Multiple sequence alignment - TraesCS2D01G091700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G091700 chr2D 100.000 4984 0 0 1 4984 43743660 43738677 0.000000e+00 9204.0
1 TraesCS2D01G091700 chr2D 93.249 237 15 1 1 236 602655963 602655727 1.030000e-91 348.0
2 TraesCS2D01G091700 chr2B 94.988 2434 77 20 1539 3962 68364781 68362383 0.000000e+00 3777.0
3 TraesCS2D01G091700 chr2B 88.980 608 47 8 939 1535 68365416 68364818 0.000000e+00 734.0
4 TraesCS2D01G091700 chr2B 85.307 456 18 16 372 792 68365996 68365555 4.610000e-115 425.0
5 TraesCS2D01G091700 chr2B 96.154 52 2 0 372 423 68378922 68378871 8.890000e-13 86.1
6 TraesCS2D01G091700 chr2A 88.025 2998 235 69 378 3315 46110588 46107655 0.000000e+00 3434.0
7 TraesCS2D01G091700 chr2A 87.847 1440 154 17 1884 3315 45486962 45485536 0.000000e+00 1670.0
8 TraesCS2D01G091700 chr2A 87.446 462 29 12 1438 1893 45868895 45868457 5.760000e-139 505.0
9 TraesCS2D01G091700 chr2A 89.378 386 36 4 3597 3978 46107590 46107206 9.700000e-132 481.0
10 TraesCS2D01G091700 chr2A 88.724 337 36 1 3635 3969 45485424 45485088 1.290000e-110 411.0
11 TraesCS2D01G091700 chr7D 90.326 1013 88 8 3975 4984 130929253 130928248 0.000000e+00 1319.0
12 TraesCS2D01G091700 chr7D 93.191 235 13 2 1 233 250317630 250317863 4.780000e-90 342.0
13 TraesCS2D01G091700 chr7D 82.143 140 14 5 239 367 577245467 577245606 5.280000e-20 110.0
14 TraesCS2D01G091700 chr7D 78.462 130 16 2 242 359 528679880 528680009 1.920000e-09 75.0
15 TraesCS2D01G091700 chr6B 88.966 1015 100 11 3973 4984 697406182 697407187 0.000000e+00 1243.0
16 TraesCS2D01G091700 chr6B 89.516 992 87 13 3996 4984 578659177 578660154 0.000000e+00 1240.0
17 TraesCS2D01G091700 chr6B 90.209 623 30 17 4363 4984 18209949 18210541 0.000000e+00 784.0
18 TraesCS2D01G091700 chr6B 90.591 372 28 6 3974 4343 18209244 18209610 2.090000e-133 486.0
19 TraesCS2D01G091700 chr6B 87.970 266 25 4 3975 4237 694499634 694499895 1.740000e-79 307.0
20 TraesCS2D01G091700 chr1D 89.973 728 60 6 4248 4964 33590818 33591543 0.000000e+00 928.0
21 TraesCS2D01G091700 chr1D 93.220 236 16 0 1 236 201651262 201651027 1.030000e-91 348.0
22 TraesCS2D01G091700 chr1D 93.220 236 14 2 3 236 441188935 441189170 3.690000e-91 346.0
23 TraesCS2D01G091700 chr1D 88.015 267 25 5 3974 4237 396310934 396311196 4.850000e-80 309.0
24 TraesCS2D01G091700 chr6A 94.492 581 30 2 4404 4984 162456395 162456973 0.000000e+00 894.0
25 TraesCS2D01G091700 chr6A 88.889 441 36 6 3975 4406 162447271 162447707 9.500000e-147 531.0
26 TraesCS2D01G091700 chr6A 93.644 236 15 0 1 236 513754174 513753939 2.210000e-93 353.0
27 TraesCS2D01G091700 chr7B 87.824 772 74 13 4230 4984 257891631 257890863 0.000000e+00 887.0
28 TraesCS2D01G091700 chr7B 87.712 765 74 12 4230 4984 708490713 708489959 0.000000e+00 874.0
29 TraesCS2D01G091700 chr4B 85.910 802 89 17 4163 4957 344355221 344354437 0.000000e+00 833.0
30 TraesCS2D01G091700 chr6D 85.972 777 71 16 3975 4741 119121759 119121011 0.000000e+00 797.0
31 TraesCS2D01G091700 chr6D 93.220 236 14 1 1 236 377821388 377821621 3.690000e-91 346.0
32 TraesCS2D01G091700 chr6D 90.987 233 21 0 3 235 156574317 156574085 1.040000e-81 315.0
33 TraesCS2D01G091700 chr3D 87.425 501 52 8 3973 4469 84573548 84574041 2.600000e-157 566.0
34 TraesCS2D01G091700 chr3D 93.562 233 15 0 1 233 561766535 561766767 1.030000e-91 348.0
35 TraesCS2D01G091700 chr3D 93.220 236 14 2 3 236 68435804 68436039 3.690000e-91 346.0
36 TraesCS2D01G091700 chr3D 89.394 264 23 4 3975 4237 517742395 517742654 1.340000e-85 327.0
37 TraesCS2D01G091700 chr7A 93.590 234 14 1 3 236 290289947 290290179 1.030000e-91 348.0
38 TraesCS2D01G091700 chr1B 86.242 298 31 7 3975 4267 525904746 525905038 1.040000e-81 315.0
39 TraesCS2D01G091700 chr1B 78.987 395 51 16 5 367 300960594 300960200 1.790000e-59 241.0
40 TraesCS2D01G091700 chr1B 77.171 403 53 15 2 367 188257779 188257379 1.090000e-46 198.0
41 TraesCS2D01G091700 chr1B 89.610 77 6 2 292 367 625466403 625466478 4.110000e-16 97.1
42 TraesCS2D01G091700 chr1A 85.496 131 19 0 237 367 38876929 38877059 2.420000e-28 137.0
43 TraesCS2D01G091700 chrUn 75.070 357 44 19 56 367 92688705 92689061 1.880000e-24 124.0
44 TraesCS2D01G091700 chr5A 90.909 77 6 1 291 367 70477826 70477901 8.830000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G091700 chr2D 43738677 43743660 4983 True 9204.000000 9204 100.000000 1 4984 1 chr2D.!!$R1 4983
1 TraesCS2D01G091700 chr2B 68362383 68365996 3613 True 1645.333333 3777 89.758333 372 3962 3 chr2B.!!$R2 3590
2 TraesCS2D01G091700 chr2A 46107206 46110588 3382 True 1957.500000 3434 88.701500 378 3978 2 chr2A.!!$R3 3600
3 TraesCS2D01G091700 chr2A 45485088 45486962 1874 True 1040.500000 1670 88.285500 1884 3969 2 chr2A.!!$R2 2085
4 TraesCS2D01G091700 chr7D 130928248 130929253 1005 True 1319.000000 1319 90.326000 3975 4984 1 chr7D.!!$R1 1009
5 TraesCS2D01G091700 chr6B 697406182 697407187 1005 False 1243.000000 1243 88.966000 3973 4984 1 chr6B.!!$F3 1011
6 TraesCS2D01G091700 chr6B 578659177 578660154 977 False 1240.000000 1240 89.516000 3996 4984 1 chr6B.!!$F1 988
7 TraesCS2D01G091700 chr6B 18209244 18210541 1297 False 635.000000 784 90.400000 3974 4984 2 chr6B.!!$F4 1010
8 TraesCS2D01G091700 chr1D 33590818 33591543 725 False 928.000000 928 89.973000 4248 4964 1 chr1D.!!$F1 716
9 TraesCS2D01G091700 chr6A 162456395 162456973 578 False 894.000000 894 94.492000 4404 4984 1 chr6A.!!$F2 580
10 TraesCS2D01G091700 chr7B 257890863 257891631 768 True 887.000000 887 87.824000 4230 4984 1 chr7B.!!$R1 754
11 TraesCS2D01G091700 chr7B 708489959 708490713 754 True 874.000000 874 87.712000 4230 4984 1 chr7B.!!$R2 754
12 TraesCS2D01G091700 chr4B 344354437 344355221 784 True 833.000000 833 85.910000 4163 4957 1 chr4B.!!$R1 794
13 TraesCS2D01G091700 chr6D 119121011 119121759 748 True 797.000000 797 85.972000 3975 4741 1 chr6D.!!$R1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 583 0.035439 ACCCGCATACTCCCTTGTTG 60.035 55.0 0.00 0.0 0.00 3.33 F
1561 1666 0.041839 CTTGCACTGCTCGACACAAC 60.042 55.0 1.98 0.0 0.00 3.32 F
2253 2364 0.325203 GAGCAGGTCTCCCTCTCCTT 60.325 60.0 0.00 0.0 39.89 3.36 F
3728 3877 0.179137 TTAGACAGGCTGACATCGCG 60.179 55.0 23.66 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1839 0.109532 TGCCAATTCCTGAACGACCA 59.890 50.000 0.00 0.0 0.0 4.02 R
2643 2757 1.335810 CGCCCATCTTCATCCATTGTG 59.664 52.381 0.00 0.0 0.0 3.33 R
3907 4056 0.034767 CAGGCCAAGGATGCAGAAGA 60.035 55.000 5.01 0.0 0.0 2.87 R
4776 5295 1.287739 CTCTCCCTTCTCCTCCTGACT 59.712 57.143 0.00 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.982465 CGTTTGAACAATTCACCCAATTT 57.018 34.783 0.00 0.00 39.87 1.82
23 24 5.973158 CGTTTGAACAATTCACCCAATTTC 58.027 37.500 0.00 0.00 39.87 2.17
24 25 5.521735 CGTTTGAACAATTCACCCAATTTCA 59.478 36.000 0.00 0.00 39.87 2.69
25 26 6.202570 CGTTTGAACAATTCACCCAATTTCAT 59.797 34.615 0.00 0.00 39.87 2.57
26 27 7.354257 GTTTGAACAATTCACCCAATTTCATG 58.646 34.615 0.00 0.00 39.87 3.07
27 28 6.416631 TGAACAATTCACCCAATTTCATGA 57.583 33.333 0.00 0.00 31.79 3.07
28 29 6.824553 TGAACAATTCACCCAATTTCATGAA 58.175 32.000 3.38 3.38 31.79 2.57
