Multiple sequence alignment - TraesCS2D01G090700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G090700 chr2D 100.000 3278 0 0 1 3278 42883737 42887014 0.000000e+00 6054
1 TraesCS2D01G090700 chr2D 93.862 2737 122 27 562 3278 79880985 79878275 0.000000e+00 4082
2 TraesCS2D01G090700 chr2B 95.072 2354 92 15 562 2908 131293226 131290890 0.000000e+00 3683
3 TraesCS2D01G090700 chr2B 94.324 370 10 3 2909 3278 131290788 131290430 1.030000e-154 556
4 TraesCS2D01G090700 chr2A 91.975 1458 83 12 562 2013 80482394 80480965 0.000000e+00 2013
5 TraesCS2D01G090700 chr2A 92.453 1272 56 21 2013 3278 80480843 80479606 0.000000e+00 1781
6 TraesCS2D01G090700 chr3A 86.780 295 15 6 562 856 592136290 592136020 1.140000e-79 307
7 TraesCS2D01G090700 chr3A 84.797 296 20 4 562 856 592200992 592200721 1.160000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G090700 chr2D 42883737 42887014 3277 False 6054.0 6054 100.000 1 3278 1 chr2D.!!$F1 3277
1 TraesCS2D01G090700 chr2D 79878275 79880985 2710 True 4082.0 4082 93.862 562 3278 1 chr2D.!!$R1 2716
2 TraesCS2D01G090700 chr2B 131290430 131293226 2796 True 2119.5 3683 94.698 562 3278 2 chr2B.!!$R1 2716
3 TraesCS2D01G090700 chr2A 80479606 80482394 2788 True 1897.0 2013 92.214 562 3278 2 chr2A.!!$R1 2716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.025770 CGTGCGTTTGTTATAGCCCG 59.974 55.0 0.0 0.0 0.0 6.13 F
526 527 0.040425 GGTTGTGACGTTGATGCCAC 60.040 55.0 0.0 0.0 0.0 5.01 F
1162 1192 0.178068 TCCGGGAAGTGCAATCTAGC 59.822 55.0 0.0 0.0 0.0 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 1456 0.108804 AAGACCGCGATGTTGACGAT 60.109 50.000 8.23 0.00 0.00 3.73 R
1425 1457 1.006825 CAAGACCGCGATGTTGACGA 61.007 55.000 3.85 0.00 0.00 4.20 R
2848 3012 1.069296 CAAACTCGCATGCCGAAAAGA 60.069 47.619 13.15 0.94 46.81 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.733960 CCTCGTGCGTGGTCTCGA 61.734 66.667 4.71 0.00 0.00 4.04
20 21 2.254350 CTCGTGCGTGGTCTCGAA 59.746 61.111 0.00 0.00 32.12 3.71
21 22 2.050714 TCGTGCGTGGTCTCGAAC 60.051 61.111 0.00 0.00 36.17 3.95
23 24 2.354305 GTGCGTGGTCTCGAACGT 60.354 61.111 8.94 0.00 41.76 3.99
24 25 2.050714 TGCGTGGTCTCGAACGTC 60.051 61.111 8.94 2.90 41.76 4.34
25 26 2.804090 GCGTGGTCTCGAACGTCC 60.804 66.667 8.94 0.00 41.76 4.79
26 27 2.126580 CGTGGTCTCGAACGTCCC 60.127 66.667 0.00 0.00 35.13 4.46
27 28 2.126580 GTGGTCTCGAACGTCCCG 60.127 66.667 4.20 4.20 0.00 5.14
28 29 2.281692 TGGTCTCGAACGTCCCGA 60.282 61.111 11.59 11.59 34.61 5.14
33 34 3.425713 TCGAACGTCCCGAGACCG 61.426 66.667 8.63 0.00 40.12 4.79
34 35 3.425713 CGAACGTCCCGAGACCGA 61.426 66.667 4.54 0.00 40.12 4.69
35 36 2.484203 GAACGTCCCGAGACCGAG 59.516 66.667 0.00 0.00 40.12 4.63
36 37 2.033141 AACGTCCCGAGACCGAGA 59.967 61.111 0.00 0.00 40.12 4.04
37 38 2.250841 GAACGTCCCGAGACCGAGAC 62.251 65.000 0.00 0.00 40.12 3.36
39 40 4.176851 GTCCCGAGACCGAGACGC 62.177 72.222 0.00 0.00 34.03 5.19
46 47 4.796231 GACCGAGACGCGCACCAT 62.796 66.667 5.73 0.00 39.11 3.55
47 48 4.796231 ACCGAGACGCGCACCATC 62.796 66.667 5.73 0.00 39.11 3.51
50 51 4.492160 GAGACGCGCACCATCGGA 62.492 66.667 5.73 0.00 0.00 4.55
51 52 4.498520 AGACGCGCACCATCGGAG 62.499 66.667 5.73 0.00 0.00 4.63
55 56 4.819761 GCGCACCATCGGAGCTGA 62.820 66.667 0.30 0.00 37.16 4.26
56 57 2.107750 CGCACCATCGGAGCTGAT 59.892 61.111 0.00 0.00 37.16 2.90
57 58 1.953138 CGCACCATCGGAGCTGATC 60.953 63.158 0.00 0.00 37.16 2.92
58 59 1.445095 GCACCATCGGAGCTGATCT 59.555 57.895 0.00 0.00 36.40 2.75
59 60 0.599728 GCACCATCGGAGCTGATCTC 60.600 60.000 0.00 0.00 41.15 2.75
66 67 4.933483 GAGCTGATCTCCGCGTAG 57.067 61.111 4.92 0.00 35.77 3.51
67 68 2.322212 GAGCTGATCTCCGCGTAGA 58.678 57.895 3.12 3.12 35.77 2.59
68 69 0.663688 GAGCTGATCTCCGCGTAGAA 59.336 55.000 5.20 0.00 35.77 2.10
69 70 0.382515 AGCTGATCTCCGCGTAGAAC 59.617 55.000 5.20 3.38 0.00 3.01
70 71 0.930742 GCTGATCTCCGCGTAGAACG 60.931 60.000 5.20 1.28 45.88 3.95
79 80 3.374330 CGTAGAACGCGCTGGAAG 58.626 61.111 5.73 0.00 33.65 3.46
80 81 2.158959 CGTAGAACGCGCTGGAAGG 61.159 63.158 5.73 0.00 33.65 3.46
105 106 4.824166 CGGACGACGTGGTAGCCG 62.824 72.222 14.62 14.62 37.93 5.52
106 107 4.487412 GGACGACGTGGTAGCCGG 62.487 72.222 4.58 0.00 0.00 6.13
107 108 3.434319 GACGACGTGGTAGCCGGA 61.434 66.667 5.05 0.00 0.00 5.14
108 109 3.392595 GACGACGTGGTAGCCGGAG 62.393 68.421 5.05 3.97 0.00 4.63
109 110 4.849329 CGACGTGGTAGCCGGAGC 62.849 72.222 5.05 0.00 40.32 4.70
123 124 3.426568 GAGCTGCTCCAACGGTGC 61.427 66.667 18.80 0.15 41.88 5.01
146 147 4.358841 CATGTTGGTGGCGGGGGA 62.359 66.667 0.00 0.00 0.00 4.81
147 148 4.047125 ATGTTGGTGGCGGGGGAG 62.047 66.667 0.00 0.00 0.00 4.30
149 150 4.717313 GTTGGTGGCGGGGGAGTC 62.717 72.222 0.00 0.00 0.00 3.36
162 163 4.047059 GAGTCGGCGTCGGGACAA 62.047 66.667 10.62 0.00 35.63 3.18
163 164 3.966026 GAGTCGGCGTCGGGACAAG 62.966 68.421 10.62 0.00 35.63 3.16
198 199 4.057428 GGAGCTCGAGTGTGCGGT 62.057 66.667 15.13 0.00 39.53 5.68
199 200 2.049063 GAGCTCGAGTGTGCGGTT 60.049 61.111 15.13 0.00 39.53 4.44
200 201 2.356313 AGCTCGAGTGTGCGGTTG 60.356 61.111 15.13 0.00 39.53 3.77
201 202 2.355837 GCTCGAGTGTGCGGTTGA 60.356 61.111 15.13 0.00 0.00 3.18
202 203 1.738099 GCTCGAGTGTGCGGTTGAT 60.738 57.895 15.13 0.00 0.00 2.57
203 204 1.959899 GCTCGAGTGTGCGGTTGATG 61.960 60.000 15.13 0.00 0.00 3.07
204 205 1.354337 CTCGAGTGTGCGGTTGATGG 61.354 60.000 3.62 0.00 0.00 3.51
205 206 2.870372 GAGTGTGCGGTTGATGGC 59.130 61.111 0.00 0.00 0.00 4.40
206 207 1.672356 GAGTGTGCGGTTGATGGCT 60.672 57.895 0.00 0.00 0.00 4.75
207 208 1.639298 GAGTGTGCGGTTGATGGCTC 61.639 60.000 0.00 0.00 0.00 4.70
208 209 2.741985 TGTGCGGTTGATGGCTCG 60.742 61.111 0.00 0.00 0.00 5.03
209 210 3.499737 GTGCGGTTGATGGCTCGG 61.500 66.667 0.00 0.00 0.00 4.63
210 211 4.776322 TGCGGTTGATGGCTCGGG 62.776 66.667 0.00 0.00 0.00 5.14
225 226 4.015382 GGGCGCGTGCGTTTGTTA 62.015 61.111 15.81 0.00 44.10 2.41
226 227 2.174835 GGCGCGTGCGTTTGTTAT 59.825 55.556 15.81 0.00 44.10 1.89
227 228 1.420702 GGCGCGTGCGTTTGTTATA 59.579 52.632 15.81 0.00 44.10 0.98
