Multiple sequence alignment - TraesCS2D01G092000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G092000 chr2D 100.000 2602 0 0 1 2602 43889241 43891842 0.000000e+00 4806.0
1 TraesCS2D01G092000 chr2D 98.094 787 13 2 1817 2602 459777869 459778654 0.000000e+00 1369.0
2 TraesCS2D01G092000 chr3D 97.947 1948 37 3 657 2602 609330390 609328444 0.000000e+00 3373.0
3 TraesCS2D01G092000 chr3D 96.561 1948 61 3 657 2602 98497436 98499379 0.000000e+00 3221.0
4 TraesCS2D01G092000 chr3D 98.348 787 11 2 1817 2602 31791281 31792066 0.000000e+00 1380.0
5 TraesCS2D01G092000 chr3D 81.432 377 64 4 22 396 29862513 29862885 1.170000e-78 303.0
6 TraesCS2D01G092000 chr7D 97.737 1944 43 1 660 2602 497919307 497917364 0.000000e+00 3345.0
7 TraesCS2D01G092000 chr4D 97.072 1947 55 2 657 2602 494026357 494028302 0.000000e+00 3278.0
8 TraesCS2D01G092000 chr4D 93.827 1960 98 14 651 2602 54409197 54407253 0.000000e+00 2928.0
9 TraesCS2D01G092000 chr5A 96.663 1948 63 2 657 2602 32051356 32049409 0.000000e+00 3236.0
10 TraesCS2D01G092000 chr5A 80.087 231 32 9 433 654 538715242 538715017 2.680000e-35 159.0
11 TraesCS2D01G092000 chr1A 92.513 1950 102 15 661 2602 517188879 517190792 0.000000e+00 2752.0
12 TraesCS2D01G092000 chr6D 96.300 1135 42 0 656 1790 410085362 410086496 0.000000e+00 1864.0
13 TraesCS2D01G092000 chr6D 97.041 1014 29 1 657 1670 124597511 124598523 0.000000e+00 1705.0
14 TraesCS2D01G092000 chr6D 97.307 817 21 1 1787 2602 410096545 410097361 0.000000e+00 1386.0
15 TraesCS2D01G092000 chr2A 90.231 1167 71 25 1445 2600 123570719 123571853 0.000000e+00 1483.0
16 TraesCS2D01G092000 chr5D 98.094 787 13 2 1817 2602 45352799 45352014 0.000000e+00 1369.0
17 TraesCS2D01G092000 chr5D 78.407 653 96 32 23 656 524333191 524333817 1.460000e-102 383.0
18 TraesCS2D01G092000 chr5D 79.223 515 54 15 155 650 91332160 91332640 2.510000e-80 309.0
19 TraesCS2D01G092000 chr5D 82.186 247 25 8 427 656 424766826 424766582 7.350000e-46 195.0
20 TraesCS2D01G092000 chr1B 87.952 83 9 1 572 653 654866530 654866448 2.130000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G092000 chr2D 43889241 43891842 2601 False 4806 4806 100.000 1 2602 1 chr2D.!!$F1 2601
1 TraesCS2D01G092000 chr2D 459777869 459778654 785 False 1369 1369 98.094 1817 2602 1 chr2D.!!$F2 785
2 TraesCS2D01G092000 chr3D 609328444 609330390 1946 True 3373 3373 97.947 657 2602 1 chr3D.!!$R1 1945
3 TraesCS2D01G092000 chr3D 98497436 98499379 1943 False 3221 3221 96.561 657 2602 1 chr3D.!!$F3 1945
4 TraesCS2D01G092000 chr3D 31791281 31792066 785 False 1380 1380 98.348 1817 2602 1 chr3D.!!$F2 785
5 TraesCS2D01G092000 chr7D 497917364 497919307 1943 True 3345 3345 97.737 660 2602 1 chr7D.!!$R1 1942
6 TraesCS2D01G092000 chr4D 494026357 494028302 1945 False 3278 3278 97.072 657 2602 1 chr4D.!!$F1 1945
7 TraesCS2D01G092000 chr4D 54407253 54409197 1944 True 2928 2928 93.827 651 2602 1 chr4D.!!$R1 1951
8 TraesCS2D01G092000 chr5A 32049409 32051356 1947 True 3236 3236 96.663 657 2602 1 chr5A.!!$R1 1945
9 TraesCS2D01G092000 chr1A 517188879 517190792 1913 False 2752 2752 92.513 661 2602 1 chr1A.!!$F1 1941
10 TraesCS2D01G092000 chr6D 410085362 410086496 1134 False 1864 1864 96.300 656 1790 1 chr6D.!!$F2 1134
11 TraesCS2D01G092000 chr6D 124597511 124598523 1012 False 1705 1705 97.041 657 1670 1 chr6D.!!$F1 1013
12 TraesCS2D01G092000 chr6D 410096545 410097361 816 False 1386 1386 97.307 1787 2602 1 chr6D.!!$F3 815
13 TraesCS2D01G092000 chr2A 123570719 123571853 1134 False 1483 1483 90.231 1445 2600 1 chr2A.!!$F1 1155
14 TraesCS2D01G092000 chr5D 45352014 45352799 785 True 1369 1369 98.094 1817 2602 1 chr5D.!!$R1 785