29 30 6.930164 TGAACAATTCACCCAATTTCATGAAG 59.070 34.615 8.41 0.00 34.71 3.02
30 31 6.669125 ACAATTCACCCAATTTCATGAAGA 57.331 33.333 8.41 0.72 34.71 2.87
31 32 6.458210 ACAATTCACCCAATTTCATGAAGAC 58.542 36.000 8.41 0.00 34.71 3.01
32 33 6.041865 ACAATTCACCCAATTTCATGAAGACA 59.958 34.615 8.41 0.00 34.71 3.41
33 34 6.862469 ATTCACCCAATTTCATGAAGACAT 57.138 33.333 8.41 0.00 34.71 3.06
34 35 7.064134 CAATTCACCCAATTTCATGAAGACATG 59.936 37.037 8.41 6.57 42.30 3.21
43 44 3.060978 CATGAAGACATGCGTGATTGG 57.939 47.619 14.17 0.00 45.51 3.16
44 45 1.452110 TGAAGACATGCGTGATTGGG 58.548 50.000 14.17 0.00 0.00 4.12
45 46 1.003003 TGAAGACATGCGTGATTGGGA 59.997 47.619 14.17 0.00 0.00 4.37
46 47 2.083774 GAAGACATGCGTGATTGGGAA 58.916 47.619 14.17 0.00 0.00 3.97
47 48 2.198827 AGACATGCGTGATTGGGAAA 57.801 45.000 14.17 0.00 0.00 3.13
48 49 1.812571 AGACATGCGTGATTGGGAAAC 59.187 47.619 14.17 0.00 0.00 2.78
49 50 1.812571 GACATGCGTGATTGGGAAACT 59.187 47.619 14.17 0.00 0.00 2.66
50 51 1.812571 ACATGCGTGATTGGGAAACTC 59.187 47.619 14.17 0.00 0.00 3.01
51 52 1.811965 CATGCGTGATTGGGAAACTCA 59.188 47.619 0.00 0.00 0.00 3.41
52 53 1.234821 TGCGTGATTGGGAAACTCAC 58.765 50.000 0.00 0.00 36.72 3.51
55 56 2.969443 GTGATTGGGAAACTCACGTG 57.031 50.000 9.94 9.94 30.97 4.49
56 57 1.069227 GTGATTGGGAAACTCACGTGC 60.069 52.381 11.67 0.00 30.97 5.34
57 58 1.234821 GATTGGGAAACTCACGTGCA 58.765 50.000 11.67 0.00 0.00 4.57
58 59 1.606668 GATTGGGAAACTCACGTGCAA 59.393 47.619 11.67 7.83 0.00 4.08
59 60 0.736053 TTGGGAAACTCACGTGCAAC 59.264 50.000 11.67 0.23 0.00 4.17
60 61 0.107410 TGGGAAACTCACGTGCAACT 60.107 50.000 11.67 0.00 31.75 3.16
61 62 0.307760 GGGAAACTCACGTGCAACTG 59.692 55.000 11.67 0.88 31.75 3.16
62 63 0.317020 GGAAACTCACGTGCAACTGC 60.317 55.000 11.67 0.00 42.50 4.40
76 77 4.816786 GCAACTGCAAAATGATTTGGTT 57.183 36.364 0.00 0.00 44.93 3.67
77 78 4.529446 GCAACTGCAAAATGATTTGGTTG 58.471 39.130 15.28 15.28 44.93 3.77
78 79 4.272991 GCAACTGCAAAATGATTTGGTTGA 59.727 37.500 19.87 0.00 43.67 3.18
79 80 5.559417 GCAACTGCAAAATGATTTGGTTGAG 60.559 40.000 19.87 7.85 43.67 3.02
80 81 4.060205 ACTGCAAAATGATTTGGTTGAGC 58.940 39.130 0.00 0.00 44.93 4.26
81 82 4.059511 CTGCAAAATGATTTGGTTGAGCA 58.940 39.130 0.00 0.00 44.93 4.26
82 83 4.643463 TGCAAAATGATTTGGTTGAGCAT 58.357 34.783 0.00 0.00 44.93 3.79
83 84 5.791666 TGCAAAATGATTTGGTTGAGCATA 58.208 33.333 0.00 0.00 44.93 3.14
84 85 6.408035 TGCAAAATGATTTGGTTGAGCATAT 58.592 32.000 0.00 0.00 44.93 1.78
85 86 6.314152 TGCAAAATGATTTGGTTGAGCATATG 59.686 34.615 0.00 0.00 44.93 1.78
86 87 6.314400 GCAAAATGATTTGGTTGAGCATATGT 59.686 34.615 4.29 0.00 44.93 2.29
87 88 7.675403 GCAAAATGATTTGGTTGAGCATATGTG 60.675 37.037 4.29 0.00 44.93 3.21
88 89 4.987408 TGATTTGGTTGAGCATATGTGG 57.013 40.909 4.29 0.00 0.00 4.17
89 90 4.598022 TGATTTGGTTGAGCATATGTGGA 58.402 39.130 4.29 0.00 0.00 4.02
90 91 4.398988 TGATTTGGTTGAGCATATGTGGAC 59.601 41.667 4.29 0.00 0.00 4.02
91 92 3.719268 TTGGTTGAGCATATGTGGACT 57.281 42.857 4.29 0.00 0.00 3.85
92 93 3.266510 TGGTTGAGCATATGTGGACTC 57.733 47.619 4.29 3.05 0.00 3.36
93 94 2.571202 TGGTTGAGCATATGTGGACTCA 59.429 45.455 4.29 5.68 37.38 3.41
94 95 3.200605 TGGTTGAGCATATGTGGACTCAT 59.799 43.478 10.41 0.00 38.84 2.90
95 96 3.562973 GGTTGAGCATATGTGGACTCATG 59.437 47.826 10.41 0.00 38.84 3.07
96 97 4.194640 GTTGAGCATATGTGGACTCATGT 58.805 43.478 10.41 0.00 38.84 3.21
97 98 4.492494 TGAGCATATGTGGACTCATGTT 57.508 40.909 4.29 0.00 34.35 2.71
98 99 4.193865 TGAGCATATGTGGACTCATGTTG 58.806 43.478 4.29 0.00 34.35 3.33
99 100 4.080975 TGAGCATATGTGGACTCATGTTGA 60.081 41.667 4.29 0.00 34.35 3.18
100 101 4.194640 AGCATATGTGGACTCATGTTGAC 58.805 43.478 4.29 0.00 0.00 3.18
101 102 3.940852 GCATATGTGGACTCATGTTGACA 59.059 43.478 4.29 0.00 0.00 3.58
102 103 4.395854 GCATATGTGGACTCATGTTGACAA 59.604 41.667 4.29 0.00 0.00 3.18
103 104 5.674569 GCATATGTGGACTCATGTTGACAAC 60.675 44.000 11.54 11.54 0.00 3.32
104 105 2.571212 TGTGGACTCATGTTGACAACC 58.429 47.619 15.59 0.00 0.00 3.77
105 106 2.092699 TGTGGACTCATGTTGACAACCA 60.093 45.455 15.59 1.72 0.00 3.67
106 107 2.948979 GTGGACTCATGTTGACAACCAA 59.051 45.455 15.59 0.00 0.00 3.67
107 108 3.569701 GTGGACTCATGTTGACAACCAAT 59.430 43.478 15.59 0.68 37.08 3.16
108 109 4.759693 GTGGACTCATGTTGACAACCAATA 59.240 41.667 15.59 0.00 37.08 1.90
109 110 5.240623 GTGGACTCATGTTGACAACCAATAA 59.759 40.000 15.59 0.00 37.08 1.40
110 111 5.830457 TGGACTCATGTTGACAACCAATAAA 59.170 36.000 15.59 0.00 37.08 1.40
111 112 6.493115 TGGACTCATGTTGACAACCAATAAAT 59.507 34.615 15.59 0.00 37.08 1.40
112 113 6.808212 GGACTCATGTTGACAACCAATAAATG 59.192 38.462 15.59 10.95 37.08 2.32
113 114 7.288810 ACTCATGTTGACAACCAATAAATGT 57.711 32.000 15.59 1.93 37.08 2.71
114 115 8.402798 ACTCATGTTGACAACCAATAAATGTA 57.597 30.769 15.59 0.00 37.08 2.29
115 116 9.023962 ACTCATGTTGACAACCAATAAATGTAT 57.976 29.630 15.59 2.56 37.08 2.29
116 117 9.507280 CTCATGTTGACAACCAATAAATGTATC 57.493 33.333 15.59 0.00 37.08 2.24
117 118 9.241919 TCATGTTGACAACCAATAAATGTATCT 57.758 29.630 15.59 0.00 37.08 1.98
118 119 9.859427 CATGTTGACAACCAATAAATGTATCTT 57.141 29.630 15.59 0.00 37.08 2.40
167 168 8.704234 TGTGAAACATTTTTATTTGTATTCGGC 58.296 29.630 0.00 0.00 45.67 5.54
168 169 8.921670 GTGAAACATTTTTATTTGTATTCGGCT 58.078 29.630 0.00 0.00 36.32 5.52
169 170 9.482627 TGAAACATTTTTATTTGTATTCGGCTT 57.517 25.926 0.00 0.00 0.00 4.35
170 171 9.739786 GAAACATTTTTATTTGTATTCGGCTTG 57.260 29.630 0.00 0.00 0.00 4.01
171 172 8.825667 AACATTTTTATTTGTATTCGGCTTGT 57.174 26.923 0.00 0.00 0.00 3.16
172 173 9.915629 AACATTTTTATTTGTATTCGGCTTGTA 57.084 25.926 0.00 0.00 0.00 2.41
173 174 9.915629 ACATTTTTATTTGTATTCGGCTTGTAA 57.084 25.926 0.00 0.00 0.00 2.41
177 178 9.968870 TTTTATTTGTATTCGGCTTGTAAAACT 57.031 25.926 0.00 0.00 0.00 2.66
232 233 8.828688 TTGACAATATGTTTGAATGCAAATCA 57.171 26.923 1.18 3.25 45.01 2.57
233 234 8.828688 TGACAATATGTTTGAATGCAAATCAA 57.171 26.923 12.72 12.72 45.01 2.57
234 235 9.438228 TGACAATATGTTTGAATGCAAATCAAT 57.562 25.926 16.26 7.11 45.01 2.57
235 236 9.697250 GACAATATGTTTGAATGCAAATCAATG 57.303 29.630 16.26 13.10 45.01 2.82
236 237 8.670135 ACAATATGTTTGAATGCAAATCAATGG 58.330 29.630 16.26 4.71 45.01 3.16
237 238 5.554822 ATGTTTGAATGCAAATCAATGGC 57.445 34.783 16.26 11.33 45.01 4.40
238 239 3.752222 TGTTTGAATGCAAATCAATGGCC 59.248 39.130 16.26 0.00 45.01 5.36
239 240 2.296831 TGAATGCAAATCAATGGCCG 57.703 45.000 0.00 0.00 0.00 6.13
240 241 1.134759 TGAATGCAAATCAATGGCCGG 60.135 47.619 0.00 0.00 0.00 6.13
241 242 0.462403 AATGCAAATCAATGGCCGGC 60.462 50.000 21.18 21.18 0.00 6.13
242 243 1.615165 ATGCAAATCAATGGCCGGCA 61.615 50.000 30.85 15.30 0.00 5.69
243 244 1.810853 GCAAATCAATGGCCGGCAC 60.811 57.895 30.85 18.39 0.00 5.01
244 245 1.590665 CAAATCAATGGCCGGCACA 59.409 52.632 30.85 23.70 0.00 4.57
245 246 0.176219 CAAATCAATGGCCGGCACAT 59.824 50.000 30.85 24.87 0.00 3.21
246 247 1.408340 CAAATCAATGGCCGGCACATA 59.592 47.619 30.85 14.85 0.00 2.29
247 248 1.999648 AATCAATGGCCGGCACATAT 58.000 45.000 30.85 16.38 0.00 1.78
248 249 1.250328 ATCAATGGCCGGCACATATG 58.750 50.000 30.85 23.91 0.00 1.78
249 250 0.822944 TCAATGGCCGGCACATATGG 60.823 55.000 30.85 19.42 0.00 2.74
