Multiple sequence alignment - TraesCS2D01G092500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G092500 chr2D 100.000 5114 0 0 1 5114 43996130 43991017 0.000000e+00 9444.0
1 TraesCS2D01G092500 chr2A 91.869 3001 169 32 1 2953 47834642 47831669 0.000000e+00 4120.0
2 TraesCS2D01G092500 chr2A 85.181 1876 156 61 2970 4815 47831684 47829901 0.000000e+00 1812.0
3 TraesCS2D01G092500 chr2B 88.748 3466 225 92 207 3602 69044942 69041572 0.000000e+00 4087.0
4 TraesCS2D01G092500 chr2B 92.893 788 38 11 3785 4567 69041352 69040578 0.000000e+00 1129.0
5 TraesCS2D01G092500 chr2B 92.308 91 7 0 4887 4977 69040187 69040097 4.160000e-26 130.0
6 TraesCS2D01G092500 chr2B 85.965 114 6 5 1872 1984 69055594 69055490 4.180000e-21 113.0
7 TraesCS2D01G092500 chr2B 94.340 53 3 0 4594 4646 69040573 69040521 1.180000e-11 82.4
8 TraesCS2D01G092500 chr4A 77.708 794 131 34 1035 1810 143446371 143445606 1.310000e-120 444.0
9 TraesCS2D01G092500 chr7D 80.000 130 22 4 159 287 136292163 136292037 5.450000e-15 93.5
10 TraesCS2D01G092500 chr3D 89.394 66 7 0 222 287 481118598 481118533 3.280000e-12 84.2
11 TraesCS2D01G092500 chr3D 84.706 85 8 4 204 284 96414139 96414222 4.240000e-11 80.5
12 TraesCS2D01G092500 chr3D 85.333 75 10 1 215 289 471260483 471260556 5.490000e-10 76.8
13 TraesCS2D01G092500 chr6D 87.879 66 8 0 222 287 455630456 455630391 1.530000e-10 78.7
14 TraesCS2D01G092500 chr3A 85.075 67 10 0 221 287 114449590 114449656 9.190000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G092500 chr2D 43991017 43996130 5113 True 9444.0 9444 100.00000 1 5114 1 chr2D.!!$R1 5113
1 TraesCS2D01G092500 chr2A 47829901 47834642 4741 True 2966.0 4120 88.52500 1 4815 2 chr2A.!!$R1 4814
2 TraesCS2D01G092500 chr2B 69040097 69044942 4845 True 1357.1 4087 92.07225 207 4977 4 chr2B.!!$R2 4770
3 TraesCS2D01G092500 chr4A 143445606 143446371 765 True 444.0 444 77.70800 1035 1810 1 chr4A.!!$R1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 144 0.317770 CACACAACCAACATCCGCAC 60.318 55.0 0.00 0.0 0.00 5.34 F
1238 1284 0.260523 GTACTGCTCTCCCCCTCTCT 59.739 60.0 0.00 0.0 0.00 3.10 F
1842 1895 0.307760 CACCGAACAAACTGTGCCTC 59.692 55.0 0.00 0.0 0.00 4.70 F
2849 2911 0.252479 AGCCTGCCTCTCATGACTTG 59.748 55.0 0.00 0.0 0.00 3.16 F
3016 3080 0.940126 GTGACCTGCACTTGTCTGTG 59.060 55.0 7.54 0.0 44.27 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2038 0.253044 ACTCCCCAACATCCATGTCG 59.747 55.000 0.00 0.00 40.80 4.35 R
2829 2885 0.540923 AAGTCATGAGAGGCAGGCTC 59.459 55.000 16.35 16.35 0.00 4.70 R
3771 4039 0.528017 TCAGAAGTAGGCAGCTGACG 59.472 55.000 20.43 0.00 32.85 4.35 R
4071 4340 1.144936 CGGTCTCTTGCCCTCCATC 59.855 63.158 0.00 0.00 0.00 3.51 R
4991 5386 0.100503 GCACCGACATGTTTATGGCC 59.899 55.000 0.00 0.00 39.27 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.672819 GCGTAAATGTCGAATAAAACTGGCT 60.673 40.000 0.00 0.00 0.00 4.75
66 67 7.806014 GTCGAATAAAACTGGCTGTTTGATTTA 59.194 33.333 24.84 16.97 45.20 1.40
70 71 9.830975 AATAAAACTGGCTGTTTGATTTAGTTT 57.169 25.926 20.79 6.60 43.64 2.66
82 83 7.093289 TGTTTGATTTAGTTTTGGTCCCTTTCA 60.093 33.333 0.00 0.00 0.00 2.69
113 115 1.280710 CACACACCCAGCCCTTACATA 59.719 52.381 0.00 0.00 0.00 2.29
115 117 1.134098 CACACCCAGCCCTTACATAGG 60.134 57.143 0.00 0.00 44.33 2.57
116 118 1.213296 CACCCAGCCCTTACATAGGT 58.787 55.000 0.00 0.00 43.07 3.08
138 140 1.888512 AGATGCACACAACCAACATCC 59.111 47.619 0.00 0.00 38.28 3.51
139 141 0.597568 ATGCACACAACCAACATCCG 59.402 50.000 0.00 0.00 0.00 4.18
142 144 0.317770 CACACAACCAACATCCGCAC 60.318 55.000 0.00 0.00 0.00 5.34
143 145 0.749818 ACACAACCAACATCCGCACA 60.750 50.000 0.00 0.00 0.00 4.57
150 158 1.202348 CCAACATCCGCACAAAACACA 60.202 47.619 0.00 0.00 0.00 3.72
199 209 9.630098 AAGATCAAAAGTTATGCATAAACAGTG 57.370 29.630 20.46 15.44 0.00 3.66
332 342 2.632763 AAAGGAGTGACTAGCCCTCT 57.367 50.000 0.00 0.00 0.00 3.69
348 358 3.146066 CCCTCTGTCGGTTGAAAAATGA 58.854 45.455 0.00 0.00 0.00 2.57
353 364 4.878971 TCTGTCGGTTGAAAAATGAAGTCA 59.121 37.500 0.00 0.00 0.00 3.41
508 521 2.165167 ACGAATCACCGGTAGACTGAA 58.835 47.619 6.87 0.00 0.00 3.02
518 531 5.354234 CACCGGTAGACTGAAAATTAGCAAT 59.646 40.000 6.87 0.00 0.00 3.56
519 532 5.944007 ACCGGTAGACTGAAAATTAGCAATT 59.056 36.000 4.49 0.00 0.00 2.32
611 633 3.125316 CGAAACAGCCTAGGTTTAGCAAG 59.875 47.826 11.31 0.00 38.50 4.01
726 770 2.619590 GCCCTTTCCGAAAATCCCACTA 60.620 50.000 0.00 0.00 0.00 2.74
1167 1213 1.819903 GACTACTTCCTCGTCAAGCCT 59.180 52.381 0.00 0.00 0.00 4.58
1238 1284 0.260523 GTACTGCTCTCCCCCTCTCT 59.739 60.000 0.00 0.00 0.00 3.10
1582 1632 3.311871 GCTGAATATCTCTGGCTGTGTTG 59.688 47.826 0.00 0.00 0.00 3.33
1734 1787 1.298014 CCACAGGCTGGAGGAGAAC 59.702 63.158 20.34 0.00 43.95 3.01
1823 1876 6.127980 GGTCAGGAGGTAGCAATTTTCTTTAC 60.128 42.308 0.00 0.00 0.00 2.01
1838 1891 4.868450 TCTTTACACCGAACAAACTGTG 57.132 40.909 0.00 0.00 34.92 3.66
1842 1895 0.307760 CACCGAACAAACTGTGCCTC 59.692 55.000 0.00 0.00 0.00 4.70
1985 2038 1.316651 GCCTCTCAAGATCCATTGGC 58.683 55.000 0.00 0.00 0.00 4.52
2079 2132 9.762933 ACAAAATGCATGTAATTTGTAGTTTCT 57.237 25.926 23.27 2.71 42.42 2.52
2083 2136 9.630098 AATGCATGTAATTTGTAGTTTCTTCTG 57.370 29.630 0.00 0.00 0.00 3.02
2084 2137 8.165239 TGCATGTAATTTGTAGTTTCTTCTGT 57.835 30.769 0.00 0.00 0.00 3.41
2085 2138 8.629158 TGCATGTAATTTGTAGTTTCTTCTGTT 58.371 29.630 0.00 0.00 0.00 3.16
2086 2139 9.118236 GCATGTAATTTGTAGTTTCTTCTGTTC 57.882 33.333 0.00 0.00 0.00 3.18
2089 2142 8.836413 TGTAATTTGTAGTTTCTTCTGTTCTGG 58.164 33.333 0.00 0.00 0.00 3.86
2133 2186 6.685527 GAAAGTTGTCTCTTTCTCTTTGGT 57.314 37.500 10.63 0.00 45.47 3.67
2134 2187 7.787725 GAAAGTTGTCTCTTTCTCTTTGGTA 57.212 36.000 10.63 0.00 45.47 3.25
2215 2268 0.533531 CGCTATCCAATGAGGCAGCA 60.534 55.000 0.00 0.00 42.23 4.41
2517 2572 6.040616 AGTCTCTTCTTTTTCGTAGAAGGTCA 59.959 38.462 11.46 0.00 45.52 4.02
2550 2605 1.613925 GGAAAGTTTGGAGGCAAGTCC 59.386 52.381 0.00 0.00 37.10 3.85
2651 2706 3.366883 GCAATGATCCCGCAAACTTGTTA 60.367 43.478 0.00 0.00 0.00 2.41
