Multiple sequence alignment - TraesCS2D01G087300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G087300 chr2D 100.000 6044 0 0 1 6044 37532500 37538543 0.000000e+00 11162.0
1 TraesCS2D01G087300 chr2D 95.421 546 22 3 181 724 651641910 651642454 0.000000e+00 867.0
2 TraesCS2D01G087300 chr2D 82.709 561 36 11 181 722 37925942 37926460 5.560000e-120 442.0
3 TraesCS2D01G087300 chr2D 97.814 183 4 0 1 183 506328361 506328179 3.520000e-82 316.0
4 TraesCS2D01G087300 chr2D 100.000 170 0 0 2846 3015 37535179 37535348 1.260000e-81 315.0
5 TraesCS2D01G087300 chr2D 100.000 170 0 0 2680 2849 37535345 37535514 1.260000e-81 315.0
6 TraesCS2D01G087300 chr2D 85.106 235 30 5 4613 4845 37618572 37618803 1.010000e-57 235.0
7 TraesCS2D01G087300 chr2D 94.393 107 4 2 5649 5754 37620142 37620247 4.850000e-36 163.0
8 TraesCS2D01G087300 chr2D 95.000 100 3 2 2981 3080 384255175 384255272 8.110000e-34 156.0
9 TraesCS2D01G087300 chr2D 95.652 46 1 1 673 717 646827921 646827966 8.400000e-09 73.1
10 TraesCS2D01G087300 chr2D 95.652 46 1 1 673 717 646846282 646846327 8.400000e-09 73.1
11 TraesCS2D01G087300 chr2A 92.383 2363 104 30 3632 5943 42400933 42403270 0.000000e+00 3297.0
12 TraesCS2D01G087300 chr2A 92.970 1522 74 15 1097 2602 42398352 42399856 0.000000e+00 2187.0
13 TraesCS2D01G087300 chr2A 94.588 388 18 2 3077 3461 42400112 42400499 1.120000e-166 597.0
14 TraesCS2D01G087300 chr2A 94.650 243 11 2 2589 2831 42399875 42400115 5.720000e-100 375.0
15 TraesCS2D01G087300 chr2A 91.213 239 12 3 720 958 42397549 42397778 3.520000e-82 316.0
16 TraesCS2D01G087300 chr2A 97.661 171 4 0 3463 3633 42400703 42400873 1.650000e-75 294.0
17 TraesCS2D01G087300 chr2A 96.053 152 6 0 2846 2997 42399964 42400115 1.300000e-61 248.0
18 TraesCS2D01G087300 chr2A 90.270 185 11 3 5763 5943 42405007 42405188 1.010000e-57 235.0
19 TraesCS2D01G087300 chr2A 90.270 185 11 3 5763 5943 42405507 42405688 1.010000e-57 235.0
20 TraesCS2D01G087300 chr2A 89.730 185 12 3 5763 5943 42404138 42404319 4.710000e-56 230.0
21 TraesCS2D01G087300 chr2A 89.730 185 12 3 5763 5943 42405757 42405938 4.710000e-56 230.0
22 TraesCS2D01G087300 chr2A 89.674 184 12 3 5763 5942 42405257 42405437 1.690000e-55 228.0
23 TraesCS2D01G087300 chr2A 89.189 185 13 3 5763 5943 42403888 42404069 2.190000e-54 224.0
24 TraesCS2D01G087300 chr2A 98.913 92 1 0 2989 3080 177665292 177665201 1.350000e-36 165.0
25 TraesCS2D01G087300 chr2A 92.523 107 4 2 5658 5764 42482101 42482203 3.770000e-32 150.0
26 TraesCS2D01G087300 chr2A 90.179 112 8 3 3357 3466 205917706 205917596 6.310000e-30 143.0
27 TraesCS2D01G087300 chr2A 88.393 112 11 2 3352 3462 727238662 727238772 3.800000e-27 134.0
28 TraesCS2D01G087300 chr2A 83.019 106 15 3 2475 2579 42399163 42399266 6.450000e-15 93.5
29 TraesCS2D01G087300 chr2A 92.537 67 2 1 5880 5943 42403753 42403819 6.450000e-15 93.5
30 TraesCS2D01G087300 chr2A 98.000 50 1 0 5763 5812 42403339 42403388 3.000000e-13 87.9
31 TraesCS2D01G087300 chr2A 95.833 48 1 1 671 717 13427697 13427650 6.500000e-10 76.8
32 TraesCS2D01G087300 chr2B 91.426 1073 57 19 723 1777 65313562 65314617 0.000000e+00 1439.0
33 TraesCS2D01G087300 chr2B 90.234 768 48 10 4624 5379 65316811 65317563 0.000000e+00 977.0
34 TraesCS2D01G087300 chr2B 91.429 665 50 4 3635 4297 65315979 65316638 0.000000e+00 905.0
35 TraesCS2D01G087300 chr2B 87.057 564 45 14 160 720 723051124 723051662 4.000000e-171 612.0
36 TraesCS2D01G087300 chr2B 96.875 96 2 1 2993 3087 774106647 774106552 6.270000e-35 159.0
37 TraesCS2D01G087300 chr2B 91.228 114 6 2 5645 5758 65433433 65433542 1.050000e-32 152.0
38 TraesCS2D01G087300 chr2B 88.281 128 12 3 5628 5755 65317867 65317991 3.770000e-32 150.0
39 TraesCS2D01G087300 chr2B 86.885 122 5 5 5645 5764 65669061 65669173 6.360000e-25 126.0
40 TraesCS2D01G087300 chr7D 95.159 723 14 6 1 720 87756254 87755550 0.000000e+00 1122.0
41 TraesCS2D01G087300 chr7D 96.252 507 17 2 181 686 122527028 122527533 0.000000e+00 830.0
42 TraesCS2D01G087300 chr7D 78.584 551 66 28 184 715 134489751 134489234 3.520000e-82 316.0
43 TraesCS2D01G087300 chr7D 85.393 89 10 2 5380 5465 601057626 601057714 8.340000e-14 89.8
44 TraesCS2D01G087300 chr7D 97.297 37 1 0 5426 5462 637733526 637733562 5.060000e-06 63.9
45 TraesCS2D01G087300 chr6B 91.897 543 25 12 160 699 345630813 345631339 0.000000e+00 741.0
46 TraesCS2D01G087300 chr6B 89.189 111 11 1 3357 3466 507471549 507471659 2.940000e-28 137.0
47 TraesCS2D01G087300 chr6B 87.069 116 11 4 3349 3462 585524727 585524840 1.770000e-25 128.0
48 TraesCS2D01G087300 chr4B 92.638 489 34 2 1006 1493 413492043 413491556 0.000000e+00 702.0
49 TraesCS2D01G087300 chr4B 78.804 368 63 11 3668 4023 413491103 413490739 3.640000e-57 233.0
50 TraesCS2D01G087300 chr4B 89.091 55 4 2 672 725 37145125 37145072 3.910000e-07 67.6
51 TraesCS2D01G087300 chr4D 91.820 489 38 2 1006 1493 335341236 335340749 0.000000e+00 680.0
52 TraesCS2D01G087300 chr4D 88.696 575 40 15 160 717 368504807 368504241 0.000000e+00 678.0
53 TraesCS2D01G087300 chr4D 79.387 359 55 13 3678 4023 335340293 335339941 1.010000e-57 235.0
54 TraesCS2D01G087300 chr4D 93.939 99 3 3 5668 5764 6267166 6267069 4.880000e-31 147.0
55 TraesCS2D01G087300 chr4D 87.640 89 9 1 5376 5462 493742350 493742438 1.070000e-17 102.0
56 TraesCS2D01G087300 chr4A 91.820 489 38 2 1006 1493 137533666 137534153 0.000000e+00 680.0
57 TraesCS2D01G087300 chr4A 86.775 552 62 7 3749 4297 232071707 232071164 6.700000e-169 604.0
58 TraesCS2D01G087300 chr4A 86.354 469 56 5 4624 5090 232070979 232070517 6.990000e-139 505.0
59 TraesCS2D01G087300 chr4A 79.598 348 57 7 3678 4014 137534895 137535239 2.820000e-58 237.0
60 TraesCS2D01G087300 chr4A 83.004 253 24 10 4334 4584 232071213 232070978 1.710000e-50 211.0
61 TraesCS2D01G087300 chr7A 90.643 513 39 8 160 669 411539080 411538574 0.000000e+00 673.0
62 TraesCS2D01G087300 chr7A 97.436 39 1 0 5426 5464 717239519 717239481 3.910000e-07 67.6
63 TraesCS2D01G087300 chr3D 88.713 567 33 15 160 724 93972420 93971883 0.000000e+00 664.0
64 TraesCS2D01G087300 chr5B 88.649 555 46 11 160 710 571508165 571508706 0.000000e+00 660.0
65 TraesCS2D01G087300 chr5B 88.235 85 8 1 5380 5462 322144416 322144332 3.850000e-17 100.0