15 TraesCS2D01G092000 chr5D 524333191 524333817 626 False 383 383 78.407 23 656 1 chr5D.!!$F2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 612 0.031449 CGTGTTCCCGCAAATTGGTT 59.969 50.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 1822 3.503748 GCTATCTCAAACTGCAACCTTGT 59.496 43.478 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.665185 AAGCGCCTCCACGACAAC 60.665 61.111 2.29 0.00 34.06 3.32
52 53 4.657824 CACGACAACGAGGCCGGT 62.658 66.667 1.90 0.00 42.66 5.28
100 102 4.660938 GGCAAAGGGAGGTGGCGT 62.661 66.667 0.00 0.00 0.00 5.68
104 106 3.429372 AAAGGGAGGTGGCGTGCAA 62.429 57.895 0.00 0.00 0.00 4.08
166 168 4.948257 GGAATACCTTCCGGCGTT 57.052 55.556 6.01 0.00 41.60 4.84
167 169 2.390427 GGAATACCTTCCGGCGTTG 58.610 57.895 6.01 0.00 41.60 4.10
196 198 0.318275 CTTCGACCTAGCGATCCAGC 60.318 60.000 0.00 0.00 40.35 4.85
260 262 3.474806 CGACACCGGAGATGCAAC 58.525 61.111 9.46 0.00 0.00 4.17
262 264 0.172578 CGACACCGGAGATGCAACTA 59.827 55.000 9.46 0.00 0.00 2.24
267 269 1.883084 CGGAGATGCAACTACGGCC 60.883 63.158 20.13 5.11 40.13 6.13
270 272 3.925238 GATGCAACTACGGCCGCG 61.925 66.667 28.58 19.74 0.00 6.46
312 314 0.834687 AGTACCAGCTCCAAACCCGA 60.835 55.000 0.00 0.00 0.00 5.14
317 319 0.035458 CAGCTCCAAACCCGACTCTT 59.965 55.000 0.00 0.00 0.00 2.85
318 320 0.765510 AGCTCCAAACCCGACTCTTT 59.234 50.000 0.00 0.00 0.00 2.52
319 321 0.875059 GCTCCAAACCCGACTCTTTG 59.125 55.000 0.00 0.00 0.00 2.77
325 327 0.883370 AACCCGACTCTTTGGTTCGC 60.883 55.000 0.00 0.00 37.88 4.70
331 333 2.003301 GACTCTTTGGTTCGCTGATCC 58.997 52.381 0.00 0.45 0.00 3.36
338 340 2.905075 TGGTTCGCTGATCCACAATAG 58.095 47.619 4.80 0.00 0.00 1.73
344 346 1.748244 GCTGATCCACAATAGGCTGCA 60.748 52.381 0.50 0.00 0.00 4.41
352 354 0.466739 CAATAGGCTGCATGGAGGCA 60.467 55.000 36.05 24.20 40.98 4.75
355 357 2.274948 TAGGCTGCATGGAGGCAAGG 62.275 60.000 36.05 4.03 44.40 3.61
357 359 2.361992 CTGCATGGAGGCAAGGCA 60.362 61.111 6.28 0.00 44.40 4.75
361 363 2.362120 ATGGAGGCAAGGCACTGC 60.362 61.111 3.19 3.19 40.86 4.40
362 364 2.915504 ATGGAGGCAAGGCACTGCT 61.916 57.895 10.83 0.00 40.86 4.24
363 365 2.749441 GGAGGCAAGGCACTGCTC 60.749 66.667 10.83 6.91 40.86 4.26
378 380 2.485795 GCTCGCCGAGGTCATCTCT 61.486 63.158 16.95 0.00 40.30 3.10
382 384 1.284408 GCCGAGGTCATCTCTAGCG 59.716 63.158 0.00 0.00 40.30 4.26
390 392 2.147958 GTCATCTCTAGCGACGAGGAT 58.852 52.381 0.00 0.00 0.00 3.24
395 397 0.179092 TCTAGCGACGAGGATGACGA 60.179 55.000 0.00 0.00 34.70 4.20
396 398 0.233590 CTAGCGACGAGGATGACGAG 59.766 60.000 0.00 0.00 34.70 4.18
397 399 1.158484 TAGCGACGAGGATGACGAGG 61.158 60.000 0.00 0.00 34.70 4.63
398 400 2.716244 CGACGAGGATGACGAGGG 59.284 66.667 0.00 0.00 34.70 4.30
399 401 2.413765 GACGAGGATGACGAGGGC 59.586 66.667 0.00 0.00 34.70 5.19
400 402 3.140225 GACGAGGATGACGAGGGCC 62.140 68.421 0.00 0.00 34.70 5.80
401 403 3.147595 CGAGGATGACGAGGGCCA 61.148 66.667 6.18 0.00 0.00 5.36
402 404 2.501610 GAGGATGACGAGGGCCAC 59.498 66.667 6.18 0.00 0.00 5.01
403 405 3.432051 GAGGATGACGAGGGCCACG 62.432 68.421 21.92 21.92 0.00 4.94
404 406 3.458163 GGATGACGAGGGCCACGA 61.458 66.667 29.75 8.90 34.70 4.35
405 407 2.202756 GATGACGAGGGCCACGAC 60.203 66.667 29.75 23.26 34.70 4.34
406 408 2.994995 ATGACGAGGGCCACGACA 60.995 61.111 29.75 27.99 39.20 4.35
407 409 2.501223 GATGACGAGGGCCACGACAA 62.501 60.000 29.75 14.19 38.55 3.18
408 410 2.737376 GACGAGGGCCACGACAAC 60.737 66.667 29.75 13.29 34.70 3.32
409 411 4.657824 ACGAGGGCCACGACAACG 62.658 66.667 29.75 12.98 45.75 4.10
411 413 4.309950 GAGGGCCACGACAACGGT 62.310 66.667 6.18 0.00 44.46 4.83
412 414 3.819877 GAGGGCCACGACAACGGTT 62.820 63.158 6.18 0.00 44.46 4.44
413 415 3.351416 GGGCCACGACAACGGTTC 61.351 66.667 4.39 0.00 44.46 3.62