2654 2709 3.482436 TGATCCCGCAAACTTGTTAAGT 58.518 40.909 0.00 0.00 45.46 2.24
2686 2741 9.515020 TGTTTTCTTATAGTTCTTTGTGCTTTG 57.485 29.630 0.00 0.00 0.00 2.77
2687 2742 9.730420 GTTTTCTTATAGTTCTTTGTGCTTTGA 57.270 29.630 0.00 0.00 0.00 2.69
2742 2797 8.498192 AATTTCGATTGAAAATCTATCATGCG 57.502 30.769 12.14 0.00 46.53 4.73
2744 2799 6.603237 TCGATTGAAAATCTATCATGCGTT 57.397 33.333 0.00 0.00 29.87 4.84
2745 2800 6.649436 TCGATTGAAAATCTATCATGCGTTC 58.351 36.000 0.00 0.00 29.87 3.95
2764 2819 5.180117 GCGTTCTGCCTATTTGATCACATAT 59.820 40.000 2.10 0.00 37.76 1.78
2773 2828 7.591165 CCTATTTGATCACATATCTTTGCTGG 58.409 38.462 2.10 0.00 0.00 4.85
2798 2853 5.241949 AGCATGGTAAGACGTAGATTAGGAG 59.758 44.000 0.00 0.00 0.00 3.69
2800 2855 3.887716 TGGTAAGACGTAGATTAGGAGGC 59.112 47.826 0.00 0.00 0.00 4.70
2801 2856 3.887716 GGTAAGACGTAGATTAGGAGGCA 59.112 47.826 0.00 0.00 0.00 4.75
2804 2859 5.615925 AAGACGTAGATTAGGAGGCATTT 57.384 39.130 0.00 0.00 0.00 2.32
2809 2864 5.944007 ACGTAGATTAGGAGGCATTTTTGTT 59.056 36.000 0.00 0.00 0.00 2.83
2812 2867 8.455682 CGTAGATTAGGAGGCATTTTTGTTAAA 58.544 33.333 0.00 0.00 0.00 1.52
2829 2885 8.592105 TTTGTTAAATTCTTGAGCATTTGGAG 57.408 30.769 0.00 0.00 0.00 3.86
2835 2891 1.743958 CTTGAGCATTTGGAGAGCCTG 59.256 52.381 0.00 0.00 34.31 4.85
2836 2892 0.679002 TGAGCATTTGGAGAGCCTGC 60.679 55.000 0.00 0.00 34.12 4.85
2837 2893 1.379576 AGCATTTGGAGAGCCTGCC 60.380 57.895 0.00 0.00 34.37 4.85
2839 2895 1.382692 GCATTTGGAGAGCCTGCCTC 61.383 60.000 0.00 0.00 41.07 4.70
2849 2911 0.252479 AGCCTGCCTCTCATGACTTG 59.748 55.000 0.00 0.00 0.00 3.16
2894 2957 2.807392 CCATTTTGGTGCCAACATGTTC 59.193 45.455 21.53 0.00 40.49 3.18
2896 2959 4.262377 CCATTTTGGTGCCAACATGTTCTA 60.262 41.667 21.53 0.00 40.49 2.10
2925 2989 9.931698 TTCTTATCAAGTACCTACTCCTATTCA 57.068 33.333 0.00 0.00 34.99 2.57
2932 2996 8.356657 CAAGTACCTACTCCTATTCATCTTCAG 58.643 40.741 0.00 0.00 34.99 3.02
2934 2998 6.969993 ACCTACTCCTATTCATCTTCAGTC 57.030 41.667 0.00 0.00 0.00 3.51
2936 3000 6.775629 ACCTACTCCTATTCATCTTCAGTCTC 59.224 42.308 0.00 0.00 0.00 3.36
2937 3001 7.004086 CCTACTCCTATTCATCTTCAGTCTCT 58.996 42.308 0.00 0.00 0.00 3.10
2938 3002 6.713762 ACTCCTATTCATCTTCAGTCTCTG 57.286 41.667 0.00 0.00 0.00 3.35
2939 3003 6.194235 ACTCCTATTCATCTTCAGTCTCTGT 58.806 40.000 0.00 0.00 32.61 3.41
2940 3004 6.096705 ACTCCTATTCATCTTCAGTCTCTGTG 59.903 42.308 0.00 0.00 32.61 3.66
2941 3005 5.954752 TCCTATTCATCTTCAGTCTCTGTGT 59.045 40.000 0.00 0.00 32.61 3.72
2942 3006 6.041511 CCTATTCATCTTCAGTCTCTGTGTG 58.958 44.000 0.00 0.00 32.61 3.82
2943 3007 5.735285 ATTCATCTTCAGTCTCTGTGTGA 57.265 39.130 0.00 0.00 32.61 3.58
2944 3008 4.511617 TCATCTTCAGTCTCTGTGTGAC 57.488 45.455 0.00 0.00 32.61 3.67
2945 3009 3.891366 TCATCTTCAGTCTCTGTGTGACA 59.109 43.478 0.00 0.00 36.94 3.58
2946 3010 4.342092 TCATCTTCAGTCTCTGTGTGACAA 59.658 41.667 0.00 0.00 36.94 3.18
2947 3011 4.313277 TCTTCAGTCTCTGTGTGACAAG 57.687 45.455 0.00 0.00 36.94 3.16
2948 3012 3.954258 TCTTCAGTCTCTGTGTGACAAGA 59.046 43.478 0.00 0.00 36.94 3.02
2949 3013 4.402474 TCTTCAGTCTCTGTGTGACAAGAA 59.598 41.667 0.00 0.00 36.94 2.52
2950 3014 4.944619 TCAGTCTCTGTGTGACAAGAAT 57.055 40.909 0.00 0.00 36.94 2.40
2951 3015 4.876125 TCAGTCTCTGTGTGACAAGAATC 58.124 43.478 0.00 0.00 36.94 2.52
2952 3016 3.993081 CAGTCTCTGTGTGACAAGAATCC 59.007 47.826 0.00 0.00 36.94 3.01
2953 3017 3.643320 AGTCTCTGTGTGACAAGAATCCA 59.357 43.478 0.00 0.00 36.94 3.41
2954 3018 4.285517 AGTCTCTGTGTGACAAGAATCCAT 59.714 41.667 0.00 0.00 36.94 3.41
2955 3019 5.481824 AGTCTCTGTGTGACAAGAATCCATA 59.518 40.000 0.00 0.00 36.94 2.74
2956 3020 5.578727 GTCTCTGTGTGACAAGAATCCATAC 59.421 44.000 0.00 0.00 34.80 2.39
2957 3021 5.245977 TCTCTGTGTGACAAGAATCCATACA 59.754 40.000 0.00 0.00 32.46 2.29
2958 3022 6.053632 TCTGTGTGACAAGAATCCATACAT 57.946 37.500 0.00 0.00 32.87 2.29
2959 3023 5.876460 TCTGTGTGACAAGAATCCATACATG 59.124 40.000 0.00 0.00 32.87 3.21
2960 3024 5.559770 TGTGTGACAAGAATCCATACATGT 58.440 37.500 2.69 2.69 29.22 3.21
2961 3025 6.003326 TGTGTGACAAGAATCCATACATGTT 58.997 36.000 2.30 0.00 29.22 2.71
2962 3026 6.149308 TGTGTGACAAGAATCCATACATGTTC 59.851 38.462 2.30 0.00 29.22 3.18
2963 3027 6.149308 GTGTGACAAGAATCCATACATGTTCA 59.851 38.462 2.30 0.00 0.00 3.18
2964 3028 6.372381 TGTGACAAGAATCCATACATGTTCAG 59.628 38.462 2.30 0.00 0.00 3.02
2965 3029 6.372659 GTGACAAGAATCCATACATGTTCAGT 59.627 38.462 2.30 0.00 0.00 3.41
2966 3030 6.595326 TGACAAGAATCCATACATGTTCAGTC 59.405 38.462 2.30 7.51 32.94 3.51
2967 3031 6.715280 ACAAGAATCCATACATGTTCAGTCT 58.285 36.000 2.30 0.00 0.00 3.24
2968 3032 6.820656 ACAAGAATCCATACATGTTCAGTCTC 59.179 38.462 2.30 0.00 0.00 3.36
2992 3056 2.771943 TGTGACAAGAACCCTCTGAACT 59.228 45.455 0.00 0.00 30.03 3.01
2998 3062 1.771255 AGAACCCTCTGAACTGCTTGT 59.229 47.619 0.00 0.00 0.00 3.16
2999 3063 1.876156 GAACCCTCTGAACTGCTTGTG 59.124 52.381 0.00 0.00 0.00 3.33
3015 3079 3.386543 GTGACCTGCACTTGTCTGT 57.613 52.632 7.54 0.00 44.27 3.41
3016 3080 0.940126 GTGACCTGCACTTGTCTGTG 59.060 55.000 7.54 0.00 44.27 3.66
3053 3117 6.327154 CACATATGCTTCATTCAGCTTTCAA 58.673 36.000 1.58 0.00 40.79 2.69
3062 3126 6.882610 TCATTCAGCTTTCAACTGTGTATT 57.117 33.333 0.00 0.00 36.50 1.89
3077 3141 4.019919 GTGTATTACACTTGCTGGCATG 57.980 45.455 17.77 6.87 45.27 4.06
3078 3142 3.689161 GTGTATTACACTTGCTGGCATGA 59.311 43.478 17.77 0.00 45.27 3.07
3088 3152 4.753107 ACTTGCTGGCATGAAAGAATTTTG 59.247 37.500 13.95 0.00 39.27 2.44
3117 3181 9.613428 TGGTTCAGAATGTTATATTAACTCTGG 57.387 33.333 12.76 1.62 37.40 3.86
3118 3182 9.832445 GGTTCAGAATGTTATATTAACTCTGGA 57.168 33.333 12.76 5.67 37.40 3.86
3126 3190 8.783660 TGTTATATTAACTCTGGAGTCTGGAT 57.216 34.615 3.60 0.03 41.58 3.41
3127 3191 9.877222 TGTTATATTAACTCTGGAGTCTGGATA 57.123 33.333 3.60 2.06 41.58 2.59
3152 3221 6.945218 AGACTAATCAATGCAGAGAAACTCT 58.055 36.000 0.00 0.00 42.11 3.24
3153 3222 8.072321 AGACTAATCAATGCAGAGAAACTCTA 57.928 34.615 0.87 0.00 38.99 2.43