228 229 0.585519 GGCGCGTGCGTTTGTTATAG 60.586 55.000 15.81 0.00 44.10 1.31
229 230 1.185733 GCGCGTGCGTTTGTTATAGC 61.186 55.000 16.27 0.00 42.09 2.97
230 231 0.585519 CGCGTGCGTTTGTTATAGCC 60.586 55.000 6.00 0.00 34.35 3.93
231 232 0.247934 GCGTGCGTTTGTTATAGCCC 60.248 55.000 0.00 0.00 0.00 5.19
232 233 0.025770 CGTGCGTTTGTTATAGCCCG 59.974 55.000 0.00 0.00 0.00 6.13
233 234 0.247934 GTGCGTTTGTTATAGCCCGC 60.248 55.000 7.94 7.94 41.34 6.13
234 235 1.354155 GCGTTTGTTATAGCCCGCC 59.646 57.895 0.00 0.00 35.45 6.13
235 236 1.639534 CGTTTGTTATAGCCCGCCG 59.360 57.895 0.00 0.00 0.00 6.46
236 237 1.768112 CGTTTGTTATAGCCCGCCGG 61.768 60.000 0.00 0.00 0.00 6.13
237 238 0.462403 GTTTGTTATAGCCCGCCGGA 60.462 55.000 5.05 0.00 0.00 5.14
238 239 0.462403 TTTGTTATAGCCCGCCGGAC 60.462 55.000 5.05 0.00 0.00 4.79
239 240 1.615165 TTGTTATAGCCCGCCGGACA 61.615 55.000 5.05 0.00 0.00 4.02
240 241 1.370064 GTTATAGCCCGCCGGACAT 59.630 57.895 5.05 0.00 0.00 3.06
241 242 0.669625 GTTATAGCCCGCCGGACATC 60.670 60.000 5.05 0.00 0.00 3.06
242 243 2.149803 TTATAGCCCGCCGGACATCG 62.150 60.000 5.05 0.00 38.88 3.84
265 266 4.715523 CGGGCCCTTTTCGCTGGA 62.716 66.667 22.43 0.00 0.00 3.86
266 267 2.282887 GGGCCCTTTTCGCTGGAA 60.283 61.111 17.04 0.00 0.00 3.53
267 268 1.682344 GGGCCCTTTTCGCTGGAAT 60.682 57.895 17.04 0.00 30.88 3.01
268 269 1.257750 GGGCCCTTTTCGCTGGAATT 61.258 55.000 17.04 0.00 30.88 2.17
269 270 0.608130 GGCCCTTTTCGCTGGAATTT 59.392 50.000 0.00 0.00 30.88 1.82
270 271 1.404181 GGCCCTTTTCGCTGGAATTTC 60.404 52.381 0.00 0.00 30.88 2.17
271 272 1.404181 GCCCTTTTCGCTGGAATTTCC 60.404 52.381 8.59 8.59 36.96 3.13
272 273 1.204704 CCCTTTTCGCTGGAATTTCCC 59.795 52.381 12.90 0.00 35.03 3.97
273 274 1.135402 CCTTTTCGCTGGAATTTCCCG 60.135 52.381 12.90 9.94 35.03 5.14
274 275 0.242555 TTTTCGCTGGAATTTCCCGC 59.757 50.000 18.82 18.82 42.44 6.13
277 278 4.193334 GCTGGAATTTCCCGCGCC 62.193 66.667 14.91 0.00 37.04 6.53
278 279 3.518068 CTGGAATTTCCCGCGCCC 61.518 66.667 12.90 0.00 35.03 6.13
280 281 4.815108 GGAATTTCCCGCGCCCCT 62.815 66.667 0.00 0.00 0.00 4.79
281 282 3.518068 GAATTTCCCGCGCCCCTG 61.518 66.667 0.00 0.00 0.00 4.45
295 296 4.445545 CCTGGAGCGCGCGAAAAC 62.446 66.667 37.18 20.04 0.00 2.43
296 297 3.711842 CTGGAGCGCGCGAAAACA 61.712 61.111 37.18 23.51 0.00 2.83
297 298 3.911155 CTGGAGCGCGCGAAAACAC 62.911 63.158 37.18 15.10 0.00 3.32
298 299 3.712881 GGAGCGCGCGAAAACACT 61.713 61.111 37.18 20.36 0.00 3.55
299 300 2.202058 GAGCGCGCGAAAACACTC 60.202 61.111 37.18 24.49 0.00 3.51
300 301 3.631049 GAGCGCGCGAAAACACTCC 62.631 63.158 37.18 12.54 0.00 3.85
314 315 4.845824 CTCCGCGCGCGCTAAAAC 62.846 66.667 45.97 22.00 39.32 2.43
316 317 4.728095 CCGCGCGCGCTAAAACAA 62.728 61.111 45.97 0.00 39.32 2.83
317 318 3.511582 CGCGCGCGCTAAAACAAC 61.512 61.111 45.97 19.75 39.32 3.32
318 319 2.127383 GCGCGCGCTAAAACAACT 60.127 55.556 44.38 0.00 38.26 3.16
319 320 2.417553 GCGCGCGCTAAAACAACTG 61.418 57.895 44.38 10.35 38.26 3.16
320 321 1.083015 CGCGCGCTAAAACAACTGT 60.083 52.632 30.48 0.00 0.00 3.55
321 322 0.656205 CGCGCGCTAAAACAACTGTT 60.656 50.000 30.48 0.00 40.50 3.16
323 324 1.446833 GCGCGCTAAAACAACTGTTTC 59.553 47.619 26.67 0.00 46.47 2.78
324 325 2.041244 CGCGCTAAAACAACTGTTTCC 58.959 47.619 5.56 0.75 46.47 3.13
325 326 2.041244 GCGCTAAAACAACTGTTTCCG 58.959 47.619 8.22 11.66 46.47 4.30
326 327 2.041244 CGCTAAAACAACTGTTTCCGC 58.959 47.619 8.22 11.80 46.47 5.54
327 328 2.041244 GCTAAAACAACTGTTTCCGCG 58.959 47.619 8.22 0.00 46.47 6.46
328 329 2.041244 CTAAAACAACTGTTTCCGCGC 58.959 47.619 8.22 0.00 46.47 6.86
329 330 0.863957 AAAACAACTGTTTCCGCGCG 60.864 50.000 25.67 25.67 46.47 6.86
330 331 3.800323 AACAACTGTTTCCGCGCGC 62.800 57.895 27.36 23.91 33.93 6.86
356 357 5.799960 CACTGTTGGAGTTGCTATAAATCG 58.200 41.667 0.00 0.00 29.75 3.34
357 358 4.332819 ACTGTTGGAGTTGCTATAAATCGC 59.667 41.667 0.00 0.00 0.00 4.58
358 359 4.257731 TGTTGGAGTTGCTATAAATCGCA 58.742 39.130 0.00 0.00 0.00 5.10
359 360 4.094294 TGTTGGAGTTGCTATAAATCGCAC 59.906 41.667 0.00 0.00 35.60 5.34
360 361 3.867857 TGGAGTTGCTATAAATCGCACA 58.132 40.909 0.00 0.00 35.60 4.57
361 362 4.257731 TGGAGTTGCTATAAATCGCACAA 58.742 39.130 0.00 0.00 35.60 3.33
362 363 4.697828 TGGAGTTGCTATAAATCGCACAAA 59.302 37.500 0.00 0.00 35.60 2.83
363 364 5.182190 TGGAGTTGCTATAAATCGCACAAAA 59.818 36.000 0.00 0.00 35.60 2.44
364 365 5.511729 GGAGTTGCTATAAATCGCACAAAAC 59.488 40.000 0.00 0.00 35.60 2.43
365 366 5.399013 AGTTGCTATAAATCGCACAAAACC 58.601 37.500 0.00 0.00 35.60 3.27
366 367 5.183140 AGTTGCTATAAATCGCACAAAACCT 59.817 36.000 0.00 0.00 35.60 3.50
367 368 5.637006 TGCTATAAATCGCACAAAACCTT 57.363 34.783 0.00 0.00 0.00 3.50
368 369 5.398169 TGCTATAAATCGCACAAAACCTTG 58.602 37.500 0.00 0.00 38.61 3.61
375 376 2.811799 ACAAAACCTTGTGGCGGC 59.188 55.556 0.00 0.00 44.28 6.53
376 377 1.756561 ACAAAACCTTGTGGCGGCT 60.757 52.632 11.43 0.00 44.28 5.52
377 378 1.300080 CAAAACCTTGTGGCGGCTG 60.300 57.895 11.43 0.00 36.63 4.85
378 379 3.150647 AAAACCTTGTGGCGGCTGC 62.151 57.895 9.72 9.72 41.71 5.25
389 390 3.499737 CGGCTGCGTGAACCCATC 61.500 66.667 0.00 0.00 0.00 3.51
390 391 3.134127 GGCTGCGTGAACCCATCC 61.134 66.667 0.00 0.00 0.00 3.51
391 392 2.359850 GCTGCGTGAACCCATCCA 60.360 61.111 0.00 0.00 0.00 3.41
392 393 1.750399 GCTGCGTGAACCCATCCAT 60.750 57.895 0.00 0.00 0.00 3.41
393 394 1.718757 GCTGCGTGAACCCATCCATC 61.719 60.000 0.00 0.00 0.00 3.51
394 395 0.392863 CTGCGTGAACCCATCCATCA 60.393 55.000 0.00 0.00 0.00 3.07
395 396 0.676466 TGCGTGAACCCATCCATCAC 60.676 55.000 0.00 0.00 39.98 3.06
397 398 3.853104 GTGAACCCATCCATCACGA 57.147 52.632 0.00 0.00 34.72 4.35
398 399 1.656652 GTGAACCCATCCATCACGAG 58.343 55.000 0.00 0.00 34.72 4.18
399 400 0.107703 TGAACCCATCCATCACGAGC 60.108 55.000 0.00 0.00 0.00 5.03
400 401 0.179000 GAACCCATCCATCACGAGCT 59.821 55.000 0.00 0.00 0.00 4.09
401 402 0.620556 AACCCATCCATCACGAGCTT 59.379 50.000 0.00 0.00 0.00 3.74
402 403 0.179000 ACCCATCCATCACGAGCTTC 59.821 55.000 0.00 0.00 0.00 3.86
403 404 0.877649 CCCATCCATCACGAGCTTCG 60.878 60.000 0.00 0.00 46.93 3.79