414 416 2.589442 GGCCACGACAACGGTTCA 60.589 61.111 0.00 0.00 44.46 3.18
415 417 2.604174 GGCCACGACAACGGTTCAG 61.604 63.158 0.00 0.00 44.46 3.02
416 418 2.604174 GCCACGACAACGGTTCAGG 61.604 63.158 0.00 0.00 44.46 3.86
417 419 2.604174 CCACGACAACGGTTCAGGC 61.604 63.158 0.00 0.00 44.46 4.85
418 420 1.885388 CACGACAACGGTTCAGGCA 60.885 57.895 0.00 0.00 44.46 4.75
429 431 1.903183 GGTTCAGGCAAGGAGTAGACT 59.097 52.381 0.00 0.00 0.00 3.24
459 461 3.577501 GCGACAGCAAGTTTATCTAGC 57.422 47.619 0.00 0.00 44.35 3.42
461 463 4.360563 GCGACAGCAAGTTTATCTAGCTA 58.639 43.478 0.00 0.00 44.35 3.32
462 464 4.442733 GCGACAGCAAGTTTATCTAGCTAG 59.557 45.833 15.01 15.01 44.35 3.42
463 465 5.583495 CGACAGCAAGTTTATCTAGCTAGT 58.417 41.667 20.10 10.32 33.59 2.57
464 466 6.037098 CGACAGCAAGTTTATCTAGCTAGTT 58.963 40.000 20.10 14.49 33.59 2.24
465 467 6.531948 CGACAGCAAGTTTATCTAGCTAGTTT 59.468 38.462 20.10 11.61 33.59 2.66
466 468 7.701078 CGACAGCAAGTTTATCTAGCTAGTTTA 59.299 37.037 20.10 10.67 33.59 2.01
467 469 9.367444 GACAGCAAGTTTATCTAGCTAGTTTAA 57.633 33.333 20.10 15.39 33.59 1.52
468 470 9.892130 ACAGCAAGTTTATCTAGCTAGTTTAAT 57.108 29.630 20.10 9.03 33.59 1.40
505 507 9.726438 AAGTTTTATCTAGTTTGTGTCTATGCT 57.274 29.630 0.00 0.00 0.00 3.79
506 508 9.726438 AGTTTTATCTAGTTTGTGTCTATGCTT 57.274 29.630 0.00 0.00 0.00 3.91
509 511 9.502091 TTTATCTAGTTTGTGTCTATGCTTTGT 57.498 29.630 0.00 0.00 0.00 2.83
512 514 8.479313 TCTAGTTTGTGTCTATGCTTTGTATG 57.521 34.615 0.00 0.00 0.00 2.39
513 515 8.311109 TCTAGTTTGTGTCTATGCTTTGTATGA 58.689 33.333 0.00 0.00 0.00 2.15
514 516 7.744087 AGTTTGTGTCTATGCTTTGTATGAA 57.256 32.000 0.00 0.00 0.00 2.57
515 517 7.584987 AGTTTGTGTCTATGCTTTGTATGAAC 58.415 34.615 0.00 0.00 0.00 3.18
516 518 7.445402 AGTTTGTGTCTATGCTTTGTATGAACT 59.555 33.333 0.00 0.00 0.00 3.01
517 519 6.968131 TGTGTCTATGCTTTGTATGAACTC 57.032 37.500 0.00 0.00 0.00 3.01
518 520 5.874810 TGTGTCTATGCTTTGTATGAACTCC 59.125 40.000 0.00 0.00 0.00 3.85
519 521 5.005779 GTGTCTATGCTTTGTATGAACTCCG 59.994 44.000 0.00 0.00 0.00 4.63
520 522 4.508124 GTCTATGCTTTGTATGAACTCCGG 59.492 45.833 0.00 0.00 0.00 5.14
521 523 1.448985 TGCTTTGTATGAACTCCGGC 58.551 50.000 0.00 0.00 0.00 6.13
522 524 1.271108 TGCTTTGTATGAACTCCGGCA 60.271 47.619 0.00 0.00 0.00 5.69
523 525 1.810151 GCTTTGTATGAACTCCGGCAA 59.190 47.619 0.00 0.00 0.00 4.52
524 526 2.227865 GCTTTGTATGAACTCCGGCAAA 59.772 45.455 0.00 0.00 0.00 3.68
525 527 3.821841 CTTTGTATGAACTCCGGCAAAC 58.178 45.455 0.00 0.00 0.00 2.93
528 530 4.481368 TGTATGAACTCCGGCAAACTAT 57.519 40.909 0.00 0.00 0.00 2.12
576 578 8.560355 TTGCAGTATGTTTACATTGTATCTGT 57.440 30.769 0.02 0.00 39.31 3.41
577 579 8.560355 TGCAGTATGTTTACATTGTATCTGTT 57.440 30.769 0.02 0.00 39.31 3.16
578 580 8.664798 TGCAGTATGTTTACATTGTATCTGTTC 58.335 33.333 0.02 0.00 39.31 3.18
579 581 8.883731 GCAGTATGTTTACATTGTATCTGTTCT 58.116 33.333 0.02 0.00 39.31 3.01
581 583 8.883731 AGTATGTTTACATTGTATCTGTTCTGC 58.116 33.333 0.02 0.00 37.76 4.26
582 584 6.164408 TGTTTACATTGTATCTGTTCTGCG 57.836 37.500 0.00 0.00 0.00 5.18
583 585 4.857871 TTACATTGTATCTGTTCTGCGC 57.142 40.909 0.00 0.00 0.00 6.09
584 586 2.698803 ACATTGTATCTGTTCTGCGCA 58.301 42.857 10.98 10.98 0.00 6.09
585 587 3.073678 ACATTGTATCTGTTCTGCGCAA 58.926 40.909 13.05 0.00 0.00 4.85
586 588 3.125829 ACATTGTATCTGTTCTGCGCAAG 59.874 43.478 13.05 5.92 43.44 4.01
599 601 2.050077 GCAAGCTTGCGTGTTCCC 60.050 61.111 33.75 8.15 45.11 3.97
600 602 2.252260 CAAGCTTGCGTGTTCCCG 59.748 61.111 14.65 0.00 0.00 5.14
608 610 4.550395 CGTGTTCCCGCAAATTGG 57.450 55.556 0.00 0.00 0.00 3.16
609 611 1.657556 CGTGTTCCCGCAAATTGGT 59.342 52.632 0.00 0.00 0.00 3.67