3154 3223 8.535335 AGACTAATCAATGCAGAGAAACTCTAA 58.465 33.333 0.87 0.00 38.99 2.10
3204 3286 8.065473 TGTAATTGGTGAATCATGCTTATTGT 57.935 30.769 0.00 0.00 0.00 2.71
3212 3294 5.587443 TGAATCATGCTTATTGTGACTCCTG 59.413 40.000 0.00 0.00 0.00 3.86
3221 3303 6.595716 GCTTATTGTGACTCCTGTTCTGTTAT 59.404 38.462 0.00 0.00 0.00 1.89
3290 3372 5.063204 TGACAACAGGACGATTCTTTTGAT 58.937 37.500 0.00 0.00 0.00 2.57
3292 3374 6.878923 TGACAACAGGACGATTCTTTTGATAT 59.121 34.615 0.00 0.00 0.00 1.63
3295 3377 7.065085 ACAACAGGACGATTCTTTTGATATGAG 59.935 37.037 0.00 0.00 0.00 2.90
3321 3403 6.567687 TTTGTTGAGACTTTCTGTTGACAA 57.432 33.333 0.00 0.00 0.00 3.18
3323 3405 5.000591 TGTTGAGACTTTCTGTTGACAACA 58.999 37.500 19.55 19.55 40.23 3.33
3324 3406 5.471797 TGTTGAGACTTTCTGTTGACAACAA 59.528 36.000 20.91 10.09 41.61 2.83
3336 3418 4.582701 TTGACAACAACATCACCATTCC 57.417 40.909 0.00 0.00 0.00 3.01
3337 3419 3.560105 TGACAACAACATCACCATTCCA 58.440 40.909 0.00 0.00 0.00 3.53
3338 3420 3.569277 TGACAACAACATCACCATTCCAG 59.431 43.478 0.00 0.00 0.00 3.86
3339 3421 3.820467 GACAACAACATCACCATTCCAGA 59.180 43.478 0.00 0.00 0.00 3.86
3341 3423 4.834496 ACAACAACATCACCATTCCAGATT 59.166 37.500 0.00 0.00 0.00 2.40
3343 3425 6.183360 ACAACAACATCACCATTCCAGATTTT 60.183 34.615 0.00 0.00 0.00 1.82
3348 3434 6.725364 ACATCACCATTCCAGATTTTAGAGT 58.275 36.000 0.00 0.00 0.00 3.24
3350 3436 7.337942 ACATCACCATTCCAGATTTTAGAGTTC 59.662 37.037 0.00 0.00 0.00 3.01
3353 3439 8.602424 TCACCATTCCAGATTTTAGAGTTCTTA 58.398 33.333 0.00 0.00 0.00 2.10
3440 3536 9.635520 GTGCTAAAACTTAGTCATAGTTCTGTA 57.364 33.333 6.36 0.00 34.88 2.74
3441 3537 9.856488 TGCTAAAACTTAGTCATAGTTCTGTAG 57.144 33.333 6.36 0.00 34.88 2.74
3446 3542 7.411486 ACTTAGTCATAGTTCTGTAGCACAT 57.589 36.000 0.00 0.00 0.00 3.21
3447 3543 7.484975 ACTTAGTCATAGTTCTGTAGCACATC 58.515 38.462 0.00 0.00 0.00 3.06
3450 3546 6.940739 AGTCATAGTTCTGTAGCACATCTTT 58.059 36.000 0.00 0.00 0.00 2.52
3451 3547 8.067751 AGTCATAGTTCTGTAGCACATCTTTA 57.932 34.615 0.00 0.00 0.00 1.85
3454 3550 9.534565 TCATAGTTCTGTAGCACATCTTTATTC 57.465 33.333 0.00 0.00 0.00 1.75
3455 3551 9.317936 CATAGTTCTGTAGCACATCTTTATTCA 57.682 33.333 0.00 0.00 0.00 2.57
3529 3633 4.340666 TCTGTCTTCTCTCATGGTATGCTC 59.659 45.833 0.00 0.00 0.00 4.26
3533 3637 4.100653 TCTTCTCTCATGGTATGCTCTTGG 59.899 45.833 0.00 0.00 0.00 3.61
3534 3638 3.646534 TCTCTCATGGTATGCTCTTGGA 58.353 45.455 0.00 0.00 0.00 3.53
3535 3639 4.229639 TCTCTCATGGTATGCTCTTGGAT 58.770 43.478 0.00 0.00 0.00 3.41
3536 3640 4.282957 TCTCTCATGGTATGCTCTTGGATC 59.717 45.833 0.00 0.00 0.00 3.36
3537 3641 3.969312 TCTCATGGTATGCTCTTGGATCA 59.031 43.478 0.00 0.00 0.00 2.92
3540 3644 5.128205 TCATGGTATGCTCTTGGATCAAAG 58.872 41.667 3.13 3.13 0.00 2.77
3541 3645 3.889815 TGGTATGCTCTTGGATCAAAGG 58.110 45.455 10.05 2.38 0.00 3.11
3542 3646 3.523157 TGGTATGCTCTTGGATCAAAGGA 59.477 43.478 10.05 0.00 0.00 3.36
3544 3648 5.136105 GGTATGCTCTTGGATCAAAGGATT 58.864 41.667 10.05 0.00 32.67 3.01
3546 3650 4.581309 TGCTCTTGGATCAAAGGATTCT 57.419 40.909 10.05 0.00 32.67 2.40
3547 3651 5.698741 TGCTCTTGGATCAAAGGATTCTA 57.301 39.130 10.05 0.00 32.67 2.10
3548 3652 6.257994 TGCTCTTGGATCAAAGGATTCTAT 57.742 37.500 10.05 0.00 32.67 1.98
3550 3654 7.805163 TGCTCTTGGATCAAAGGATTCTATAA 58.195 34.615 10.05 0.00 32.67 0.98
3551 3655 8.443176 TGCTCTTGGATCAAAGGATTCTATAAT 58.557 33.333 10.05 0.00 32.67 1.28
3552 3656 9.950496 GCTCTTGGATCAAAGGATTCTATAATA 57.050 33.333 10.05 0.00 32.67 0.98
3583 3687 9.847224 ATATTTTCTTATCGGTCTTTACATGGT 57.153 29.630 0.00 0.00 0.00 3.55
3616 3720 3.845860 TGAGAGTTTGTCTGGAGGTAGT 58.154 45.455 0.00 0.00 34.71 2.73
3617 3721 4.223953 TGAGAGTTTGTCTGGAGGTAGTT 58.776 43.478 0.00 0.00 34.71 2.24
3664 3768 7.826252 ACTTCTTTCTGTAGATTGCACATGTAT 59.174 33.333 0.00 0.00 0.00 2.29
3666 3770 8.565896 TCTTTCTGTAGATTGCACATGTATTT 57.434 30.769 0.00 0.00 0.00 1.40
3751 4019 6.156932 GCTTTGAAGCGCTTTTGAAATATT 57.843 33.333 25.84 0.00 42.88 1.28
4065 4334 3.495001 GTCTGGAGTGTCGGAAAAAGAAG 59.505 47.826 0.00 0.00 0.00 2.85
4071 4340 0.163146 GTCGGAAAAAGAAGGACGCG 59.837 55.000 3.53 3.53 0.00 6.01
4234 4503 5.273208 TGAACCTAACTAGATTCTCAGCCT 58.727 41.667 0.00 0.00 0.00 4.58
4265 4534 3.343617 TGTATTTGGCTGCTAACCAGTC 58.656 45.455 0.00 0.00 46.47 3.51
4336 4606 3.580731 GAGGAAACTACTGTGCAGACTC 58.419 50.000 6.17 0.00 44.43 3.36
4339 4609 5.020132 AGGAAACTACTGTGCAGACTCTAT 58.980 41.667 6.17 0.00 40.61 1.98
4438 4710 6.267471 TCTTGGAATGTAATTTTGCTGGAAGT 59.733 34.615 0.00 0.00 36.07 3.01
4462 4734 2.430332 AGTATGAGCTGAGCCAACTCTC 59.570 50.000 0.00 0.00 43.85 3.20
4468 4740 2.903135 AGCTGAGCCAACTCTCTAAACT 59.097 45.455 0.00 0.00 43.85 2.66
4504 4776 4.398358 TGTTTCCACGTTTGTTTCCATGTA 59.602 37.500 0.00 0.00 0.00 2.29
4510 4782 3.125658 ACGTTTGTTTCCATGTATACGCC 59.874 43.478 0.00 0.00 0.00 5.68
4525 4799 1.388547 ACGCCTTCTTCTGCACAAAA 58.611 45.000 0.00 0.00 0.00 2.44
4531 4805 4.992951 GCCTTCTTCTGCACAAAAATGATT 59.007 37.500 0.00 0.00 0.00 2.57
4571 4845 8.918202 ATAAATGTGTACTTCCTCTGTCAAAA 57.082 30.769 0.00 0.00 0.00 2.44
4640 4914 4.957759 CGTTGTATCCGGATTCCTTTTT 57.042 40.909 24.71 0.00 0.00 1.94
4709 5066 8.738645 ACTTTAGAAGAAGTTGGCTATATTGG 57.261 34.615 0.00 0.00 36.49 3.16
4732 5089 4.144297 ACAGAGCTTTTGTTGGCTAATCA 58.856 39.130 0.00 0.00 39.05 2.57
4771 5128 1.599047 CACTCGGGCCTGTTGATCT 59.401 57.895 12.43 0.00 0.00 2.75
4820 5178 2.798680 GTCGCATCAAGACGATACAGT 58.201 47.619 0.00 0.00 40.90 3.55
4821 5179 2.784380 GTCGCATCAAGACGATACAGTC 59.216 50.000 0.00 0.00 40.90 3.51
4822 5180 2.422127 TCGCATCAAGACGATACAGTCA 59.578 45.455 0.00 0.00 43.24 3.41
4823 5181 2.531912 CGCATCAAGACGATACAGTCAC 59.468 50.000 0.00 0.00 43.24 3.67
4826 5184 4.032217 GCATCAAGACGATACAGTCACAAG 59.968 45.833 0.00 0.00 43.24 3.16
4837 5195 9.136952 ACGATACAGTCACAAGTTATTTACTTC 57.863 33.333 0.00 0.00 45.29 3.01
4839 5197 9.431887 GATACAGTCACAAGTTATTTACTTCCA 57.568 33.333 0.00 0.00 45.29 3.53