66 TraesCS2D01G087300 chr3B 98.370 184 2 1 1 183 201507028 201506845 7.560000e-84 322.0
67 TraesCS2D01G087300 chr3B 83.429 350 36 13 183 530 60858796 60858467 7.610000e-79 305.0
68 TraesCS2D01G087300 chr3B 95.050 101 4 1 2983 3083 141864627 141864528 2.260000e-34 158.0
69 TraesCS2D01G087300 chr3B 88.393 112 9 4 3356 3465 578763016 578763125 1.370000e-26 132.0
70 TraesCS2D01G087300 chr1A 99.435 177 1 0 1 177 256025717 256025893 7.560000e-84 322.0
71 TraesCS2D01G087300 chr1A 97.727 88 1 1 5680 5766 490796259 490796172 3.770000e-32 150.0
72 TraesCS2D01G087300 chrUn 99.435 177 0 1 1 177 53261189 53261364 2.720000e-83 320.0
73 TraesCS2D01G087300 chrUn 97.838 185 2 1 1 183 404958688 404958504 9.780000e-83 318.0
74 TraesCS2D01G087300 chrUn 98.870 177 2 0 1 177 317472738 317472914 3.520000e-82 316.0
75 TraesCS2D01G087300 chr5D 98.870 177 1 1 1 177 6207372 6207547 1.260000e-81 315.0
76 TraesCS2D01G087300 chr5D 89.720 107 10 1 3357 3462 371860716 371860610 1.060000e-27 135.0
77 TraesCS2D01G087300 chr5D 85.882 85 11 1 5380 5463 482013904 482013988 8.340000e-14 89.8
78 TraesCS2D01G087300 chr5D 97.674 43 1 0 5421 5463 415263911 415263953 2.340000e-09 75.0
79 TraesCS2D01G087300 chr1D 97.814 183 3 1 1 183 254490150 254489969 1.260000e-81 315.0
80 TraesCS2D01G087300 chr1D 98.901 91 1 0 2993 3083 12547010 12546920 4.850000e-36 163.0
81 TraesCS2D01G087300 chr6D 97.938 97 1 1 2994 3089 6507759 6507663 3.750000e-37 167.0
82 TraesCS2D01G087300 chr6D 91.589 107 4 5 5663 5768 20807726 20807624 6.310000e-30 143.0
83 TraesCS2D01G087300 chr6D 88.496 113 10 3 3355 3465 90111258 90111147 3.800000e-27 134.0
84 TraesCS2D01G087300 chr6D 87.826 115 12 2 3349 3462 391925872 391925985 3.800000e-27 134.0
85 TraesCS2D01G087300 chr6D 95.918 49 1 1 673 720 455296088 455296040 1.810000e-10 78.7
86 TraesCS2D01G087300 chr6A 97.849 93 1 1 2995 3086 68511339 68511247 6.270000e-35 159.0
87 TraesCS2D01G087300 chr6A 95.960 99 2 1 2992 3088 553003282 553003184 6.270000e-35 159.0
88 TraesCS2D01G087300 chr6A 95.918 98 2 2 2984 3080 1841119 1841215 2.260000e-34 158.0
89 TraesCS2D01G087300 chr1B 96.809 94 1 2 5671 5764 376074233 376074324 8.110000e-34 156.0
90 TraesCS2D01G087300 chr1B 86.667 90 9 2 5380 5467 7291987 7292075 4.990000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G087300 chr2D 37532500 37538543 6043 False 3930.666667 11162 100.000000 1 6044 3 chr2D.!!$F6 6043
1 TraesCS2D01G087300 chr2D 651641910 651642454 544 False 867.000000 867 95.421000 181 724 1 chr2D.!!$F5 543
2 TraesCS2D01G087300 chr2D 37925942 37926460 518 False 442.000000 442 82.709000 181 722 1 chr2D.!!$F1 541
3 TraesCS2D01G087300 chr2A 42397549 42405938 8389 False 560.681250 3297 91.996062 720 5943 16 chr2A.!!$F3 5223
4 TraesCS2D01G087300 chr2B 65313562 65317991 4429 False 867.750000 1439 90.342500 723 5755 4 chr2B.!!$F4 5032
5 TraesCS2D01G087300 chr2B 723051124 723051662 538 False 612.000000 612 87.057000 160 720 1 chr2B.!!$F3 560
6 TraesCS2D01G087300 chr7D 87755550 87756254 704 True 1122.000000 1122 95.159000 1 720 1 chr7D.!!$R1 719
7 TraesCS2D01G087300 chr7D 122527028 122527533 505 False 830.000000 830 96.252000 181 686 1 chr7D.!!$F1 505
8 TraesCS2D01G087300 chr7D 134489234 134489751 517 True 316.000000 316 78.584000 184 715 1 chr7D.!!$R2 531
9 TraesCS2D01G087300 chr6B 345630813 345631339 526 False 741.000000 741 91.897000 160 699 1 chr6B.!!$F1 539
10 TraesCS2D01G087300 chr4B 413490739 413492043 1304 True 467.500000 702 85.721000 1006 4023 2 chr4B.!!$R2 3017
11 TraesCS2D01G087300 chr4D 368504241 368504807 566 True 678.000000 678 88.696000 160 717 1 chr4D.!!$R2 557
12 TraesCS2D01G087300 chr4D 335339941 335341236 1295 True 457.500000 680 85.603500 1006 4023 2 chr4D.!!$R3 3017
13 TraesCS2D01G087300 chr4A 137533666 137535239 1573 False 458.500000 680 85.709000 1006 4014 2 chr4A.!!$F1 3008
14 TraesCS2D01G087300 chr4A 232070517 232071707 1190 True 440.000000 604 85.377667 3749 5090 3 chr4A.!!$R1 1341
15 TraesCS2D01G087300 chr7A 411538574 411539080 506 True 673.000000 673 90.643000 160 669 1 chr7A.!!$R1 509
16 TraesCS2D01G087300 chr3D 93971883 93972420 537 True 664.000000 664 88.713000 160 724 1 chr3D.!!$R1 564
17 TraesCS2D01G087300 chr5B 571508165 571508706 541 False 660.000000 660 88.649000 160 710 1 chr5B.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 880 0.249398 AACCTGTATCCACACGAGGC 59.751 55.0 0.00 0.00 0.00 4.70 F
1567 2092 0.233332 GCTCGTAATTGCTCGATGGC 59.767 55.0 0.00 0.00 35.57 4.40 F
1636 2161 0.395173 ACTTCGGGCAGGTTGTTTGT 60.395 50.0 0.00 0.00 0.00 2.83 F
1638 2163 0.457851 TTCGGGCAGGTTGTTTGTTG 59.542 50.0 0.00 0.00 0.00 3.33 F
2258 3204 0.753848 TCGCCACCTGACCGATATGA 60.754 55.0 0.00 0.00 0.00 2.15 F
2973 3957 0.322187 AGTGTACCGTTGATTGGGCC 60.322 55.0 0.00 0.00 0.00 5.80 F
2978 3962 0.623723 ACCGTTGATTGGGCCTATGT 59.376 50.0 4.86 0.00 0.00 2.29 F
3700 5219 1.225376 TGACTAAAGTTGTGCCGGCG 61.225 55.0 23.90 6.26 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 3183 0.318441 ATATCGGTCAGGTGGCGATG 59.682 55.000 0.00 0.00 0.00 3.84 R
2954 3938 0.322187 GGCCCAATCAACGGTACACT 60.322 55.000 0.00 0.00 0.00 3.55 R
2955 3939 0.322187 AGGCCCAATCAACGGTACAC 60.322 55.000 0.00 0.00 0.00 2.90 R
2959 3943 0.623723 ACATAGGCCCAATCAACGGT 59.376 50.000 0.00 0.00 0.00 4.83 R
3593 4936 1.216175 ACCATACTGCCAATCTGCCAT 59.784 47.619 0.00 0.00 0.00 4.40 R
4941 6489 0.177604 CCTCCTCACCTGCTAGCTTG 59.822 60.000 17.23 10.47 0.00 4.01 R
4977 6525 0.181587 CAGAGTCCTCCTCCTCGCTA 59.818 60.000 0.00 0.00 41.47 4.26 R
5615 7189 1.139058 ACGAAGCAGAAGACAACACCT 59.861 47.619 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 178 8.103948 AGTGTAAAAGAAAGTGGATTCATCAG 57.896 34.615 0.00 0.00 0.00 2.90
594 630 3.156714 TGACCAAGGCGGACACAT 58.843 55.556 0.00 0.00 34.28 3.21
618 654 8.802267 CATGAGGAGGTAATTTTTAGTTTTGGA 58.198 33.333 0.00 0.00 0.00 3.53
804 880 0.249398 AACCTGTATCCACACGAGGC 59.751 55.000 0.00 0.00 0.00 4.70
816 892 2.348104 ACGAGGCTGGACACGCATA 61.348 57.895 2.65 0.00 0.00 3.14
838 914 2.226912 CCCGTTTGGCGTCTTCATAAAA 59.773 45.455 0.00 0.00 39.32 1.52
841 917 3.242518 GTTTGGCGTCTTCATAAAAGGC 58.757 45.455 0.00 0.00 0.00 4.35
1107 1618 3.900892 ATGGGCGCCTACGTCTCG 61.901 66.667 28.56 0.00 45.32 4.04