250 251 0.822944 CAATGGCCGGCACATATGGA 60.823 55.000 30.85 0.59 0.00 3.41
251 252 0.112995 AATGGCCGGCACATATGGAT 59.887 50.000 30.85 10.64 0.00 3.41
252 253 0.112995 ATGGCCGGCACATATGGATT 59.887 50.000 30.85 3.95 0.00 3.01
253 254 0.822944 TGGCCGGCACATATGGATTG 60.823 55.000 30.85 0.00 0.00 2.67
254 255 1.526575 GGCCGGCACATATGGATTGG 61.527 60.000 30.85 4.92 0.00 3.16
255 256 1.959085 CCGGCACATATGGATTGGC 59.041 57.895 7.80 7.89 0.00 4.52
257 258 1.286880 GGCACATATGGATTGGCGC 59.713 57.895 7.80 0.00 0.00 6.53
258 259 1.081906 GCACATATGGATTGGCGCG 60.082 57.895 7.80 0.00 0.00 6.86
259 260 1.785041 GCACATATGGATTGGCGCGT 61.785 55.000 8.43 0.00 0.00 6.01
260 261 0.662619 CACATATGGATTGGCGCGTT 59.337 50.000 8.43 0.00 0.00 4.84
261 262 0.944386 ACATATGGATTGGCGCGTTC 59.056 50.000 8.43 0.58 0.00 3.95
262 263 0.110688 CATATGGATTGGCGCGTTCG 60.111 55.000 8.43 0.00 39.07 3.95
263 264 0.249699 ATATGGATTGGCGCGTTCGA 60.250 50.000 8.43 0.35 38.10 3.71
264 265 1.149361 TATGGATTGGCGCGTTCGAC 61.149 55.000 8.43 0.00 45.94 4.20
279 280 4.796231 GACGCGCTGTCGACCCAT 62.796 66.667 14.12 0.00 37.96 4.00
280 281 3.405592 GACGCGCTGTCGACCCATA 62.406 63.158 14.12 0.00 37.96 2.74
281 282 2.027605 CGCGCTGTCGACCCATAT 59.972 61.111 14.12 0.00 38.10 1.78
282 283 2.016704 CGCGCTGTCGACCCATATC 61.017 63.158 14.12 0.00 38.10 1.63
283 284 1.067416 GCGCTGTCGACCCATATCA 59.933 57.895 14.12 0.00 38.10 2.15
284 285 0.529773 GCGCTGTCGACCCATATCAA 60.530 55.000 14.12 0.00 38.10 2.57
285 286 1.934589 CGCTGTCGACCCATATCAAA 58.065 50.000 14.12 0.00 38.10 2.69
286 287 2.276201 CGCTGTCGACCCATATCAAAA 58.724 47.619 14.12 0.00 38.10 2.44
287 288 2.675844 CGCTGTCGACCCATATCAAAAA 59.324 45.455 14.12 0.00 38.10 1.94
288 289 3.312421 CGCTGTCGACCCATATCAAAAAT 59.688 43.478 14.12 0.00 38.10 1.82
289 290 4.509970 CGCTGTCGACCCATATCAAAAATA 59.490 41.667 14.12 0.00 38.10 1.40
290 291 5.333339 CGCTGTCGACCCATATCAAAAATAG 60.333 44.000 14.12 0.00 38.10 1.73
291 292 5.049405 GCTGTCGACCCATATCAAAAATAGG 60.049 44.000 14.12 0.00 0.00 2.57
292 293 5.373222 TGTCGACCCATATCAAAAATAGGG 58.627 41.667 14.12 0.00 42.07 3.53
293 294 4.215613 GTCGACCCATATCAAAAATAGGGC 59.784 45.833 3.51 0.00 39.97 5.19
294 295 3.188460 CGACCCATATCAAAAATAGGGCG 59.812 47.826 0.00 0.00 39.97 6.13
295 296 3.496331 ACCCATATCAAAAATAGGGCGG 58.504 45.455 0.00 0.00 39.97 6.13
296 297 3.139397 ACCCATATCAAAAATAGGGCGGA 59.861 43.478 0.00 0.00 39.97 5.54
297 298 3.506067 CCCATATCAAAAATAGGGCGGAC 59.494 47.826 0.00 0.00 0.00 4.79
298 299 3.188460 CCATATCAAAAATAGGGCGGACG 59.812 47.826 0.00 0.00 0.00 4.79
299 300 1.675552 ATCAAAAATAGGGCGGACGG 58.324 50.000 0.00 0.00 0.00 4.79
300 301 1.027792 TCAAAAATAGGGCGGACGGC 61.028 55.000 9.97 9.97 42.51 5.68
341 342 2.654877 ACGAGATTGCCGTCCGTT 59.345 55.556 0.00 0.00 34.97 4.44
342 343 1.005394 ACGAGATTGCCGTCCGTTT 60.005 52.632 0.00 0.00 34.97 3.60
343 344 1.289109 ACGAGATTGCCGTCCGTTTG 61.289 55.000 0.00 0.00 34.97 2.93
344 345 1.794222 GAGATTGCCGTCCGTTTGG 59.206 57.895 0.00 0.00 0.00 3.28
345 346 1.644786 GAGATTGCCGTCCGTTTGGG 61.645 60.000 0.00 0.00 35.24 4.12
346 347 1.969589 GATTGCCGTCCGTTTGGGT 60.970 57.895 0.00 0.00 37.00 4.51
347 348 1.918868 GATTGCCGTCCGTTTGGGTC 61.919 60.000 0.00 0.00 37.00 4.46
348 349 4.973055 TGCCGTCCGTTTGGGTCG 62.973 66.667 0.00 0.00 45.31 4.79
362 363 3.739077 GGTCGCCCCATTGAAATTG 57.261 52.632 0.00 0.00 0.00 2.32
363 364 1.181786 GGTCGCCCCATTGAAATTGA 58.818 50.000 0.00 0.00 0.00 2.57
364 365 1.756538 GGTCGCCCCATTGAAATTGAT 59.243 47.619 0.00 0.00 0.00 2.57
365 366 2.223805 GGTCGCCCCATTGAAATTGATC 60.224 50.000 0.00 0.00 0.00 2.92
366 367 2.689983 GTCGCCCCATTGAAATTGATCT 59.310 45.455 0.00 0.00 0.00 2.75
367 368 2.689471 TCGCCCCATTGAAATTGATCTG 59.311 45.455 0.00 0.00 0.00 2.90
368 369 2.689471 CGCCCCATTGAAATTGATCTGA 59.311 45.455 0.00 0.00 0.00 3.27
369 370 3.319972 CGCCCCATTGAAATTGATCTGAT 59.680 43.478 0.00 0.00 0.00 2.90
370 371 4.628074 GCCCCATTGAAATTGATCTGATG 58.372 43.478 0.00 0.00 0.00 3.07
371 372 4.342951 GCCCCATTGAAATTGATCTGATGA 59.657 41.667 0.00 0.00 0.00 2.92
372 373 5.163385 GCCCCATTGAAATTGATCTGATGAA 60.163 40.000 0.00 0.00 0.00 2.57
373 374 6.630863 GCCCCATTGAAATTGATCTGATGAAA 60.631 38.462 0.00 0.00 0.00 2.69
374 375 7.332557 CCCCATTGAAATTGATCTGATGAAAA 58.667 34.615 0.00 0.00 0.00 2.29
572 582 0.696501 AACCCGCATACTCCCTTGTT 59.303 50.000 0.00 0.00 0.00 2.83
573 583 0.035439 ACCCGCATACTCCCTTGTTG 60.035 55.000 0.00 0.00 0.00 3.33
574 584 0.035439 CCCGCATACTCCCTTGTTGT 60.035 55.000 0.00 0.00 0.00 3.32
575 585 1.613255 CCCGCATACTCCCTTGTTGTT 60.613 52.381 0.00 0.00 0.00 2.83
629 650 2.764547 CCGGTCTCCCCCTTCTCC 60.765 72.222 0.00 0.00 0.00 3.71
632 653 2.764547 GTCTCCCCCTTCTCCCGG 60.765 72.222 0.00 0.00 0.00 5.73
633 654 3.281787 TCTCCCCCTTCTCCCGGT 61.282 66.667 0.00 0.00 0.00 5.28
675 709 2.942879 GCACGGATCAAACACGCA 59.057 55.556 0.00 0.00 0.00 5.24
676 710 1.154413 GCACGGATCAAACACGCAG 60.154 57.895 0.00 0.00 0.00 5.18
677 711 1.565156 GCACGGATCAAACACGCAGA 61.565 55.000 0.00 0.00 0.00 4.26
689 723 2.076863 ACACGCAGAAAACCTAGCATC 58.923 47.619 0.00 0.00 0.00 3.91
758 795 0.685097 TTCGTCTTCTTCCCCCACTG 59.315 55.000 0.00 0.00 0.00 3.66
792 833 3.192633 GGTACGGCCACAATCTCATTTTT 59.807 43.478 2.24 0.00 37.17 1.94
793 834 3.575965 ACGGCCACAATCTCATTTTTC 57.424 42.857 2.24 0.00 0.00 2.29
794 835 3.157087 ACGGCCACAATCTCATTTTTCT 58.843 40.909 2.24 0.00 0.00 2.52
795 836 3.573967 ACGGCCACAATCTCATTTTTCTT 59.426 39.130 2.24 0.00 0.00 2.52
796 837 4.168760 CGGCCACAATCTCATTTTTCTTC 58.831 43.478 2.24 0.00 0.00 2.87
799 840 5.866092 GGCCACAATCTCATTTTTCTTCTTC 59.134 40.000 0.00 0.00 0.00 2.87
803 844 7.115947 CCACAATCTCATTTTTCTTCTTCTTGC 59.884 37.037 0.00 0.00 0.00 4.01
807 848 9.828039 AATCTCATTTTTCTTCTTCTTGCTTTT 57.172 25.926 0.00 0.00 0.00 2.27
815 856 4.580580 TCTTCTTCTTGCTTTTCACCTTCC 59.419 41.667 0.00 0.00 0.00 3.46
816 857 3.897239 TCTTCTTGCTTTTCACCTTCCA 58.103 40.909 0.00 0.00 0.00 3.53
821 862 3.749665 TGCTTTTCACCTTCCATTTGG 57.250 42.857 0.00 0.00 0.00 3.28
824 865 4.651503 TGCTTTTCACCTTCCATTTGGTTA 59.348 37.500 0.00 0.00 33.75 2.85
825 866 5.129485 TGCTTTTCACCTTCCATTTGGTTAA 59.871 36.000 0.00 0.00 33.75 2.01
827 868 6.540551 GCTTTTCACCTTCCATTTGGTTAAAA 59.459 34.615 0.00 0.00 37.20 1.52
836 877 4.550076 CATTTGGTTAAAATGCCCTGGA 57.450 40.909 0.00 0.00 46.43 3.86
837 878 5.101648 CATTTGGTTAAAATGCCCTGGAT 57.898 39.130 0.00 0.00 46.43 3.41
838 879 5.499313 CATTTGGTTAAAATGCCCTGGATT 58.501 37.500 0.00 0.00 46.43 3.01
839 880 4.550076 TTGGTTAAAATGCCCTGGATTG 57.450 40.909 0.00 0.00 0.00 2.67
840 881 2.235898 TGGTTAAAATGCCCTGGATTGC 59.764 45.455 0.00 0.00 0.00 3.56
846 887 1.868713 ATGCCCTGGATTGCATTTGA 58.131 45.000 3.43 0.00 45.52 2.69
847 888 1.187974 TGCCCTGGATTGCATTTGAG 58.812 50.000 0.00 0.00 31.31 3.02
848 889 0.462789 GCCCTGGATTGCATTTGAGG 59.537 55.000 0.00 0.00 0.00 3.86
849 890 0.462789 CCCTGGATTGCATTTGAGGC 59.537 55.000 0.00 0.00 0.00 4.70
850 891 0.462789 CCTGGATTGCATTTGAGGCC 59.537 55.000 0.00 0.00 0.00 5.19
851 892 0.462789 CTGGATTGCATTTGAGGCCC 59.537 55.000 0.00 0.00 0.00 5.80
852 893 1.321805 TGGATTGCATTTGAGGCCCG 61.322 55.000 0.00 0.00 0.00 6.13