4846 5204 7.444183 TCACAAGTTATTTACTTCCAACCTCTG 59.556 37.037 0.00 0.00 45.29 3.35
4847 5205 6.206829 ACAAGTTATTTACTTCCAACCTCTGC 59.793 38.462 0.00 0.00 45.29 4.26
4848 5206 5.876357 AGTTATTTACTTCCAACCTCTGCA 58.124 37.500 0.00 0.00 31.29 4.41
4849 5207 6.485171 AGTTATTTACTTCCAACCTCTGCAT 58.515 36.000 0.00 0.00 31.29 3.96
4850 5208 6.948309 AGTTATTTACTTCCAACCTCTGCATT 59.052 34.615 0.00 0.00 31.29 3.56
4871 5237 7.521529 GCATTATTAAGATGCACGTATCACAT 58.478 34.615 17.20 0.00 46.96 3.21
4878 5244 3.603158 TGCACGTATCACATACAAGGT 57.397 42.857 0.00 0.00 35.48 3.50
4879 5245 4.722361 TGCACGTATCACATACAAGGTA 57.278 40.909 0.00 0.00 35.48 3.08
4880 5246 4.678622 TGCACGTATCACATACAAGGTAG 58.321 43.478 0.00 0.00 35.48 3.18
4881 5247 3.489785 GCACGTATCACATACAAGGTAGC 59.510 47.826 0.00 0.00 35.48 3.58
4882 5248 3.729217 CACGTATCACATACAAGGTAGCG 59.271 47.826 0.00 0.00 35.48 4.26
4884 5250 4.277672 ACGTATCACATACAAGGTAGCGAT 59.722 41.667 0.00 0.00 35.48 4.58
4885 5251 4.617223 CGTATCACATACAAGGTAGCGATG 59.383 45.833 0.00 0.08 35.48 3.84
4896 5291 7.073342 ACAAGGTAGCGATGAAAAGAATAAC 57.927 36.000 7.60 0.00 0.00 1.89
4900 5295 2.354821 AGCGATGAAAAGAATAACGCCC 59.645 45.455 0.00 0.00 44.42 6.13
4912 5307 3.753294 ATAACGCCCTCTAAGGTGATG 57.247 47.619 0.00 0.00 39.99 3.07
4923 5318 1.201429 AAGGTGATGGAGGGCGAGTT 61.201 55.000 0.00 0.00 0.00 3.01
4924 5319 1.450312 GGTGATGGAGGGCGAGTTG 60.450 63.158 0.00 0.00 0.00 3.16
4979 5374 9.533253 AAAAATTTCTTGACTACCTGTTTCATG 57.467 29.630 0.00 0.00 0.00 3.07
4980 5375 7.823745 AATTTCTTGACTACCTGTTTCATGT 57.176 32.000 0.00 0.00 0.00 3.21
4981 5376 6.618287 TTTCTTGACTACCTGTTTCATGTG 57.382 37.500 0.00 0.00 0.00 3.21
4982 5377 4.065088 TCTTGACTACCTGTTTCATGTGC 58.935 43.478 0.00 0.00 0.00 4.57
4983 5378 3.483808 TGACTACCTGTTTCATGTGCA 57.516 42.857 0.00 0.00 0.00 4.57
4984 5379 4.019792 TGACTACCTGTTTCATGTGCAT 57.980 40.909 0.00 0.00 0.00 3.96
4985 5380 5.159273 TGACTACCTGTTTCATGTGCATA 57.841 39.130 0.00 0.00 0.00 3.14
4986 5381 4.935205 TGACTACCTGTTTCATGTGCATAC 59.065 41.667 0.00 0.00 0.00 2.39
4987 5382 4.905429 ACTACCTGTTTCATGTGCATACA 58.095 39.130 0.00 0.00 41.89 2.29
5000 5395 2.050477 GCATACATGCGGCCATAAAC 57.950 50.000 2.24 0.00 44.67 2.01
5001 5396 1.336440 GCATACATGCGGCCATAAACA 59.664 47.619 2.24 0.00 44.67 2.83
5002 5397 2.030007 GCATACATGCGGCCATAAACAT 60.030 45.455 2.24 0.00 44.67 2.71
5003 5398 3.567530 CATACATGCGGCCATAAACATG 58.432 45.455 2.24 10.57 44.29 3.21
5004 5399 1.473258 ACATGCGGCCATAAACATGT 58.527 45.000 15.58 15.58 46.16 3.21
5005 5400 2.124011 CATGCGGCCATAAACATGTC 57.876 50.000 2.24 0.00 36.11 3.06
5006 5401 0.662619 ATGCGGCCATAAACATGTCG 59.337 50.000 2.24 0.00 0.00 4.35
5007 5402 1.355210 GCGGCCATAAACATGTCGG 59.645 57.895 2.24 0.00 0.00 4.79
5008 5403 1.373590 GCGGCCATAAACATGTCGGT 61.374 55.000 2.24 0.00 0.00 4.69
5009 5404 0.376852 CGGCCATAAACATGTCGGTG 59.623 55.000 2.24 0.00 0.00 4.94
5010 5405 0.100503 GGCCATAAACATGTCGGTGC 59.899 55.000 0.00 0.00 0.00 5.01
5011 5406 0.248054 GCCATAAACATGTCGGTGCG 60.248 55.000 0.00 0.00 0.00 5.34
5012 5407 0.248054 CCATAAACATGTCGGTGCGC 60.248 55.000 0.00 0.00 0.00 6.09
5013 5408 0.726827 CATAAACATGTCGGTGCGCT 59.273 50.000 9.73 0.00 0.00 5.92
5014 5409 0.726827 ATAAACATGTCGGTGCGCTG 59.273 50.000 9.73 0.00 0.00 5.18
5015 5410 0.319986 TAAACATGTCGGTGCGCTGA 60.320 50.000 9.73 4.21 0.00 4.26
5016 5411 1.163420 AAACATGTCGGTGCGCTGAA 61.163 50.000 11.09 1.91 0.00 3.02
5017 5412 1.568612 AACATGTCGGTGCGCTGAAG 61.569 55.000 11.09 6.63 0.00 3.02
5018 5413 2.434884 ATGTCGGTGCGCTGAAGG 60.435 61.111 11.09 0.00 0.00 3.46
5019 5414 2.942796 ATGTCGGTGCGCTGAAGGA 61.943 57.895 11.09 0.00 0.00 3.36
5020 5415 2.357034 GTCGGTGCGCTGAAGGAA 60.357 61.111 11.09 0.00 0.00 3.36
5021 5416 1.959226 GTCGGTGCGCTGAAGGAAA 60.959 57.895 11.09 0.00 0.00 3.13
5022 5417 1.227704 TCGGTGCGCTGAAGGAAAA 60.228 52.632 9.73 0.00 0.00 2.29
5023 5418 0.816018 TCGGTGCGCTGAAGGAAAAA 60.816 50.000 9.73 0.00 0.00 1.94
5024 5419 0.240945 CGGTGCGCTGAAGGAAAAAT 59.759 50.000 9.73 0.00 0.00 1.82
5025 5420 1.701704 GGTGCGCTGAAGGAAAAATG 58.298 50.000 9.73 0.00 0.00 2.32
5026 5421 1.269448 GGTGCGCTGAAGGAAAAATGA 59.731 47.619 9.73 0.00 0.00 2.57
5027 5422 2.589014 GTGCGCTGAAGGAAAAATGAG 58.411 47.619 9.73 0.00 0.00 2.90
5028 5423 1.068333 TGCGCTGAAGGAAAAATGAGC 60.068 47.619 9.73 0.00 0.00 4.26
5029 5424 1.068333 GCGCTGAAGGAAAAATGAGCA 60.068 47.619 0.00 0.00 0.00 4.26
5030 5425 2.607771 GCGCTGAAGGAAAAATGAGCAA 60.608 45.455 0.00 0.00 0.00 3.91
5031 5426 3.240069 CGCTGAAGGAAAAATGAGCAAG 58.760 45.455 0.00 0.00 0.00 4.01
5032 5427 3.058016 CGCTGAAGGAAAAATGAGCAAGA 60.058 43.478 0.00 0.00 0.00 3.02
5033 5428 4.557296 CGCTGAAGGAAAAATGAGCAAGAA 60.557 41.667 0.00 0.00 0.00 2.52
5034 5429 4.683320 GCTGAAGGAAAAATGAGCAAGAAC 59.317 41.667 0.00 0.00 0.00 3.01
5035 5430 5.737063 GCTGAAGGAAAAATGAGCAAGAACA 60.737 40.000 0.00 0.00 0.00 3.18
5036 5431 5.835257 TGAAGGAAAAATGAGCAAGAACAG 58.165 37.500 0.00 0.00 0.00 3.16
5037 5432 5.593909 TGAAGGAAAAATGAGCAAGAACAGA 59.406 36.000 0.00 0.00 0.00 3.41
5038 5433 5.702349 AGGAAAAATGAGCAAGAACAGAG 57.298 39.130 0.00 0.00 0.00 3.35
5039 5434 4.022503 AGGAAAAATGAGCAAGAACAGAGC 60.023 41.667 0.00 0.00 0.00 4.09
5040 5435 3.930634 AAAATGAGCAAGAACAGAGCC 57.069 42.857 0.00 0.00 0.00 4.70
5041 5436 2.574006 AATGAGCAAGAACAGAGCCA 57.426 45.000 0.00 0.00 0.00 4.75
5042 5437 2.110901 ATGAGCAAGAACAGAGCCAG 57.889 50.000 0.00 0.00 0.00 4.85
5043 5438 0.761187 TGAGCAAGAACAGAGCCAGT 59.239 50.000 0.00 0.00 0.00 4.00
5044 5439 1.141657 TGAGCAAGAACAGAGCCAGTT 59.858 47.619 0.00 0.00 0.00 3.16
5045 5440 1.803555 GAGCAAGAACAGAGCCAGTTC 59.196 52.381 5.63 5.63 44.32 3.01
5054 5449 2.898705 CAGAGCCAGTTCTGTATCCAC 58.101 52.381 3.56 0.00 39.76 4.02
5055 5450 2.234661 CAGAGCCAGTTCTGTATCCACA 59.765 50.000 3.56 0.00 39.76 4.17
5056 5451 3.110705 AGAGCCAGTTCTGTATCCACAT 58.889 45.455 0.00 0.00 33.14 3.21
5057 5452 4.100035 CAGAGCCAGTTCTGTATCCACATA 59.900 45.833 3.56 0.00 39.76 2.29