404 405 0.103026 CCATCCATCACGAGCTTCGA 59.897 55.000 11.64 0.00 43.74 3.71
405 406 1.203928 CATCCATCACGAGCTTCGAC 58.796 55.000 11.64 0.00 43.74 4.20
406 407 0.103208 ATCCATCACGAGCTTCGACC 59.897 55.000 11.64 0.00 43.74 4.79
407 408 1.519455 CCATCACGAGCTTCGACCC 60.519 63.158 11.64 0.00 43.74 4.46
408 409 1.215382 CATCACGAGCTTCGACCCA 59.785 57.895 11.64 0.00 43.74 4.51
409 410 0.179100 CATCACGAGCTTCGACCCAT 60.179 55.000 11.64 0.00 43.74 4.00
410 411 0.537188 ATCACGAGCTTCGACCCATT 59.463 50.000 11.64 0.00 43.74 3.16
411 412 0.108804 TCACGAGCTTCGACCCATTC 60.109 55.000 11.64 0.00 43.74 2.67
412 413 1.084370 CACGAGCTTCGACCCATTCC 61.084 60.000 11.64 0.00 43.74 3.01
413 414 1.878522 CGAGCTTCGACCCATTCCG 60.879 63.158 0.00 0.00 43.74 4.30
414 415 2.125106 AGCTTCGACCCATTCCGC 60.125 61.111 0.00 0.00 0.00 5.54
415 416 3.202706 GCTTCGACCCATTCCGCC 61.203 66.667 0.00 0.00 0.00 6.13
416 417 2.890474 CTTCGACCCATTCCGCCG 60.890 66.667 0.00 0.00 0.00 6.46
424 425 4.834892 CATTCCGCCGCCGCAAAG 62.835 66.667 0.00 0.00 34.03 2.77
451 452 4.760047 GCACCCGGCACATCGTCT 62.760 66.667 0.00 0.00 43.97 4.18
452 453 2.815211 CACCCGGCACATCGTCTG 60.815 66.667 0.00 0.00 0.00 3.51
453 454 4.760047 ACCCGGCACATCGTCTGC 62.760 66.667 0.00 0.00 0.00 4.26
458 459 2.821366 GCACATCGTCTGCCCCAG 60.821 66.667 0.00 0.00 0.00 4.45
459 460 2.665000 CACATCGTCTGCCCCAGT 59.335 61.111 0.00 0.00 32.61 4.00
460 461 1.448540 CACATCGTCTGCCCCAGTC 60.449 63.158 0.00 0.00 32.61 3.51
461 462 2.187946 CATCGTCTGCCCCAGTCC 59.812 66.667 0.00 0.00 32.61 3.85
462 463 2.284625 ATCGTCTGCCCCAGTCCA 60.285 61.111 0.00 0.00 32.61 4.02
463 464 1.690633 ATCGTCTGCCCCAGTCCAT 60.691 57.895 0.00 0.00 32.61 3.41
464 465 1.690219 ATCGTCTGCCCCAGTCCATC 61.690 60.000 0.00 0.00 32.61 3.51
465 466 2.187946 GTCTGCCCCAGTCCATCG 59.812 66.667 0.00 0.00 32.61 3.84
466 467 2.038813 TCTGCCCCAGTCCATCGA 59.961 61.111 0.00 0.00 32.61 3.59
467 468 1.383109 TCTGCCCCAGTCCATCGAT 60.383 57.895 0.00 0.00 32.61 3.59
468 469 1.070445 CTGCCCCAGTCCATCGATC 59.930 63.158 0.00 0.00 0.00 3.69
469 470 1.688884 TGCCCCAGTCCATCGATCA 60.689 57.895 0.00 0.00 0.00 2.92
470 471 1.056125 TGCCCCAGTCCATCGATCAT 61.056 55.000 0.00 0.00 0.00 2.45
471 472 0.321122 GCCCCAGTCCATCGATCATC 60.321 60.000 0.00 0.00 0.00 2.92
472 473 0.322975 CCCCAGTCCATCGATCATCC 59.677 60.000 0.00 0.00 0.00 3.51
473 474 1.051008 CCCAGTCCATCGATCATCCA 58.949 55.000 0.00 0.00 0.00 3.41
474 475 1.627329 CCCAGTCCATCGATCATCCAT 59.373 52.381 0.00 0.00 0.00 3.41
475 476 2.354503 CCCAGTCCATCGATCATCCATC 60.355 54.545 0.00 0.00 0.00 3.51
476 477 2.301009 CCAGTCCATCGATCATCCATCA 59.699 50.000 0.00 0.00 0.00 3.07
477 478 3.324117 CAGTCCATCGATCATCCATCAC 58.676 50.000 0.00 0.00 0.00 3.06
478 479 2.029560 AGTCCATCGATCATCCATCACG 60.030 50.000 0.00 0.00 0.00 4.35
479 480 2.029918 GTCCATCGATCATCCATCACGA 60.030 50.000 0.00 0.00 37.39 4.35
480 481 2.229784 TCCATCGATCATCCATCACGAG 59.770 50.000 0.00 0.00 36.49 4.18
481 482 2.029560 CCATCGATCATCCATCACGAGT 60.030 50.000 0.00 0.00 36.49 4.18
482 483 3.553715 CCATCGATCATCCATCACGAGTT 60.554 47.826 0.00 0.00 36.49 3.01
483 484 3.801114 TCGATCATCCATCACGAGTTT 57.199 42.857 0.00 0.00 0.00 2.66
484 485 3.706698 TCGATCATCCATCACGAGTTTC 58.293 45.455 0.00 0.00 0.00 2.78
485 486 3.381590 TCGATCATCCATCACGAGTTTCT 59.618 43.478 0.00 0.00 0.00 2.52
486 487 3.488678 CGATCATCCATCACGAGTTTCTG 59.511 47.826 0.00 0.00 0.00 3.02
487 488 3.961480 TCATCCATCACGAGTTTCTGT 57.039 42.857 0.00 0.00 0.00 3.41
488 489 4.271696 TCATCCATCACGAGTTTCTGTT 57.728 40.909 0.00 0.00 0.00 3.16
489 490 5.400066 TCATCCATCACGAGTTTCTGTTA 57.600 39.130 0.00 0.00 0.00 2.41
490 491 5.168569 TCATCCATCACGAGTTTCTGTTAC 58.831 41.667 0.00 0.00 0.00 2.50
491 492 4.594123 TCCATCACGAGTTTCTGTTACA 57.406 40.909 0.00 0.00 0.00 2.41
492 493 5.147330 TCCATCACGAGTTTCTGTTACAT 57.853 39.130 0.00 0.00 0.00 2.29
493 494 5.168569 TCCATCACGAGTTTCTGTTACATC 58.831 41.667 0.00 0.00 0.00 3.06
494 495 5.047306 TCCATCACGAGTTTCTGTTACATCT 60.047 40.000 0.00 0.00 0.00 2.90
495 496 5.062683 CCATCACGAGTTTCTGTTACATCTG 59.937 44.000 0.00 0.00 0.00 2.90
496 497 5.196341 TCACGAGTTTCTGTTACATCTGT 57.804 39.130 0.00 0.00 0.00 3.41
497 498 4.982295 TCACGAGTTTCTGTTACATCTGTG 59.018 41.667 0.00 0.00 0.00 3.66
498 499 4.982295 CACGAGTTTCTGTTACATCTGTGA 59.018 41.667 0.00 0.00 0.00 3.58
499 500 5.462068 CACGAGTTTCTGTTACATCTGTGAA 59.538 40.000 0.00 0.00 0.00 3.18
500 501 6.146184 CACGAGTTTCTGTTACATCTGTGAAT 59.854 38.462 0.00 0.00 0.00 2.57
501 502 6.706270 ACGAGTTTCTGTTACATCTGTGAATT 59.294 34.615 0.00 0.00 0.00 2.17
502 503 7.011773 CGAGTTTCTGTTACATCTGTGAATTG 58.988 38.462 0.00 0.00 0.00 2.32
503 504 7.095649 CGAGTTTCTGTTACATCTGTGAATTGA 60.096 37.037 0.00 0.00 0.00 2.57
504 505 8.627208 AGTTTCTGTTACATCTGTGAATTGAT 57.373 30.769 0.00 0.00 0.00 2.57
505 506 9.725019 AGTTTCTGTTACATCTGTGAATTGATA 57.275 29.630 0.00 0.00 0.00 2.15
506 507 9.979270 GTTTCTGTTACATCTGTGAATTGATAG 57.021 33.333 0.00 0.00 0.00 2.08
507 508 8.722480 TTCTGTTACATCTGTGAATTGATAGG 57.278 34.615 0.00 0.00 0.00 2.57
508 509 7.275183 TCTGTTACATCTGTGAATTGATAGGG 58.725 38.462 0.00 0.00 0.00 3.53
509 510 6.957631 TGTTACATCTGTGAATTGATAGGGT 58.042 36.000 0.00 0.00 0.00 4.34
510 511 7.402054 TGTTACATCTGTGAATTGATAGGGTT 58.598 34.615 0.00 0.00 0.00 4.11
511 512 7.336679 TGTTACATCTGTGAATTGATAGGGTTG 59.663 37.037 0.00 0.00 0.00 3.77
512 513 5.819991 ACATCTGTGAATTGATAGGGTTGT 58.180 37.500 0.00 0.00 0.00 3.32
513 514 5.649395 ACATCTGTGAATTGATAGGGTTGTG 59.351 40.000 0.00 0.00 0.00 3.33
514 515 5.497464 TCTGTGAATTGATAGGGTTGTGA 57.503 39.130 0.00 0.00 0.00 3.58
515 516 5.245531 TCTGTGAATTGATAGGGTTGTGAC 58.754 41.667 0.00 0.00 0.00 3.67
516 517 4.000325 TGTGAATTGATAGGGTTGTGACG 59.000 43.478 0.00 0.00 0.00 4.35
517 518 4.000988 GTGAATTGATAGGGTTGTGACGT 58.999 43.478 0.00 0.00 0.00 4.34
518 519 4.454504 GTGAATTGATAGGGTTGTGACGTT 59.545 41.667 0.00 0.00 0.00 3.99
519 520 4.454161 TGAATTGATAGGGTTGTGACGTTG 59.546 41.667 0.00 0.00 0.00 4.10
520 521 3.755112 TTGATAGGGTTGTGACGTTGA 57.245 42.857 0.00 0.00 0.00 3.18