1552 2077 2.506061 CCCTCCCCTCATCTGCTCG 61.506 68.421 0.00 0.00 0.00 5.03
1566 2091 1.524355 CTGCTCGTAATTGCTCGATGG 59.476 52.381 0.00 0.00 35.57 3.51
1567 2092 0.233332 GCTCGTAATTGCTCGATGGC 59.767 55.000 0.00 0.00 35.57 4.40
1578 2103 2.872245 TGCTCGATGGCTAATTAACTGC 59.128 45.455 0.00 0.00 0.00 4.40
1604 2129 2.386661 ATTGGGTGTACTCGAAGCAG 57.613 50.000 0.00 0.00 0.00 4.24
1635 2160 1.600023 TACTTCGGGCAGGTTGTTTG 58.400 50.000 0.00 0.00 0.00 2.93
1636 2161 0.395173 ACTTCGGGCAGGTTGTTTGT 60.395 50.000 0.00 0.00 0.00 2.83
1637 2162 0.744281 CTTCGGGCAGGTTGTTTGTT 59.256 50.000 0.00 0.00 0.00 2.83
1638 2163 0.457851 TTCGGGCAGGTTGTTTGTTG 59.542 50.000 0.00 0.00 0.00 3.33
1654 2179 9.991388 GTTGTTTGTTGTATAACTTGACACTAA 57.009 29.630 3.89 0.00 37.68 2.24
1702 2227 7.882179 ACATGTGTTTTTCAAGTAGGTATTCC 58.118 34.615 0.00 0.00 0.00 3.01
1705 2230 9.802039 ATGTGTTTTTCAAGTAGGTATTCCTTA 57.198 29.630 0.00 0.00 42.12 2.69
1728 2253 6.651975 AGTTAGTAGTACTGCAGTCTGTTT 57.348 37.500 25.56 10.32 0.00 2.83
1745 2270 8.237267 CAGTCTGTTTAATTTTGTCCTGTATCC 58.763 37.037 0.00 0.00 0.00 2.59
1841 2396 9.277783 CTTTGGATTAGTCGATTCAAGGATATT 57.722 33.333 0.00 0.00 0.00 1.28
1906 2462 3.788797 GCTTGGTTCTTTGTGACTGTTCG 60.789 47.826 0.00 0.00 0.00 3.95
1924 2480 4.393778 TCGTCCTGACCCCCTCCC 62.394 72.222 0.00 0.00 0.00 4.30
1925 2481 4.715130 CGTCCTGACCCCCTCCCA 62.715 72.222 0.00 0.00 0.00 4.37
1944 2500 2.960170 CAACTGCTCCTTGCTGCC 59.040 61.111 0.00 0.00 43.25 4.85
2071 3017 1.411246 ACTGCCTACGTGTGTTTCTCA 59.589 47.619 0.00 0.00 0.00 3.27
2072 3018 2.061773 CTGCCTACGTGTGTTTCTCAG 58.938 52.381 0.00 0.00 0.00 3.35
2073 3019 1.270094 TGCCTACGTGTGTTTCTCAGG 60.270 52.381 0.00 0.00 0.00 3.86
2163 3109 3.179443 TCTCGGCCAGTTGATTGATAC 57.821 47.619 2.24 0.00 0.00 2.24
2166 3112 3.270027 TCGGCCAGTTGATTGATACTTG 58.730 45.455 2.24 0.00 0.00 3.16
2167 3113 2.355756 CGGCCAGTTGATTGATACTTGG 59.644 50.000 2.24 0.00 0.00 3.61
2168 3114 3.356290 GGCCAGTTGATTGATACTTGGT 58.644 45.455 0.00 0.00 0.00 3.67
2175 3121 4.860802 TGATTGATACTTGGTGGGTCAT 57.139 40.909 0.00 0.00 0.00 3.06
2198 3144 8.085909 TCATCGAATAGCCGATTAACTGATTTA 58.914 33.333 0.00 0.00 45.87 1.40
2200 3146 8.462143 TCGAATAGCCGATTAACTGATTTATC 57.538 34.615 0.00 0.00 33.14 1.75
2201 3147 8.085909 TCGAATAGCCGATTAACTGATTTATCA 58.914 33.333 0.00 0.00 33.14 2.15
2236 3182 2.480759 CCGATTCGCCTATATTACCCCG 60.481 54.545 0.00 0.00 0.00 5.73
2237 3183 2.547826 GATTCGCCTATATTACCCCGC 58.452 52.381 0.00 0.00 0.00 6.13
2238 3184 1.340088 TTCGCCTATATTACCCCGCA 58.660 50.000 0.00 0.00 0.00 5.69
2258 3204 0.753848 TCGCCACCTGACCGATATGA 60.754 55.000 0.00 0.00 0.00 2.15
2264 3210 1.757118 ACCTGACCGATATGACACCAG 59.243 52.381 0.00 0.00 0.00 4.00
2271 3217 2.359848 CCGATATGACACCAGTTACCGA 59.640 50.000 0.00 0.00 0.00 4.69
2277 3223 3.638860 TGACACCAGTTACCGATATCCT 58.361 45.455 0.00 0.00 0.00 3.24
2299 3245 2.477845 ACAATGAATTTTGCCCTGCC 57.522 45.000 0.00 0.00 0.00 4.85
2390 3339 7.539712 TGTGCATAGAATTAGTAGCTTCAAC 57.460 36.000 0.00 0.00 0.00 3.18
2391 3340 7.102993 TGTGCATAGAATTAGTAGCTTCAACA 58.897 34.615 0.00 0.00 0.00 3.33
2400 3354 6.633500 TTAGTAGCTTCAACATGTTGCTTT 57.367 33.333 29.84 17.94 40.24 3.51
2420 3374 8.523915 TGCTTTGAATAGGTTCATTGACATAT 57.476 30.769 0.00 0.00 43.49 1.78
2462 3416 9.994432 CTTCATTCTTTATGTACTTAAGCTTGG 57.006 33.333 9.86 4.42 35.64 3.61
2477 3431 3.190738 TTGGTGGCCAGGAGGTTCG 62.191 63.158 5.11 0.00 33.81 3.95
2486 3440 3.459386 AGGAGGTTCGTTCCTGACT 57.541 52.632 5.95 2.43 43.38 3.41
2584 3538 1.429930 TTCACTTCAGGCTGGTGGTA 58.570 50.000 19.43 8.89 0.00 3.25
2611 3595 6.201425 TGTTAGGACGTTTACATGTGTTTCTC 59.799 38.462 9.11 0.00 0.00 2.87
2612 3596 4.699637 AGGACGTTTACATGTGTTTCTCA 58.300 39.130 9.11 0.00 0.00 3.27
2648 3632 8.671384 TGTTGCTAGTACAGTCTGTTAATTTT 57.329 30.769 11.54 0.00 0.00 1.82
2659 3643 5.769662 AGTCTGTTAATTTTGTCCAGCATCA 59.230 36.000 0.00 0.00 0.00 3.07
2665 3649 7.224362 TGTTAATTTTGTCCAGCATCAAAGTTG 59.776 33.333 0.00 0.00 35.46 3.16
2672 3656 2.101783 CAGCATCAAAGTTGCCCCATA 58.898 47.619 0.00 0.00 41.06 2.74
2797 3781 4.737855 AGCTTGATTATCAGTGTACCGT 57.262 40.909 0.00 0.00 0.00 4.83
2805 3789 2.465860 TCAGTGTACCGTTGATTGGG 57.534 50.000 0.00 0.00 0.00 4.12
2823 3807 5.881923 TTGGGCCTATGTAAACCTAGTAG 57.118 43.478 4.53 0.00 0.00 2.57
2831 3815 8.296000 GCCTATGTAAACCTAGTAGCTTAGTAC 58.704 40.741 0.00 0.00 0.00 2.73
2835 3819 6.830838 TGTAAACCTAGTAGCTTAGTACTCCC 59.169 42.308 0.00 0.00 34.91 4.30
2836 3820 5.730633 AACCTAGTAGCTTAGTACTCCCT 57.269 43.478 0.00 0.00 34.91 4.20
2837 3821 5.308976 ACCTAGTAGCTTAGTACTCCCTC 57.691 47.826 0.00 0.00 34.91 4.30
2838 3822 4.977090 ACCTAGTAGCTTAGTACTCCCTCT 59.023 45.833 0.00 0.00 34.91 3.69
2839 3823 5.163174 ACCTAGTAGCTTAGTACTCCCTCTG 60.163 48.000 0.00 0.00 34.91 3.35
2840 3824 4.866327 AGTAGCTTAGTACTCCCTCTGT 57.134 45.455 0.00 0.00 0.00 3.41
2842 3826 6.324601 AGTAGCTTAGTACTCCCTCTGTAA 57.675 41.667 0.00 0.00 0.00 2.41
2843 3827 6.729428 AGTAGCTTAGTACTCCCTCTGTAAA 58.271 40.000 0.00 0.00 0.00 2.01
2844 3828 5.918426 AGCTTAGTACTCCCTCTGTAAAC 57.082 43.478 0.00 0.00 0.00 2.01
2845 3829 5.581975 AGCTTAGTACTCCCTCTGTAAACT 58.418 41.667 0.00 0.00 0.00 2.66
2846 3830 6.729428 AGCTTAGTACTCCCTCTGTAAACTA 58.271 40.000 0.00 0.00 0.00 2.24
2847 3831 7.180663 AGCTTAGTACTCCCTCTGTAAACTAA 58.819 38.462 0.00 0.00 0.00 2.24
2848 3832 7.840210 AGCTTAGTACTCCCTCTGTAAACTAAT 59.160 37.037 0.00 0.00 0.00 1.73
2849 3833 8.476447 GCTTAGTACTCCCTCTGTAAACTAATT 58.524 37.037 0.00 0.00 0.00 1.40
2851 3835 9.765295 TTAGTACTCCCTCTGTAAACTAATTCT 57.235 33.333 0.00 0.00 0.00 2.40
2852 3836 8.667592 AGTACTCCCTCTGTAAACTAATTCTT 57.332 34.615 0.00 0.00 0.00 2.52
2853 3837 9.765295 AGTACTCCCTCTGTAAACTAATTCTTA 57.235 33.333 0.00 0.00 0.00 2.10
2856 3840 9.765295 ACTCCCTCTGTAAACTAATTCTTAGTA 57.235 33.333 0.28 0.00 45.33 1.82
2858 3842 8.975295 TCCCTCTGTAAACTAATTCTTAGTACC 58.025 37.037 0.28 0.00 45.33 3.34
2859 3843 8.979534 CCCTCTGTAAACTAATTCTTAGTACCT 58.020 37.037 0.28 0.00 45.33 3.08
2860 3844 9.804758 CCTCTGTAAACTAATTCTTAGTACCTG 57.195 37.037 0.28 0.00 45.33 4.00
2867 3851 9.856162 AAACTAATTCTTAGTACCTGTTTTGGA 57.144 29.630 0.28 0.00 45.33 3.53
2868 3852 9.503399 AACTAATTCTTAGTACCTGTTTTGGAG 57.497 33.333 0.28 0.00 45.33 3.86