5058 5453 4.904251 AGAGCCAGTTCTGTATCCACATAT 59.096 41.667 0.00 0.00 33.14 1.78
5059 5454 5.367937 AGAGCCAGTTCTGTATCCACATATT 59.632 40.000 0.00 0.00 33.14 1.28
5060 5455 6.554982 AGAGCCAGTTCTGTATCCACATATTA 59.445 38.462 0.00 0.00 33.14 0.98
5061 5456 7.236432 AGAGCCAGTTCTGTATCCACATATTAT 59.764 37.037 0.00 0.00 33.14 1.28
5062 5457 7.749666 AGCCAGTTCTGTATCCACATATTATT 58.250 34.615 0.00 0.00 33.14 1.40
5063 5458 8.880244 AGCCAGTTCTGTATCCACATATTATTA 58.120 33.333 0.00 0.00 33.14 0.98
5064 5459 9.672673 GCCAGTTCTGTATCCACATATTATTAT 57.327 33.333 0.00 0.00 33.14 1.28
5107 5502 6.913873 TCATTTCTACATAGGTAAAACGGC 57.086 37.500 0.00 0.00 0.00 5.68
5108 5503 5.818857 TCATTTCTACATAGGTAAAACGGCC 59.181 40.000 0.00 0.00 0.00 6.13
5109 5504 4.822685 TTCTACATAGGTAAAACGGCCA 57.177 40.909 2.24 0.00 0.00 5.36
5110 5505 4.822685 TCTACATAGGTAAAACGGCCAA 57.177 40.909 2.24 0.00 0.00 4.52
5111 5506 4.506758 TCTACATAGGTAAAACGGCCAAC 58.493 43.478 2.24 0.00 0.00 3.77
5112 5507 3.143211 ACATAGGTAAAACGGCCAACA 57.857 42.857 2.24 0.00 0.00 3.33
5113 5508 3.488363 ACATAGGTAAAACGGCCAACAA 58.512 40.909 2.24 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.635124 CAGTTTTATTCGACATTTACGCAAAAT 58.365 29.630 0.00 0.00 38.36 1.82
28 29 7.113684 CCAGTTTTATTCGACATTTACGCAAAA 59.886 33.333 0.00 0.00 0.00 2.44
51 52 5.600696 ACCAAAACTAAATCAAACAGCCAG 58.399 37.500 0.00 0.00 0.00 4.85
56 57 6.800072 AAGGGACCAAAACTAAATCAAACA 57.200 33.333 0.00 0.00 0.00 2.83
66 67 3.398318 AAGGTGAAAGGGACCAAAACT 57.602 42.857 0.00 0.00 35.76 2.66
70 71 1.213430 ACGAAAGGTGAAAGGGACCAA 59.787 47.619 0.00 0.00 35.76 3.67
82 83 1.822186 GGTGTGTGCCACGAAAGGT 60.822 57.895 0.00 0.00 45.52 3.50
113 115 2.884639 GTTGGTTGTGTGCATCTTACCT 59.115 45.455 10.91 0.00 0.00 3.08
115 117 3.980646 TGTTGGTTGTGTGCATCTTAC 57.019 42.857 0.00 0.00 0.00 2.34
116 118 3.505680 GGATGTTGGTTGTGTGCATCTTA 59.494 43.478 0.00 0.00 36.94 2.10
121 123 2.028936 CGGATGTTGGTTGTGTGCA 58.971 52.632 0.00 0.00 0.00 4.57
123 125 0.317770 GTGCGGATGTTGGTTGTGTG 60.318 55.000 0.00 0.00 0.00 3.82
124 126 0.749818 TGTGCGGATGTTGGTTGTGT 60.750 50.000 0.00 0.00 0.00 3.72
138 140 0.991770 GCTAGCGTGTGTTTTGTGCG 60.992 55.000 0.00 0.00 0.00 5.34
139 141 0.028770 TGCTAGCGTGTGTTTTGTGC 59.971 50.000 10.77 0.00 0.00 4.57
142 144 2.774007 GCTATGCTAGCGTGTGTTTTG 58.226 47.619 19.93 2.45 42.62 2.44
177 187 9.809096 TTTTCACTGTTTATGCATAACTTTTGA 57.191 25.926 18.70 15.03 0.00 2.69
197 207 9.727403 CTTCGTTTTTCTTTCTTTCTTTTTCAC 57.273 29.630 0.00 0.00 0.00 3.18
199 209 7.627193 CGCTTCGTTTTTCTTTCTTTCTTTTTC 59.373 33.333 0.00 0.00 0.00 2.29
332 342 4.638421 ACTGACTTCATTTTTCAACCGACA 59.362 37.500 0.00 0.00 0.00 4.35
423 436 4.095782 TGAGTTGTGAAAACAAGCACTACC 59.904 41.667 0.00 0.00 40.13 3.18
611 633 4.696899 AAGGTAAAGCAGTATTTTCGGC 57.303 40.909 0.00 0.00 0.00 5.54
707 751 3.939592 GACTAGTGGGATTTTCGGAAAGG 59.060 47.826 0.00 0.00 0.00 3.11
866 911 3.489513 GGGGGTTCGGATCTGGGG 61.490 72.222 0.62 0.00 0.00 4.96
1257 1303 3.101428 CCAACGACGAACCGGACG 61.101 66.667 9.46 16.45 37.01 4.79
1563 1611 4.764172 AGTCAACACAGCCAGAGATATTC 58.236 43.478 0.00 0.00 0.00 1.75
1582 1632 2.352032 CCGACACCTCCCCTGAGTC 61.352 68.421 0.00 0.00 36.86 3.36
1659 1712 1.889105 CAGGATGCACCGGGAATCG 60.889 63.158 6.32 0.00 44.74 3.34
1734 1787 3.578272 CGCTCCCTCTCCTCGACG 61.578 72.222 0.00 0.00 0.00 5.12
1823 1876 0.307760 GAGGCACAGTTTGTTCGGTG 59.692 55.000 0.00 0.00 36.79 4.94
1838 1891 1.251251 AGTTCCATGCTTTGTGAGGC 58.749 50.000 0.00 0.00 0.00 4.70
1842 1895 6.680810 TCAATCTAAAGTTCCATGCTTTGTG 58.319 36.000 6.96 1.87 36.88 3.33
1985 2038 0.253044 ACTCCCCAACATCCATGTCG 59.747 55.000 0.00 0.00 40.80 4.35
2073 2126 4.102367 AGAAGCTCCAGAACAGAAGAAACT 59.898 41.667 0.00 0.00 0.00 2.66
2074 2127 4.384940 AGAAGCTCCAGAACAGAAGAAAC 58.615 43.478 0.00 0.00 0.00 2.78
2075 2128 4.696479 AGAAGCTCCAGAACAGAAGAAA 57.304 40.909 0.00 0.00 0.00 2.52
2076 2129 4.696479 AAGAAGCTCCAGAACAGAAGAA 57.304 40.909 0.00 0.00 0.00 2.52
2077 2130 4.696479 AAAGAAGCTCCAGAACAGAAGA 57.304 40.909 0.00 0.00 0.00 2.87
2078 2131 4.578105 ACAAAAGAAGCTCCAGAACAGAAG 59.422 41.667 0.00 0.00 0.00 2.85
2079 2132 4.336433 CACAAAAGAAGCTCCAGAACAGAA 59.664 41.667 0.00 0.00 0.00 3.02
2080 2133 3.879295 CACAAAAGAAGCTCCAGAACAGA 59.121 43.478 0.00 0.00 0.00 3.41
2081 2134 3.004106 CCACAAAAGAAGCTCCAGAACAG 59.996 47.826 0.00 0.00 0.00 3.16
2082 2135 2.951642 CCACAAAAGAAGCTCCAGAACA 59.048 45.455 0.00 0.00 0.00 3.18
2083 2136 3.214328 TCCACAAAAGAAGCTCCAGAAC 58.786 45.455 0.00 0.00 0.00 3.01
2084 2137 3.117888 ACTCCACAAAAGAAGCTCCAGAA 60.118 43.478 0.00 0.00 0.00 3.02
2085 2138 2.439507 ACTCCACAAAAGAAGCTCCAGA 59.560 45.455 0.00 0.00 0.00 3.86
2086 2139 2.856222 ACTCCACAAAAGAAGCTCCAG 58.144 47.619 0.00 0.00 0.00 3.86
2087 2140 3.117888 AGAACTCCACAAAAGAAGCTCCA 60.118 43.478 0.00 0.00 0.00 3.86
2088 2141 3.251972 CAGAACTCCACAAAAGAAGCTCC 59.748 47.826 0.00 0.00 0.00 4.70
2089 2142 4.130118 TCAGAACTCCACAAAAGAAGCTC 58.870 43.478 0.00 0.00 0.00 4.09
2133 2186 5.009110 CCGACACTTGAGAGCTGAGATTATA 59.991 44.000 0.00 0.00 0.00 0.98
2134 2187 4.202101 CCGACACTTGAGAGCTGAGATTAT 60.202 45.833 0.00 0.00 0.00 1.28
2317 2370 5.443185 CAATTGAGTGAATTGTGTCCAGT 57.557 39.130 6.87 0.00 44.17 4.00
2326 2381 6.349243 TCAGAATTGGCAATTGAGTGAATT 57.651 33.333 28.78 3.27 34.34 2.17
2517 2572 4.082245 CCAAACTTTCCAACTGAACTGTGT 60.082 41.667 0.00 0.00 31.05 3.72
2550 2605 0.810031 CCACGGAACCAATAGAGGCG 60.810 60.000 0.00 0.00 0.00 5.52
2583 2638 1.074405 TCCAACATTGCAGAGCCTTCT 59.926 47.619 0.00 0.00 0.00 2.85
2698 2753 8.630037 TCGAAATTCACAGATGTAGAATAGCTA 58.370 33.333 0.00 0.00 32.11 3.32
2699 2754 7.492524 TCGAAATTCACAGATGTAGAATAGCT 58.507 34.615 0.00 0.00 32.11 3.32
2706 2761 9.778993 ATTTTCAATCGAAATTCACAGATGTAG 57.221 29.630 0.00 0.00 40.75 2.74
2722 2777 6.572621 CAGAACGCATGATAGATTTTCAATCG 59.427 38.462 0.00 0.00 0.00 3.34
2730 2785 3.482156 AGGCAGAACGCATGATAGATT 57.518 42.857 0.00 0.00 45.17 2.40
