 2.69
7001 7282 4.466370 TCCCGCAAAAAGAGAGAGAAGATA 59.534 41.667 0.00 0.00 0.00 1.98
7007 7288 4.773323 AAAATCCCGCAAAAAGAGAGAG 57.227 40.909 0.00 0.00 0.00 3.20
7019 7300 9.797556 AGTTAAAATGAACTAATAAAATCCCGC 57.202 29.630 0.00 0.00 37.90 6.13
7055 7338 7.452880 CAAAGAGGTTGTTGGAATCTAATCA 57.547 36.000 0.00 0.00 32.08 2.57
7101 7385 7.231467 ACATAATGTAAGACTTGACAGGGTTT 58.769 34.615 0.00 0.00 0.00 3.27
7102 7386 6.779860 ACATAATGTAAGACTTGACAGGGTT 58.220 36.000 0.00 0.00 0.00 4.11
7103 7387 6.374417 ACATAATGTAAGACTTGACAGGGT 57.626 37.500 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.