521 522 3.973206 TGATAGGGTTGTGACGTTGAT 57.027 42.857 0.00 0.00 0.00 2.57
522 523 3.595173 TGATAGGGTTGTGACGTTGATG 58.405 45.455 0.00 0.00 0.00 3.07
523 524 1.803334 TAGGGTTGTGACGTTGATGC 58.197 50.000 0.00 0.00 0.00 3.91
524 525 0.889186 AGGGTTGTGACGTTGATGCC 60.889 55.000 0.00 0.00 0.00 4.40
525 526 1.169661 GGGTTGTGACGTTGATGCCA 61.170 55.000 0.00 0.00 0.00 4.92
526 527 0.040425 GGTTGTGACGTTGATGCCAC 60.040 55.000 0.00 0.00 0.00 5.01
527 528 0.660488 GTTGTGACGTTGATGCCACA 59.340 50.000 1.73 1.73 37.70 4.17
528 529 0.660488 TTGTGACGTTGATGCCACAC 59.340 50.000 5.12 0.00 38.99 3.82
529 530 0.462759 TGTGACGTTGATGCCACACA 60.463 50.000 1.73 0.00 34.96 3.72
530 531 0.660488 GTGACGTTGATGCCACACAA 59.340 50.000 0.00 0.00 0.00 3.33
531 532 1.064803 GTGACGTTGATGCCACACAAA 59.935 47.619 0.00 0.00 0.00 2.83
532 533 1.745653 TGACGTTGATGCCACACAAAA 59.254 42.857 0.00 0.00 0.00 2.44
533 534 2.360483 TGACGTTGATGCCACACAAAAT 59.640 40.909 0.00 0.00 0.00 1.82
534 535 2.979813 GACGTTGATGCCACACAAAATC 59.020 45.455 0.00 0.00 0.00 2.17
535 536 2.360483 ACGTTGATGCCACACAAAATCA 59.640 40.909 0.00 0.00 0.00 2.57
536 537 2.981805 CGTTGATGCCACACAAAATCAG 59.018 45.455 0.00 0.00 31.11 2.90
537 538 3.550639 CGTTGATGCCACACAAAATCAGT 60.551 43.478 0.00 0.00 31.11 3.41
538 539 3.921119 TGATGCCACACAAAATCAGTC 57.079 42.857 0.00 0.00 0.00 3.51
539 540 3.220940 TGATGCCACACAAAATCAGTCA 58.779 40.909 0.00 0.00 0.00 3.41
540 541 3.635836 TGATGCCACACAAAATCAGTCAA 59.364 39.130 0.00 0.00 0.00 3.18
541 542 4.281435 TGATGCCACACAAAATCAGTCAAT 59.719 37.500 0.00 0.00 0.00 2.57
542 543 3.979948 TGCCACACAAAATCAGTCAATG 58.020 40.909 0.00 0.00 0.00 2.82
543 544 2.733026 GCCACACAAAATCAGTCAATGC 59.267 45.455 0.00 0.00 0.00 3.56
544 545 2.981805 CCACACAAAATCAGTCAATGCG 59.018 45.455 0.00 0.00 0.00 4.73
545 546 3.304592 CCACACAAAATCAGTCAATGCGA 60.305 43.478 0.00 0.00 0.00 5.10
546 547 4.289342 CACACAAAATCAGTCAATGCGAA 58.711 39.130 0.00 0.00 0.00 4.70
547 548 4.146961 CACACAAAATCAGTCAATGCGAAC 59.853 41.667 0.00 0.00 0.00 3.95
548 549 3.358700 CACAAAATCAGTCAATGCGAACG 59.641 43.478 0.00 0.00 0.00 3.95
549 550 2.900122 AAATCAGTCAATGCGAACGG 57.100 45.000 0.00 0.00 0.00 4.44
550 551 1.086696 AATCAGTCAATGCGAACGGG 58.913 50.000 0.00 0.00 0.00 5.28
551 552 1.369091 ATCAGTCAATGCGAACGGGC 61.369 55.000 0.00 0.00 0.00 6.13
558 559 4.015406 TGCGAACGGGCATGTCCT 62.015 61.111 15.80 0.00 38.17 3.85
559 560 2.185867 GCGAACGGGCATGTCCTA 59.814 61.111 15.80 0.00 34.39 2.94
560 561 1.448893 GCGAACGGGCATGTCCTAA 60.449 57.895 15.80 0.00 34.39 2.69
689 690 2.564721 GGTTCCACTTGCTGCCCAC 61.565 63.158 0.00 0.00 0.00 4.61
701 702 2.230660 GCTGCCCACTAACTCAAAGTT 58.769 47.619 0.00 0.00 41.97 2.66
702 703 2.030805 GCTGCCCACTAACTCAAAGTTG 60.031 50.000 2.65 0.00 39.11 3.16
703 704 3.476552 CTGCCCACTAACTCAAAGTTGA 58.523 45.455 2.65 0.00 39.11 3.18
788 797 4.069300 TGGCAGCACATTTGATTTTCAA 57.931 36.364 0.00 0.00 34.03 2.69
829 856 6.809689 TGTGTCCTATTGTGTTACATTAGTCG 59.190 38.462 0.00 0.00 32.85 4.18
954 982 4.720046 TCTAGGCTCGATGATTACACTCT 58.280 43.478 0.00 0.00 0.00 3.24
1092 1122 7.487822 TGAGATGATGAGGAAGAAGTACTTT 57.512 36.000 10.02 0.00 39.13 2.66
1099 1129 7.821359 TGATGAGGAAGAAGTACTTTGATCTTG 59.179 37.037 10.02 0.00 39.13 3.02
1162 1192 0.178068 TCCGGGAAGTGCAATCTAGC 59.822 55.000 0.00 0.00 0.00 3.42
1245 1275 5.475273 TCTCTGACGAATCATTTGATTGC 57.525 39.130 10.39 2.57 44.14 3.56
1273 1303 6.539649 TTGATAAAGGTGTGAGTTTCTTCG 57.460 37.500 0.00 0.00 0.00 3.79
1285 1315 2.102588 AGTTTCTTCGTGCTACAGTGGT 59.897 45.455 0.00 0.00 0.00 4.16
1329 1360 4.916983 TTGACACACTTTGCTTAATGCT 57.083 36.364 0.00 0.00 43.37 3.79
1331 1362 2.982470 GACACACTTTGCTTAATGCTGC 59.018 45.455 0.00 0.00 43.37 5.25
1334 1365 3.671928 CACACTTTGCTTAATGCTGCTTC 59.328 43.478 0.00 0.00 43.37 3.86
1354 1385 6.036300 TGCTTCTTCTTTTTGTGCATTTCTTG 59.964 34.615 0.00 0.00 0.00 3.02
1394 1426 8.697846 TCTTTGATGGTAAGTAGTAACATTCG 57.302 34.615 0.00 0.00 40.41 3.34
1395 1427 8.525316 TCTTTGATGGTAAGTAGTAACATTCGA 58.475 33.333 0.00 0.00 40.41 3.71
1397 1429 9.661563 TTTGATGGTAAGTAGTAACATTCGATT 57.338 29.630 0.00 0.00 40.41 3.34
1410 1442 9.825972 AGTAACATTCGATTATTGTGTCTTTTG 57.174 29.630 0.00 0.00 0.00 2.44
1424 1456 7.101652 TGTGTCTTTTGCTTATTTTGGTACA 57.898 32.000 0.00 0.00 0.00 2.90
1425 1457 7.721402 TGTGTCTTTTGCTTATTTTGGTACAT 58.279 30.769 0.00 0.00 39.30 2.29
1427 1459 7.060633 GTGTCTTTTGCTTATTTTGGTACATCG 59.939 37.037 0.00 0.00 39.30 3.84
1447 1479 0.245266 TCAACATCGCGGTCTTGCTA 59.755 50.000 6.13 0.00 0.00 3.49
1452 1484 0.179108 ATCGCGGTCTTGCTACTTCC 60.179 55.000 6.13 0.00 0.00 3.46
1453 1485 1.080093 CGCGGTCTTGCTACTTCCA 60.080 57.895 0.00 0.00 0.00 3.53
1538 1571 4.675063 ATACTTTGACCCCCATTGAAGT 57.325 40.909 0.00 0.00 30.80 3.01
1544 1577 2.241176 TGACCCCCATTGAAGTATCACC 59.759 50.000 0.00 0.00 34.61 4.02
1550 1583 4.164221 CCCCATTGAAGTATCACCTACAGT 59.836 45.833 0.00 0.00 34.61 3.55
1558 1591 5.843673 AGTATCACCTACAGTCTCATGTG 57.156 43.478 0.00 0.00 34.56 3.21
1563 1596 1.633561 CTACAGTCTCATGTGCACCG 58.366 55.000 15.69 5.63 34.56 4.94
1573 1606 4.990426 TCTCATGTGCACCGATATATTGTG 59.010 41.667 15.69 10.45 0.00 3.33
1585 1618 6.425114 ACCGATATATTGTGAAGTTCAGCATC 59.575 38.462 5.62 2.72 0.00 3.91
1649 1682 0.919710 ACCAGGGGGAGTCTTTATGC 59.080 55.000 0.00 0.00 38.05 3.14
1671 1705 3.592059 TGGTACGCAGTTGGATAAGTTC 58.408 45.455 0.00 0.00 37.78 3.01
1673 1707 2.109425 ACGCAGTTGGATAAGTTCCC 57.891 50.000 0.00 0.00 44.77 3.97
1684 1719 2.762535 TAAGTTCCCTGTAGTGCAGC 57.237 50.000 2.15 0.00 43.71 5.25
1717 1752 7.062322 TGTCATTTCCTGCCACTGATTATAAT 58.938 34.615 0.00 0.00 0.00 1.28
1720 1755 6.942532 TTTCCTGCCACTGATTATAATGAC 57.057 37.500 1.78 0.00 0.00 3.06
1759 1794 7.713750 TGTACTGCTAGATAACTTATGGTGAC 58.286 38.462 0.00 0.00 0.00 3.67
1833 1868 2.592194 ACTGTACATTCTGCGTACGTG 58.408 47.619 17.90 9.18 41.76 4.49
1907 1942 8.110860 TGAAAACTCTCCCTGCTTAATAAAAG 57.889 34.615 0.00 0.00 0.00 2.27
1989 2024 6.562270 CGAGCTTTAACTTGTGTAGTCAACAG 60.562 42.308 0.00 0.00 39.29 3.16