2742 2797 7.976135 AGATATGTGATCAAATAGGCAGAAC 57.024 36.000 11.26 0.00 0.00 3.01
2744 2799 7.040892 GCAAAGATATGTGATCAAATAGGCAGA 60.041 37.037 11.26 0.00 0.00 4.26
2745 2800 7.040617 AGCAAAGATATGTGATCAAATAGGCAG 60.041 37.037 11.26 2.32 0.00 4.85
2773 2828 5.241064 TCCTAATCTACGTCTTACCATGCTC 59.759 44.000 0.00 0.00 0.00 4.26
2780 2835 5.708877 ATGCCTCCTAATCTACGTCTTAC 57.291 43.478 0.00 0.00 0.00 2.34
2798 2853 7.188468 TGCTCAAGAATTTAACAAAAATGCC 57.812 32.000 0.00 0.00 0.00 4.40
2804 2859 8.420222 TCTCCAAATGCTCAAGAATTTAACAAA 58.580 29.630 0.00 0.00 31.67 2.83
2809 2864 5.126061 GGCTCTCCAAATGCTCAAGAATTTA 59.874 40.000 0.00 0.00 31.67 1.40
2812 2867 3.022406 GGCTCTCCAAATGCTCAAGAAT 58.978 45.455 0.00 0.00 0.00 2.40
2829 2885 0.540923 AAGTCATGAGAGGCAGGCTC 59.459 55.000 16.35 16.35 0.00 4.70
2835 2891 3.929610 GAGTTACACAAGTCATGAGAGGC 59.070 47.826 0.00 0.00 34.69 4.70
2836 2892 5.398603 AGAGTTACACAAGTCATGAGAGG 57.601 43.478 0.00 0.00 36.68 3.69
2837 2893 7.721286 AAAAGAGTTACACAAGTCATGAGAG 57.279 36.000 0.00 0.00 36.68 3.20
2875 2937 5.743636 ATAGAACATGTTGGCACCAAAAT 57.256 34.783 17.58 0.81 37.70 1.82
2876 2938 5.543507 AATAGAACATGTTGGCACCAAAA 57.456 34.783 17.58 0.00 37.70 2.44
2920 2984 6.209391 TGTCACACAGAGACTGAAGATGAATA 59.791 38.462 5.76 0.00 36.94 1.75
2925 2989 4.586421 TCTTGTCACACAGAGACTGAAGAT 59.414 41.667 5.76 0.00 36.94 2.40
2927 2991 4.313277 TCTTGTCACACAGAGACTGAAG 57.687 45.455 5.76 1.02 36.94 3.02
2929 2993 4.262207 GGATTCTTGTCACACAGAGACTGA 60.262 45.833 5.76 0.00 36.94 3.41
2932 2996 3.995199 TGGATTCTTGTCACACAGAGAC 58.005 45.455 0.00 0.00 36.55 3.36
2934 2998 5.482006 TGTATGGATTCTTGTCACACAGAG 58.518 41.667 0.00 0.00 0.00 3.35
2936 3000 5.645067 ACATGTATGGATTCTTGTCACACAG 59.355 40.000 0.00 0.00 0.00 3.66
2937 3001 5.559770 ACATGTATGGATTCTTGTCACACA 58.440 37.500 0.00 0.00 0.00 3.72
2938 3002 6.149308 TGAACATGTATGGATTCTTGTCACAC 59.851 38.462 0.00 0.00 0.00 3.82
2939 3003 6.237154 TGAACATGTATGGATTCTTGTCACA 58.763 36.000 0.00 0.00 0.00 3.58
2940 3004 6.372659 ACTGAACATGTATGGATTCTTGTCAC 59.627 38.462 0.00 0.00 0.00 3.67
2941 3005 6.475504 ACTGAACATGTATGGATTCTTGTCA 58.524 36.000 0.00 0.00 0.00 3.58
2942 3006 6.820656 AGACTGAACATGTATGGATTCTTGTC 59.179 38.462 0.00 5.39 0.00 3.18
2943 3007 6.715280 AGACTGAACATGTATGGATTCTTGT 58.285 36.000 0.00 0.00 0.00 3.16
2944 3008 7.011202 CAGAGACTGAACATGTATGGATTCTTG 59.989 40.741 0.00 0.00 32.44 3.02
2945 3009 7.046652 CAGAGACTGAACATGTATGGATTCTT 58.953 38.462 0.00 0.00 32.44 2.52
2946 3010 6.155910 ACAGAGACTGAACATGTATGGATTCT 59.844 38.462 0.00 0.00 35.18 2.40
2947 3011 6.257411 CACAGAGACTGAACATGTATGGATTC 59.743 42.308 0.00 0.00 35.18 2.52
2948 3012 6.111382 CACAGAGACTGAACATGTATGGATT 58.889 40.000 0.00 0.00 35.18 3.01
2949 3013 5.188555 ACACAGAGACTGAACATGTATGGAT 59.811 40.000 0.00 0.00 35.18 3.41
2950 3014 4.528206 ACACAGAGACTGAACATGTATGGA 59.472 41.667 0.00 0.00 35.18 3.41
2951 3015 4.628766 CACACAGAGACTGAACATGTATGG 59.371 45.833 0.00 0.00 35.18 2.74
2952 3016 5.347093 GTCACACAGAGACTGAACATGTATG 59.653 44.000 0.00 0.00 35.18 2.39
2953 3017 5.011023 TGTCACACAGAGACTGAACATGTAT 59.989 40.000 0.00 0.00 36.94 2.29
2954 3018 4.340950 TGTCACACAGAGACTGAACATGTA 59.659 41.667 0.00 0.00 36.94 2.29
2955 3019 3.132824 TGTCACACAGAGACTGAACATGT 59.867 43.478 5.76 0.00 36.94 3.21
2956 3020 3.721035 TGTCACACAGAGACTGAACATG 58.279 45.455 5.76 0.00 36.94 3.21
2957 3021 4.100035 TCTTGTCACACAGAGACTGAACAT 59.900 41.667 5.76 0.00 36.94 2.71
2958 3022 3.447229 TCTTGTCACACAGAGACTGAACA 59.553 43.478 5.76 2.45 36.94 3.18
2959 3023 4.046938 TCTTGTCACACAGAGACTGAAC 57.953 45.455 5.76 0.20 36.94 3.18
2960 3024 4.433615 GTTCTTGTCACACAGAGACTGAA 58.566 43.478 5.76 0.00 36.94 3.02
2961 3025 3.181475 GGTTCTTGTCACACAGAGACTGA 60.181 47.826 5.76 0.00 36.94 3.41
2962 3026 3.126831 GGTTCTTGTCACACAGAGACTG 58.873 50.000 0.00 0.00 36.94 3.51
2963 3027 2.103263 GGGTTCTTGTCACACAGAGACT 59.897 50.000 0.00 0.00 36.94 3.24
2964 3028 2.103263 AGGGTTCTTGTCACACAGAGAC 59.897 50.000 0.00 0.00 36.55 3.36
2965 3029 2.365617 GAGGGTTCTTGTCACACAGAGA 59.634 50.000 0.00 0.00 0.00 3.10
2966 3030 2.366916 AGAGGGTTCTTGTCACACAGAG 59.633 50.000 0.00 0.00 0.00 3.35
2967 3031 2.103094 CAGAGGGTTCTTGTCACACAGA 59.897 50.000 0.00 0.00 0.00 3.41
2968 3032 2.103094 TCAGAGGGTTCTTGTCACACAG 59.897 50.000 0.00 0.00 0.00 3.66
2998 3062 3.384816 CACAGACAAGTGCAGGTCA 57.615 52.632 13.65 0.00 36.50 4.02
3029 3093 5.886992 TGAAAGCTGAATGAAGCATATGTG 58.113 37.500 4.29 0.00 46.08 3.21
3030 3094 6.152323 AGTTGAAAGCTGAATGAAGCATATGT 59.848 34.615 4.29 0.00 46.08 2.29
3062 3126 3.138884 TCTTTCATGCCAGCAAGTGTA 57.861 42.857 0.00 0.00 0.00 2.90
3076 3140 8.881743 CATTCTGAACCAAACAAAATTCTTTCA 58.118 29.630 0.00 0.00 0.00 2.69
3077 3141 8.882736 ACATTCTGAACCAAACAAAATTCTTTC 58.117 29.630 0.00 0.00 0.00 2.62
3078 3142 8.791327 ACATTCTGAACCAAACAAAATTCTTT 57.209 26.923 0.00 0.00 0.00 2.52
3120 3184 7.288621 TCTCTGCATTGATTAGTCTTATCCAGA 59.711 37.037 0.00 2.16 0.00 3.86
3121 3185 7.440198 TCTCTGCATTGATTAGTCTTATCCAG 58.560 38.462 0.00 0.00 0.00 3.86
3122 3186 7.365497 TCTCTGCATTGATTAGTCTTATCCA 57.635 36.000 0.00 0.00 0.00 3.41
3126 3190 8.535335 AGAGTTTCTCTGCATTGATTAGTCTTA 58.465 33.333 0.00 0.00 39.62 2.10
3127 3191 7.393216 AGAGTTTCTCTGCATTGATTAGTCTT 58.607 34.615 0.00 0.00 39.62 3.01
3138 3202 7.934855 ATGTCAAATTAGAGTTTCTCTGCAT 57.065 32.000 9.22 0.00 41.37 3.96
3152 3221 6.720309 TGGATGACTGAGGAATGTCAAATTA 58.280 36.000 0.00 0.00 44.81 1.40
3153 3222 5.573219 TGGATGACTGAGGAATGTCAAATT 58.427 37.500 0.00 0.00 44.81 1.82
3154 3223 5.183530 TGGATGACTGAGGAATGTCAAAT 57.816 39.130 0.00 0.00 44.81 2.32
3244 3326 8.903820 GTCAGTAGCTACCCATTGAAATTTAAT 58.096 33.333 20.31 0.00 0.00 1.40
3245 3327 7.885922 TGTCAGTAGCTACCCATTGAAATTTAA 59.114 33.333 20.31 0.00 0.00 1.52
3246 3328 7.398829 TGTCAGTAGCTACCCATTGAAATTTA 58.601 34.615 20.31 0.99 0.00 1.40
3247 3329 6.245408 TGTCAGTAGCTACCCATTGAAATTT 58.755 36.000 20.31 0.00 0.00 1.82