853 894 1.322538 GGATTGCATTTGAGGCCCGT 61.323 55.000 0.00 0.00 0.00 5.28
854 895 0.179129 GATTGCATTTGAGGCCCGTG 60.179 55.000 0.00 0.00 0.00 4.94
855 896 0.611618 ATTGCATTTGAGGCCCGTGA 60.612 50.000 0.00 0.00 0.00 4.35
856 897 0.825425 TTGCATTTGAGGCCCGTGAA 60.825 50.000 0.00 0.00 0.00 3.18
857 898 0.611618 TGCATTTGAGGCCCGTGAAT 60.612 50.000 0.00 0.00 0.00 2.57
858 899 0.179129 GCATTTGAGGCCCGTGAATG 60.179 55.000 0.00 6.74 0.00 2.67
859 900 1.176527 CATTTGAGGCCCGTGAATGT 58.823 50.000 0.00 0.00 0.00 2.71
860 901 1.545582 CATTTGAGGCCCGTGAATGTT 59.454 47.619 0.00 0.00 0.00 2.71
861 902 2.570415 TTTGAGGCCCGTGAATGTTA 57.430 45.000 0.00 0.00 0.00 2.41
878 939 8.015658 GTGAATGTTATTACCAGTCTGTTTGAC 58.984 37.037 0.00 0.00 45.67 3.18
889 950 3.973657 GTCTGTTTGACTCGAGGTAACA 58.026 45.455 18.41 19.81 42.21 2.41
890 951 3.982058 GTCTGTTTGACTCGAGGTAACAG 59.018 47.826 30.44 30.44 44.27 3.16
895 956 1.204704 TGACTCGAGGTAACAGGCATG 59.795 52.381 18.41 0.00 41.41 4.06
910 971 6.790285 ACAGGCATGTTTCATTTCATTTTC 57.210 33.333 0.00 0.00 35.63 2.29
911 972 5.702209 ACAGGCATGTTTCATTTCATTTTCC 59.298 36.000 0.00 0.00 35.63 3.13
912 973 5.935789 CAGGCATGTTTCATTTCATTTTCCT 59.064 36.000 0.00 0.00 0.00 3.36
913 974 6.428771 CAGGCATGTTTCATTTCATTTTCCTT 59.571 34.615 0.00 0.00 0.00 3.36
916 977 7.804600 GGCATGTTTCATTTCATTTTCCTTTTC 59.195 33.333 0.00 0.00 0.00 2.29
917 978 8.344098 GCATGTTTCATTTCATTTTCCTTTTCA 58.656 29.630 0.00 0.00 0.00 2.69
921 982 9.584839 GTTTCATTTCATTTTCCTTTTCATTCG 57.415 29.630 0.00 0.00 0.00 3.34
924 985 4.799564 TCATTTTCCTTTTCATTCGGGG 57.200 40.909 0.00 0.00 0.00 5.73
925 986 4.156477 TCATTTTCCTTTTCATTCGGGGT 58.844 39.130 0.00 0.00 0.00 4.95
926 987 4.591072 TCATTTTCCTTTTCATTCGGGGTT 59.409 37.500 0.00 0.00 0.00 4.11
927 988 5.775701 TCATTTTCCTTTTCATTCGGGGTTA 59.224 36.000 0.00 0.00 0.00 2.85
928 989 6.267928 TCATTTTCCTTTTCATTCGGGGTTAA 59.732 34.615 0.00 0.00 0.00 2.01
930 991 6.673839 TTTCCTTTTCATTCGGGGTTAATT 57.326 33.333 0.00 0.00 0.00 1.40
932 993 6.762702 TCCTTTTCATTCGGGGTTAATTAC 57.237 37.500 0.00 0.00 0.00 1.89
933 994 5.653330 TCCTTTTCATTCGGGGTTAATTACC 59.347 40.000 0.00 0.00 46.99 2.85
948 1009 0.541392 TTACCGCTGATGCCTGTGAT 59.459 50.000 0.00 0.00 35.36 3.06
958 1019 2.330440 TGCCTGTGATATGTGCGATT 57.670 45.000 0.00 0.00 0.00 3.34
960 1021 4.006780 TGCCTGTGATATGTGCGATTAT 57.993 40.909 0.00 0.00 0.00 1.28
969 1030 7.041848 TGTGATATGTGCGATTATTTCAGGAAG 60.042 37.037 0.00 0.00 0.00 3.46
982 1043 6.625873 ATTTCAGGAAGTTTCAGTGAACTC 57.374 37.500 4.68 2.85 38.86 3.01
983 1044 4.753516 TCAGGAAGTTTCAGTGAACTCA 57.246 40.909 4.68 0.00 38.86 3.41
984 1045 4.697514 TCAGGAAGTTTCAGTGAACTCAG 58.302 43.478 4.68 0.71 38.86 3.35
986 1047 3.135530 AGGAAGTTTCAGTGAACTCAGCT 59.864 43.478 4.68 0.00 38.86 4.24
989 1050 6.211584 AGGAAGTTTCAGTGAACTCAGCTATA 59.788 38.462 4.68 0.00 38.86 1.31
990 1051 6.311690 GGAAGTTTCAGTGAACTCAGCTATAC 59.688 42.308 4.68 0.00 38.86 1.47
991 1052 6.346477 AGTTTCAGTGAACTCAGCTATACA 57.654 37.500 4.68 0.00 34.94 2.29
992 1053 6.393990 AGTTTCAGTGAACTCAGCTATACAG 58.606 40.000 4.68 0.00 34.94 2.74
993 1054 5.984695 TTCAGTGAACTCAGCTATACAGT 57.015 39.130 0.08 0.00 0.00 3.55
994 1055 7.176865 AGTTTCAGTGAACTCAGCTATACAGTA 59.823 37.037 4.68 0.00 34.94 2.74
995 1056 6.438259 TCAGTGAACTCAGCTATACAGTAC 57.562 41.667 0.00 0.00 0.00 2.73
996 1057 5.064834 TCAGTGAACTCAGCTATACAGTACG 59.935 44.000 0.00 0.00 0.00 3.67
1003 1064 6.053650 ACTCAGCTATACAGTACGTACATGA 58.946 40.000 26.55 11.62 31.27 3.07
1199 1264 6.519679 ACGAGTCATGTGGTAAATGTACTA 57.480 37.500 0.00 0.00 0.00 1.82
1238 1303 3.139077 CGAGTTATTGGCTGGGTAATCC 58.861 50.000 0.00 0.00 0.00 3.01
1239 1304 3.433031 CGAGTTATTGGCTGGGTAATCCA 60.433 47.826 0.00 0.00 44.79 3.41
1240 1305 4.532834 GAGTTATTGGCTGGGTAATCCAA 58.467 43.478 0.00 0.00 46.51 3.53
1264 1336 5.538082 TGTTTGGAGGGGAATTAATGGTA 57.462 39.130 0.00 0.00 0.00 3.25
1272 1344 7.628505 TGGAGGGGAATTAATGGTAAACTAGTA 59.371 37.037 0.00 0.00 0.00 1.82
1277 1349 9.543783 GGGAATTAATGGTAAACTAGTACTGAG 57.456 37.037 5.39 1.88 0.00 3.35
1328 1400 3.132289 GTCGAAATGACCATGACCTCCTA 59.868 47.826 0.00 0.00 42.04 2.94
1471 1543 9.037737 GTTTATGGTAAAATCTGTACGCTCATA 57.962 33.333 0.00 0.00 0.00 2.15
1517 1589 9.643693 ATTTGAAATGAACATCTGTATGGTTTC 57.356 29.630 0.00 0.00 37.43 2.78
1518 1590 6.841119 TGAAATGAACATCTGTATGGTTTCG 58.159 36.000 0.00 0.00 37.43 3.46
1535 1607 4.262164 GGTTTCGTGTGGTAGTCCTTCTAA 60.262 45.833 0.00 0.00 34.23 2.10
1536 1608 5.291971 GTTTCGTGTGGTAGTCCTTCTAAA 58.708 41.667 0.00 0.00 34.23 1.85
1537 1609 5.733620 TTCGTGTGGTAGTCCTTCTAAAT 57.266 39.130 0.00 0.00 34.23 1.40
1553 1658 6.238320 CCTTCTAAATGATACTTGCACTGCTC 60.238 42.308 1.98 0.00 0.00 4.26
1558 1663 1.656095 GATACTTGCACTGCTCGACAC 59.344 52.381 1.98 0.00 0.00 3.67
1559 1664 0.387565 TACTTGCACTGCTCGACACA 59.612 50.000 1.98 0.00 0.00 3.72
1560 1665 0.461870 ACTTGCACTGCTCGACACAA 60.462 50.000 1.98 0.00 0.00 3.33
1561 1666 0.041839 CTTGCACTGCTCGACACAAC 60.042 55.000 1.98 0.00 0.00 3.32
1632 1740 1.269012 CTTGTTTGGATGTGCCCCAT 58.731 50.000 0.00 0.00 36.13 4.00
1757 1865 3.084786 GTTCAGGAATTGGCAGTAGCTT 58.915 45.455 0.00 0.00 41.70 3.74
1785 1893 2.752903 ACAGGCTTTGTTTTCGAGTTGT 59.247 40.909 0.00 0.00 36.31 3.32
1796 1904 1.174783 TCGAGTTGTGCCTCTAGACC 58.825 55.000 0.00 0.00 0.00 3.85
1867 1975 6.272324 ACACTGCCTACATGTATAATATGGGT 59.728 38.462 5.91 0.00 0.00 4.51
1947 2055 9.003658 CCATCCATGTCTGAAACTAATATTACC 57.996 37.037 0.00 0.00 0.00 2.85
1949 2057 8.014070 TCCATGTCTGAAACTAATATTACCGA 57.986 34.615 0.00 0.00 0.00 4.69
1950 2058 8.141909 TCCATGTCTGAAACTAATATTACCGAG 58.858 37.037 0.00 0.00 0.00 4.63
1951 2059 8.141909 CCATGTCTGAAACTAATATTACCGAGA 58.858 37.037 0.00 0.00 0.00 4.04
1996 2104 5.352569 CACAAAAGGTAGTCTGGCTAATGAG 59.647 44.000 0.00 0.00 0.00 2.90
1997 2105 4.762289 AAAGGTAGTCTGGCTAATGAGG 57.238 45.455 0.00 0.00 0.00 3.86
1998 2106 3.406512 AGGTAGTCTGGCTAATGAGGT 57.593 47.619 0.00 0.00 0.00 3.85
1999 2107 3.034635 AGGTAGTCTGGCTAATGAGGTG 58.965 50.000 0.00 0.00 0.00 4.00
2103 2211 3.885484 AACTCTGAACGAATGCAAGTG 57.115 42.857 0.00 0.00 0.00 3.16
2253 2364 0.325203 GAGCAGGTCTCCCTCTCCTT 60.325 60.000 0.00 0.00 39.89 3.36
2254 2365 0.325203 AGCAGGTCTCCCTCTCCTTC 60.325 60.000 0.00 0.00 39.89 3.46
2255 2366 0.325203 GCAGGTCTCCCTCTCCTTCT 60.325 60.000 0.00 0.00 39.89 2.85
2642 2756 2.684943 TGGTACTGTTCTTGGACCTGA 58.315 47.619 0.00 0.00 0.00 3.86
2643 2757 2.367567 TGGTACTGTTCTTGGACCTGAC 59.632 50.000 0.00 0.00 0.00 3.51
2680 2797 2.209838 GCGTAGTGCAAGAGCTCATA 57.790 50.000 17.77 0.00 45.45 2.15
2715 2832 1.211457 GGCCTGACAAGTCATCCTGAT 59.789 52.381 3.01 0.00 39.13 2.90
2940 3057 1.709760 CACGCTTACGGACATGCAG 59.290 57.895 0.00 0.00 46.04 4.41
2967 3084 2.087646 GTCTTCCATGCCTCAGTTTCC 58.912 52.381 0.00 0.00 0.00 3.13
3289 3427 5.178096 TGAGTTGAATTGCATCCTCCTTA 57.822 39.130 0.00 0.00 0.00 2.69
3317 3456 8.723942 AACATGGATAAGATTTACTCTGTGAC 57.276 34.615 0.00 0.00 33.29 3.67
3344 3483 9.022915 CATGTATAATGTGCATTGTTGTTTAGG 57.977 33.333 7.60 0.00 30.03 2.69
3351 3490 2.890945 GCATTGTTGTTTAGGGGTGACT 59.109 45.455 0.00 0.00 0.00 3.41
3430 3571 8.791675 TGTAATTCTGACATTAAAATCAGTGCA 58.208 29.630 15.34 6.99 42.52 4.57