610 612 0.031449 CGTGTTCCCGCAAATTGGTT 59.969 50.000 0.00 0.00 0.00 3.67
611 613 1.537135 CGTGTTCCCGCAAATTGGTTT 60.537 47.619 0.00 0.00 0.00 3.27
612 614 2.556257 GTGTTCCCGCAAATTGGTTTT 58.444 42.857 0.00 0.00 0.00 2.43
613 615 3.718815 GTGTTCCCGCAAATTGGTTTTA 58.281 40.909 0.00 0.00 0.00 1.52
614 616 3.491639 GTGTTCCCGCAAATTGGTTTTAC 59.508 43.478 0.00 0.00 0.00 2.01
615 617 3.132289 TGTTCCCGCAAATTGGTTTTACA 59.868 39.130 0.00 0.00 0.00 2.41
616 618 3.651803 TCCCGCAAATTGGTTTTACAG 57.348 42.857 0.00 0.00 0.00 2.74
617 619 2.297597 TCCCGCAAATTGGTTTTACAGG 59.702 45.455 0.00 0.00 0.00 4.00
618 620 2.297597 CCCGCAAATTGGTTTTACAGGA 59.702 45.455 0.00 0.00 0.00 3.86
619 621 3.056179 CCCGCAAATTGGTTTTACAGGAT 60.056 43.478 0.00 0.00 0.00 3.24
620 622 4.173256 CCGCAAATTGGTTTTACAGGATC 58.827 43.478 0.00 0.00 0.00 3.36
621 623 4.173256 CGCAAATTGGTTTTACAGGATCC 58.827 43.478 2.48 2.48 0.00 3.36
622 624 4.503910 GCAAATTGGTTTTACAGGATCCC 58.496 43.478 8.55 0.00 0.00 3.85
623 625 4.743493 CAAATTGGTTTTACAGGATCCCG 58.257 43.478 8.55 0.00 0.00 5.14
624 626 3.732048 ATTGGTTTTACAGGATCCCGT 57.268 42.857 8.55 7.06 0.00 5.28
625 627 4.847990 ATTGGTTTTACAGGATCCCGTA 57.152 40.909 8.55 5.82 0.00 4.02
626 628 4.637387 TTGGTTTTACAGGATCCCGTAA 57.363 40.909 15.33 15.33 0.00 3.18
627 629 3.941573 TGGTTTTACAGGATCCCGTAAC 58.058 45.455 18.36 11.63 0.00 2.50
628 630 3.583966 TGGTTTTACAGGATCCCGTAACT 59.416 43.478 18.36 0.00 0.00 2.24
629 631 3.937079 GGTTTTACAGGATCCCGTAACTG 59.063 47.826 18.36 7.41 37.01 3.16
630 632 4.322953 GGTTTTACAGGATCCCGTAACTGA 60.323 45.833 18.36 3.72 35.08 3.41
631 633 5.240121 GTTTTACAGGATCCCGTAACTGAA 58.760 41.667 18.36 9.16 35.08 3.02
632 634 5.486735 TTTACAGGATCCCGTAACTGAAA 57.513 39.130 18.36 4.73 35.08 2.69
633 635 5.486735 TTACAGGATCCCGTAACTGAAAA 57.513 39.130 15.33 0.00 35.08 2.29
634 636 3.939066 ACAGGATCCCGTAACTGAAAAG 58.061 45.455 8.55 0.00 35.08 2.27
635 637 3.326880 ACAGGATCCCGTAACTGAAAAGT 59.673 43.478 8.55 0.00 35.08 2.66
636 638 4.529377 ACAGGATCCCGTAACTGAAAAGTA 59.471 41.667 8.55 0.00 35.08 2.24
637 639 5.109903 CAGGATCCCGTAACTGAAAAGTAG 58.890 45.833 8.55 0.00 32.86 2.57
638 640 4.161754 AGGATCCCGTAACTGAAAAGTAGG 59.838 45.833 8.55 0.00 0.00 3.18
639 641 3.967332 TCCCGTAACTGAAAAGTAGGG 57.033 47.619 7.34 7.34 38.95 3.53
640 642 2.568509 TCCCGTAACTGAAAAGTAGGGG 59.431 50.000 11.59 6.55 38.19 4.79
641 643 2.568509 CCCGTAACTGAAAAGTAGGGGA 59.431 50.000 2.19 0.00 34.00 4.81
642 644 3.593096 CCGTAACTGAAAAGTAGGGGAC 58.407 50.000 0.00 0.00 0.00 4.46
643 645 3.007182 CCGTAACTGAAAAGTAGGGGACA 59.993 47.826 0.00 0.00 0.00 4.02
644 646 4.243270 CGTAACTGAAAAGTAGGGGACAG 58.757 47.826 0.00 0.00 0.00 3.51
645 647 4.021719 CGTAACTGAAAAGTAGGGGACAGA 60.022 45.833 0.00 0.00 0.00 3.41
646 648 4.625607 AACTGAAAAGTAGGGGACAGAG 57.374 45.455 0.00 0.00 0.00 3.35
647 649 3.858135 ACTGAAAAGTAGGGGACAGAGA 58.142 45.455 0.00 0.00 0.00 3.10
648 650 3.835395 ACTGAAAAGTAGGGGACAGAGAG 59.165 47.826 0.00 0.00 0.00 3.20
649 651 4.090090 CTGAAAAGTAGGGGACAGAGAGA 58.910 47.826 0.00 0.00 0.00 3.10
650 652 3.833070 TGAAAAGTAGGGGACAGAGAGAC 59.167 47.826 0.00 0.00 0.00 3.36
651 653 3.544698 AAAGTAGGGGACAGAGAGACA 57.455 47.619 0.00 0.00 0.00 3.41
652 654 2.517998 AGTAGGGGACAGAGAGACAC 57.482 55.000 0.00 0.00 0.00 3.67
653 655 1.096416 GTAGGGGACAGAGAGACACG 58.904 60.000 0.00 0.00 0.00 4.49
654 656 0.034380 TAGGGGACAGAGAGACACGG 60.034 60.000 0.00 0.00 0.00 4.94
754 757 1.524165 CCACGTTTGGGTCGAACCA 60.524 57.895 20.95 20.95 41.02 3.67
758 761 1.231221 CGTTTGGGTCGAACCATTGA 58.769 50.000 25.78 5.42 41.02 2.57
763 766 4.946478 TTGGGTCGAACCATTGAAAATT 57.054 36.364 25.78 0.00 41.02 1.82