3250 3332 4.901197 TGTCAGTAGCTACCCATTGAAA 57.099 40.909 20.31 9.68 0.00 2.69
3254 3336 3.055094 CCTGTTGTCAGTAGCTACCCATT 60.055 47.826 20.31 0.00 39.82 3.16
3259 3341 2.486982 TCGTCCTGTTGTCAGTAGCTAC 59.513 50.000 16.43 16.43 39.82 3.58
3269 3351 6.878923 TCATATCAAAAGAATCGTCCTGTTGT 59.121 34.615 0.00 0.00 32.20 3.32
3290 3372 9.778741 AACAGAAAGTCTCAACAAATACTCATA 57.221 29.630 0.00 0.00 0.00 2.15
3292 3374 7.768582 TCAACAGAAAGTCTCAACAAATACTCA 59.231 33.333 0.00 0.00 0.00 3.41
3295 3377 7.693952 TGTCAACAGAAAGTCTCAACAAATAC 58.306 34.615 0.00 0.00 0.00 1.89
3321 3403 6.947733 TCTAAAATCTGGAATGGTGATGTTGT 59.052 34.615 0.00 0.00 0.00 3.32
3323 3405 7.177878 ACTCTAAAATCTGGAATGGTGATGTT 58.822 34.615 0.00 0.00 0.00 2.71
3324 3406 6.725364 ACTCTAAAATCTGGAATGGTGATGT 58.275 36.000 0.00 0.00 0.00 3.06
3325 3407 7.555554 AGAACTCTAAAATCTGGAATGGTGATG 59.444 37.037 0.00 0.00 0.00 3.07
3326 3408 7.637511 AGAACTCTAAAATCTGGAATGGTGAT 58.362 34.615 0.00 0.00 0.00 3.06
3327 3409 7.020827 AGAACTCTAAAATCTGGAATGGTGA 57.979 36.000 0.00 0.00 0.00 4.02
3328 3410 7.693969 AAGAACTCTAAAATCTGGAATGGTG 57.306 36.000 0.00 0.00 0.00 4.17
3329 3411 8.606830 ACTAAGAACTCTAAAATCTGGAATGGT 58.393 33.333 0.00 0.00 0.00 3.55
3330 3412 9.454859 AACTAAGAACTCTAAAATCTGGAATGG 57.545 33.333 0.00 0.00 0.00 3.16
3409 3500 8.311650 ACTATGACTAAGTTTTAGCACACTTG 57.688 34.615 0.00 0.00 34.92 3.16
3412 3503 8.436200 CAGAACTATGACTAAGTTTTAGCACAC 58.564 37.037 0.00 0.00 37.31 3.82
3413 3504 8.148351 ACAGAACTATGACTAAGTTTTAGCACA 58.852 33.333 0.00 0.00 37.31 4.57
3414 3505 8.535690 ACAGAACTATGACTAAGTTTTAGCAC 57.464 34.615 0.00 0.00 37.31 4.40
3415 3506 9.856488 CTACAGAACTATGACTAAGTTTTAGCA 57.144 33.333 0.00 0.00 37.31 3.49
3419 3515 8.148351 TGTGCTACAGAACTATGACTAAGTTTT 58.852 33.333 0.00 0.00 37.31 2.43
3426 3522 6.537453 AAGATGTGCTACAGAACTATGACT 57.463 37.500 0.00 0.00 0.00 3.41
3428 3524 9.534565 GAATAAAGATGTGCTACAGAACTATGA 57.465 33.333 0.00 0.00 0.00 2.15
3473 3571 9.543231 CCCAGAGTAAGGGTATACATTATTCTA 57.457 37.037 17.32 0.00 41.61 2.10
3474 3572 8.239478 TCCCAGAGTAAGGGTATACATTATTCT 58.761 37.037 14.30 14.30 46.82 2.40
3479 3577 4.593634 GCTCCCAGAGTAAGGGTATACATT 59.406 45.833 5.01 1.67 46.82 2.71
3480 3578 4.140663 AGCTCCCAGAGTAAGGGTATACAT 60.141 45.833 5.01 0.00 46.82 2.29
3500 3604 4.961730 ACCATGAGAGAAGACAGATTAGCT 59.038 41.667 0.00 0.00 0.00 3.32
3501 3605 5.275067 ACCATGAGAGAAGACAGATTAGC 57.725 43.478 0.00 0.00 0.00 3.09
3507 3611 4.341806 AGAGCATACCATGAGAGAAGACAG 59.658 45.833 0.00 0.00 0.00 3.51
3557 3661 9.847224 ACCATGTAAAGACCGATAAGAAAATAT 57.153 29.630 0.00 0.00 0.00 1.28
3558 3662 9.104965 CACCATGTAAAGACCGATAAGAAAATA 57.895 33.333 0.00 0.00 0.00 1.40
3559 3663 7.415206 GCACCATGTAAAGACCGATAAGAAAAT 60.415 37.037 0.00 0.00 0.00 1.82
3560 3664 6.128117 GCACCATGTAAAGACCGATAAGAAAA 60.128 38.462 0.00 0.00 0.00 2.29
3561 3665 5.353123 GCACCATGTAAAGACCGATAAGAAA 59.647 40.000 0.00 0.00 0.00 2.52
3562 3666 4.873827 GCACCATGTAAAGACCGATAAGAA 59.126 41.667 0.00 0.00 0.00 2.52
3563 3667 4.081365 TGCACCATGTAAAGACCGATAAGA 60.081 41.667 0.00 0.00 0.00 2.10
3564 3668 4.188462 TGCACCATGTAAAGACCGATAAG 58.812 43.478 0.00 0.00 0.00 1.73
3602 3706 4.974645 ATGACAAACTACCTCCAGACAA 57.025 40.909 0.00 0.00 0.00 3.18
3603 3707 4.262894 GGAATGACAAACTACCTCCAGACA 60.263 45.833 0.00 0.00 0.00 3.41
3616 3720 8.918202 AAGTACTGAAATGTAGGAATGACAAA 57.082 30.769 0.00 0.00 0.00 2.83
3617 3721 8.375506 AGAAGTACTGAAATGTAGGAATGACAA 58.624 33.333 0.00 0.00 0.00 3.18
3751 4019 8.352752 CTGACGTAGCTTTCATAATAATCACA 57.647 34.615 0.00 0.00 0.00 3.58
3771 4039 0.528017 TCAGAAGTAGGCAGCTGACG 59.472 55.000 20.43 0.00 32.85 4.35
4065 4334 4.467084 TTGCCCTCCATCGCGTCC 62.467 66.667 5.77 0.00 0.00 4.79
4071 4340 1.144936 CGGTCTCTTGCCCTCCATC 59.855 63.158 0.00 0.00 0.00 3.51
4234 4503 8.410141 GTTAGCAGCCAAATACAATTTATACCA 58.590 33.333 0.00 0.00 0.00 3.25
4265 4534 6.949352 ATTAGGATTGTTCATAGGCAACAG 57.051 37.500 0.00 0.00 35.22 3.16
4326 4596 4.248058 CACACAATGATAGAGTCTGCACA 58.752 43.478 1.86 0.63 0.00 4.57
4336 4606 5.439721 TCATTTCTCCCCACACAATGATAG 58.560 41.667 0.00 0.00 30.60 2.08
4339 4609 3.805066 TCATTTCTCCCCACACAATGA 57.195 42.857 0.00 0.00 32.64 2.57
4425 4697 6.660949 AGCTCATACTTTACTTCCAGCAAAAT 59.339 34.615 0.00 0.00 0.00 1.82
4438 4710 4.467795 AGAGTTGGCTCAGCTCATACTTTA 59.532 41.667 16.96 0.00 42.71 1.85
4462 4734 5.447624 AACAACCAAAATCCGGAGTTTAG 57.552 39.130 27.73 23.17 0.00 1.85
4468 4740 2.362717 GTGGAAACAACCAAAATCCGGA 59.637 45.455 6.61 6.61 46.06 5.14
4504 4776 2.472695 TTGTGCAGAAGAAGGCGTAT 57.527 45.000 0.00 0.00 0.00 3.06
4548 4822 7.639113 TTTTTGACAGAGGAAGTACACATTT 57.361 32.000 0.00 0.00 0.00 2.32
4569 4843 8.472007 TGGCCGGAATAACATCTTATATTTTT 57.528 30.769 5.05 0.00 0.00 1.94
4570 4844 8.472007 TTGGCCGGAATAACATCTTATATTTT 57.528 30.769 5.05 0.00 0.00 1.82
4571 4845 8.650143 ATTGGCCGGAATAACATCTTATATTT 57.350 30.769 5.05 0.00 0.00 1.40
4588 4862 1.909302 ACTCCCTCATATATTGGCCGG 59.091 52.381 0.00 0.00 0.00 6.13
4590 4864 3.519510 TGCTACTCCCTCATATATTGGCC 59.480 47.826 0.00 0.00 0.00 5.36
4591 4865 4.826274 TGCTACTCCCTCATATATTGGC 57.174 45.455 0.00 0.00 0.00 4.52
4647 4921 9.859427 CTTGCACATATAAGAAAGGAATCAAAA 57.141 29.630 0.00 0.00 0.00 2.44
4648 4922 8.469200 CCTTGCACATATAAGAAAGGAATCAAA 58.531 33.333 7.33 0.00 37.02 2.69
4649 4923 7.833682 TCCTTGCACATATAAGAAAGGAATCAA 59.166 33.333 11.80 0.00 40.06 2.57
4650 4924 7.345691 TCCTTGCACATATAAGAAAGGAATCA 58.654 34.615 11.80 0.00 40.06 2.57
4709 5066 4.216257 TGATTAGCCAACAAAAGCTCTGTC 59.784 41.667 2.12 0.00 40.56 3.51
4732 5089 4.042187 GTGGAGATGGATATTTAGCCCTGT 59.958 45.833 0.00 0.00 0.00 4.00
4826 5184 6.759497 ATGCAGAGGTTGGAAGTAAATAAC 57.241 37.500 0.00 0.00 0.00 1.89
4837 5195 5.766222 GCATCTTAATAATGCAGAGGTTGG 58.234 41.667 14.77 0.00 46.93 3.77
4847 5205 9.958285 GTATGTGATACGTGCATCTTAATAATG 57.042 33.333 0.00 0.00 0.00 1.90
4848 5206 9.705290 TGTATGTGATACGTGCATCTTAATAAT 57.295 29.630 0.00 0.00 38.59 1.28