3474 3615 0.534412 TGGGTGTTTTGTTGCTGTGG 59.466 50.000 0.00 0.00 0.00 4.17
3482 3623 1.786937 TTGTTGCTGTGGGGAAATGT 58.213 45.000 0.00 0.00 0.00 2.71
3483 3624 2.666272 TGTTGCTGTGGGGAAATGTA 57.334 45.000 0.00 0.00 0.00 2.29
3484 3625 3.168035 TGTTGCTGTGGGGAAATGTAT 57.832 42.857 0.00 0.00 0.00 2.29
3485 3626 3.505386 TGTTGCTGTGGGGAAATGTATT 58.495 40.909 0.00 0.00 0.00 1.89
3486 3627 3.509575 TGTTGCTGTGGGGAAATGTATTC 59.490 43.478 0.00 0.00 0.00 1.75
3490 3631 4.837860 TGCTGTGGGGAAATGTATTCTTTT 59.162 37.500 0.00 0.00 0.00 2.27
3491 3632 5.047377 TGCTGTGGGGAAATGTATTCTTTTC 60.047 40.000 3.07 3.07 37.15 2.29
3494 3635 7.093945 GCTGTGGGGAAATGTATTCTTTTCTTA 60.094 37.037 9.53 0.00 37.64 2.10
3517 3658 3.070018 ACTTCTGTGAAATTCCTCTGCG 58.930 45.455 0.00 0.00 0.00 5.18
3519 3660 0.449388 CTGTGAAATTCCTCTGCGCC 59.551 55.000 4.18 0.00 0.00 6.53
3525 3666 0.539438 AATTCCTCTGCGCCCAACAA 60.539 50.000 4.18 0.00 0.00 2.83
3527 3668 1.172180 TTCCTCTGCGCCCAACAAAG 61.172 55.000 4.18 0.00 0.00 2.77
3566 3707 3.367932 ACGTTGCGACTCATTATGTCTTG 59.632 43.478 1.84 0.00 32.70 3.02
3570 3711 4.820897 TGCGACTCATTATGTCTTGTTCT 58.179 39.130 0.00 0.00 32.70 3.01
3577 3718 7.375834 ACTCATTATGTCTTGTTCTGACGTTA 58.624 34.615 0.00 0.00 37.26 3.18
3719 3868 1.277273 GGGTTAACCGTTAGACAGGCT 59.723 52.381 18.39 0.00 36.71 4.58
3728 3877 0.179137 TTAGACAGGCTGACATCGCG 60.179 55.000 23.66 0.00 0.00 5.87
3737 3886 1.493950 CTGACATCGCGATGGAAGGC 61.494 60.000 42.28 28.11 42.91 4.35
3738 3887 1.521457 GACATCGCGATGGAAGGCA 60.521 57.895 42.28 7.47 42.91 4.75
3755 3904 2.549754 AGGCAACAAGATGAAGAACACG 59.450 45.455 0.00 0.00 41.41 4.49
3788 3937 5.181009 CAAGGCATCTCAGACAACAAGATA 58.819 41.667 0.00 0.00 0.00 1.98
3824 3973 1.003646 AGTCTGTCAGGAGGGAGCTA 58.996 55.000 0.00 0.00 0.00 3.32
3856 4005 2.295885 CTTCCAGGTGAAGGATGATGC 58.704 52.381 0.00 0.00 45.66 3.91
3868 4017 1.153086 ATGATGCGCTTCTGTCCCC 60.153 57.895 22.11 0.00 0.00 4.81
3907 4056 1.373497 CAGCGGCTGAGAGAAACGT 60.373 57.895 25.33 0.00 32.44 3.99
3969 4120 3.539604 CTGTCATGGTTTCATCTCCTCC 58.460 50.000 0.00 0.00 0.00 4.30
3983 4134 3.985127 TCTCCTCCGGGTGAGTAAATAA 58.015 45.455 17.25 0.00 39.65 1.40
3988 4139 5.842328 TCCTCCGGGTGAGTAAATAACATAT 59.158 40.000 0.00 0.00 39.65 1.78
3991 4142 7.817962 CCTCCGGGTGAGTAAATAACATATAAG 59.182 40.741 0.00 0.00 39.65 1.73
4107 4264 7.784633 AAATTGTCCAGTGTTTTACAATTGG 57.215 32.000 10.83 0.00 46.45 3.16
4113 4270 4.286910 CAGTGTTTTACAATTGGTCGTGG 58.713 43.478 10.83 0.00 0.00 4.94
4143 4300 2.119029 GGGGCCCGCATGTAAGAAC 61.119 63.158 17.79 0.00 0.00 3.01
4171 4328 6.925718 TGATTGTTTTGACAGTTTGTTTGACA 59.074 30.769 0.00 0.00 0.00 3.58
4207 4365 1.073025 GCCCACATGTCAGTGTCCA 59.927 57.895 0.00 0.00 37.82 4.02
4395 4901 2.060980 CGCCTAGCTCCCTTCCAGT 61.061 63.158 0.00 0.00 0.00 4.00
4776 5295 3.081409 GGTGGAGCTCGGGCCTTA 61.081 66.667 2.00 0.00 39.73 2.69
4967 5492 2.510664 TTTTTGAAACAGCCGGCCT 58.489 47.368 26.15 7.86 0.00 5.19
4979 5504 0.963355 GCCGGCCTGTGATTTGGTAA 60.963 55.000 18.11 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.521735 TGAAATTGGGTGAATTGTTCAAACG 59.478 36.000 0.00 0.00 42.15 3.60
1 2 6.917217 TGAAATTGGGTGAATTGTTCAAAC 57.083 33.333 0.00 0.00 42.15 2.93
2 3 7.278135 TCATGAAATTGGGTGAATTGTTCAAA 58.722 30.769 0.00 0.00 42.15 2.69
6 7 6.930722 GTCTTCATGAAATTGGGTGAATTGTT 59.069 34.615 9.88 0.00 34.30 2.83
7 8 6.041865 TGTCTTCATGAAATTGGGTGAATTGT 59.958 34.615 9.88 0.00 34.30 2.71
8 9 6.457355 TGTCTTCATGAAATTGGGTGAATTG 58.543 36.000 9.88 0.00 34.30 2.32
9 10 6.669125 TGTCTTCATGAAATTGGGTGAATT 57.331 33.333 9.88 0.00 35.65 2.17
10 11 6.862469 ATGTCTTCATGAAATTGGGTGAAT 57.138 33.333 9.88 0.00 32.51 2.57
24 25 2.019249 CCCAATCACGCATGTCTTCAT 58.981 47.619 0.00 0.00 34.21 2.57
25 26 1.003003 TCCCAATCACGCATGTCTTCA 59.997 47.619 0.00 0.00 0.00 3.02
26 27 1.737838 TCCCAATCACGCATGTCTTC 58.262 50.000 0.00 0.00 0.00 2.87
27 28 2.198827 TTCCCAATCACGCATGTCTT 57.801 45.000 0.00 0.00 0.00 3.01
28 29 1.812571 GTTTCCCAATCACGCATGTCT 59.187 47.619 0.00 0.00 0.00 3.41
29 30 1.812571 AGTTTCCCAATCACGCATGTC 59.187 47.619 0.00 0.00 0.00 3.06
30 31 1.812571 GAGTTTCCCAATCACGCATGT 59.187 47.619 0.00 0.00 0.00 3.21
31 32 1.811965 TGAGTTTCCCAATCACGCATG 59.188 47.619 0.00 0.00 0.00 4.06
32 33 1.812571 GTGAGTTTCCCAATCACGCAT 59.187 47.619 0.00 0.00 34.55 4.73
33 34 1.234821 GTGAGTTTCCCAATCACGCA 58.765 50.000 0.00 0.00 34.55 5.24
36 37 1.069227 GCACGTGAGTTTCCCAATCAC 60.069 52.381 22.23 0.00 46.40 3.06
37 38 1.234821 GCACGTGAGTTTCCCAATCA 58.765 50.000 22.23 0.00 46.40 2.57
38 39 1.234821 TGCACGTGAGTTTCCCAATC 58.765 50.000 22.23 0.00 46.40 2.67
39 40 1.336755 GTTGCACGTGAGTTTCCCAAT 59.663 47.619 22.23 0.00 46.40 3.16
40 41 0.736053 GTTGCACGTGAGTTTCCCAA 59.264 50.000 22.23 9.11 46.40 4.12
41 42 0.107410 AGTTGCACGTGAGTTTCCCA 60.107 50.000 22.23 2.21 46.40 4.37
42 43 0.307760 CAGTTGCACGTGAGTTTCCC 59.692 55.000 22.23 0.00 46.40 3.97
43 44 0.317020 GCAGTTGCACGTGAGTTTCC 60.317 55.000 22.23 0.00 46.40 3.13
44 45 3.148823 GCAGTTGCACGTGAGTTTC 57.851 52.632 22.23 0.69 46.40 2.78
55 56 4.272991 TCAACCAAATCATTTTGCAGTTGC 59.727 37.500 12.05 0.00 40.72 4.17
56 57 5.559417 GCTCAACCAAATCATTTTGCAGTTG 60.559 40.000 11.23 11.23 41.43 3.16
57 58 4.512571 GCTCAACCAAATCATTTTGCAGTT 59.487 37.500 0.00 0.00 40.77 3.16
58 59 4.060205 GCTCAACCAAATCATTTTGCAGT 58.940 39.130 0.00 0.00 40.77 4.40
59 60 4.059511 TGCTCAACCAAATCATTTTGCAG 58.940 39.130 0.00 0.00 40.77 4.41
60 61 4.069300 TGCTCAACCAAATCATTTTGCA 57.931 36.364 0.00 0.00 40.77 4.08
61 62 6.314400 ACATATGCTCAACCAAATCATTTTGC 59.686 34.615 1.58 0.00 40.77 3.68
62 63 7.201574 CCACATATGCTCAACCAAATCATTTTG 60.202 37.037 1.58 0.00 41.59 2.44
63 64 6.819649 CCACATATGCTCAACCAAATCATTTT 59.180 34.615 1.58 0.00 0.00 1.82
64 65 6.154877 TCCACATATGCTCAACCAAATCATTT 59.845 34.615 1.58 0.00 0.00 2.32
65 66 5.657745 TCCACATATGCTCAACCAAATCATT 59.342 36.000 1.58 0.00 0.00 2.57
66 67 5.068198 GTCCACATATGCTCAACCAAATCAT 59.932 40.000 1.58 0.00 0.00 2.45
67 68 4.398988 GTCCACATATGCTCAACCAAATCA 59.601 41.667 1.58 0.00 0.00 2.57
68 69 4.641989 AGTCCACATATGCTCAACCAAATC 59.358 41.667 1.58 0.00 0.00 2.17
69 70 4.603131 AGTCCACATATGCTCAACCAAAT 58.397 39.130 1.58 0.00 0.00 2.32
70 71 4.009675 GAGTCCACATATGCTCAACCAAA 58.990 43.478 1.58 0.00 0.00 3.28
71 72 3.008923 TGAGTCCACATATGCTCAACCAA 59.991 43.478 1.58 0.00 35.36 3.67
72 73 2.571202 TGAGTCCACATATGCTCAACCA 59.429 45.455 1.58 0.00 35.36 3.67
73 74 3.266510 TGAGTCCACATATGCTCAACC 57.733 47.619 1.58 0.00 35.36 3.77
74 75 4.194640 ACATGAGTCCACATATGCTCAAC 58.805 43.478 12.80 3.29 40.71 3.18
75 76 4.492494 ACATGAGTCCACATATGCTCAA 57.508 40.909 12.80 0.92 40.71 3.02
76 77 4.080975 TCAACATGAGTCCACATATGCTCA 60.081 41.667 11.62 11.62 41.43 4.26
77 78 4.272018 GTCAACATGAGTCCACATATGCTC 59.728 45.833 1.58 1.94 0.00 4.26
78 79 4.194640 GTCAACATGAGTCCACATATGCT 58.805 43.478 1.58 0.00 0.00 3.79
79 80 3.940852 TGTCAACATGAGTCCACATATGC 59.059 43.478 1.58 0.00 0.00 3.14
80 81 5.163723 GGTTGTCAACATGAGTCCACATATG 60.164 44.000 17.29 0.00 0.00 1.78
81 82 4.943705 GGTTGTCAACATGAGTCCACATAT 59.056 41.667 17.29 0.00 0.00 1.78