2869 3853 6.819397 AATTCTTAGTACCTGTTTTGGAGC 57.181 37.500 0.00 0.00 0.00 4.70
2870 3854 4.967084 TCTTAGTACCTGTTTTGGAGCA 57.033 40.909 0.00 0.00 0.00 4.26
2871 3855 5.499004 TCTTAGTACCTGTTTTGGAGCAT 57.501 39.130 0.00 0.00 0.00 3.79
2872 3856 5.245531 TCTTAGTACCTGTTTTGGAGCATG 58.754 41.667 0.00 0.00 0.00 4.06
2873 3857 3.508845 AGTACCTGTTTTGGAGCATGT 57.491 42.857 0.00 0.00 0.00 3.21
2874 3858 4.634012 AGTACCTGTTTTGGAGCATGTA 57.366 40.909 0.00 0.00 0.00 2.29
2875 3859 4.324267 AGTACCTGTTTTGGAGCATGTAC 58.676 43.478 0.00 0.00 37.91 2.90
2876 3860 3.508845 ACCTGTTTTGGAGCATGTACT 57.491 42.857 0.00 0.00 0.00 2.73
2877 3861 3.832527 ACCTGTTTTGGAGCATGTACTT 58.167 40.909 0.00 0.00 0.00 2.24
2878 3862 4.980573 ACCTGTTTTGGAGCATGTACTTA 58.019 39.130 0.00 0.00 0.00 2.24
2879 3863 5.381757 ACCTGTTTTGGAGCATGTACTTAA 58.618 37.500 0.00 0.00 0.00 1.85
2880 3864 6.010219 ACCTGTTTTGGAGCATGTACTTAAT 58.990 36.000 0.00 0.00 0.00 1.40
2881 3865 6.493458 ACCTGTTTTGGAGCATGTACTTAATT 59.507 34.615 0.00 0.00 0.00 1.40
2882 3866 7.015195 ACCTGTTTTGGAGCATGTACTTAATTT 59.985 33.333 0.00 0.00 0.00 1.82
2883 3867 7.542130 CCTGTTTTGGAGCATGTACTTAATTTC 59.458 37.037 0.00 0.00 0.00 2.17
2884 3868 7.375053 TGTTTTGGAGCATGTACTTAATTTCC 58.625 34.615 0.00 0.00 0.00 3.13
2885 3869 7.232534 TGTTTTGGAGCATGTACTTAATTTCCT 59.767 33.333 0.00 0.00 0.00 3.36
2886 3870 8.736244 GTTTTGGAGCATGTACTTAATTTCCTA 58.264 33.333 0.00 0.00 0.00 2.94
2887 3871 8.871629 TTTGGAGCATGTACTTAATTTCCTAA 57.128 30.769 0.00 0.00 0.00 2.69
2888 3872 9.474313 TTTGGAGCATGTACTTAATTTCCTAAT 57.526 29.630 0.00 0.00 0.00 1.73
2889 3873 8.450578 TGGAGCATGTACTTAATTTCCTAATG 57.549 34.615 0.00 0.00 0.00 1.90
2890 3874 8.052748 TGGAGCATGTACTTAATTTCCTAATGT 58.947 33.333 0.00 0.00 0.00 2.71
2891 3875 8.345565 GGAGCATGTACTTAATTTCCTAATGTG 58.654 37.037 0.00 0.00 0.00 3.21
2892 3876 8.807948 AGCATGTACTTAATTTCCTAATGTGT 57.192 30.769 0.00 0.00 0.00 3.72
2893 3877 9.899661 AGCATGTACTTAATTTCCTAATGTGTA 57.100 29.630 0.00 0.00 0.00 2.90
2924 3908 7.440523 AAGTCGATTTAAGGATATCCATTGC 57.559 36.000 23.81 6.87 38.89 3.56
2925 3909 6.773638 AGTCGATTTAAGGATATCCATTGCT 58.226 36.000 23.81 10.16 38.89 3.91
2926 3910 7.227156 AGTCGATTTAAGGATATCCATTGCTT 58.773 34.615 23.81 11.03 38.89 3.91
2927 3911 7.389053 AGTCGATTTAAGGATATCCATTGCTTC 59.611 37.037 23.81 11.45 38.89 3.86
2928 3912 7.173218 GTCGATTTAAGGATATCCATTGCTTCA 59.827 37.037 23.81 0.00 38.89 3.02
2929 3913 7.719193 TCGATTTAAGGATATCCATTGCTTCAA 59.281 33.333 23.81 7.08 38.89 2.69
2930 3914 8.352201 CGATTTAAGGATATCCATTGCTTCAAA 58.648 33.333 23.81 8.43 38.89 2.69
2934 3918 6.830873 AGGATATCCATTGCTTCAAATAGC 57.169 37.500 23.81 0.00 38.98 2.97
2935 3919 6.550163 AGGATATCCATTGCTTCAAATAGCT 58.450 36.000 23.81 0.00 39.15 3.32
2936 3920 7.008941 AGGATATCCATTGCTTCAAATAGCTT 58.991 34.615 23.81 0.00 39.15 3.74
2937 3921 8.166061 AGGATATCCATTGCTTCAAATAGCTTA 58.834 33.333 23.81 0.00 39.15 3.09
2938 3922 8.796475 GGATATCCATTGCTTCAAATAGCTTAA 58.204 33.333 17.34 0.00 37.75 1.85
2944 3928 8.758715 CCATTGCTTCAAATAGCTTAATTTAGC 58.241 33.333 8.39 8.39 41.76 3.09
2962 3946 7.715265 ATTTAGCTTGATTATCAGTGTACCG 57.285 36.000 0.00 0.00 0.00 4.02
2963 3947 4.737855 AGCTTGATTATCAGTGTACCGT 57.262 40.909 0.00 0.00 0.00 4.83
2964 3948 5.086104 AGCTTGATTATCAGTGTACCGTT 57.914 39.130 0.00 0.00 0.00 4.44
2965 3949 4.870426 AGCTTGATTATCAGTGTACCGTTG 59.130 41.667 0.00 0.00 0.00 4.10
2966 3950 4.868171 GCTTGATTATCAGTGTACCGTTGA 59.132 41.667 0.00 0.00 0.00 3.18
2967 3951 5.523916 GCTTGATTATCAGTGTACCGTTGAT 59.476 40.000 0.00 8.36 35.79 2.57
2968 3952 6.037172 GCTTGATTATCAGTGTACCGTTGATT 59.963 38.462 8.54 0.00 33.81 2.57
2969 3953 6.902224 TGATTATCAGTGTACCGTTGATTG 57.098 37.500 8.54 0.00 33.81 2.67
2970 3954 5.815222 TGATTATCAGTGTACCGTTGATTGG 59.185 40.000 8.54 0.00 33.81 3.16
2971 3955 2.465860 TCAGTGTACCGTTGATTGGG 57.534 50.000 0.00 0.00 0.00 4.12
2972 3956 0.802494 CAGTGTACCGTTGATTGGGC 59.198 55.000 0.00 0.00 0.00 5.36
2973 3957 0.322187 AGTGTACCGTTGATTGGGCC 60.322 55.000 0.00 0.00 0.00 5.80
2974 3958 0.322187 GTGTACCGTTGATTGGGCCT 60.322 55.000 4.53 0.00 0.00 5.19
2975 3959 1.065998 GTGTACCGTTGATTGGGCCTA 60.066 52.381 4.53 0.00 0.00 3.93
2976 3960 1.841277 TGTACCGTTGATTGGGCCTAT 59.159 47.619 4.53 1.33 0.00 2.57
2977 3961 2.218603 GTACCGTTGATTGGGCCTATG 58.781 52.381 4.86 0.00 0.00 2.23
2978 3962 0.623723 ACCGTTGATTGGGCCTATGT 59.376 50.000 4.86 0.00 0.00 2.29
2979 3963 1.841277 ACCGTTGATTGGGCCTATGTA 59.159 47.619 4.86 0.00 0.00 2.29
2980 3964 2.240160 ACCGTTGATTGGGCCTATGTAA 59.760 45.455 4.86 0.00 0.00 2.41
2981 3965 3.283751 CCGTTGATTGGGCCTATGTAAA 58.716 45.455 4.86 0.00 0.00 2.01
2982 3966 3.066203 CCGTTGATTGGGCCTATGTAAAC 59.934 47.826 4.86 6.47 0.00 2.01
2983 3967 3.066203 CGTTGATTGGGCCTATGTAAACC 59.934 47.826 4.86 0.00 0.00 3.27
2984 3968 4.278310 GTTGATTGGGCCTATGTAAACCT 58.722 43.478 4.86 0.00 0.00 3.50
2985 3969 5.442391 GTTGATTGGGCCTATGTAAACCTA 58.558 41.667 4.86 0.00 0.00 3.08
2986 3970 5.304686 TGATTGGGCCTATGTAAACCTAG 57.695 43.478 4.86 0.00 0.00 3.02
2987 3971 4.724798 TGATTGGGCCTATGTAAACCTAGT 59.275 41.667 4.86 0.00 0.00 2.57
2988 3972 5.906495 TGATTGGGCCTATGTAAACCTAGTA 59.094 40.000 4.86 0.00 0.00 1.82
2989 3973 5.881923 TTGGGCCTATGTAAACCTAGTAG 57.118 43.478 4.53 0.00 0.00 2.57
2990 3974 3.644738 TGGGCCTATGTAAACCTAGTAGC 59.355 47.826 4.53 0.00 0.00 3.58
2991 3975 3.902467 GGGCCTATGTAAACCTAGTAGCT 59.098 47.826 0.84 0.00 0.00 3.32
2992 3976 4.347292 GGGCCTATGTAAACCTAGTAGCTT 59.653 45.833 0.84 0.00 0.00 3.74
2993 3977 5.541484 GGGCCTATGTAAACCTAGTAGCTTA 59.459 44.000 0.84 0.00 0.00 3.09
2994 3978 6.295180 GGGCCTATGTAAACCTAGTAGCTTAG 60.295 46.154 0.84 0.00 0.00 2.18
2995 3979 6.267242 GGCCTATGTAAACCTAGTAGCTTAGT 59.733 42.308 0.00 0.00 0.00 2.24
2996 3980 7.449704 GGCCTATGTAAACCTAGTAGCTTAGTA 59.550 40.741 0.00 0.00 0.00 1.82
2997 3981 8.296000 GCCTATGTAAACCTAGTAGCTTAGTAC 58.704 40.741 0.00 0.00 0.00 2.73
2998 3982 9.571816 CCTATGTAAACCTAGTAGCTTAGTACT 57.428 37.037 0.00 0.00 37.09 2.73
3000 3984 7.872113 TGTAAACCTAGTAGCTTAGTACTCC 57.128 40.000 0.00 0.00 34.91 3.85
3001 3985 6.830838 TGTAAACCTAGTAGCTTAGTACTCCC 59.169 42.308 0.00 0.00 34.91 4.30
3002 3986 5.730633 AACCTAGTAGCTTAGTACTCCCT 57.269 43.478 0.00 0.00 34.91 4.20