2026 2187 9.293404 ACAGTAGTGTACTAGTTCATAAGAACA 57.707 33.333 12.94 0.00 45.71 3.18
2656 2820 7.764141 TGTTCTGGGTTTTTAGGTATTTACC 57.236 36.000 0.00 0.00 46.82 2.85
2869 3033 0.947960 TTTTCGGCATGCGAGTTTGA 59.052 45.000 12.44 0.00 0.00 2.69
2896 3060 8.873830 CAATCACTGTTCAGACGATAAATTACT 58.126 33.333 6.83 0.00 0.00 2.24
2897 3061 7.812309 TCACTGTTCAGACGATAAATTACTG 57.188 36.000 6.83 0.00 0.00 2.74
3039 3305 9.734620 TTTCTTGTTTCTTGTACTGAATGAATG 57.265 29.630 0.00 0.00 0.00 2.67
3040 3306 8.675705 TCTTGTTTCTTGTACTGAATGAATGA 57.324 30.769 0.00 0.00 0.00 2.57
3041 3307 9.119418 TCTTGTTTCTTGTACTGAATGAATGAA 57.881 29.630 0.00 0.00 0.00 2.57
3105 3371 3.359695 TTACAGTATCCCCTGGTTTGC 57.640 47.619 0.00 0.00 36.75 3.68
3257 3523 6.086785 ACAGTTTCCTATCTATACGGAAGC 57.913 41.667 0.00 0.00 38.02 3.86
3258 3524 5.597182 ACAGTTTCCTATCTATACGGAAGCA 59.403 40.000 0.00 0.00 39.56 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.057428 GAGACCACGCACGAGGCT 62.057 66.667 6.42 5.00 41.67 4.58
2 3 3.263503 TTCGAGACCACGCACGAGG 62.264 63.158 4.92 4.92 36.22 4.63
3 4 2.081212 GTTCGAGACCACGCACGAG 61.081 63.158 0.00 0.00 36.22 4.18
4 5 2.050714 GTTCGAGACCACGCACGA 60.051 61.111 0.00 0.00 0.00 4.35
5 6 3.458579 CGTTCGAGACCACGCACG 61.459 66.667 0.00 0.00 44.19 5.34
6 7 2.354305 ACGTTCGAGACCACGCAC 60.354 61.111 7.25 0.00 40.16 5.34
7 8 2.050714 GACGTTCGAGACCACGCA 60.051 61.111 7.25 0.00 40.16 5.24
8 9 2.804090 GGACGTTCGAGACCACGC 60.804 66.667 7.25 1.22 40.16 5.34
9 10 2.126580 GGGACGTTCGAGACCACG 60.127 66.667 5.86 5.86 42.29 4.94
29 30 4.796231 ATGGTGCGCGTCTCGGTC 62.796 66.667 8.43 0.00 38.94 4.79
30 31 4.796231 GATGGTGCGCGTCTCGGT 62.796 66.667 8.43 0.00 38.94 4.69
33 34 4.492160 TCCGATGGTGCGCGTCTC 62.492 66.667 8.43 0.70 0.00 3.36
34 35 4.498520 CTCCGATGGTGCGCGTCT 62.499 66.667 8.43 0.00 0.00 4.18
38 39 4.819761 TCAGCTCCGATGGTGCGC 62.820 66.667 0.00 0.00 45.53 6.09
39 40 1.953138 GATCAGCTCCGATGGTGCG 60.953 63.158 4.43 1.04 45.53 5.34
40 41 0.599728 GAGATCAGCTCCGATGGTGC 60.600 60.000 1.77 1.77 41.85 5.01
41 42 3.584586 GAGATCAGCTCCGATGGTG 57.415 57.895 0.00 0.00 37.69 4.17
49 50 0.663688 TTCTACGCGGAGATCAGCTC 59.336 55.000 24.23 0.00 43.17 4.09
50 51 0.382515 GTTCTACGCGGAGATCAGCT 59.617 55.000 24.23 0.00 34.89 4.24
51 52 0.930742 CGTTCTACGCGGAGATCAGC 60.931 60.000 24.23 11.83 33.65 4.26
52 53 3.150335 CGTTCTACGCGGAGATCAG 57.850 57.895 24.23 12.71 33.65 2.90
62 63 2.158959 CCTTCCAGCGCGTTCTACG 61.159 63.158 8.43 0.00 45.88 3.51
63 64 1.810030 CCCTTCCAGCGCGTTCTAC 60.810 63.158 8.43 0.00 0.00 2.59
64 65 2.577059 CCCTTCCAGCGCGTTCTA 59.423 61.111 8.43 0.00 0.00 2.10
84 85 3.989566 CTACCACGTCGTCCGCGTC 62.990 68.421 4.92 0.00 40.90 5.19
85 86 4.093952 CTACCACGTCGTCCGCGT 62.094 66.667 4.92 3.94 43.90 6.01
88 89 4.824166 CGGCTACCACGTCGTCCG 62.824 72.222 7.89 7.89 44.03 4.79
89 90 4.487412 CCGGCTACCACGTCGTCC 62.487 72.222 0.00 0.00 0.00 4.79
90 91 3.392595 CTCCGGCTACCACGTCGTC 62.393 68.421 0.00 0.00 0.00 4.20
91 92 3.437795 CTCCGGCTACCACGTCGT 61.438 66.667 0.00 0.00 0.00 4.34
92 93 4.849329 GCTCCGGCTACCACGTCG 62.849 72.222 0.00 0.00 35.22 5.12
106 107 3.426568 GCACCGTTGGAGCAGCTC 61.427 66.667 14.69 14.69 39.08 4.09
129 130 4.358841 TCCCCCGCCACCAACATG 62.359 66.667 0.00 0.00 0.00 3.21
130 131 4.047125 CTCCCCCGCCACCAACAT 62.047 66.667 0.00 0.00 0.00 2.71
132 133 4.717313 GACTCCCCCGCCACCAAC 62.717 72.222 0.00 0.00 0.00 3.77
145 146 3.966026 CTTGTCCCGACGCCGACTC 62.966 68.421 12.65 0.00 38.22 3.36
146 147 4.052229 CTTGTCCCGACGCCGACT 62.052 66.667 12.65 0.00 38.22 4.18
181 182 3.575351 AACCGCACACTCGAGCTCC 62.575 63.158 13.61 0.00 0.00 4.70
182 183 2.049063 AACCGCACACTCGAGCTC 60.049 61.111 13.61 2.73 0.00 4.09
183 184 2.159819 ATCAACCGCACACTCGAGCT 62.160 55.000 13.61 0.00 0.00 4.09
184 185 1.738099 ATCAACCGCACACTCGAGC 60.738 57.895 13.61 0.00 0.00 5.03
185 186 1.354337 CCATCAACCGCACACTCGAG 61.354 60.000 11.84 11.84 0.00 4.04
186 187 1.374125 CCATCAACCGCACACTCGA 60.374 57.895 0.00 0.00 0.00 4.04
187 188 3.027170 GCCATCAACCGCACACTCG 62.027 63.158 0.00 0.00 0.00 4.18
188 189 1.639298 GAGCCATCAACCGCACACTC 61.639 60.000 0.00 0.00 0.00 3.51
189 190 1.672356 GAGCCATCAACCGCACACT 60.672 57.895 0.00 0.00 0.00 3.55
190 191 2.870372 GAGCCATCAACCGCACAC 59.130 61.111 0.00 0.00 0.00 3.82
191 192 2.741985 CGAGCCATCAACCGCACA 60.742 61.111 0.00 0.00 0.00 4.57
192 193 3.499737 CCGAGCCATCAACCGCAC 61.500 66.667 0.00 0.00 0.00 5.34
193 194 4.776322 CCCGAGCCATCAACCGCA 62.776 66.667 0.00 0.00 0.00 5.69
208 209 1.968703 TATAACAAACGCACGCGCCC 61.969 55.000 12.02 0.00 44.19 6.13
209 210 0.585519 CTATAACAAACGCACGCGCC 60.586 55.000 12.02 0.00 44.19 6.53
210 211 1.185733 GCTATAACAAACGCACGCGC 61.186 55.000 12.02 0.00 44.19 6.86
211 212 0.585519 GGCTATAACAAACGCACGCG 60.586 55.000 10.36 10.36 46.03 6.01
212 213 0.247934 GGGCTATAACAAACGCACGC 60.248 55.000 0.00 0.00 0.00 5.34
213 214 0.025770 CGGGCTATAACAAACGCACG 59.974 55.000 0.00 0.00 43.14 5.34
214 215 0.247934 GCGGGCTATAACAAACGCAC 60.248 55.000 0.00 0.00 45.57 5.34
215 216 2.091533 GCGGGCTATAACAAACGCA 58.908 52.632 0.00 0.00 45.57 5.24
216 217 1.354155 GGCGGGCTATAACAAACGC 59.646 57.895 0.00 0.00 45.53 4.84
217 218 1.639534 CGGCGGGCTATAACAAACG 59.360 57.895 0.00 0.00 0.00 3.60
218 219 0.462403 TCCGGCGGGCTATAACAAAC 60.462 55.000 27.98 0.00 0.00 2.93
219 220 0.462403 GTCCGGCGGGCTATAACAAA 60.462 55.000 25.70 0.00 0.00 2.83
220 221 1.144496 GTCCGGCGGGCTATAACAA 59.856 57.895 25.70 0.00 0.00 2.83
221 222 1.404479 ATGTCCGGCGGGCTATAACA 61.404 55.000 32.34 23.86 0.00 2.41
222 223 0.669625 GATGTCCGGCGGGCTATAAC 60.670 60.000 32.34 18.74 0.00 1.89
223 224 1.669440 GATGTCCGGCGGGCTATAA 59.331 57.895 32.34 12.02 0.00 0.98
224 225 2.632544 CGATGTCCGGCGGGCTATA 61.633 63.158 32.34 12.46 33.91 1.31
225 226 3.991051 CGATGTCCGGCGGGCTAT 61.991 66.667 32.34 22.25 33.91 2.97
248 249 4.715523 TCCAGCGAAAAGGGCCCG 62.716 66.667 18.44 4.80 0.00 6.13
249 250 1.257750 AATTCCAGCGAAAAGGGCCC 61.258 55.000 16.46 16.46 0.00 5.80