82 83 4.202409 TGGTTGTCAACATGAGTCCACATA 60.202 41.667 17.29 0.00 0.00 2.29
83 84 3.149196 GGTTGTCAACATGAGTCCACAT 58.851 45.455 17.29 0.00 0.00 3.21
84 85 2.092699 TGGTTGTCAACATGAGTCCACA 60.093 45.455 17.29 0.26 0.00 4.17
85 86 2.571212 TGGTTGTCAACATGAGTCCAC 58.429 47.619 17.29 0.00 0.00 4.02
86 87 3.289407 TTGGTTGTCAACATGAGTCCA 57.711 42.857 17.29 1.57 0.00 4.02
87 88 5.957842 TTATTGGTTGTCAACATGAGTCC 57.042 39.130 17.29 0.00 38.31 3.85
88 89 7.370383 ACATTTATTGGTTGTCAACATGAGTC 58.630 34.615 17.29 0.00 38.31 3.36
89 90 7.288810 ACATTTATTGGTTGTCAACATGAGT 57.711 32.000 17.29 2.39 38.31 3.41
90 91 9.507280 GATACATTTATTGGTTGTCAACATGAG 57.493 33.333 17.29 1.83 38.31 2.90
91 92 9.241919 AGATACATTTATTGGTTGTCAACATGA 57.758 29.630 17.29 3.06 38.31 3.07
92 93 9.859427 AAGATACATTTATTGGTTGTCAACATG 57.141 29.630 17.29 12.57 38.31 3.21
141 142 8.704234 GCCGAATACAAATAAAAATGTTTCACA 58.296 29.630 0.00 0.00 0.00 3.58
142 143 8.921670 AGCCGAATACAAATAAAAATGTTTCAC 58.078 29.630 0.00 0.00 0.00 3.18
143 144 9.482627 AAGCCGAATACAAATAAAAATGTTTCA 57.517 25.926 0.00 0.00 0.00 2.69
144 145 9.739786 CAAGCCGAATACAAATAAAAATGTTTC 57.260 29.630 0.00 0.00 0.00 2.78
145 146 9.267084 ACAAGCCGAATACAAATAAAAATGTTT 57.733 25.926 0.00 0.00 0.00 2.83
146 147 8.825667 ACAAGCCGAATACAAATAAAAATGTT 57.174 26.923 0.00 0.00 0.00 2.71
147 148 9.915629 TTACAAGCCGAATACAAATAAAAATGT 57.084 25.926 0.00 0.00 0.00 2.71
151 152 9.968870 AGTTTTACAAGCCGAATACAAATAAAA 57.031 25.926 0.00 0.00 0.00 1.52
206 207 9.269453 TGATTTGCATTCAAACATATTGTCAAA 57.731 25.926 0.00 0.00 44.11 2.69
207 208 8.828688 TGATTTGCATTCAAACATATTGTCAA 57.171 26.923 0.00 0.00 44.11 3.18
208 209 8.828688 TTGATTTGCATTCAAACATATTGTCA 57.171 26.923 9.47 0.00 44.11 3.58
209 210 9.697250 CATTGATTTGCATTCAAACATATTGTC 57.303 29.630 14.40 0.00 44.11 3.18
210 211 8.670135 CCATTGATTTGCATTCAAACATATTGT 58.330 29.630 14.40 0.00 44.11 2.71
211 212 7.642194 GCCATTGATTTGCATTCAAACATATTG 59.358 33.333 14.40 8.50 44.11 1.90
212 213 7.201750 GGCCATTGATTTGCATTCAAACATATT 60.202 33.333 14.40 0.00 44.11 1.28
213 214 6.261381 GGCCATTGATTTGCATTCAAACATAT 59.739 34.615 14.40 0.00 44.11 1.78
214 215 5.585445 GGCCATTGATTTGCATTCAAACATA 59.415 36.000 14.40 0.00 44.11 2.29
215 216 4.396790 GGCCATTGATTTGCATTCAAACAT 59.603 37.500 14.40 0.00 44.11 2.71
216 217 3.752222 GGCCATTGATTTGCATTCAAACA 59.248 39.130 14.40 0.00 44.11 2.83
217 218 3.181518 CGGCCATTGATTTGCATTCAAAC 60.182 43.478 14.40 8.62 44.11 2.93
218 219 3.001414 CGGCCATTGATTTGCATTCAAA 58.999 40.909 14.40 0.00 45.24 2.69
219 220 2.619147 CGGCCATTGATTTGCATTCAA 58.381 42.857 13.19 13.19 37.49 2.69
220 221 1.134759 CCGGCCATTGATTTGCATTCA 60.135 47.619 2.24 0.00 0.00 2.57
221 222 1.574134 CCGGCCATTGATTTGCATTC 58.426 50.000 2.24 0.00 0.00 2.67
222 223 0.462403 GCCGGCCATTGATTTGCATT 60.462 50.000 18.11 0.00 0.00 3.56
223 224 1.144496 GCCGGCCATTGATTTGCAT 59.856 52.632 18.11 0.00 0.00 3.96
224 225 2.281295 TGCCGGCCATTGATTTGCA 61.281 52.632 26.77 0.00 0.00 4.08
225 226 1.810853 GTGCCGGCCATTGATTTGC 60.811 57.895 26.77 0.00 0.00 3.68
226 227 0.176219 ATGTGCCGGCCATTGATTTG 59.824 50.000 26.77 0.00 0.00 2.32
227 228 1.774110 TATGTGCCGGCCATTGATTT 58.226 45.000 27.94 12.02 0.00 2.17
228 229 1.614903 CATATGTGCCGGCCATTGATT 59.385 47.619 27.94 12.61 0.00 2.57
229 230 1.250328 CATATGTGCCGGCCATTGAT 58.750 50.000 27.94 17.29 0.00 2.57
230 231 0.822944 CCATATGTGCCGGCCATTGA 60.823 55.000 27.94 16.06 0.00 2.57
231 232 0.822944 TCCATATGTGCCGGCCATTG 60.823 55.000 27.94 23.38 0.00 2.82
232 233 0.112995 ATCCATATGTGCCGGCCATT 59.887 50.000 27.94 14.85 0.00 3.16
233 234 0.112995 AATCCATATGTGCCGGCCAT 59.887 50.000 26.77 26.66 0.00 4.40
234 235 0.822944 CAATCCATATGTGCCGGCCA 60.823 55.000 26.77 21.79 0.00 5.36
235 236 1.526575 CCAATCCATATGTGCCGGCC 61.527 60.000 26.77 16.24 0.00 6.13
236 237 1.959085 CCAATCCATATGTGCCGGC 59.041 57.895 22.73 22.73 0.00 6.13
237 238 1.855213 CGCCAATCCATATGTGCCGG 61.855 60.000 0.00 0.00 0.00 6.13
238 239 1.575922 CGCCAATCCATATGTGCCG 59.424 57.895 1.24 0.00 0.00 5.69
239 240 1.286880 GCGCCAATCCATATGTGCC 59.713 57.895 0.00 0.00 0.00 5.01
240 241 1.081906 CGCGCCAATCCATATGTGC 60.082 57.895 0.00 0.00 0.00 4.57
241 242 0.662619 AACGCGCCAATCCATATGTG 59.337 50.000 5.73 0.00 0.00 3.21
242 243 0.944386 GAACGCGCCAATCCATATGT 59.056 50.000 5.73 0.00 0.00 2.29
243 244 0.110688 CGAACGCGCCAATCCATATG 60.111 55.000 5.73 0.00 0.00 1.78
244 245 0.249699 TCGAACGCGCCAATCCATAT 60.250 50.000 5.73 0.00 37.46 1.78
245 246 1.142097 TCGAACGCGCCAATCCATA 59.858 52.632 5.73 0.00 37.46 2.74
246 247 2.125310 TCGAACGCGCCAATCCAT 60.125 55.556 5.73 0.00 37.46 3.41
247 248 3.115892 GTCGAACGCGCCAATCCA 61.116 61.111 5.73 0.00 37.46 3.41
248 249 4.204891 CGTCGAACGCGCCAATCC 62.205 66.667 5.73 0.00 33.65 3.01
262 263 2.679132 ATATGGGTCGACAGCGCGTC 62.679 60.000 18.91 18.30 41.62 5.19
263 264 2.679132 GATATGGGTCGACAGCGCGT 62.679 60.000 18.91 2.53 37.46 6.01
264 265 2.016704 GATATGGGTCGACAGCGCG 61.017 63.158 18.91 0.00 37.46 6.86
265 266 0.529773 TTGATATGGGTCGACAGCGC 60.530 55.000 18.91 0.00 37.46 5.92
266 267 1.934589 TTTGATATGGGTCGACAGCG 58.065 50.000 18.91 0.00 39.35 5.18
267 268 4.900635 ATTTTTGATATGGGTCGACAGC 57.099 40.909 18.91 0.00 0.00 4.40
268 269 5.470098 CCCTATTTTTGATATGGGTCGACAG 59.530 44.000 18.91 0.23 0.00 3.51
269 270 5.373222 CCCTATTTTTGATATGGGTCGACA 58.627 41.667 18.91 0.00 0.00 4.35
270 271 4.215613 GCCCTATTTTTGATATGGGTCGAC 59.784 45.833 7.13 7.13 37.09 4.20
271 272 4.394729 GCCCTATTTTTGATATGGGTCGA 58.605 43.478 0.00 0.00 37.09 4.20
272 273 3.188460 CGCCCTATTTTTGATATGGGTCG 59.812 47.826 0.00 0.00 37.09 4.79
273 274 3.506067 CCGCCCTATTTTTGATATGGGTC 59.494 47.826 0.00 0.00 37.09 4.46
274 275 3.139397 TCCGCCCTATTTTTGATATGGGT 59.861 43.478 0.00 0.00 37.09 4.51
275 276 3.506067 GTCCGCCCTATTTTTGATATGGG 59.494 47.826 0.00 0.00 37.76 4.00
276 277 3.188460 CGTCCGCCCTATTTTTGATATGG 59.812 47.826 0.00 0.00 0.00 2.74
277 278 3.188460 CCGTCCGCCCTATTTTTGATATG 59.812 47.826 0.00 0.00 0.00 1.78
278 279 3.408634 CCGTCCGCCCTATTTTTGATAT 58.591 45.455 0.00 0.00 0.00 1.63
279 280 2.841215 CCGTCCGCCCTATTTTTGATA 58.159 47.619 0.00 0.00 0.00 2.15
280 281 1.675552 CCGTCCGCCCTATTTTTGAT 58.324 50.000 0.00 0.00 0.00 2.57
281 282 1.027792 GCCGTCCGCCCTATTTTTGA 61.028 55.000 0.00 0.00 0.00 2.69
282 283 1.431845 GCCGTCCGCCCTATTTTTG 59.568 57.895 0.00 0.00 0.00 2.44
283 284 3.914094 GCCGTCCGCCCTATTTTT 58.086 55.556 0.00 0.00 0.00 1.94
316 317 0.515564 CGGCAATCTCGTCCGTTTTT 59.484 50.000 0.00 0.00 38.47 1.94
317 318 2.159181 CGGCAATCTCGTCCGTTTT 58.841 52.632 0.00 0.00 38.47 2.43
318 319 3.870606 CGGCAATCTCGTCCGTTT 58.129 55.556 0.00 0.00 38.47 3.60
324 325 1.005394 AAACGGACGGCAATCTCGT 60.005 52.632 0.00 0.00 44.03 4.18
325 326 1.419922 CAAACGGACGGCAATCTCG 59.580 57.895 0.00 0.00 0.00 4.04
326 327 1.644786 CCCAAACGGACGGCAATCTC 61.645 60.000 0.00 0.00 0.00 2.75
327 328 1.674322 CCCAAACGGACGGCAATCT 60.674 57.895 0.00 0.00 0.00 2.40
328 329 1.918868 GACCCAAACGGACGGCAATC 61.919 60.000 0.00 0.00 34.64 2.67
329 330 1.969589 GACCCAAACGGACGGCAAT 60.970 57.895 0.00 0.00 34.64 3.56
330 331 2.592287 GACCCAAACGGACGGCAA 60.592 61.111 0.00 0.00 34.64 4.52