3003 3987 5.308976 ACCTAGTAGCTTAGTACTCCCTC 57.691 47.826 0.00 0.00 34.91 4.30
3004 3988 4.977090 ACCTAGTAGCTTAGTACTCCCTCT 59.023 45.833 0.00 0.00 34.91 3.69
3005 3989 5.163174 ACCTAGTAGCTTAGTACTCCCTCTG 60.163 48.000 0.00 0.00 34.91 3.35
3006 3990 4.866327 AGTAGCTTAGTACTCCCTCTGT 57.134 45.455 0.00 0.00 0.00 3.41
3007 3991 5.972327 AGTAGCTTAGTACTCCCTCTGTA 57.028 43.478 0.00 0.00 0.00 2.74
3008 3992 6.324601 AGTAGCTTAGTACTCCCTCTGTAA 57.675 41.667 0.00 0.00 0.00 2.41
3009 3993 6.729428 AGTAGCTTAGTACTCCCTCTGTAAA 58.271 40.000 0.00 0.00 0.00 2.01
3010 3994 5.918426 AGCTTAGTACTCCCTCTGTAAAC 57.082 43.478 0.00 0.00 0.00 2.01
3011 3995 5.581975 AGCTTAGTACTCCCTCTGTAAACT 58.418 41.667 0.00 0.00 0.00 2.66
3012 3996 6.729428 AGCTTAGTACTCCCTCTGTAAACTA 58.271 40.000 0.00 0.00 0.00 2.24
3013 3997 7.180663 AGCTTAGTACTCCCTCTGTAAACTAA 58.819 38.462 0.00 0.00 0.00 2.24
3014 3998 7.840210 AGCTTAGTACTCCCTCTGTAAACTAAT 59.160 37.037 0.00 0.00 0.00 1.73
3015 3999 9.129532 GCTTAGTACTCCCTCTGTAAACTAATA 57.870 37.037 0.00 0.00 0.00 0.98
3022 4006 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3023 4007 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3024 4008 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3025 4009 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3026 4010 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3041 4025 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3042 4026 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3043 4027 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
3044 4028 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
3045 4029 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
3046 4030 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
3047 4031 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
3074 4058 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
3075 4059 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
3076 4060 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
3077 4061 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
3078 4062 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
3079 4063 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3084 4068 6.610075 TTAGTTTACGGAGGGAGTATTTGT 57.390 37.500 0.00 0.00 0.00 2.83
3085 4069 7.716799 TTAGTTTACGGAGGGAGTATTTGTA 57.283 36.000 0.00 0.00 0.00 2.41
3086 4070 6.610075 AGTTTACGGAGGGAGTATTTGTAA 57.390 37.500 0.00 0.00 0.00 2.41
3087 4071 6.637657 AGTTTACGGAGGGAGTATTTGTAAG 58.362 40.000 0.00 0.00 0.00 2.34
3088 4072 3.538634 ACGGAGGGAGTATTTGTAAGC 57.461 47.619 0.00 0.00 0.00 3.09
3089 4073 2.169978 ACGGAGGGAGTATTTGTAAGCC 59.830 50.000 0.00 0.00 0.00 4.35
3230 4215 3.119531 TCAGTTAATTTTGCCCTGCATCG 60.120 43.478 0.00 0.00 38.76 3.84
3343 4329 5.799681 ATTTTGTTGCTTCAAACTGGTTG 57.200 34.783 0.00 0.00 37.10 3.77
3382 4368 3.069158 CCCTCCGATCCGTATTACTTGTT 59.931 47.826 0.00 0.00 0.00 2.83
3409 4395 6.273825 TCAAGCGGATGTATCTAGAAGTTTC 58.726 40.000 0.00 0.00 0.00 2.78
3589 4932 3.435327 TGGGTTTCATTCAGATTCGTTCG 59.565 43.478 0.00 0.00 0.00 3.95
3593 4936 5.163893 GGTTTCATTCAGATTCGTTCGCTTA 60.164 40.000 0.00 0.00 0.00 3.09
3700 5219 1.225376 TGACTAAAGTTGTGCCGGCG 61.225 55.000 23.90 6.26 0.00 6.46
3766 5285 1.701847 AGAATGACACCACAGCCTCTT 59.298 47.619 0.00 0.00 0.00 2.85
3899 5433 7.067615 TGGTTGTGAGTTGCTAATTCTGTTTTA 59.932 33.333 0.00 0.00 0.00 1.52
4151 5687 9.946165 GAGGAGTAATTTAAATAATGTTTCGGG 57.054 33.333 0.01 0.00 0.00 5.14
4384 5921 8.956426 TCATTAAAATTCAGATACCCTTGTGTC 58.044 33.333 0.00 0.00 33.15 3.67
4410 5947 6.830912 AGTATTTCTATGATGCAAGGCAGTA 58.169 36.000 0.00 0.00 43.65 2.74
4604 6144 4.084537 GCCCATATCTCGTTGTGTTATTCG 60.085 45.833 0.00 0.00 0.00 3.34
4651 6191 7.042321 AGTGACATGAAATTTGCTGATTTTGTG 60.042 33.333 0.00 7.69 29.75 3.33
4664 6204 5.463061 GCTGATTTTGTGTATTGCTGTTGTT 59.537 36.000 0.00 0.00 0.00 2.83
4807 6349 4.761227 TCTGTGCTCAACAAATAATCAGCA 59.239 37.500 0.00 0.00 38.67 4.41
4845 6387 3.622163 CGATTCAGAGATCTGCAAGCTTT 59.378 43.478 0.00 0.00 43.46 3.51
4846 6388 4.094590 CGATTCAGAGATCTGCAAGCTTTT 59.905 41.667 0.00 0.00 43.46 2.27
4850 6392 5.174395 TCAGAGATCTGCAAGCTTTTCTAC 58.826 41.667 0.00 0.00 43.46 2.59
4881 6426 5.920273 CCGCCCATGATTCATGTTTTATAAC 59.080 40.000 21.95 4.79 39.94 1.89
4887 6435 8.917088 CCATGATTCATGTTTTATAACTTCCCT 58.083 33.333 21.95 0.00 39.94 4.20
4941 6489 1.272781 CGGACACGATTGAGAAGCTC 58.727 55.000 0.00 0.00 44.60 4.09
5152 6705 1.376609 GGCACGTTGGATGGATGGAC 61.377 60.000 0.00 0.00 0.00 4.02
5157 6710 1.656652 GTTGGATGGATGGACGAGTG 58.343 55.000 0.00 0.00 0.00 3.51
5162 6715 3.195661 GGATGGATGGACGAGTGTTTAC 58.804 50.000 0.00 0.00 0.00 2.01
5241 6794 1.198637 GCTTTTCGCTGAGCACTGATT 59.801 47.619 4.88 0.00 38.73 2.57
5283 6837 4.919754 GCTTTTGCTACCTGTTTTCATCAG 59.080 41.667 0.00 0.00 43.35 2.90
5320 6874 5.933187 TTTTGCTTATCGTTGCTCACTAA 57.067 34.783 0.00 0.00 0.00 2.24
5393 6949 6.546428 TTTGACTATTACTCCCTCTGGAAG 57.454 41.667 0.00 0.00 41.17 3.46
5501 7075 2.808543 GGCTCCGCCTATGATAACTTTG 59.191 50.000 0.00 0.00 46.69 2.77
5516 7090 6.366604 TGATAACTTTGCATGTGCTTGAAATG 59.633 34.615 6.55 0.00 42.66 2.32
5543 7117 3.268013 GCCGAATGCACGCTATATTTT 57.732 42.857 0.00 0.00 40.77 1.82
5551 7125 6.630676 ATGCACGCTATATTTTGTGTTTTG 57.369 33.333 0.00 0.00 34.86 2.44
5553 7127 6.385843 TGCACGCTATATTTTGTGTTTTGAT 58.614 32.000 0.00 0.00 34.86 2.57
5557 7131 7.750458 CACGCTATATTTTGTGTTTTGATGACT 59.250 33.333 0.00 0.00 0.00 3.41
5591 7165 3.183775 ACTGAAATTACGCAACAGACGTC 59.816 43.478 7.70 7.70 43.88 4.34
5594 7168 1.614385 ATTACGCAACAGACGTCTCG 58.386 50.000 16.96 18.36 43.88 4.04
5626 7200 4.142004 ACTTTCTACGTGAGGTGTTGTCTT 60.142 41.667 0.00 0.00 0.00 3.01
5634 7369 1.795286 GAGGTGTTGTCTTCTGCTTCG 59.205 52.381 0.00 0.00 0.00 3.79
5636 7371 2.364324 AGGTGTTGTCTTCTGCTTCGTA 59.636 45.455 0.00 0.00 0.00 3.43
5655 7390 5.949735 TCGTAGCGAATTGATGATATAGCA 58.050 37.500 0.00 0.00 31.06 3.49
5679 7414 7.408123 CAGCTAAATAAGTCTCATTCAGCAAG 58.592 38.462 0.00 0.00 0.00 4.01
5755 7490 1.728490 GATTCCCGGCTGGTGCATTC 61.728 60.000 11.58 0.00 41.91 2.67
5756 7491 2.497792 ATTCCCGGCTGGTGCATTCA 62.498 55.000 11.58 0.00 41.91 2.57