250 251 0.608130 AAATTCCAGCGAAAAGGGCC 59.392 50.000 0.00 0.00 0.00 5.80
251 252 1.404181 GGAAATTCCAGCGAAAAGGGC 60.404 52.381 7.23 0.00 36.28 5.19
252 253 1.204704 GGGAAATTCCAGCGAAAAGGG 59.795 52.381 14.68 0.00 38.64 3.95
253 254 1.135402 CGGGAAATTCCAGCGAAAAGG 60.135 52.381 14.68 0.00 38.64 3.11
254 255 1.732405 GCGGGAAATTCCAGCGAAAAG 60.732 52.381 20.34 0.00 46.92 2.27
255 256 0.242555 GCGGGAAATTCCAGCGAAAA 59.757 50.000 20.34 0.00 46.92 2.29
256 257 1.880186 GCGGGAAATTCCAGCGAAA 59.120 52.632 20.34 0.00 46.92 3.46
257 258 3.585856 GCGGGAAATTCCAGCGAA 58.414 55.556 20.34 0.00 46.92 4.70
261 262 3.518068 GGGCGCGGGAAATTCCAG 61.518 66.667 14.68 11.21 38.64 3.86
263 264 4.815108 AGGGGCGCGGGAAATTCC 62.815 66.667 8.83 2.79 35.23 3.01
264 265 3.518068 CAGGGGCGCGGGAAATTC 61.518 66.667 8.83 0.00 0.00 2.17
278 279 4.445545 GTTTTCGCGCGCTCCAGG 62.446 66.667 30.48 13.47 0.00 4.45
279 280 3.711842 TGTTTTCGCGCGCTCCAG 61.712 61.111 30.48 13.90 0.00 3.86
280 281 4.007940 GTGTTTTCGCGCGCTCCA 62.008 61.111 30.48 15.77 0.00 3.86
281 282 3.631049 GAGTGTTTTCGCGCGCTCC 62.631 63.158 30.48 13.15 36.54 4.70
282 283 2.202058 GAGTGTTTTCGCGCGCTC 60.202 61.111 30.48 20.46 35.51 5.03
283 284 3.712881 GGAGTGTTTTCGCGCGCT 61.713 61.111 30.48 15.72 35.20 5.92
301 302 2.127383 AGTTGTTTTAGCGCGCGC 60.127 55.556 45.10 45.10 42.33 6.86
302 303 0.656205 AACAGTTGTTTTAGCGCGCG 60.656 50.000 28.44 28.44 33.93 6.86
303 304 1.472990 AAACAGTTGTTTTAGCGCGC 58.527 45.000 26.66 26.66 45.07 6.86
312 313 2.326550 CGCGCGGAAACAGTTGTT 59.673 55.556 24.84 0.00 40.50 2.83
313 314 4.307908 GCGCGCGGAAACAGTTGT 62.308 61.111 33.06 0.00 0.00 3.32
328 329 2.972505 AACTCCAACAGTGGCGCG 60.973 61.111 0.00 0.00 45.54 6.86
329 330 2.639286 CAACTCCAACAGTGGCGC 59.361 61.111 0.00 0.00 45.54 6.53
330 331 2.639286 GCAACTCCAACAGTGGCG 59.361 61.111 0.00 0.00 42.49 5.69
333 334 5.727791 GCGATTTATAGCAACTCCAACAGTG 60.728 44.000 0.00 0.00 34.56 3.66
334 335 4.332819 GCGATTTATAGCAACTCCAACAGT 59.667 41.667 0.00 0.00 36.64 3.55
335 336 4.332543 TGCGATTTATAGCAACTCCAACAG 59.667 41.667 0.00 0.00 40.78 3.16
336 337 4.094294 GTGCGATTTATAGCAACTCCAACA 59.906 41.667 0.00 0.00 45.61 3.33
337 338 4.094294 TGTGCGATTTATAGCAACTCCAAC 59.906 41.667 0.00 0.00 45.61 3.77
338 339 4.257731 TGTGCGATTTATAGCAACTCCAA 58.742 39.130 0.00 0.00 45.61 3.53
339 340 3.867857 TGTGCGATTTATAGCAACTCCA 58.132 40.909 0.00 0.00 45.61 3.86
340 341 4.875544 TTGTGCGATTTATAGCAACTCC 57.124 40.909 0.00 0.00 45.61 3.85
341 342 5.511729 GGTTTTGTGCGATTTATAGCAACTC 59.488 40.000 0.00 0.00 45.61 3.01
342 343 5.183140 AGGTTTTGTGCGATTTATAGCAACT 59.817 36.000 0.00 0.00 45.61 3.16
343 344 5.399013 AGGTTTTGTGCGATTTATAGCAAC 58.601 37.500 0.00 0.00 45.61 4.17
344 345 5.637006 AGGTTTTGTGCGATTTATAGCAA 57.363 34.783 0.00 0.00 45.61 3.91
345 346 5.048364 ACAAGGTTTTGTGCGATTTATAGCA 60.048 36.000 0.00 0.00 45.54 3.49
346 347 5.399013 ACAAGGTTTTGTGCGATTTATAGC 58.601 37.500 0.00 0.00 45.54 2.97
359 360 1.300080 CAGCCGCCACAAGGTTTTG 60.300 57.895 0.00 0.00 40.24 2.44
360 361 3.128375 CAGCCGCCACAAGGTTTT 58.872 55.556 0.00 0.00 37.19 2.43
361 362 3.605664 GCAGCCGCCACAAGGTTT 61.606 61.111 0.00 0.00 37.19 3.27
372 373 3.499737 GATGGGTTCACGCAGCCG 61.500 66.667 0.98 0.00 42.14 5.52
374 375 1.718757 GATGGATGGGTTCACGCAGC 61.719 60.000 3.79 3.79 43.26 5.25
375 376 0.392863 TGATGGATGGGTTCACGCAG 60.393 55.000 2.92 0.00 42.14 5.18
376 377 0.676466 GTGATGGATGGGTTCACGCA 60.676 55.000 0.00 0.00 43.04 5.24
377 378 2.098293 GTGATGGATGGGTTCACGC 58.902 57.895 0.00 0.00 31.40 5.34
379 380 1.656652 CTCGTGATGGATGGGTTCAC 58.343 55.000 0.00 0.00 37.10 3.18
380 381 0.107703 GCTCGTGATGGATGGGTTCA 60.108 55.000 0.00 0.00 0.00 3.18
381 382 0.179000 AGCTCGTGATGGATGGGTTC 59.821 55.000 0.00 0.00 0.00 3.62
382 383 0.620556 AAGCTCGTGATGGATGGGTT 59.379 50.000 0.00 0.00 0.00 4.11
383 384 0.179000 GAAGCTCGTGATGGATGGGT 59.821 55.000 0.00 0.00 0.00 4.51
384 385 0.877649 CGAAGCTCGTGATGGATGGG 60.878 60.000 0.00 0.00 34.72 4.00
385 386 0.103026 TCGAAGCTCGTGATGGATGG 59.897 55.000 0.00 0.00 41.35 3.51
386 387 1.203928 GTCGAAGCTCGTGATGGATG 58.796 55.000 0.00 0.00 41.35 3.51
387 388 0.103208 GGTCGAAGCTCGTGATGGAT 59.897 55.000 0.00 0.00 41.35 3.41
388 389 1.511305 GGTCGAAGCTCGTGATGGA 59.489 57.895 0.00 0.00 41.35 3.41
389 390 1.519455 GGGTCGAAGCTCGTGATGG 60.519 63.158 0.00 0.00 41.35 3.51
390 391 0.179100 ATGGGTCGAAGCTCGTGATG 60.179 55.000 0.00 0.00 41.35 3.07
391 392 0.537188 AATGGGTCGAAGCTCGTGAT 59.463 50.000 0.00 0.00 41.35 3.06
392 393 0.108804 GAATGGGTCGAAGCTCGTGA 60.109 55.000 0.00 0.00 41.35 4.35
393 394 1.084370 GGAATGGGTCGAAGCTCGTG 61.084 60.000 0.00 0.00 41.35 4.35
394 395 1.218316 GGAATGGGTCGAAGCTCGT 59.782 57.895 0.00 0.00 41.35 4.18
395 396 1.878522 CGGAATGGGTCGAAGCTCG 60.879 63.158 0.00 0.00 42.10 5.03
396 397 2.174319 GCGGAATGGGTCGAAGCTC 61.174 63.158 0.00 0.00 0.00 4.09
397 398 2.125106 GCGGAATGGGTCGAAGCT 60.125 61.111 0.00 0.00 0.00 3.74
398 399 3.202706 GGCGGAATGGGTCGAAGC 61.203 66.667 0.00 0.00 0.00 3.86
399 400 2.890474 CGGCGGAATGGGTCGAAG 60.890 66.667 0.00 0.00 33.62 3.79
407 408 4.834892 CTTTGCGGCGGCGGAATG 62.835 66.667 36.07 32.41 44.10 2.67
434 435 4.760047 AGACGATGTGCCGGGTGC 62.760 66.667 2.18 0.00 41.77 5.01
435 436 2.815211 CAGACGATGTGCCGGGTG 60.815 66.667 2.18 0.00 0.00 4.61
436 437 4.760047 GCAGACGATGTGCCGGGT 62.760 66.667 2.18 0.00 34.67 5.28
441 442 2.821366 CTGGGGCAGACGATGTGC 60.821 66.667 0.00 0.00 40.42 4.57
442 443 1.448540 GACTGGGGCAGACGATGTG 60.449 63.158 0.00 0.00 35.18 3.21
443 444 2.660064 GGACTGGGGCAGACGATGT 61.660 63.158 0.00 0.00 35.18 3.06
444 445 1.976132 ATGGACTGGGGCAGACGATG 61.976 60.000 0.00 0.00 35.18 3.84
445 446 1.690219 GATGGACTGGGGCAGACGAT 61.690 60.000 0.00 0.00 35.18 3.73
446 447 2.284625 ATGGACTGGGGCAGACGA 60.285 61.111 0.00 0.00 35.18 4.20
447 448 2.187946 GATGGACTGGGGCAGACG 59.812 66.667 0.00 0.00 35.18 4.18
448 449 1.690219 ATCGATGGACTGGGGCAGAC 61.690 60.000 0.00 0.00 35.18 3.51
449 450 1.383109 ATCGATGGACTGGGGCAGA 60.383 57.895 0.00 0.00 35.18 4.26