1116 1123 5.666265 CCTTGATCTAGGTTTAGGGTTAGGT 59.334 44.000 14.41 0.00 0.00 3.08
1604 1654 8.868916 GTTGTGGCATTTTTATGTAGTTAATGG 58.131 33.333 0.00 0.00 0.00 3.16
1770 1822 5.009631 ACTGCATATGCTTTGGTAGTTCAA 58.990 37.500 27.13 2.47 42.66 2.69
1775 1827 4.853924 ATGCTTTGGTAGTTCAACAAGG 57.146 40.909 0.00 0.00 0.00 3.61
1790 1842 5.129634 TCAACAAGGTTGCAGTTTGAGATA 58.870 37.500 12.14 0.00 0.00 1.98
1886 1938 6.482308 GCTGTTATTTAGTGGGTAGGTACATG 59.518 42.308 0.00 0.00 0.00 3.21
2165 2220 7.872113 AGGGTGAATGATAATCTTGAAAGTC 57.128 36.000 0.00 0.00 0.00 3.01
2291 2346 3.560025 GGTGGTGGATTTCAGACATCTGT 60.560 47.826 8.70 0.00 44.12 3.41
2479 2534 8.504812 TGAAGCATATTACAGACAAGCAATTA 57.495 30.769 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.303643 CCACCTCCCTTTGCCTGTC 60.304 63.158 0.00 0.00 0.00 3.51
138 140 3.259751 GTATTCCACGCCCGCGAC 61.260 66.667 17.16 0.00 42.83 5.19
165 167 3.909258 GTCGAAGAGTCGGCCGCAA 62.909 63.158 23.51 0.00 46.32 4.85
166 168 4.415332 GTCGAAGAGTCGGCCGCA 62.415 66.667 23.51 6.75 46.32 5.69
174 176 1.310904 GGATCGCTAGGTCGAAGAGT 58.689 55.000 0.00 0.00 42.15 3.24
185 187 4.592192 GCTGCCGCTGGATCGCTA 62.592 66.667 0.00 0.00 0.00 4.26
215 217 3.896863 CTTTCCGCAAAGCACGCCC 62.897 63.158 0.00 0.00 32.81 6.13
219 221 2.049156 GCCCTTTCCGCAAAGCAC 60.049 61.111 0.00 0.00 38.19 4.40
221 223 4.419939 CGGCCCTTTCCGCAAAGC 62.420 66.667 0.00 0.00 43.18 3.51
247 249 1.515954 CCGTAGTTGCATCTCCGGT 59.484 57.895 17.92 0.00 33.35 5.28
258 260 4.675029 AGTTGCGCGGCCGTAGTT 62.675 61.111 28.70 5.04 36.67 2.24
270 272 4.099170 CAGAGCGCTGGCAGTTGC 62.099 66.667 18.48 21.27 43.41 4.17
279 281 1.755008 GTACTCCTCCCAGAGCGCT 60.755 63.158 11.27 11.27 37.39 5.92
281 283 1.379977 TGGTACTCCTCCCAGAGCG 60.380 63.158 0.00 0.00 37.39 5.03
312 314 1.347707 TGGATCAGCGAACCAAAGAGT 59.652 47.619 5.36 0.00 31.63 3.24
317 319 2.198827 ATTGTGGATCAGCGAACCAA 57.801 45.000 8.62 0.00 36.30 3.67
318 320 2.419990 CCTATTGTGGATCAGCGAACCA 60.420 50.000 0.00 4.00 32.11 3.67
319 321 2.213499 CCTATTGTGGATCAGCGAACC 58.787 52.381 0.00 0.00 0.00 3.62
325 327 2.336945 TGCAGCCTATTGTGGATCAG 57.663 50.000 0.00 0.00 0.00 2.90
331 333 1.315690 CCTCCATGCAGCCTATTGTG 58.684 55.000 0.00 0.00 0.00 3.33
338 340 3.145551 CCTTGCCTCCATGCAGCC 61.146 66.667 0.00 0.00 43.21 4.85
344 346 2.362120 GCAGTGCCTTGCCTCCAT 60.362 61.111 2.85 0.00 38.13 3.41
357 359 3.069980 GATGACCTCGGCGAGCAGT 62.070 63.158 30.55 23.30 0.00 4.40
361 363 0.871722 CTAGAGATGACCTCGGCGAG 59.128 60.000 29.16 29.16 46.49 5.03
362 364 1.167155 GCTAGAGATGACCTCGGCGA 61.167 60.000 10.14 10.14 46.49 5.54
363 365 1.284408 GCTAGAGATGACCTCGGCG 59.716 63.158 0.00 0.00 46.49 6.46
369 371 0.589223 CCTCGTCGCTAGAGATGACC 59.411 60.000 13.70 0.00 37.93 4.02
378 380 1.158484 CCTCGTCATCCTCGTCGCTA 61.158 60.000 0.00 0.00 0.00 4.26
382 384 2.413765 GCCCTCGTCATCCTCGTC 59.586 66.667 0.00 0.00 0.00 4.20
390 392 3.228017 TTGTCGTGGCCCTCGTCA 61.228 61.111 15.21 13.36 0.00 4.35
395 397 3.819877 GAACCGTTGTCGTGGCCCT 62.820 63.158 0.00 0.00 35.01 5.19
396 398 3.351416 GAACCGTTGTCGTGGCCC 61.351 66.667 0.00 0.00 35.01 5.80
397 399 2.589442 TGAACCGTTGTCGTGGCC 60.589 61.111 0.00 0.00 35.01 5.36
398 400 2.604174 CCTGAACCGTTGTCGTGGC 61.604 63.158 0.00 0.00 35.01 5.01
399 401 2.604174 GCCTGAACCGTTGTCGTGG 61.604 63.158 0.00 0.00 35.01 4.94
400 402 1.433053 TTGCCTGAACCGTTGTCGTG 61.433 55.000 0.00 0.00 35.01 4.35
401 403 1.153329 TTGCCTGAACCGTTGTCGT 60.153 52.632 0.00 0.00 35.01 4.34
402 404 1.569493 CTTGCCTGAACCGTTGTCG 59.431 57.895 0.00 0.00 0.00 4.35
403 405 0.534203 TCCTTGCCTGAACCGTTGTC 60.534 55.000 0.00 0.00 0.00 3.18
404 406 0.535102 CTCCTTGCCTGAACCGTTGT 60.535 55.000 0.00 0.00 0.00 3.32