5820 9996 5.565592 TGAAATGATGCGCATACTTTTCT 57.434 34.783 31.63 15.27 35.78 2.52
5822 9998 6.389091 TGAAATGATGCGCATACTTTTCTTT 58.611 32.000 31.63 21.28 35.78 2.52
5850 10026 3.804036 TGCCACGAGAAGAAAGAAAGAA 58.196 40.909 0.00 0.00 0.00 2.52
5851 10027 4.196193 TGCCACGAGAAGAAAGAAAGAAA 58.804 39.130 0.00 0.00 0.00 2.52
5852 10028 4.273480 TGCCACGAGAAGAAAGAAAGAAAG 59.727 41.667 0.00 0.00 0.00 2.62
5854 10031 4.214332 CCACGAGAAGAAAGAAAGAAAGGG 59.786 45.833 0.00 0.00 0.00 3.95
5857 10034 3.501349 AGAAGAAAGAAAGAAAGGGGGC 58.499 45.455 0.00 0.00 0.00 5.80
5944 10374 1.860078 CGGTGTTCGCTTTCTGTCC 59.140 57.895 0.00 0.00 0.00 4.02
5945 10375 0.878523 CGGTGTTCGCTTTCTGTCCA 60.879 55.000 0.00 0.00 0.00 4.02
5946 10376 1.305201 GGTGTTCGCTTTCTGTCCAA 58.695 50.000 0.00 0.00 0.00 3.53
5947 10377 1.002792 GGTGTTCGCTTTCTGTCCAAC 60.003 52.381 0.00 0.00 0.00 3.77
5948 10378 0.934496 TGTTCGCTTTCTGTCCAACG 59.066 50.000 0.00 0.00 0.00 4.10
5949 10379 1.214367 GTTCGCTTTCTGTCCAACGA 58.786 50.000 0.00 0.00 0.00 3.85
5950 10380 1.595794 GTTCGCTTTCTGTCCAACGAA 59.404 47.619 0.00 0.00 37.21 3.85
5951 10381 1.942677 TCGCTTTCTGTCCAACGAAA 58.057 45.000 0.00 0.00 0.00 3.46
5952 10382 1.595794 TCGCTTTCTGTCCAACGAAAC 59.404 47.619 0.00 0.00 0.00 2.78
5953 10383 1.333791 CGCTTTCTGTCCAACGAAACC 60.334 52.381 0.00 0.00 0.00 3.27
5954 10384 1.947456 GCTTTCTGTCCAACGAAACCT 59.053 47.619 0.00 0.00 0.00 3.50
5955 10385 3.135994 GCTTTCTGTCCAACGAAACCTA 58.864 45.455 0.00 0.00 0.00 3.08
5956 10386 3.186613 GCTTTCTGTCCAACGAAACCTAG 59.813 47.826 0.00 0.00 0.00 3.02
5957 10387 2.450609 TCTGTCCAACGAAACCTAGC 57.549 50.000 0.00 0.00 0.00 3.42
5958 10388 1.689813 TCTGTCCAACGAAACCTAGCA 59.310 47.619 0.00 0.00 0.00 3.49
5959 10389 1.798813 CTGTCCAACGAAACCTAGCAC 59.201 52.381 0.00 0.00 0.00 4.40
5960 10390 1.139256 TGTCCAACGAAACCTAGCACA 59.861 47.619 0.00 0.00 0.00 4.57
5961 10391 1.529865 GTCCAACGAAACCTAGCACAC 59.470 52.381 0.00 0.00 0.00 3.82
5962 10392 1.139256 TCCAACGAAACCTAGCACACA 59.861 47.619 0.00 0.00 0.00 3.72
5963 10393 1.944024 CCAACGAAACCTAGCACACAA 59.056 47.619 0.00 0.00 0.00 3.33
5964 10394 2.286772 CCAACGAAACCTAGCACACAAC 60.287 50.000 0.00 0.00 0.00 3.32
5965 10395 2.319136 ACGAAACCTAGCACACAACA 57.681 45.000 0.00 0.00 0.00 3.33
5966 10396 2.634600 ACGAAACCTAGCACACAACAA 58.365 42.857 0.00 0.00 0.00 2.83
5967 10397 3.211045 ACGAAACCTAGCACACAACAAT 58.789 40.909 0.00 0.00 0.00 2.71
5968 10398 3.250040 ACGAAACCTAGCACACAACAATC 59.750 43.478 0.00 0.00 0.00 2.67
5969 10399 3.664276 CGAAACCTAGCACACAACAATCG 60.664 47.826 0.00 0.00 0.00 3.34
5970 10400 2.831685 ACCTAGCACACAACAATCGA 57.168 45.000 0.00 0.00 0.00 3.59
5971 10401 2.413837 ACCTAGCACACAACAATCGAC 58.586 47.619 0.00 0.00 0.00 4.20
5972 10402 1.390123 CCTAGCACACAACAATCGACG 59.610 52.381 0.00 0.00 0.00 5.12
5973 10403 0.787787 TAGCACACAACAATCGACGC 59.212 50.000 0.00 0.00 0.00 5.19
5974 10404 1.157257 AGCACACAACAATCGACGCA 61.157 50.000 0.00 0.00 0.00 5.24
5975 10405 0.316607 GCACACAACAATCGACGCAA 60.317 50.000 0.00 0.00 0.00 4.85
5976 10406 1.385038 CACACAACAATCGACGCAAC 58.615 50.000 0.00 0.00 0.00 4.17
5977 10407 1.010580 ACACAACAATCGACGCAACA 58.989 45.000 0.00 0.00 0.00 3.33
5978 10408 1.003972 ACACAACAATCGACGCAACAG 60.004 47.619 0.00 0.00 0.00 3.16
5979 10409 1.003972 CACAACAATCGACGCAACAGT 60.004 47.619 0.00 0.00 0.00 3.55
5980 10410 1.260561 ACAACAATCGACGCAACAGTC 59.739 47.619 0.00 0.00 37.76 3.51
5981 10411 1.526887 CAACAATCGACGCAACAGTCT 59.473 47.619 0.00 0.00 38.90 3.24
5982 10412 1.139989 ACAATCGACGCAACAGTCTG 58.860 50.000 0.00 0.00 38.90 3.51
5983 10413 0.179240 CAATCGACGCAACAGTCTGC 60.179 55.000 0.00 0.00 38.90 4.26
5984 10414 1.291877 AATCGACGCAACAGTCTGCC 61.292 55.000 0.00 0.00 39.26 4.85
5985 10415 2.159819 ATCGACGCAACAGTCTGCCT 62.160 55.000 0.00 0.00 39.26 4.75
5994 10424 3.713902 CAGTCTGCCTGTGTCCTTT 57.286 52.632 0.00 0.00 36.37 3.11
5995 10425 2.839486 CAGTCTGCCTGTGTCCTTTA 57.161 50.000 0.00 0.00 36.37 1.85
5996 10426 2.417719 CAGTCTGCCTGTGTCCTTTAC 58.582 52.381 0.00 0.00 36.37 2.01
5997 10427 2.037772 CAGTCTGCCTGTGTCCTTTACT 59.962 50.000 0.00 0.00 36.37 2.24
5998 10428 2.706190 AGTCTGCCTGTGTCCTTTACTT 59.294 45.455 0.00 0.00 0.00 2.24
5999 10429 3.136626 AGTCTGCCTGTGTCCTTTACTTT 59.863 43.478 0.00 0.00 0.00 2.66
6000 10430 3.498777 GTCTGCCTGTGTCCTTTACTTTC 59.501 47.826 0.00 0.00 0.00 2.62
6001 10431 2.480419 CTGCCTGTGTCCTTTACTTTCG 59.520 50.000 0.00 0.00 0.00 3.46
6002 10432 1.804748 GCCTGTGTCCTTTACTTTCGG 59.195 52.381 0.00 0.00 0.00 4.30
6003 10433 1.804748 CCTGTGTCCTTTACTTTCGGC 59.195 52.381 0.00 0.00 0.00 5.54
6004 10434 1.804748 CTGTGTCCTTTACTTTCGGCC 59.195 52.381 0.00 0.00 0.00 6.13
6005 10435 1.141254 TGTGTCCTTTACTTTCGGCCA 59.859 47.619 2.24 0.00 0.00 5.36
6006 10436 2.224670 TGTGTCCTTTACTTTCGGCCAT 60.225 45.455 2.24 0.00 0.00 4.40
6007 10437 2.161609 GTGTCCTTTACTTTCGGCCATG 59.838 50.000 2.24 0.00 0.00 3.66
6008 10438 1.743394 GTCCTTTACTTTCGGCCATGG 59.257 52.381 7.63 7.63 0.00 3.66
6009 10439 1.631388 TCCTTTACTTTCGGCCATGGA 59.369 47.619 18.40 0.00 0.00 3.41
6010 10440 2.017049 CCTTTACTTTCGGCCATGGAG 58.983 52.381 18.40 8.79 0.00 3.86
6011 10441 2.618045 CCTTTACTTTCGGCCATGGAGT 60.618 50.000 18.40 12.22 0.00 3.85
6012 10442 2.871096 TTACTTTCGGCCATGGAGTT 57.129 45.000 18.40 0.00 0.00 3.01
6013 10443 2.871096 TACTTTCGGCCATGGAGTTT 57.129 45.000 18.40 0.00 0.00 2.66
6014 10444 1.534729 ACTTTCGGCCATGGAGTTTC 58.465 50.000 18.40 0.00 0.00 2.78
6015 10445 0.447801 CTTTCGGCCATGGAGTTTCG 59.552 55.000 18.40 10.45 0.00 3.46
6016 10446 1.582610 TTTCGGCCATGGAGTTTCGC 61.583 55.000 18.40 0.00 0.00 4.70
6017 10447 2.436646 CGGCCATGGAGTTTCGCT 60.437 61.111 18.40 0.00 0.00 4.93
6018 10448 2.464459 CGGCCATGGAGTTTCGCTC 61.464 63.158 18.40 0.00 43.39 5.03
6019 10449 1.377202 GGCCATGGAGTTTCGCTCA 60.377 57.895 18.40 0.00 45.88 4.26
6020 10450 0.960364 GGCCATGGAGTTTCGCTCAA 60.960 55.000 18.40 0.00 45.88 3.02
6021 10451 0.449388 GCCATGGAGTTTCGCTCAAG 59.551 55.000 18.40 0.00 45.88 3.02
6022 10452 1.813513 CCATGGAGTTTCGCTCAAGT 58.186 50.000 5.56 0.00 45.88 3.16
6023 10453 1.734465 CCATGGAGTTTCGCTCAAGTC 59.266 52.381 5.56 0.00 45.88 3.01
6024 10454 2.416747 CATGGAGTTTCGCTCAAGTCA 58.583 47.619 0.00 0.00 45.88 3.41