450 451 1.070445 GATCGATGGACTGGGGCAG 59.930 63.158 0.54 0.00 37.52 4.85
451 452 1.056125 ATGATCGATGGACTGGGGCA 61.056 55.000 0.54 0.00 0.00 5.36
452 453 0.321122 GATGATCGATGGACTGGGGC 60.321 60.000 0.54 0.00 0.00 5.80
453 454 0.322975 GGATGATCGATGGACTGGGG 59.677 60.000 0.54 0.00 0.00 4.96
454 455 1.051008 TGGATGATCGATGGACTGGG 58.949 55.000 0.54 0.00 0.00 4.45
455 456 2.301009 TGATGGATGATCGATGGACTGG 59.699 50.000 0.54 0.00 33.17 4.00
456 457 3.324117 GTGATGGATGATCGATGGACTG 58.676 50.000 0.54 0.00 33.17 3.51
457 458 2.029560 CGTGATGGATGATCGATGGACT 60.030 50.000 0.54 0.00 33.17 3.85
458 459 2.029918 TCGTGATGGATGATCGATGGAC 60.030 50.000 0.54 0.00 33.17 4.02
459 460 2.229784 CTCGTGATGGATGATCGATGGA 59.770 50.000 0.54 0.00 33.17 3.41
460 461 2.029560 ACTCGTGATGGATGATCGATGG 60.030 50.000 0.54 0.00 33.17 3.51
461 462 3.294816 ACTCGTGATGGATGATCGATG 57.705 47.619 0.54 0.00 33.17 3.84
462 463 4.038522 AGAAACTCGTGATGGATGATCGAT 59.961 41.667 0.00 0.00 33.17 3.59
463 464 3.381590 AGAAACTCGTGATGGATGATCGA 59.618 43.478 0.00 0.00 33.17 3.59
464 465 3.488678 CAGAAACTCGTGATGGATGATCG 59.511 47.826 0.00 0.00 33.17 3.69
465 466 4.437239 ACAGAAACTCGTGATGGATGATC 58.563 43.478 0.00 0.00 0.00 2.92
466 467 4.478206 ACAGAAACTCGTGATGGATGAT 57.522 40.909 0.00 0.00 0.00 2.45
467 468 3.961480 ACAGAAACTCGTGATGGATGA 57.039 42.857 0.00 0.00 0.00 2.92
468 469 4.929211 TGTAACAGAAACTCGTGATGGATG 59.071 41.667 0.00 0.00 0.00 3.51
469 470 5.147330 TGTAACAGAAACTCGTGATGGAT 57.853 39.130 0.00 0.00 0.00 3.41
470 471 4.594123 TGTAACAGAAACTCGTGATGGA 57.406 40.909 0.00 0.00 0.00 3.41
471 472 5.062683 CAGATGTAACAGAAACTCGTGATGG 59.937 44.000 0.00 0.00 0.00 3.51
472 473 5.635280 ACAGATGTAACAGAAACTCGTGATG 59.365 40.000 0.00 0.00 0.00 3.07
473 474 5.635280 CACAGATGTAACAGAAACTCGTGAT 59.365 40.000 0.00 0.00 0.00 3.06
474 475 4.982295 CACAGATGTAACAGAAACTCGTGA 59.018 41.667 0.00 0.00 0.00 4.35
475 476 4.982295 TCACAGATGTAACAGAAACTCGTG 59.018 41.667 0.00 0.00 0.00 4.35
476 477 5.196341 TCACAGATGTAACAGAAACTCGT 57.804 39.130 0.00 0.00 0.00 4.18
477 478 6.712241 ATTCACAGATGTAACAGAAACTCG 57.288 37.500 0.00 0.00 0.00 4.18
478 479 8.087982 TCAATTCACAGATGTAACAGAAACTC 57.912 34.615 0.00 0.00 0.00 3.01
479 480 8.627208 ATCAATTCACAGATGTAACAGAAACT 57.373 30.769 0.00 0.00 0.00 2.66
480 481 9.979270 CTATCAATTCACAGATGTAACAGAAAC 57.021 33.333 0.00 0.00 0.00 2.78
481 482 9.166173 CCTATCAATTCACAGATGTAACAGAAA 57.834 33.333 0.00 0.00 0.00 2.52
482 483 7.770433 CCCTATCAATTCACAGATGTAACAGAA 59.230 37.037 0.00 0.00 0.00 3.02
483 484 7.092891 ACCCTATCAATTCACAGATGTAACAGA 60.093 37.037 0.00 0.00 0.00 3.41
484 485 7.050377 ACCCTATCAATTCACAGATGTAACAG 58.950 38.462 0.00 0.00 0.00 3.16
485 486 6.957631 ACCCTATCAATTCACAGATGTAACA 58.042 36.000 0.00 0.00 0.00 2.41
486 487 7.336931 ACAACCCTATCAATTCACAGATGTAAC 59.663 37.037 0.00 0.00 0.00 2.50
487 488 7.336679 CACAACCCTATCAATTCACAGATGTAA 59.663 37.037 0.00 0.00 0.00 2.41
488 489 6.823182 CACAACCCTATCAATTCACAGATGTA 59.177 38.462 0.00 0.00 0.00 2.29
489 490 5.649395 CACAACCCTATCAATTCACAGATGT 59.351 40.000 0.00 0.00 0.00 3.06
490 491 5.882000 TCACAACCCTATCAATTCACAGATG 59.118 40.000 0.00 0.00 0.00 2.90
491 492 5.882557 GTCACAACCCTATCAATTCACAGAT 59.117 40.000 0.00 0.00 0.00 2.90
492 493 5.245531 GTCACAACCCTATCAATTCACAGA 58.754 41.667 0.00 0.00 0.00 3.41
493 494 4.093408 CGTCACAACCCTATCAATTCACAG 59.907 45.833 0.00 0.00 0.00 3.66
494 495 4.000325 CGTCACAACCCTATCAATTCACA 59.000 43.478 0.00 0.00 0.00 3.58
495 496 4.000988 ACGTCACAACCCTATCAATTCAC 58.999 43.478 0.00 0.00 0.00 3.18
496 497 4.280436 ACGTCACAACCCTATCAATTCA 57.720 40.909 0.00 0.00 0.00 2.57
497 498 4.693566 TCAACGTCACAACCCTATCAATTC 59.306 41.667 0.00 0.00 0.00 2.17
498 499 4.647611 TCAACGTCACAACCCTATCAATT 58.352 39.130 0.00 0.00 0.00 2.32
499 500 4.280436 TCAACGTCACAACCCTATCAAT 57.720 40.909 0.00 0.00 0.00 2.57
500 501 3.755112 TCAACGTCACAACCCTATCAA 57.245 42.857 0.00 0.00 0.00 2.57
501 502 3.595173 CATCAACGTCACAACCCTATCA 58.405 45.455 0.00 0.00 0.00 2.15
502 503 2.351726 GCATCAACGTCACAACCCTATC 59.648 50.000 0.00 0.00 0.00 2.08
503 504 2.356135 GCATCAACGTCACAACCCTAT 58.644 47.619 0.00 0.00 0.00 2.57
504 505 1.609580 GGCATCAACGTCACAACCCTA 60.610 52.381 0.00 0.00 0.00 3.53
505 506 0.889186 GGCATCAACGTCACAACCCT 60.889 55.000 0.00 0.00 0.00 4.34
506 507 1.169661 TGGCATCAACGTCACAACCC 61.170 55.000 0.00 0.00 0.00 4.11
507 508 0.040425 GTGGCATCAACGTCACAACC 60.040 55.000 0.00 0.00 0.00 3.77
508 509 0.660488 TGTGGCATCAACGTCACAAC 59.340 50.000 3.29 0.00 37.22 3.32
509 510 0.660488 GTGTGGCATCAACGTCACAA 59.340 50.000 7.03 0.00 41.05 3.33
510 511 0.462759 TGTGTGGCATCAACGTCACA 60.463 50.000 1.73 1.73 37.73 3.58
511 512 0.660488 TTGTGTGGCATCAACGTCAC 59.340 50.000 0.00 0.00 0.00 3.67
512 513 1.383523 TTTGTGTGGCATCAACGTCA 58.616 45.000 7.40 0.00 0.00 4.35
513 514 2.483583 TTTTGTGTGGCATCAACGTC 57.516 45.000 7.40 0.00 0.00 4.34
514 515 2.360483 TGATTTTGTGTGGCATCAACGT 59.640 40.909 7.40 0.00 0.00 3.99
515 516 2.981805 CTGATTTTGTGTGGCATCAACG 59.018 45.455 7.40 0.00 0.00 4.10
516 517 3.981211 ACTGATTTTGTGTGGCATCAAC 58.019 40.909 7.40 0.22 0.00 3.18
517 518 3.635836 TGACTGATTTTGTGTGGCATCAA 59.364 39.130 0.00 0.00 0.00 2.57
518 519 3.220940 TGACTGATTTTGTGTGGCATCA 58.779 40.909 0.00 0.00 0.00 3.07
519 520 3.921119 TGACTGATTTTGTGTGGCATC 57.079 42.857 0.00 0.00 0.00 3.91
520 521 4.562082 CATTGACTGATTTTGTGTGGCAT 58.438 39.130 0.00 0.00 0.00 4.40
521 522 3.799574 GCATTGACTGATTTTGTGTGGCA 60.800 43.478 0.00 0.00 0.00 4.92
522 523 2.733026 GCATTGACTGATTTTGTGTGGC 59.267 45.455 0.00 0.00 0.00 5.01
523 524 2.981805 CGCATTGACTGATTTTGTGTGG 59.018 45.455 0.00 0.00 0.00 4.17
524 525 3.887741 TCGCATTGACTGATTTTGTGTG 58.112 40.909 0.00 0.00 0.00 3.82
525 526 4.290155 GTTCGCATTGACTGATTTTGTGT 58.710 39.130 0.00 0.00 0.00 3.72
526 527 3.358700 CGTTCGCATTGACTGATTTTGTG 59.641 43.478 0.00 0.00 0.00 3.33
527 528 3.554524 CGTTCGCATTGACTGATTTTGT 58.445 40.909 0.00 0.00 0.00 2.83
528 529 2.910482 CCGTTCGCATTGACTGATTTTG 59.090 45.455 0.00 0.00 0.00 2.44