405 407 0.535102 ACTCCTTGCCTGAACCGTTG 60.535 55.000 0.00 0.00 0.00 4.10
406 408 1.002087 CTACTCCTTGCCTGAACCGTT 59.998 52.381 0.00 0.00 0.00 4.44
407 409 0.608640 CTACTCCTTGCCTGAACCGT 59.391 55.000 0.00 0.00 0.00 4.83
408 410 0.895530 TCTACTCCTTGCCTGAACCG 59.104 55.000 0.00 0.00 0.00 4.44
409 411 1.903183 AGTCTACTCCTTGCCTGAACC 59.097 52.381 0.00 0.00 0.00 3.62
410 412 2.933056 GCAGTCTACTCCTTGCCTGAAC 60.933 54.545 0.00 0.00 0.00 3.18
411 413 1.276421 GCAGTCTACTCCTTGCCTGAA 59.724 52.381 0.00 0.00 0.00 3.02
412 414 0.898320 GCAGTCTACTCCTTGCCTGA 59.102 55.000 0.00 0.00 0.00 3.86
413 415 0.459237 CGCAGTCTACTCCTTGCCTG 60.459 60.000 0.00 0.00 33.10 4.85
414 416 1.608717 CCGCAGTCTACTCCTTGCCT 61.609 60.000 0.00 0.00 33.10 4.75
415 417 1.153549 CCGCAGTCTACTCCTTGCC 60.154 63.158 0.00 0.00 33.10 4.52
416 418 1.811679 GCCGCAGTCTACTCCTTGC 60.812 63.158 0.00 0.00 0.00 4.01
417 419 0.179124 GAGCCGCAGTCTACTCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
418 420 1.324005 GGAGCCGCAGTCTACTCCTT 61.324 60.000 0.00 0.00 0.00 3.36
479 481 9.726438 AGCATAGACACAAACTAGATAAAACTT 57.274 29.630 0.00 0.00 0.00 2.66
480 482 9.726438 AAGCATAGACACAAACTAGATAAAACT 57.274 29.630 0.00 0.00 0.00 2.66
483 485 9.502091 ACAAAGCATAGACACAAACTAGATAAA 57.498 29.630 0.00 0.00 0.00 1.40
486 488 9.102757 CATACAAAGCATAGACACAAACTAGAT 57.897 33.333 0.00 0.00 0.00 1.98
487 489 8.311109 TCATACAAAGCATAGACACAAACTAGA 58.689 33.333 0.00 0.00 0.00 2.43
488 490 8.479313 TCATACAAAGCATAGACACAAACTAG 57.521 34.615 0.00 0.00 0.00 2.57
489 491 8.717821 GTTCATACAAAGCATAGACACAAACTA 58.282 33.333 0.00 0.00 0.00 2.24
490 492 7.445402 AGTTCATACAAAGCATAGACACAAACT 59.555 33.333 0.00 0.00 0.00 2.66
491 493 7.584987 AGTTCATACAAAGCATAGACACAAAC 58.415 34.615 0.00 0.00 0.00 2.93
492 494 7.094805 GGAGTTCATACAAAGCATAGACACAAA 60.095 37.037 0.00 0.00 0.00 2.83
493 495 6.371548 GGAGTTCATACAAAGCATAGACACAA 59.628 38.462 0.00 0.00 0.00 3.33
494 496 5.874810 GGAGTTCATACAAAGCATAGACACA 59.125 40.000 0.00 0.00 0.00 3.72
495 497 5.005779 CGGAGTTCATACAAAGCATAGACAC 59.994 44.000 0.00 0.00 0.00 3.67
496 498 5.109210 CGGAGTTCATACAAAGCATAGACA 58.891 41.667 0.00 0.00 0.00 3.41
497 499 4.508124 CCGGAGTTCATACAAAGCATAGAC 59.492 45.833 0.00 0.00 0.00 2.59
498 500 4.693283 CCGGAGTTCATACAAAGCATAGA 58.307 43.478 0.00 0.00 0.00 1.98
499 501 3.248602 GCCGGAGTTCATACAAAGCATAG 59.751 47.826 5.05 0.00 0.00 2.23
500 502 3.202906 GCCGGAGTTCATACAAAGCATA 58.797 45.455 5.05 0.00 0.00 3.14
501 503 2.017049 GCCGGAGTTCATACAAAGCAT 58.983 47.619 5.05 0.00 0.00 3.79
502 504 1.271108 TGCCGGAGTTCATACAAAGCA 60.271 47.619 5.05 0.00 0.00 3.91
503 505 1.448985 TGCCGGAGTTCATACAAAGC 58.551 50.000 5.05 0.00 0.00 3.51
504 506 3.502211 AGTTTGCCGGAGTTCATACAAAG 59.498 43.478 5.05 0.00 0.00 2.77
505 507 3.482436 AGTTTGCCGGAGTTCATACAAA 58.518 40.909 5.05 0.00 0.00 2.83
506 508 3.134574 AGTTTGCCGGAGTTCATACAA 57.865 42.857 5.05 0.00 0.00 2.41
507 509 2.851263 AGTTTGCCGGAGTTCATACA 57.149 45.000 5.05 0.00 0.00 2.29
508 510 4.694339 AGATAGTTTGCCGGAGTTCATAC 58.306 43.478 5.05 0.00 0.00 2.39
509 511 5.597182 ACTAGATAGTTTGCCGGAGTTCATA 59.403 40.000 5.05 0.00 31.13 2.15
510 512 3.914426 AGATAGTTTGCCGGAGTTCAT 57.086 42.857 5.05 0.00 0.00 2.57
511 513 3.767673 ACTAGATAGTTTGCCGGAGTTCA 59.232 43.478 5.05 0.00 31.13 3.18
512 514 4.388378 ACTAGATAGTTTGCCGGAGTTC 57.612 45.455 5.05 0.00 31.13 3.01
513 515 4.820894 AACTAGATAGTTTGCCGGAGTT 57.179 40.909 5.05 0.00 43.57 3.01
550 552 9.008965 ACAGATACAATGTAAACATACTGCAAA 57.991 29.630 0.00 0.00 35.10 3.68
551 553 8.560355 ACAGATACAATGTAAACATACTGCAA 57.440 30.769 0.00 0.00 35.10 4.08