6025 10455 2.613026 TGGAGTTTCGCTCAAGTCAA 57.387 45.000 0.00 0.00 45.88 3.18
6026 10456 3.126001 TGGAGTTTCGCTCAAGTCAAT 57.874 42.857 0.00 0.00 45.88 2.57
6027 10457 2.807967 TGGAGTTTCGCTCAAGTCAATG 59.192 45.455 0.00 0.00 45.88 2.82
6028 10458 2.808543 GGAGTTTCGCTCAAGTCAATGT 59.191 45.455 0.00 0.00 45.88 2.71
6029 10459 3.120511 GGAGTTTCGCTCAAGTCAATGTC 60.121 47.826 0.00 0.00 45.88 3.06
6030 10460 3.733337 AGTTTCGCTCAAGTCAATGTCT 58.267 40.909 0.00 0.00 0.00 3.41
6031 10461 3.743396 AGTTTCGCTCAAGTCAATGTCTC 59.257 43.478 0.00 0.00 0.00 3.36
6032 10462 3.385193 TTCGCTCAAGTCAATGTCTCA 57.615 42.857 0.00 0.00 0.00 3.27
6033 10463 2.951726 TCGCTCAAGTCAATGTCTCAG 58.048 47.619 0.00 0.00 0.00 3.35
6034 10464 1.392853 CGCTCAAGTCAATGTCTCAGC 59.607 52.381 2.74 2.74 0.00 4.26
6035 10465 1.736681 GCTCAAGTCAATGTCTCAGCC 59.263 52.381 1.72 0.00 0.00 4.85
6036 10466 2.354259 CTCAAGTCAATGTCTCAGCCC 58.646 52.381 0.00 0.00 0.00 5.19
6037 10467 1.699083 TCAAGTCAATGTCTCAGCCCA 59.301 47.619 0.00 0.00 0.00 5.36
6038 10468 2.306805 TCAAGTCAATGTCTCAGCCCAT 59.693 45.455 0.00 0.00 0.00 4.00
6039 10469 3.519107 TCAAGTCAATGTCTCAGCCCATA 59.481 43.478 0.00 0.00 0.00 2.74
6040 10470 4.164796 TCAAGTCAATGTCTCAGCCCATAT 59.835 41.667 0.00 0.00 0.00 1.78
6041 10471 5.366477 TCAAGTCAATGTCTCAGCCCATATA 59.634 40.000 0.00 0.00 0.00 0.86
6042 10472 5.220710 AGTCAATGTCTCAGCCCATATAC 57.779 43.478 0.00 0.00 0.00 1.47
6043 10473 4.655649 AGTCAATGTCTCAGCCCATATACA 59.344 41.667 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 178 6.449635 TGGTGAACAATGCTTTATATGACC 57.550 37.500 0.00 0.00 0.00 4.02
544 572 3.617531 CGCAAATCTGGTCACTAACTCCT 60.618 47.826 0.00 0.00 0.00 3.69
549 582 5.597806 CCTATACGCAAATCTGGTCACTAA 58.402 41.667 0.00 0.00 0.00 2.24
594 630 7.780745 TGTCCAAAACTAAAAATTACCTCCTCA 59.219 33.333 0.00 0.00 0.00 3.86
804 880 0.672401 AAACGGGTATGCGTGTCCAG 60.672 55.000 0.00 0.00 0.00 3.86
860 936 0.525455 TGCGAATCGACGATGTGGAG 60.525 55.000 11.83 2.87 35.09 3.86
861 937 0.525455 CTGCGAATCGACGATGTGGA 60.525 55.000 11.83 7.32 35.09 4.02
867 943 2.277310 CGAGCTGCGAATCGACGA 60.277 61.111 6.91 0.00 44.57 4.20
944 1020 0.256177 GGAGGGGAGCTAGGGTTTTG 59.744 60.000 0.00 0.00 0.00 2.44
948 1024 3.780275 GGGGAGGGGAGCTAGGGT 61.780 72.222 0.00 0.00 0.00 4.34
1107 1618 2.433868 TGTTGTTGTACTCGAGGAGC 57.566 50.000 18.41 6.79 32.04 4.70
1428 1939 0.107993 CGATGAGCTTGAAGGCCTCA 60.108 55.000 5.23 2.73 0.00 3.86
1463 1974 3.371063 TGAGGACGTCGAGCACCC 61.371 66.667 9.92 0.00 0.00 4.61
1464 1975 2.126424 GTGAGGACGTCGAGCACC 60.126 66.667 17.87 2.21 0.00 5.01
1503 2014 4.779733 ACCTCCTCGCCATCGGGT 62.780 66.667 0.00 0.00 33.43 5.28
1542 2067 2.099098 TCGAGCAATTACGAGCAGATGA 59.901 45.455 0.00 0.00 34.49 2.92
1552 2077 7.072030 CAGTTAATTAGCCATCGAGCAATTAC 58.928 38.462 0.00 4.13 31.54 1.89
1566 2091 6.318900 ACCCAATACTTGAGCAGTTAATTAGC 59.681 38.462 0.00 0.00 36.88 3.09
1567 2092 7.336931 ACACCCAATACTTGAGCAGTTAATTAG 59.663 37.037 0.00 0.00 36.88 1.73
1578 2103 4.713824 TCGAGTACACCCAATACTTGAG 57.286 45.455 0.00 0.00 37.89 3.02
1598 2123 6.456988 CCGAAGTAAATTGATGGTACTGCTTC 60.457 42.308 0.00 0.00 0.00 3.86
1604 2129 3.942748 TGCCCGAAGTAAATTGATGGTAC 59.057 43.478 0.00 0.00 0.00 3.34
1654 2179 8.253867 TGTAAAGGTCTAATCGGTTGGTATAT 57.746 34.615 0.00 0.00 0.00 0.86
1655 2180 7.658525 TGTAAAGGTCTAATCGGTTGGTATA 57.341 36.000 0.00 0.00 0.00 1.47
1659 2184 5.064707 CACATGTAAAGGTCTAATCGGTTGG 59.935 44.000 0.00 0.00 0.00 3.77
1702 2227 7.380431 ACAGACTGCAGTACTACTAACTAAG 57.620 40.000 21.73 2.16 0.00 2.18
1705 2230 6.651975 AAACAGACTGCAGTACTACTAACT 57.348 37.500 21.73 7.00 0.00 2.24
1745 2270 8.374180 ACATTAACTGTTCGTGAGGCAACTTG 62.374 42.308 10.77 0.00 41.60 3.16
1841 2396 4.213564 ACCAACCAATTTGAAGCAACAA 57.786 36.364 0.00 0.00 37.39 2.83
1906 2462 3.075641 GGAGGGGGTCAGGACGAC 61.076 72.222 0.00 0.00 44.57 4.34
1944 2500 8.810427 CAAACATTAGCAGTTAATTAGCCATTG 58.190 33.333 0.00 0.00 29.37 2.82
1963 2519 4.980573 TGCTTCTAGTACACCCAAACATT 58.019 39.130 0.00 0.00 0.00 2.71
2052 2998 2.061773 CTGAGAAACACACGTAGGCAG 58.938 52.381 0.00 0.00 0.00 4.85
2056 3002 2.440539 AGCCTGAGAAACACACGTAG 57.559 50.000 0.00 0.00 0.00 3.51
2071 3017 4.770795 CACTAGCAACAAATACCTAGCCT 58.229 43.478 0.00 0.00 32.49 4.58
2072 3018 3.312697 GCACTAGCAACAAATACCTAGCC 59.687 47.826 0.00 0.00 41.58 3.93
2073 3019 4.537936 GCACTAGCAACAAATACCTAGC 57.462 45.455 0.00 0.00 41.58 3.42
2145 3091 3.270027 CAAGTATCAATCAACTGGCCGA 58.730 45.455 0.00 0.00 0.00 5.54
2163 3109 2.213499 GCTATTCGATGACCCACCAAG 58.787 52.381 0.00 0.00 0.00 3.61
2166 3112 0.600255 CGGCTATTCGATGACCCACC 60.600 60.000 0.00 0.00 0.00 4.61
2167 3113 0.387929 TCGGCTATTCGATGACCCAC 59.612 55.000 0.00 0.00 33.92 4.61
2168 3114 1.338107 ATCGGCTATTCGATGACCCA 58.662 50.000 0.00 0.00 46.52 4.51
2175 3121 8.085909 TGATAAATCAGTTAATCGGCTATTCGA 58.914 33.333 0.00 0.00 36.63 3.71
2224 3170 1.206132 TGGCGATGCGGGGTAATATAG 59.794 52.381 0.00 0.00 0.00 1.31
2236 3182 2.363711 TATCGGTCAGGTGGCGATGC 62.364 60.000 0.00 0.00 0.00 3.91
2237 3183 0.318441 ATATCGGTCAGGTGGCGATG 59.682 55.000 0.00 0.00 0.00 3.84
2238 3184 0.318441 CATATCGGTCAGGTGGCGAT 59.682 55.000 0.00 0.00 0.00 4.58
2258 3204 3.638860 TCAGGATATCGGTAACTGGTGT 58.361 45.455 9.93 0.00 0.00 4.16
2264 3210 7.730364 ATTCATTGTTCAGGATATCGGTAAC 57.270 36.000 0.00 1.75 0.00 2.50
2271 3217 6.384886 AGGGCAAAATTCATTGTTCAGGATAT 59.615 34.615 0.00 0.00 32.80 1.63
2277 3223 3.401182 GCAGGGCAAAATTCATTGTTCA 58.599 40.909 0.00 0.00 32.80 3.18
2299 3245 2.005451 GTTCATGGCTGCAGTACTGAG 58.995 52.381 27.08 19.58 0.00 3.35
2311 3257 7.499232 ACCTACTATGAATAAACTGTTCATGGC 59.501 37.037 10.65 0.00 43.93 4.40
2438 3392 8.946085 CACCAAGCTTAAGTACATAAAGAATGA 58.054 33.333 0.00 0.00 39.07 2.57
2439 3393 8.184192 CCACCAAGCTTAAGTACATAAAGAATG 58.816 37.037 0.00 0.00 41.74 2.67
2447 3401 2.041081 TGGCCACCAAGCTTAAGTACAT 59.959 45.455 0.00 0.00 0.00 2.29
2462 3416 1.671379 GAACGAACCTCCTGGCCAC 60.671 63.158 0.00 0.00 36.63 5.01
2477 3431 0.836400 TGTGGGGAGGAGTCAGGAAC 60.836 60.000 0.00 0.00 0.00 3.62
2486 3440 2.770130 GGGCAATTGTGGGGAGGA 59.230 61.111 7.40 0.00 0.00 3.71
2584 3538 4.952460 ACACATGTAAACGTCCTAACACT 58.048 39.130 0.00 0.00 0.00 3.55
2611 3595 7.817962 ACTGTACTAGCAACAAATACCTACTTG 59.182 37.037 0.00 0.00 0.00 3.16