529 530 2.095263 CCCGTTCGCATTGACTGATTTT 60.095 45.455 0.00 0.00 0.00 1.82
530 531 1.468520 CCCGTTCGCATTGACTGATTT 59.531 47.619 0.00 0.00 0.00 2.17
531 532 1.086696 CCCGTTCGCATTGACTGATT 58.913 50.000 0.00 0.00 0.00 2.57
532 533 1.369091 GCCCGTTCGCATTGACTGAT 61.369 55.000 0.00 0.00 0.00 2.90
533 534 2.032634 GCCCGTTCGCATTGACTGA 61.033 57.895 0.00 0.00 0.00 3.41
534 535 2.324330 TGCCCGTTCGCATTGACTG 61.324 57.895 0.00 0.00 32.62 3.51
535 536 2.031919 TGCCCGTTCGCATTGACT 59.968 55.556 0.00 0.00 32.62 3.41
541 542 2.173758 TTAGGACATGCCCGTTCGCA 62.174 55.000 0.00 0.00 44.35 5.10
542 543 0.814010 ATTAGGACATGCCCGTTCGC 60.814 55.000 0.00 0.00 37.37 4.70
543 544 0.937304 CATTAGGACATGCCCGTTCG 59.063 55.000 0.00 0.00 37.37 3.95
544 545 1.308998 CCATTAGGACATGCCCGTTC 58.691 55.000 0.00 0.00 37.37 3.95
545 546 0.106719 CCCATTAGGACATGCCCGTT 60.107 55.000 0.00 0.00 38.24 4.44
546 547 1.531748 CCCATTAGGACATGCCCGT 59.468 57.895 0.00 0.00 38.24 5.28
547 548 1.228245 CCCCATTAGGACATGCCCG 60.228 63.158 0.00 0.00 38.24 6.13
548 549 1.531602 GCCCCATTAGGACATGCCC 60.532 63.158 0.00 0.00 38.24 5.36
549 550 0.178953 ATGCCCCATTAGGACATGCC 60.179 55.000 0.00 0.00 38.24 4.40
550 551 0.963962 CATGCCCCATTAGGACATGC 59.036 55.000 0.00 0.00 40.21 4.06
551 552 0.963962 GCATGCCCCATTAGGACATG 59.036 55.000 6.36 3.87 45.02 3.21
552 553 0.557238 TGCATGCCCCATTAGGACAT 59.443 50.000 16.68 0.00 38.24 3.06
553 554 0.395586 GTGCATGCCCCATTAGGACA 60.396 55.000 16.68 0.00 38.24 4.02
554 555 0.395586 TGTGCATGCCCCATTAGGAC 60.396 55.000 16.68 3.50 38.24 3.85
555 556 0.106569 CTGTGCATGCCCCATTAGGA 60.107 55.000 16.68 0.00 38.24 2.94
556 557 0.396139 ACTGTGCATGCCCCATTAGG 60.396 55.000 16.68 2.83 0.00 2.69
557 558 0.742505 CACTGTGCATGCCCCATTAG 59.257 55.000 16.68 6.80 0.00 1.73
558 559 0.039472 ACACTGTGCATGCCCCATTA 59.961 50.000 16.68 0.00 0.00 1.90
559 560 1.228956 ACACTGTGCATGCCCCATT 60.229 52.632 16.68 3.30 0.00 3.16
560 561 1.980232 CACACTGTGCATGCCCCAT 60.980 57.895 16.68 0.00 0.00 4.00
579 580 8.462016 CCATAGTCCCTCTGAAAAATTAACTTG 58.538 37.037 0.00 0.00 0.00 3.16
788 797 5.790593 AGGACACAACGTTCATACAAGTAT 58.209 37.500 0.00 0.00 0.00 2.12
829 856 9.422196 GCATTGAAATATCTGTAACGAAACTAC 57.578 33.333 0.00 0.00 0.00 2.73
893 921 2.324541 ACTCTATCCAGATCAGCCCAC 58.675 52.381 0.00 0.00 0.00 4.61
977 1007 0.958822 TACGAACAGCAGAGCACAGA 59.041 50.000 0.00 0.00 0.00 3.41
979 1009 0.673985 ACTACGAACAGCAGAGCACA 59.326 50.000 0.00 0.00 0.00 4.57
1063 1093 9.995003 GTACTTCTTCCTCATCATCTCAATTAT 57.005 33.333 0.00 0.00 0.00 1.28
1092 1122 3.678289 ACATTGTAGCTGTGCAAGATCA 58.322 40.909 0.00 0.00 31.17 2.92
1099 1129 6.677781 TTTAAGGATACATTGTAGCTGTGC 57.322 37.500 11.52 0.00 41.41 4.57
1162 1192 4.872691 AGCTCATAAGGAAATCAACAGACG 59.127 41.667 0.00 0.00 0.00 4.18
1245 1275 3.009723 ACTCACACCTTTATCAATGGCG 58.990 45.455 0.00 0.00 0.00 5.69
1273 1303 7.668525 ACTTATTAGAAAACCACTGTAGCAC 57.331 36.000 0.00 0.00 0.00 4.40
1329 1360 5.663456 AGAAATGCACAAAAAGAAGAAGCA 58.337 33.333 0.00 0.00 34.78 3.91
1331 1362 7.760131 TCAAGAAATGCACAAAAAGAAGAAG 57.240 32.000 0.00 0.00 0.00 2.85
1334 1365 6.536224 ACCTTCAAGAAATGCACAAAAAGAAG 59.464 34.615 0.00 0.00 0.00 2.85
1354 1385 5.412904 CCATCAAAGAGTCCAAAGTACCTTC 59.587 44.000 0.00 0.00 0.00 3.46
1395 1427 9.777297 ACCAAAATAAGCAAAAGACACAATAAT 57.223 25.926 0.00 0.00 0.00 1.28
1397 1429 9.685828 GTACCAAAATAAGCAAAAGACACAATA 57.314 29.630 0.00 0.00 0.00 1.90
1410 1442 5.933790 TGTTGACGATGTACCAAAATAAGC 58.066 37.500 0.00 0.00 0.00 3.09
1424 1456 0.108804 AAGACCGCGATGTTGACGAT 60.109 50.000 8.23 0.00 0.00 3.73
1425 1457 1.006825 CAAGACCGCGATGTTGACGA 61.007 55.000 3.85 0.00 0.00 4.20
1427 1459 1.132640 GCAAGACCGCGATGTTGAC 59.867 57.895 15.61 1.60 0.00 3.18
1452 1484 1.893808 GCCTCCACACCACACTGTG 60.894 63.158 6.19 6.19 41.19 3.66
1453 1485 2.044806 GAGCCTCCACACCACACTGT 62.045 60.000 0.00 0.00 0.00 3.55
1538 1571 4.023291 TGCACATGAGACTGTAGGTGATA 58.977 43.478 0.00 0.00 30.76 2.15
1544 1577 1.202348 TCGGTGCACATGAGACTGTAG 59.798 52.381 20.43 0.00 0.00 2.74
1550 1583 4.990426 CACAATATATCGGTGCACATGAGA 59.010 41.667 20.43 13.43 0.00 3.27
1558 1591 5.559035 GCTGAACTTCACAATATATCGGTGC 60.559 44.000 10.95 1.18 32.69 5.01
1563 1596 6.939163 AGGGATGCTGAACTTCACAATATATC 59.061 38.462 0.00 0.00 0.00 1.63
1573 1606 1.760192 ATGCAGGGATGCTGAACTTC 58.240 50.000 1.53 0.00 35.49 3.01
1585 1618 3.287867 ACCACTGATAAGAATGCAGGG 57.712 47.619 0.00 0.00 34.05 4.45
1717 1752 6.039616 GCAGTACAGAAACAAAAATTGGTCA 58.960 36.000 0.00 0.00 34.12 4.02
1720 1755 7.648142 TCTAGCAGTACAGAAACAAAAATTGG 58.352 34.615 0.00 0.00 34.12 3.16
1736 1771 6.267014 GGGTCACCATAAGTTATCTAGCAGTA 59.733 42.308 0.00 0.00 36.50 2.74
1759 1794 1.502163 GAGGAATTCGCGCTGATGGG 61.502 60.000 5.56 0.00 0.00 4.00
1890 1925 9.267084 GAGATTCTACTTTTATTAAGCAGGGAG 57.733 37.037 0.00 0.00 0.00 4.30
1907 1942 4.692625 TGAGCAAGCAAACAGAGATTCTAC 59.307 41.667 0.00 0.00 0.00 2.59
1989 2024 5.230942 AGTACACTACTGTGAATTCAGTGC 58.769 41.667 19.26 11.43 46.36 4.40
2086 2248 6.387192 TCTTATGTTTCCCTTGAATCCAGA 57.613 37.500 0.00 0.00 0.00 3.86
2202 2364 3.574354 AATTCTTGGCCCTTTTTGCAA 57.426 38.095 0.00 0.00 0.00 4.08
2805 2969 7.004086 ACAATGACTAACCAGGAGAATGAAAA 58.996 34.615 0.00 0.00 0.00 2.29
2848 3012 1.069296 CAAACTCGCATGCCGAAAAGA 60.069 47.619 13.15 0.94 46.81 2.52
2869 3033 7.672983 AATTTATCGTCTGAACAGTGATTGT 57.327 32.000 0.00 0.00 43.45 2.71
2958 3223 3.460103 AGTATCAAACCACACGTTTCGT 58.540 40.909 0.00 0.00 42.98 3.85
3038 3304 7.776107 TGGTTTCAGTTGTTGTATCAATTTCA 58.224 30.769 0.00 0.00 0.00 2.69
3039 3305 8.702438 CATGGTTTCAGTTGTTGTATCAATTTC 58.298 33.333 0.00 0.00 0.00 2.17
3040 3306 7.171337 GCATGGTTTCAGTTGTTGTATCAATTT 59.829 33.333 0.00 0.00 0.00 1.82
3041 3307 6.646240 GCATGGTTTCAGTTGTTGTATCAATT 59.354 34.615 0.00 0.00 0.00 2.32
3051 3317 1.696063 AGCTGCATGGTTTCAGTTGT 58.304 45.000 1.02 0.00 33.09 3.32
3105 3371 8.840321 AGGAGAATGAAATTTATATGTTGGTCG 58.160 33.333 0.00 0.00 36.07 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.