552 554 8.560355 AACAGATACAATGTAAACATACTGCA 57.440 30.769 0.00 0.00 35.10 4.41
553 555 8.883731 AGAACAGATACAATGTAAACATACTGC 58.116 33.333 0.00 0.00 35.10 4.40
555 557 8.883731 GCAGAACAGATACAATGTAAACATACT 58.116 33.333 0.00 0.00 35.10 2.12
556 558 7.846107 CGCAGAACAGATACAATGTAAACATAC 59.154 37.037 0.00 0.00 35.10 2.39
557 559 7.465379 GCGCAGAACAGATACAATGTAAACATA 60.465 37.037 0.30 0.00 35.10 2.29
558 560 6.675486 GCGCAGAACAGATACAATGTAAACAT 60.675 38.462 0.30 0.00 38.41 2.71
559 561 5.390461 GCGCAGAACAGATACAATGTAAACA 60.390 40.000 0.30 0.00 0.00 2.83
560 562 5.022021 GCGCAGAACAGATACAATGTAAAC 58.978 41.667 0.30 0.00 0.00 2.01
561 563 4.693095 TGCGCAGAACAGATACAATGTAAA 59.307 37.500 5.66 0.00 0.00 2.01
562 564 4.249661 TGCGCAGAACAGATACAATGTAA 58.750 39.130 5.66 0.00 0.00 2.41
563 565 3.855858 TGCGCAGAACAGATACAATGTA 58.144 40.909 5.66 0.00 0.00 2.29
564 566 2.698803 TGCGCAGAACAGATACAATGT 58.301 42.857 5.66 0.00 0.00 2.71
565 567 3.677601 CTTGCGCAGAACAGATACAATG 58.322 45.455 11.31 0.00 0.00 2.82
566 568 2.096496 GCTTGCGCAGAACAGATACAAT 59.904 45.455 11.31 0.00 35.78 2.71
567 569 1.464608 GCTTGCGCAGAACAGATACAA 59.535 47.619 11.31 0.00 35.78 2.41
568 570 1.078709 GCTTGCGCAGAACAGATACA 58.921 50.000 11.31 0.00 35.78 2.29
569 571 1.363744 AGCTTGCGCAGAACAGATAC 58.636 50.000 11.31 0.00 39.10 2.24
570 572 1.733912 CAAGCTTGCGCAGAACAGATA 59.266 47.619 14.65 0.00 39.10 1.98
571 573 0.520404 CAAGCTTGCGCAGAACAGAT 59.480 50.000 14.65 0.00 39.10 2.90
572 574 1.944035 CAAGCTTGCGCAGAACAGA 59.056 52.632 14.65 0.00 39.10 3.41
573 575 1.728426 GCAAGCTTGCGCAGAACAG 60.728 57.895 33.75 6.28 45.11 3.16
574 576 2.332514 GCAAGCTTGCGCAGAACA 59.667 55.556 33.75 0.00 45.11 3.18
583 585 2.252260 CGGGAACACGCAAGCTTG 59.748 61.111 22.44 22.44 45.62 4.01
591 593 0.031449 AACCAATTTGCGGGAACACG 59.969 50.000 0.00 0.00 0.00 4.49
592 594 2.232756 AAACCAATTTGCGGGAACAC 57.767 45.000 0.00 0.00 0.00 3.32
593 595 2.990066 AAAACCAATTTGCGGGAACA 57.010 40.000 0.00 0.00 0.00 3.18
594 596 3.718815 TGTAAAACCAATTTGCGGGAAC 58.281 40.909 0.00 0.00 36.51 3.62
595 597 3.983741 CTGTAAAACCAATTTGCGGGAA 58.016 40.909 0.00 0.00 36.63 3.97
596 598 3.651803 CTGTAAAACCAATTTGCGGGA 57.348 42.857 0.00 0.00 36.63 5.14
598 600 3.651803 TCCTGTAAAACCAATTTGCGG 57.348 42.857 0.00 0.00 39.08 5.69
599 601 4.173256 GGATCCTGTAAAACCAATTTGCG 58.827 43.478 3.84 0.00 36.51 4.85
600 602 4.503910 GGGATCCTGTAAAACCAATTTGC 58.496 43.478 12.58 0.00 34.55 3.68
601 603 4.219725 ACGGGATCCTGTAAAACCAATTTG 59.780 41.667 25.35 0.00 33.13 2.32
602 604 4.412843 ACGGGATCCTGTAAAACCAATTT 58.587 39.130 25.35 0.00 33.13 1.82
603 605 4.042271 ACGGGATCCTGTAAAACCAATT 57.958 40.909 25.35 0.00 33.13 2.32
604 606 3.732048 ACGGGATCCTGTAAAACCAAT 57.268 42.857 25.35 0.00 33.13 3.16
605 607 4.041938 AGTTACGGGATCCTGTAAAACCAA 59.958 41.667 36.83 20.61 45.74 3.67
606 608 3.583966 AGTTACGGGATCCTGTAAAACCA 59.416 43.478 36.83 19.76 45.74 3.67
607 609 3.937079 CAGTTACGGGATCCTGTAAAACC 59.063 47.826 36.83 27.23 45.74 3.27
608 610 4.824289 TCAGTTACGGGATCCTGTAAAAC 58.176 43.478 36.83 30.05 45.74 2.43
609 611 5.486735 TTCAGTTACGGGATCCTGTAAAA 57.513 39.130 36.83 27.47 45.74 1.52
610 612 5.486735 TTTCAGTTACGGGATCCTGTAAA 57.513 39.130 36.83 24.96 45.74 2.01
611 613 5.012354 ACTTTTCAGTTACGGGATCCTGTAA 59.988 40.000 33.39 33.39 43.18 2.41
612 614 4.529377 ACTTTTCAGTTACGGGATCCTGTA 59.471 41.667 26.72 26.72 36.80 2.74
613 615 3.326880 ACTTTTCAGTTACGGGATCCTGT 59.673 43.478 28.92 28.92 39.18 4.00
614 616 3.939066 ACTTTTCAGTTACGGGATCCTG 58.061 45.455 19.66 19.66 0.00 3.86
615 617 4.161754 CCTACTTTTCAGTTACGGGATCCT 59.838 45.833 12.58 0.00 34.06 3.24
616 618 4.439968 CCTACTTTTCAGTTACGGGATCC 58.560 47.826 1.92 1.92 34.06 3.36