4849 5207 9.535878 TTGTATGTGATACGTGCATCTTAATAA 57.464 29.630 0.00 0.00 38.59 1.40
4850 5208 9.191995 CTTGTATGTGATACGTGCATCTTAATA 57.808 33.333 0.00 0.00 38.59 0.98
4863 5229 5.769367 TCATCGCTACCTTGTATGTGATAC 58.231 41.667 0.00 0.00 36.29 2.24
4871 5237 7.009815 CGTTATTCTTTTCATCGCTACCTTGTA 59.990 37.037 0.00 0.00 0.00 2.41
4878 5244 3.558418 GGGCGTTATTCTTTTCATCGCTA 59.442 43.478 0.00 0.00 41.49 4.26
4879 5245 2.354821 GGGCGTTATTCTTTTCATCGCT 59.645 45.455 0.00 0.00 41.49 4.93
4880 5246 2.354821 AGGGCGTTATTCTTTTCATCGC 59.645 45.455 0.00 0.00 41.13 4.58
4881 5247 3.871594 AGAGGGCGTTATTCTTTTCATCG 59.128 43.478 0.00 0.00 0.00 3.84
4882 5248 6.017852 CCTTAGAGGGCGTTATTCTTTTCATC 60.018 42.308 0.00 0.00 0.00 2.92
4884 5250 5.183228 CCTTAGAGGGCGTTATTCTTTTCA 58.817 41.667 0.00 0.00 0.00 2.69
4885 5251 5.064834 CACCTTAGAGGGCGTTATTCTTTTC 59.935 44.000 0.00 0.00 40.58 2.29
4896 5291 0.390860 CTCCATCACCTTAGAGGGCG 59.609 60.000 0.00 0.00 40.58 6.13
4900 5295 0.390860 CGCCCTCCATCACCTTAGAG 59.609 60.000 0.00 0.00 0.00 2.43
4912 5307 0.683504 TAGTCTCCAACTCGCCCTCC 60.684 60.000 0.00 0.00 39.55 4.30
4924 5319 7.645842 CCAAAATGGATGGGGATTTAGTCTCC 61.646 46.154 0.00 0.00 43.88 3.71
4956 5351 7.651808 CACATGAAACAGGTAGTCAAGAAATT 58.348 34.615 0.00 0.00 0.00 1.82
4957 5352 6.294176 GCACATGAAACAGGTAGTCAAGAAAT 60.294 38.462 0.00 0.00 0.00 2.17
4981 5376 6.572848 ACATGTTTATGGCCGCATGTATGC 62.573 45.833 20.38 6.77 46.66 3.14
4982 5377 3.004629 ACATGTTTATGGCCGCATGTATG 59.995 43.478 20.38 13.64 46.66 2.39
4983 5378 3.221771 ACATGTTTATGGCCGCATGTAT 58.778 40.909 20.38 2.73 46.66 2.29
4984 5379 2.649190 ACATGTTTATGGCCGCATGTA 58.351 42.857 20.38 0.00 46.66 2.29
4985 5380 1.473258 ACATGTTTATGGCCGCATGT 58.527 45.000 17.82 17.82 44.64 3.21
4986 5381 1.597690 CGACATGTTTATGGCCGCATG 60.598 52.381 16.88 16.88 39.27 4.06
4987 5382 0.662619 CGACATGTTTATGGCCGCAT 59.337 50.000 0.00 0.00 39.27 4.73
4988 5383 1.372838 CCGACATGTTTATGGCCGCA 61.373 55.000 0.00 0.00 39.27 5.69
4989 5384 1.355210 CCGACATGTTTATGGCCGC 59.645 57.895 0.00 0.00 39.27 6.53
4990 5385 0.376852 CACCGACATGTTTATGGCCG 59.623 55.000 0.00 0.00 39.27 6.13
4991 5386 0.100503 GCACCGACATGTTTATGGCC 59.899 55.000 0.00 0.00 39.27 5.36
4992 5387 0.248054 CGCACCGACATGTTTATGGC 60.248 55.000 0.00 0.00 39.06 4.40
4993 5388 0.248054 GCGCACCGACATGTTTATGG 60.248 55.000 0.30 2.74 38.66 2.74
4994 5389 0.726827 AGCGCACCGACATGTTTATG 59.273 50.000 11.47 0.00 40.24 1.90
4995 5390 0.726827 CAGCGCACCGACATGTTTAT 59.273 50.000 11.47 0.00 0.00 1.40
4996 5391 0.319986 TCAGCGCACCGACATGTTTA 60.320 50.000 11.47 0.00 0.00 2.01
4997 5392 1.163420 TTCAGCGCACCGACATGTTT 61.163 50.000 11.47 0.00 0.00 2.83
4998 5393 1.568612 CTTCAGCGCACCGACATGTT 61.569 55.000 11.47 0.00 0.00 2.71
4999 5394 2.029288 CTTCAGCGCACCGACATGT 61.029 57.895 11.47 0.00 0.00 3.21
5000 5395 2.743752 CCTTCAGCGCACCGACATG 61.744 63.158 11.47 0.00 0.00 3.21
5001 5396 2.434884 CCTTCAGCGCACCGACAT 60.435 61.111 11.47 0.00 0.00 3.06
5002 5397 2.652382 TTTCCTTCAGCGCACCGACA 62.652 55.000 11.47 0.00 0.00 4.35
5003 5398 1.503818 TTTTCCTTCAGCGCACCGAC 61.504 55.000 11.47 0.00 0.00 4.79
5004 5399 0.816018 TTTTTCCTTCAGCGCACCGA 60.816 50.000 11.47 0.00 0.00 4.69
5005 5400 0.240945 ATTTTTCCTTCAGCGCACCG 59.759 50.000 11.47 0.00 0.00 4.94
5006 5401 1.269448 TCATTTTTCCTTCAGCGCACC 59.731 47.619 11.47 0.00 0.00 5.01
5007 5402 2.589014 CTCATTTTTCCTTCAGCGCAC 58.411 47.619 11.47 0.00 0.00 5.34
5008 5403 1.068333 GCTCATTTTTCCTTCAGCGCA 60.068 47.619 11.47 0.00 0.00 6.09
5009 5404 1.068333 TGCTCATTTTTCCTTCAGCGC 60.068 47.619 0.00 0.00 0.00 5.92
5010 5405 2.995466 TGCTCATTTTTCCTTCAGCG 57.005 45.000 0.00 0.00 0.00 5.18
5011 5406 4.510038 TCTTGCTCATTTTTCCTTCAGC 57.490 40.909 0.00 0.00 0.00 4.26
5012 5407 5.835257 TGTTCTTGCTCATTTTTCCTTCAG 58.165 37.500 0.00 0.00 0.00 3.02
5013 5408 5.593909 TCTGTTCTTGCTCATTTTTCCTTCA 59.406 36.000 0.00 0.00 0.00 3.02
5014 5409 6.076981 TCTGTTCTTGCTCATTTTTCCTTC 57.923 37.500 0.00 0.00 0.00 3.46
5015 5410 5.508657 GCTCTGTTCTTGCTCATTTTTCCTT 60.509 40.000 0.00 0.00 0.00 3.36
5016 5411 4.022503 GCTCTGTTCTTGCTCATTTTTCCT 60.023 41.667 0.00 0.00 0.00 3.36
5017 5412 4.233005 GCTCTGTTCTTGCTCATTTTTCC 58.767 43.478 0.00 0.00 0.00 3.13
5018 5413 4.233005 GGCTCTGTTCTTGCTCATTTTTC 58.767 43.478 0.00 0.00 0.00 2.29
5019 5414 3.638160 TGGCTCTGTTCTTGCTCATTTTT 59.362 39.130 0.00 0.00 0.00 1.94
5020 5415 3.225104 TGGCTCTGTTCTTGCTCATTTT 58.775 40.909 0.00 0.00 0.00 1.82
5021 5416 2.818432 CTGGCTCTGTTCTTGCTCATTT 59.182 45.455 0.00 0.00 0.00 2.32
5022 5417 2.224719 ACTGGCTCTGTTCTTGCTCATT 60.225 45.455 0.00 0.00 0.00 2.57
5023 5418 1.350351 ACTGGCTCTGTTCTTGCTCAT 59.650 47.619 0.00 0.00 0.00 2.90
5024 5419 0.761187 ACTGGCTCTGTTCTTGCTCA 59.239 50.000 0.00 0.00 0.00 4.26
5025 5420 1.803555 GAACTGGCTCTGTTCTTGCTC 59.196 52.381 13.76 0.00 38.61 4.26
5026 5421 1.419387 AGAACTGGCTCTGTTCTTGCT 59.581 47.619 16.32 2.21 45.59 3.91
5027 5422 1.534595 CAGAACTGGCTCTGTTCTTGC 59.465 52.381 18.24 0.00 45.59 4.01
5081 5476 9.216117 GCCGTTTTACCTATGTAGAAATGATAT 57.784 33.333 0.00 0.00 0.00 1.63
5082 5477 7.658575 GGCCGTTTTACCTATGTAGAAATGATA 59.341 37.037 0.00 0.00 0.00 2.15
5083 5478 6.485648 GGCCGTTTTACCTATGTAGAAATGAT 59.514 38.462 0.00 0.00 0.00 2.45
5084 5479 5.818857 GGCCGTTTTACCTATGTAGAAATGA 59.181 40.000 0.00 0.00 0.00 2.57
5085 5480 5.587043 TGGCCGTTTTACCTATGTAGAAATG 59.413 40.000 0.00 0.00 0.00 2.32
5086 5481 5.747342 TGGCCGTTTTACCTATGTAGAAAT 58.253 37.500 0.00 0.00 0.00 2.17
5087 5482 5.163281 TGGCCGTTTTACCTATGTAGAAA 57.837 39.130 0.00 0.00 0.00 2.52
5088 5483 4.822685 TGGCCGTTTTACCTATGTAGAA 57.177 40.909 0.00 0.00 0.00 2.10
5089 5484 4.020396 TGTTGGCCGTTTTACCTATGTAGA 60.020 41.667 0.00 0.00 0.00 2.59
5090 5485 4.255301 TGTTGGCCGTTTTACCTATGTAG 58.745 43.478 0.00 0.00 0.00 2.74
5091 5486 4.283363 TGTTGGCCGTTTTACCTATGTA 57.717 40.909 0.00 0.00 0.00 2.29
5092 5487 3.143211 TGTTGGCCGTTTTACCTATGT 57.857 42.857 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.