331 332 4.973055 CGACCCAAACGGACGGCA 62.973 66.667 0.00 0.00 44.72 5.69
345 346 2.689983 AGATCAATTTCAATGGGGCGAC 59.310 45.455 0.00 0.00 0.00 5.19
346 347 2.689471 CAGATCAATTTCAATGGGGCGA 59.311 45.455 0.00 0.00 0.00 5.54
347 348 2.689471 TCAGATCAATTTCAATGGGGCG 59.311 45.455 0.00 0.00 0.00 6.13
348 349 4.342951 TCATCAGATCAATTTCAATGGGGC 59.657 41.667 0.00 0.00 0.00 5.80
349 350 6.474140 TTCATCAGATCAATTTCAATGGGG 57.526 37.500 0.00 0.00 0.00 4.96
350 351 8.780846 TTTTTCATCAGATCAATTTCAATGGG 57.219 30.769 0.00 0.00 0.00 4.00
374 375 5.863935 GCCTCTTGCACGATTTTCTATTTTT 59.136 36.000 0.00 0.00 40.77 1.94
394 395 3.991536 GAGCCGACCACTTCGCCTC 62.992 68.421 0.00 0.00 44.21 4.70
572 582 0.388778 TTTATGCGGCGAGACGAACA 60.389 50.000 12.98 0.00 35.47 3.18
573 583 0.024619 GTTTATGCGGCGAGACGAAC 59.975 55.000 12.98 4.42 35.47 3.95
574 584 0.108992 AGTTTATGCGGCGAGACGAA 60.109 50.000 12.98 0.00 35.47 3.85
575 585 0.524816 GAGTTTATGCGGCGAGACGA 60.525 55.000 12.98 0.00 35.47 4.20
622 643 1.377333 GGCTGAAACCGGGAGAAGG 60.377 63.158 6.32 0.00 0.00 3.46
632 653 2.383527 CGTGAGGCTCGGCTGAAAC 61.384 63.158 10.42 0.00 0.00 2.78
633 654 2.048222 CGTGAGGCTCGGCTGAAA 60.048 61.111 10.42 0.00 0.00 2.69
675 709 1.918957 AGCAGGGATGCTAGGTTTTCT 59.081 47.619 0.00 0.00 44.28 2.52
676 710 2.424956 CAAGCAGGGATGCTAGGTTTTC 59.575 50.000 2.72 0.00 45.54 2.29
677 711 2.450476 CAAGCAGGGATGCTAGGTTTT 58.550 47.619 2.72 0.00 45.54 2.43
689 723 0.548031 TCCTGGATTAGCAAGCAGGG 59.452 55.000 0.00 0.00 0.00 4.45
787 828 7.559486 AGGTGAAAAGCAAGAAGAAGAAAAAT 58.441 30.769 0.00 0.00 0.00 1.82
792 833 4.580580 GGAAGGTGAAAAGCAAGAAGAAGA 59.419 41.667 0.00 0.00 0.00 2.87
793 834 4.339247 TGGAAGGTGAAAAGCAAGAAGAAG 59.661 41.667 0.00 0.00 0.00 2.85
794 835 4.277476 TGGAAGGTGAAAAGCAAGAAGAA 58.723 39.130 0.00 0.00 0.00 2.52
795 836 3.897239 TGGAAGGTGAAAAGCAAGAAGA 58.103 40.909 0.00 0.00 0.00 2.87
796 837 4.861102 ATGGAAGGTGAAAAGCAAGAAG 57.139 40.909 0.00 0.00 0.00 2.85
799 840 4.060205 CCAAATGGAAGGTGAAAAGCAAG 58.940 43.478 0.00 0.00 37.39 4.01
803 844 8.558700 CATTTTAACCAAATGGAAGGTGAAAAG 58.441 33.333 6.42 2.80 46.28 2.27
816 857 5.499313 CAATCCAGGGCATTTTAACCAAAT 58.501 37.500 0.00 0.00 35.24 2.32
821 862 3.608316 TGCAATCCAGGGCATTTTAAC 57.392 42.857 0.00 0.00 34.58 2.01
829 870 0.462789 CCTCAAATGCAATCCAGGGC 59.537 55.000 0.00 0.00 0.00 5.19
830 871 0.462789 GCCTCAAATGCAATCCAGGG 59.537 55.000 0.00 0.00 0.00 4.45
831 872 0.462789 GGCCTCAAATGCAATCCAGG 59.537 55.000 0.00 0.00 0.00 4.45
832 873 0.462789 GGGCCTCAAATGCAATCCAG 59.537 55.000 0.84 0.00 0.00 3.86
833 874 1.321805 CGGGCCTCAAATGCAATCCA 61.322 55.000 0.84 0.00 0.00 3.41
834 875 1.322538 ACGGGCCTCAAATGCAATCC 61.323 55.000 0.84 0.00 0.00 3.01
835 876 0.179129 CACGGGCCTCAAATGCAATC 60.179 55.000 0.84 0.00 0.00 2.67
836 877 0.611618 TCACGGGCCTCAAATGCAAT 60.612 50.000 0.84 0.00 0.00 3.56
837 878 0.825425 TTCACGGGCCTCAAATGCAA 60.825 50.000 0.84 0.00 0.00 4.08
838 879 0.611618 ATTCACGGGCCTCAAATGCA 60.612 50.000 0.84 0.00 0.00 3.96
839 880 0.179129 CATTCACGGGCCTCAAATGC 60.179 55.000 0.84 0.00 0.00 3.56
840 881 1.176527 ACATTCACGGGCCTCAAATG 58.823 50.000 15.72 15.72 34.34 2.32
843 884 2.799126 ATAACATTCACGGGCCTCAA 57.201 45.000 0.84 0.00 0.00 3.02
844 885 2.799126 AATAACATTCACGGGCCTCA 57.201 45.000 0.84 0.00 0.00 3.86
845 886 2.876550 GGTAATAACATTCACGGGCCTC 59.123 50.000 0.84 0.00 0.00 4.70
846 887 2.240160 TGGTAATAACATTCACGGGCCT 59.760 45.455 0.84 0.00 0.00 5.19
847 888 2.616842 CTGGTAATAACATTCACGGGCC 59.383 50.000 0.00 0.00 0.00 5.80
848 889 3.275999 ACTGGTAATAACATTCACGGGC 58.724 45.455 0.00 0.00 0.00 6.13
849 890 4.570772 CAGACTGGTAATAACATTCACGGG 59.429 45.833 0.00 0.00 0.00 5.28
850 891 5.175859 ACAGACTGGTAATAACATTCACGG 58.824 41.667 7.51 0.00 0.00 4.94
851 892 6.721571 AACAGACTGGTAATAACATTCACG 57.278 37.500 7.51 0.00 0.00 4.35
852 893 8.015658 GTCAAACAGACTGGTAATAACATTCAC 58.984 37.037 7.51 0.00 44.09 3.18
853 894 8.094798 GTCAAACAGACTGGTAATAACATTCA 57.905 34.615 7.51 0.00 44.09 2.57
878 939 2.386661 AACATGCCTGTTACCTCGAG 57.613 50.000 5.13 5.13 43.77 4.04
885 946 7.387397 GGAAAATGAAATGAAACATGCCTGTTA 59.613 33.333 7.84 0.00 44.83 2.41
889 950 6.117975 AGGAAAATGAAATGAAACATGCCT 57.882 33.333 0.00 0.00 0.00 4.75
890 951 6.806388 AAGGAAAATGAAATGAAACATGCC 57.194 33.333 0.00 0.00 0.00 4.40
895 956 9.584839 CGAATGAAAAGGAAAATGAAATGAAAC 57.415 29.630 0.00 0.00 0.00 2.78
897 958 7.387397 CCCGAATGAAAAGGAAAATGAAATGAA 59.613 33.333 0.00 0.00 0.00 2.57
903 964 4.156477 ACCCCGAATGAAAAGGAAAATGA 58.844 39.130 0.00 0.00 0.00 2.57
905 966 6.673839 TTAACCCCGAATGAAAAGGAAAAT 57.326 33.333 0.00 0.00 0.00 1.82
906 967 6.673839 ATTAACCCCGAATGAAAAGGAAAA 57.326 33.333 0.00 0.00 0.00 2.29
907 968 6.673839 AATTAACCCCGAATGAAAAGGAAA 57.326 33.333 0.00 0.00 0.00 3.13
910 971 5.449451 CGGTAATTAACCCCGAATGAAAAGG 60.449 44.000 7.10 0.00 46.62 3.11
911 972 5.575019 CGGTAATTAACCCCGAATGAAAAG 58.425 41.667 7.10 0.00 46.62 2.27
912 973 4.142425 GCGGTAATTAACCCCGAATGAAAA 60.142 41.667 15.14 0.00 46.62 2.29
913 974 3.377798 GCGGTAATTAACCCCGAATGAAA 59.622 43.478 15.14 0.00 46.62 2.69
916 977 2.289547 CAGCGGTAATTAACCCCGAATG 59.710 50.000 15.14 9.58 46.62 2.67
917 978 2.171027 TCAGCGGTAATTAACCCCGAAT 59.829 45.455 15.14 2.36 46.62 3.34
918 979 1.554160 TCAGCGGTAATTAACCCCGAA 59.446 47.619 15.14 0.00 46.62 4.30
921 982 1.607148 GCATCAGCGGTAATTAACCCC 59.393 52.381 0.00 0.00 46.62 4.95
924 985 2.943033 ACAGGCATCAGCGGTAATTAAC 59.057 45.455 0.00 0.00 43.41 2.01
925 986 2.942376 CACAGGCATCAGCGGTAATTAA 59.058 45.455 0.00 0.00 43.41 1.40
926 987 2.169561 TCACAGGCATCAGCGGTAATTA 59.830 45.455 0.00 0.00 43.41 1.40
927 988 1.065491 TCACAGGCATCAGCGGTAATT 60.065 47.619 0.00 0.00 43.41 1.40
928 989 0.541392 TCACAGGCATCAGCGGTAAT 59.459 50.000 0.00 0.00 43.41 1.89
930 991 1.408969 TATCACAGGCATCAGCGGTA 58.591 50.000 0.00 0.00 43.41 4.02
932 993 1.154197 CATATCACAGGCATCAGCGG 58.846 55.000 0.00 0.00 43.41 5.52
933 994 1.529865 CACATATCACAGGCATCAGCG 59.470 52.381 0.00 0.00 43.41 5.18
934 995 1.266175 GCACATATCACAGGCATCAGC 59.734 52.381 0.00 0.00 41.10 4.26
935 996 1.529865 CGCACATATCACAGGCATCAG 59.470 52.381 0.00 0.00 0.00 2.90
936 997 1.138661 TCGCACATATCACAGGCATCA 59.861 47.619 0.00 0.00 0.00 3.07
937 998 1.869774 TCGCACATATCACAGGCATC 58.130 50.000 0.00 0.00 0.00 3.91
948 1009 7.335673 TGAAACTTCCTGAAATAATCGCACATA 59.664 33.333 0.00 0.00 0.00 2.29
958 1019 7.279615 TGAGTTCACTGAAACTTCCTGAAATA 58.720 34.615 0.00 0.00 39.55 1.40
960 1021 5.496556 TGAGTTCACTGAAACTTCCTGAAA 58.503 37.500 0.00 0.00 39.55 2.69
969 1030 6.159988 ACTGTATAGCTGAGTTCACTGAAAC 58.840 40.000 0.00 0.00 0.00 2.78
982 1043 5.469084 TCCTCATGTACGTACTGTATAGCTG 59.531 44.000 25.12 10.29 35.02 4.24
983 1044 5.618236 TCCTCATGTACGTACTGTATAGCT 58.382 41.667 25.12 0.00 35.02 3.32
984 1045 5.699915 TCTCCTCATGTACGTACTGTATAGC 59.300 44.000 25.12 0.00 35.02 2.97
986 1047 7.174426 CCATTCTCCTCATGTACGTACTGTATA 59.826 40.741 25.12 6.22 35.02 1.47
989 1050 4.098044 CCATTCTCCTCATGTACGTACTGT 59.902 45.833 25.12 12.12 0.00 3.55
990 1051 4.338400 TCCATTCTCCTCATGTACGTACTG 59.662 45.833 25.12 19.39 0.00 2.74