617 619 4.439968 CCCTACTTTTCAGTTACGGGATC 58.560 47.826 0.00 0.00 36.54 3.36
618 620 3.199289 CCCCTACTTTTCAGTTACGGGAT 59.801 47.826 0.00 0.00 36.54 3.85
619 621 2.568509 CCCCTACTTTTCAGTTACGGGA 59.431 50.000 0.00 0.00 36.54 5.14
620 622 2.568509 TCCCCTACTTTTCAGTTACGGG 59.431 50.000 0.00 0.00 35.23 5.28
621 623 3.007182 TGTCCCCTACTTTTCAGTTACGG 59.993 47.826 0.00 0.00 34.06 4.02
622 624 4.021719 TCTGTCCCCTACTTTTCAGTTACG 60.022 45.833 0.00 0.00 34.06 3.18
623 625 5.245526 TCTCTGTCCCCTACTTTTCAGTTAC 59.754 44.000 0.00 0.00 34.06 2.50
624 626 5.399991 TCTCTGTCCCCTACTTTTCAGTTA 58.600 41.667 0.00 0.00 34.06 2.24
625 627 4.232091 TCTCTGTCCCCTACTTTTCAGTT 58.768 43.478 0.00 0.00 34.06 3.16
626 628 3.835395 CTCTCTGTCCCCTACTTTTCAGT 59.165 47.826 0.00 0.00 36.99 3.41
627 629 4.081917 GTCTCTCTGTCCCCTACTTTTCAG 60.082 50.000 0.00 0.00 0.00 3.02
628 630 3.833070 GTCTCTCTGTCCCCTACTTTTCA 59.167 47.826 0.00 0.00 0.00 2.69
629 631 3.833070 TGTCTCTCTGTCCCCTACTTTTC 59.167 47.826 0.00 0.00 0.00 2.29
630 632 3.579151 GTGTCTCTCTGTCCCCTACTTTT 59.421 47.826 0.00 0.00 0.00 2.27
631 633 3.166679 GTGTCTCTCTGTCCCCTACTTT 58.833 50.000 0.00 0.00 0.00 2.66
632 634 2.810164 GTGTCTCTCTGTCCCCTACTT 58.190 52.381 0.00 0.00 0.00 2.24
633 635 1.340211 CGTGTCTCTCTGTCCCCTACT 60.340 57.143 0.00 0.00 0.00 2.57
634 636 1.096416 CGTGTCTCTCTGTCCCCTAC 58.904 60.000 0.00 0.00 0.00 3.18
635 637 0.034380 CCGTGTCTCTCTGTCCCCTA 60.034 60.000 0.00 0.00 0.00 3.53
636 638 1.304547 CCGTGTCTCTCTGTCCCCT 60.305 63.158 0.00 0.00 0.00 4.79
637 639 2.352032 CCCGTGTCTCTCTGTCCCC 61.352 68.421 0.00 0.00 0.00 4.81
638 640 2.352032 CCCCGTGTCTCTCTGTCCC 61.352 68.421 0.00 0.00 0.00 4.46
639 641 1.304217 TCCCCGTGTCTCTCTGTCC 60.304 63.158 0.00 0.00 0.00 4.02
640 642 0.322636 TCTCCCCGTGTCTCTCTGTC 60.323 60.000 0.00 0.00 0.00 3.51
641 643 0.333312 ATCTCCCCGTGTCTCTCTGT 59.667 55.000 0.00 0.00 0.00 3.41
642 644 2.350057 TATCTCCCCGTGTCTCTCTG 57.650 55.000 0.00 0.00 0.00 3.35
643 645 3.603965 ATTATCTCCCCGTGTCTCTCT 57.396 47.619 0.00 0.00 0.00 3.10
644 646 4.583489 TGTAATTATCTCCCCGTGTCTCTC 59.417 45.833 0.00 0.00 0.00 3.20
645 647 4.341520 GTGTAATTATCTCCCCGTGTCTCT 59.658 45.833 0.00 0.00 0.00 3.10
646 648 4.618965 GTGTAATTATCTCCCCGTGTCTC 58.381 47.826 0.00 0.00 0.00 3.36
647 649 3.067742 CGTGTAATTATCTCCCCGTGTCT 59.932 47.826 0.00 0.00 0.00 3.41
648 650 3.067180 TCGTGTAATTATCTCCCCGTGTC 59.933 47.826 0.00 0.00 0.00 3.67
649 651 3.025978 TCGTGTAATTATCTCCCCGTGT 58.974 45.455 0.00 0.00 0.00 4.49
650 652 3.720949 TCGTGTAATTATCTCCCCGTG 57.279 47.619 0.00 0.00 0.00 4.94
651 653 5.075493 ACTATCGTGTAATTATCTCCCCGT 58.925 41.667 0.00 0.00 0.00 5.28
652 654 5.640189 ACTATCGTGTAATTATCTCCCCG 57.360 43.478 0.00 0.00 0.00 5.73
653 655 6.435277 TGGTACTATCGTGTAATTATCTCCCC 59.565 42.308 0.00 0.00 0.00 4.81
654 656 7.040201 TGTGGTACTATCGTGTAATTATCTCCC 60.040 40.741 0.00 0.00 0.00 4.30
763 766 7.024340 ACGTAGAAATACGAAGATTAGCTCA 57.976 36.000 14.13 0.00 45.45 4.26
795 798 4.323477 CCGGGCGGTCAGTTCCAA 62.323 66.667 0.00 0.00 0.00 3.53
1116 1123 5.365021 TCAAAAAGCCCCAAATCTGAAAA 57.635 34.783 0.00 0.00 0.00 2.29
1770 1822 3.503748 GCTATCTCAAACTGCAACCTTGT 59.496 43.478 0.00 0.00 0.00 3.16
1775 1827 4.453819 ACAAGAGCTATCTCAAACTGCAAC 59.546 41.667 0.00 0.00 41.81 4.17
1790 1842 5.123027 GCTAATCAGCTACAAAACAAGAGCT 59.877 40.000 0.00 0.00 46.08 4.09
1886 1938 5.063564 GCACTAAGCTACACTGGTAATTGAC 59.936 44.000 0.00 0.00 41.15 3.18
2165 2220 4.080919 TGTCAGATGGTGGATAGTGAAAGG 60.081 45.833 0.00 0.00 0.00 3.11
2291 2346 5.806654 TGCTGATATGTAATGGCAGACTA 57.193 39.130 0.00 0.00 32.64 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.