991 1052 4.533815 TCCATTCTCCTCATGTACGTACT 58.466 43.478 25.12 9.27 0.00 2.73
992 1053 4.913335 TCCATTCTCCTCATGTACGTAC 57.087 45.455 18.90 18.90 0.00 3.67
993 1054 4.893524 ACATCCATTCTCCTCATGTACGTA 59.106 41.667 0.00 0.00 0.00 3.57
994 1055 3.706594 ACATCCATTCTCCTCATGTACGT 59.293 43.478 0.00 0.00 0.00 3.57
995 1056 4.327982 ACATCCATTCTCCTCATGTACG 57.672 45.455 0.00 0.00 0.00 3.67
996 1057 5.220931 GCAAACATCCATTCTCCTCATGTAC 60.221 44.000 0.00 0.00 0.00 2.90
1003 1064 3.087031 CACAGCAAACATCCATTCTCCT 58.913 45.455 0.00 0.00 0.00 3.69
1156 1221 3.081804 GTTGTCCACATTAACCCTGGAG 58.918 50.000 0.00 0.00 34.65 3.86
1158 1223 1.810151 CGTTGTCCACATTAACCCTGG 59.190 52.381 0.00 0.00 0.00 4.45
1199 1264 9.846248 AATAACTCGAGTACTTACGTTAACAAT 57.154 29.630 20.39 0.00 0.00 2.71
1214 1279 1.276622 ACCCAGCCAATAACTCGAGT 58.723 50.000 13.58 13.58 0.00 4.18
1238 1303 6.114767 CCATTAATTCCCCTCCAAACAATTG 58.885 40.000 3.24 3.24 36.25 2.32
1239 1304 5.790096 ACCATTAATTCCCCTCCAAACAATT 59.210 36.000 0.00 0.00 0.00 2.32
1240 1305 5.349690 ACCATTAATTCCCCTCCAAACAAT 58.650 37.500 0.00 0.00 0.00 2.71
1248 1313 8.712103 AGTACTAGTTTACCATTAATTCCCCTC 58.288 37.037 0.00 0.00 0.00 4.30
1293 1365 7.788026 TGGTCATTTCGACTGTTTACCTATAT 58.212 34.615 0.00 0.00 44.70 0.86
1294 1366 7.172868 TGGTCATTTCGACTGTTTACCTATA 57.827 36.000 0.00 0.00 44.70 1.31
1301 1373 3.502211 GGTCATGGTCATTTCGACTGTTT 59.498 43.478 0.00 0.00 44.70 2.83
1517 1589 5.068234 TCATTTAGAAGGACTACCACACG 57.932 43.478 0.00 0.00 38.94 4.49
1518 1590 7.783042 AGTATCATTTAGAAGGACTACCACAC 58.217 38.462 0.00 0.00 38.94 3.82
1535 1607 2.932614 GTCGAGCAGTGCAAGTATCATT 59.067 45.455 19.20 0.00 0.00 2.57
1536 1608 2.094026 TGTCGAGCAGTGCAAGTATCAT 60.094 45.455 19.20 0.00 0.00 2.45
1537 1609 1.272212 TGTCGAGCAGTGCAAGTATCA 59.728 47.619 19.20 5.81 0.00 2.15
1558 1663 2.680841 TCCTCTGAAAACACGTTGGTTG 59.319 45.455 0.00 0.00 0.00 3.77
1559 1664 2.993937 TCCTCTGAAAACACGTTGGTT 58.006 42.857 0.00 0.00 0.00 3.67
1560 1665 2.702592 TCCTCTGAAAACACGTTGGT 57.297 45.000 0.00 0.00 0.00 3.67
1561 1666 5.238650 ACTTTATCCTCTGAAAACACGTTGG 59.761 40.000 0.00 0.00 0.00 3.77
1614 1722 3.472237 ATGGGGCACATCCAAACAA 57.528 47.368 0.00 0.00 37.87 2.83
1632 1740 3.326006 AGCAACTCAGAGAATCAACAGGA 59.674 43.478 3.79 0.00 37.82 3.86
1719 1827 6.703319 TCCTGAACGACCATATTTTTGACTA 58.297 36.000 0.00 0.00 0.00 2.59
1731 1839 0.109532 TGCCAATTCCTGAACGACCA 59.890 50.000 0.00 0.00 0.00 4.02
1738 1846 2.305635 TCAAGCTACTGCCAATTCCTGA 59.694 45.455 0.00 0.00 40.80 3.86
1757 1865 1.473258 AAACAAAGCCTGTGCACTCA 58.527 45.000 19.41 0.00 38.67 3.41
1785 1893 1.483827 CATGCAGAAGGTCTAGAGGCA 59.516 52.381 0.00 0.00 0.00 4.75
1796 1904 3.741856 CCTTCGATGAGATCATGCAGAAG 59.258 47.826 16.99 16.99 37.95 2.85
1845 1953 6.946340 TGACCCATATTATACATGTAGGCAG 58.054 40.000 11.91 0.00 0.00 4.85
2103 2211 6.282199 TGTAGTTAGATGGGTGAAGAACTC 57.718 41.667 0.00 0.00 0.00 3.01
2253 2364 2.777692 ACCAGTTCAGTTTTGAGGGAGA 59.222 45.455 0.00 0.00 34.15 3.71
2254 2365 3.214696 ACCAGTTCAGTTTTGAGGGAG 57.785 47.619 0.00 0.00 34.15 4.30
2255 2366 3.287222 CAACCAGTTCAGTTTTGAGGGA 58.713 45.455 0.00 0.00 34.15 4.20
2642 2756 2.381911 GCCCATCTTCATCCATTGTGT 58.618 47.619 0.00 0.00 0.00 3.72
2643 2757 1.335810 CGCCCATCTTCATCCATTGTG 59.664 52.381 0.00 0.00 0.00 3.33
2940 3057 3.084039 TGAGGCATGGAAGACATTGAAC 58.916 45.455 0.00 0.00 37.84 3.18
2967 3084 3.373565 GCAAAAGGCCCACGGGAG 61.374 66.667 6.21 0.00 37.50 4.30
3259 3397 5.009310 GGATGCAATTCAACTCATGATGCTA 59.991 40.000 14.40 4.12 42.18 3.49
3289 3427 9.823647 CACAGAGTAAATCTTATCCATGTTACT 57.176 33.333 1.90 1.90 35.47 2.24
3317 3456 7.830940 AAACAACAATGCACATTATACATGG 57.169 32.000 0.00 0.00 0.00 3.66
3367 3506 2.563702 TGTTACGTTGGGTTCAGGTTC 58.436 47.619 0.00 0.00 0.00 3.62
3413 3552 6.370593 TCGAAACTGCACTGATTTTAATGTC 58.629 36.000 0.00 0.00 0.00 3.06
3414 3553 6.312399 TCGAAACTGCACTGATTTTAATGT 57.688 33.333 0.00 0.00 0.00 2.71
3415 3554 7.660059 CAATCGAAACTGCACTGATTTTAATG 58.340 34.615 0.00 0.00 0.00 1.90
3430 3571 1.337703 TGCTTTGCTGCAATCGAAACT 59.662 42.857 16.77 0.00 40.29 2.66
3490 3631 7.041098 GCAGAGGAATTTCACAGAAGTTTAAGA 60.041 37.037 0.00 0.00 0.00 2.10
3491 3632 7.080724 GCAGAGGAATTTCACAGAAGTTTAAG 58.919 38.462 0.00 0.00 0.00 1.85
3494 3635 4.023707 CGCAGAGGAATTTCACAGAAGTTT 60.024 41.667 0.00 0.00 0.00 2.66
3517 3658 4.525912 AATGTCAGAATCTTTGTTGGGC 57.474 40.909 0.00 0.00 0.00 5.36
3519 3660 7.775397 AACAAAATGTCAGAATCTTTGTTGG 57.225 32.000 13.26 0.00 44.36 3.77
3525 3666 6.636850 GCAACGTAACAAAATGTCAGAATCTT 59.363 34.615 0.00 0.00 0.00 2.40
3527 3668 5.058008 CGCAACGTAACAAAATGTCAGAATC 59.942 40.000 0.00 0.00 0.00 2.52
3566 3707 4.433805 CGGTAAATGCAGTAACGTCAGAAC 60.434 45.833 9.00 0.00 0.00 3.01
3570 3711 3.247442 CTCGGTAAATGCAGTAACGTCA 58.753 45.455 15.05 0.00 33.37 4.35
3577 3718 0.981183 TGGGACTCGGTAAATGCAGT 59.019 50.000 0.00 0.00 0.00 4.40
3712 3861 1.227089 ATCGCGATGTCAGCCTGTC 60.227 57.895 23.04 0.00 0.00 3.51
3719 3868 1.521457 GCCTTCCATCGCGATGTCA 60.521 57.895 38.53 26.08 37.11 3.58
3728 3877 4.012374 TCTTCATCTTGTTGCCTTCCATC 58.988 43.478 0.00 0.00 0.00 3.51
3737 3886 5.409643 AGAACGTGTTCTTCATCTTGTTG 57.590 39.130 9.40 0.00 46.95 3.33
3738 3887 5.175126 CGTAGAACGTGTTCTTCATCTTGTT 59.825 40.000 19.36 0.00 46.95 2.83
3755 3904 1.661112 GAGATGCCTTGCACGTAGAAC 59.339 52.381 0.00 0.00 43.04 3.01
3824 3973 1.695597 CTGGAAGGGCAGGGGATCT 60.696 63.158 0.00 0.00 0.00 2.75
3896 4045 3.579709 GATGCAGAAGACGTTTCTCTCA 58.420 45.455 9.20 10.21 0.00 3.27
3907 4056 0.034767 CAGGCCAAGGATGCAGAAGA 60.035 55.000 5.01 0.00 0.00 2.87
3988 4139 6.735556 ACCCTAGCCTGTAAAGTAGTACTTA 58.264 40.000 15.84 0.09 37.47 2.24
3991 4142 5.929058 AACCCTAGCCTGTAAAGTAGTAC 57.071 43.478 0.00 0.00 0.00 2.73
4085 4242 6.478512 ACCAATTGTAAAACACTGGACAAT 57.521 33.333 4.43 0.00 42.76 2.71
4096 4253 6.262496 TGTCATAACCACGACCAATTGTAAAA 59.738 34.615 4.43 0.00 0.00 1.52
4107 4264 2.073816 CCCAACTGTCATAACCACGAC 58.926 52.381 0.00 0.00 0.00 4.34
4113 4270 1.029947 CGGGCCCCAACTGTCATAAC 61.030 60.000 18.66 0.00 0.00 1.89
4143 4300 6.949578 AACAAACTGTCAAAACAATCAGTG 57.050 33.333 0.00 0.00 40.36 3.66
4159 4316 8.303876 AGTTGTCATTTAACTGTCAAACAAACT 58.696 29.630 6.97 0.00 37.03 2.66
4171 4328 2.525368 GGCCCCAGTTGTCATTTAACT 58.475 47.619 0.00 0.00 38.84 2.24
4224 4382 4.388577 AGTTTAAAGGGACCTGATTGCT 57.611 40.909 0.00 0.00 0.00 3.91
4225 4383 5.468540 AAAGTTTAAAGGGACCTGATTGC 57.531 39.130 0.00 0.00 0.00 3.56
4226 4384 9.825109 TTTTAAAAGTTTAAAGGGACCTGATTG 57.175 29.630 8.53 0.00 41.85 2.67
4228 4386 9.826574 GTTTTTAAAAGTTTAAAGGGACCTGAT 57.173 29.630 8.53 0.00 41.85 2.90
4229 4387 8.813951 TGTTTTTAAAAGTTTAAAGGGACCTGA 58.186 29.630 8.53 0.00 41.85 3.86
4230 4388 8.875803 GTGTTTTTAAAAGTTTAAAGGGACCTG 58.124 33.333 8.53 0.00 41.85 4.00
4231 4389 8.595421 TGTGTTTTTAAAAGTTTAAAGGGACCT 58.405 29.630 8.53 0.00 41.85 3.85
4232 4390 8.774890 TGTGTTTTTAAAAGTTTAAAGGGACC 57.225 30.769 8.53 0.00 41.85 4.46
4344 4507 2.257409 GAATGGAGGGAGCTCCGCAA 62.257 60.000 26.36 14.84 46.18 4.85
4776 5295 1.287739 CTCTCCCTTCTCCTCCTGACT 59.712 57.143 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.