2612 3596 7.904205 ACTGTACTAGCAACAAATACCTACTT 58.096 34.615 0.00 0.00 0.00 2.24
2648 3632 0.961019 GGCAACTTTGATGCTGGACA 59.039 50.000 0.00 0.00 43.34 4.02
2659 3643 3.525800 AACTGTCTATGGGGCAACTTT 57.474 42.857 0.00 0.00 0.00 2.66
2665 3649 6.592870 ACTAAGAATTAACTGTCTATGGGGC 58.407 40.000 0.00 0.00 0.00 5.80
2795 3779 3.066203 GGTTTACATAGGCCCAATCAACG 59.934 47.826 0.00 0.00 0.00 4.10
2797 3781 4.601406 AGGTTTACATAGGCCCAATCAA 57.399 40.909 0.00 0.00 0.00 2.57
2805 3789 7.287512 ACTAAGCTACTAGGTTTACATAGGC 57.712 40.000 5.85 1.71 37.16 3.93
2823 3807 5.918426 AGTTTACAGAGGGAGTACTAAGC 57.082 43.478 0.00 0.00 0.00 3.09
2845 3829 7.455058 TGCTCCAAAACAGGTACTAAGAATTA 58.545 34.615 0.00 0.00 36.02 1.40
2846 3830 6.303839 TGCTCCAAAACAGGTACTAAGAATT 58.696 36.000 0.00 0.00 36.02 2.17
2847 3831 5.876357 TGCTCCAAAACAGGTACTAAGAAT 58.124 37.500 0.00 0.00 36.02 2.40
2848 3832 5.298989 TGCTCCAAAACAGGTACTAAGAA 57.701 39.130 0.00 0.00 36.02 2.52
2849 3833 4.967084 TGCTCCAAAACAGGTACTAAGA 57.033 40.909 0.00 0.00 36.02 2.10
2850 3834 5.003804 ACATGCTCCAAAACAGGTACTAAG 58.996 41.667 0.00 0.00 36.02 2.18
2851 3835 4.980573 ACATGCTCCAAAACAGGTACTAA 58.019 39.130 0.00 0.00 36.02 2.24
2852 3836 4.634012 ACATGCTCCAAAACAGGTACTA 57.366 40.909 0.00 0.00 36.02 1.82
2853 3837 3.508845 ACATGCTCCAAAACAGGTACT 57.491 42.857 0.00 0.00 43.88 2.73
2854 3838 4.680171 GTACATGCTCCAAAACAGGTAC 57.320 45.455 2.73 2.73 43.88 3.34
2855 3839 4.634012 AGTACATGCTCCAAAACAGGTA 57.366 40.909 0.00 0.00 32.36 3.08
2856 3840 3.508845 AGTACATGCTCCAAAACAGGT 57.491 42.857 0.00 0.00 34.75 4.00
2857 3841 5.957842 TTAAGTACATGCTCCAAAACAGG 57.042 39.130 0.00 0.00 0.00 4.00
2858 3842 7.542130 GGAAATTAAGTACATGCTCCAAAACAG 59.458 37.037 0.00 0.00 0.00 3.16
2859 3843 7.232534 AGGAAATTAAGTACATGCTCCAAAACA 59.767 33.333 0.00 0.00 0.00 2.83
2860 3844 7.602753 AGGAAATTAAGTACATGCTCCAAAAC 58.397 34.615 0.00 0.00 0.00 2.43
2861 3845 7.775053 AGGAAATTAAGTACATGCTCCAAAA 57.225 32.000 0.00 0.00 0.00 2.44
2862 3846 8.871629 TTAGGAAATTAAGTACATGCTCCAAA 57.128 30.769 0.00 0.00 0.00 3.28
2863 3847 8.902806 CATTAGGAAATTAAGTACATGCTCCAA 58.097 33.333 0.00 0.00 0.00 3.53
2864 3848 8.052748 ACATTAGGAAATTAAGTACATGCTCCA 58.947 33.333 0.00 0.00 0.00 3.86
2865 3849 8.345565 CACATTAGGAAATTAAGTACATGCTCC 58.654 37.037 0.00 0.00 0.00 4.70
2866 3850 8.893727 ACACATTAGGAAATTAAGTACATGCTC 58.106 33.333 0.00 0.00 0.00 4.26
2867 3851 8.807948 ACACATTAGGAAATTAAGTACATGCT 57.192 30.769 0.00 0.00 0.00 3.79
2898 3882 9.167311 GCAATGGATATCCTTAAATCGACTTAT 57.833 33.333 22.35 0.15 36.82 1.73
2899 3883 8.375506 AGCAATGGATATCCTTAAATCGACTTA 58.624 33.333 22.35 0.00 36.82 2.24
2900 3884 7.227156 AGCAATGGATATCCTTAAATCGACTT 58.773 34.615 22.35 0.00 36.82 3.01
2901 3885 6.773638 AGCAATGGATATCCTTAAATCGACT 58.226 36.000 22.35 5.26 36.82 4.18
2902 3886 7.173218 TGAAGCAATGGATATCCTTAAATCGAC 59.827 37.037 22.35 7.42 36.82 4.20
2903 3887 7.223584 TGAAGCAATGGATATCCTTAAATCGA 58.776 34.615 22.35 0.00 36.82 3.59
2904 3888 7.439157 TGAAGCAATGGATATCCTTAAATCG 57.561 36.000 22.35 5.60 36.82 3.34
2908 3892 8.796475 GCTATTTGAAGCAATGGATATCCTTAA 58.204 33.333 22.35 2.86 42.30 1.85
2909 3893 8.166061 AGCTATTTGAAGCAATGGATATCCTTA 58.834 33.333 22.35 3.65 45.30 2.69
2910 3894 7.008941 AGCTATTTGAAGCAATGGATATCCTT 58.991 34.615 22.35 13.64 45.30 3.36
2911 3895 6.550163 AGCTATTTGAAGCAATGGATATCCT 58.450 36.000 22.35 5.66 45.30 3.24
2912 3896 6.830873 AGCTATTTGAAGCAATGGATATCC 57.169 37.500 15.39 15.39 45.30 2.59
2918 3902 8.758715 GCTAAATTAAGCTATTTGAAGCAATGG 58.241 33.333 10.09 0.00 45.30 3.16
2936 3920 9.256477 CGGTACACTGATAATCAAGCTAAATTA 57.744 33.333 0.00 0.00 0.00 1.40
2937 3921 7.769044 ACGGTACACTGATAATCAAGCTAAATT 59.231 33.333 0.00 0.00 0.00 1.82
2938 3922 7.272978 ACGGTACACTGATAATCAAGCTAAAT 58.727 34.615 0.00 0.00 0.00 1.40
2939 3923 6.636705 ACGGTACACTGATAATCAAGCTAAA 58.363 36.000 0.00 0.00 0.00 1.85
2940 3924 6.216801 ACGGTACACTGATAATCAAGCTAA 57.783 37.500 0.00 0.00 0.00 3.09
2941 3925 5.847111 ACGGTACACTGATAATCAAGCTA 57.153 39.130 0.00 0.00 0.00 3.32
2942 3926 4.737855 ACGGTACACTGATAATCAAGCT 57.262 40.909 0.00 0.00 0.00 3.74
2943 3927 4.868171 TCAACGGTACACTGATAATCAAGC 59.132 41.667 0.00 0.00 0.00 4.01
2944 3928 7.401860 CAATCAACGGTACACTGATAATCAAG 58.598 38.462 0.00 0.00 30.42 3.02
2945 3929 6.315144 CCAATCAACGGTACACTGATAATCAA 59.685 38.462 0.00 0.00 30.42 2.57
2946 3930 5.815222 CCAATCAACGGTACACTGATAATCA 59.185 40.000 0.00 0.00 30.42 2.57
2947 3931 5.236478 CCCAATCAACGGTACACTGATAATC 59.764 44.000 0.00 0.00 30.42 1.75
2948 3932 5.123227 CCCAATCAACGGTACACTGATAAT 58.877 41.667 0.00 0.00 30.42 1.28
2949 3933 4.509616 CCCAATCAACGGTACACTGATAA 58.490 43.478 0.00 0.00 30.42 1.75
2950 3934 3.680475 GCCCAATCAACGGTACACTGATA 60.680 47.826 0.00 0.00 30.42 2.15
2951 3935 2.939640 GCCCAATCAACGGTACACTGAT 60.940 50.000 0.00 0.00 31.66 2.90
2952 3936 1.609580 GCCCAATCAACGGTACACTGA 60.610 52.381 0.00 0.00 0.00 3.41
2953 3937 0.802494 GCCCAATCAACGGTACACTG 59.198 55.000 0.00 0.00 0.00 3.66
2954 3938 0.322187 GGCCCAATCAACGGTACACT 60.322 55.000 0.00 0.00 0.00 3.55
2955 3939 0.322187 AGGCCCAATCAACGGTACAC 60.322 55.000 0.00 0.00 0.00 2.90
2956 3940 1.277579 TAGGCCCAATCAACGGTACA 58.722 50.000 0.00 0.00 0.00 2.90
2957 3941 2.218603 CATAGGCCCAATCAACGGTAC 58.781 52.381 0.00 0.00 0.00 3.34
2958 3942 1.841277 ACATAGGCCCAATCAACGGTA 59.159 47.619 0.00 0.00 0.00 4.02
2959 3943 0.623723 ACATAGGCCCAATCAACGGT 59.376 50.000 0.00 0.00 0.00 4.83
2960 3944 2.631160 TACATAGGCCCAATCAACGG 57.369 50.000 0.00 0.00 0.00 4.44
2961 3945 3.066203 GGTTTACATAGGCCCAATCAACG 59.934 47.826 0.00 0.00 0.00 4.10
2962 3946 4.278310 AGGTTTACATAGGCCCAATCAAC 58.722 43.478 0.00 0.00 0.00 3.18
2963 3947 4.601406 AGGTTTACATAGGCCCAATCAA 57.399 40.909 0.00 0.00 0.00 2.57
2964 3948 4.724798 ACTAGGTTTACATAGGCCCAATCA 59.275 41.667 0.00 0.00 34.80 2.57
2965 3949 5.306114 ACTAGGTTTACATAGGCCCAATC 57.694 43.478 0.00 0.00 34.80 2.67
2966 3950 5.221864 GCTACTAGGTTTACATAGGCCCAAT 60.222 44.000 0.00 0.00 34.80 3.16
2967 3951 4.102054 GCTACTAGGTTTACATAGGCCCAA 59.898 45.833 0.00 0.00 34.80 4.12
2968 3952 3.644738 GCTACTAGGTTTACATAGGCCCA 59.355 47.826 0.00 0.00 34.80 5.36
2969 3953 3.902467 AGCTACTAGGTTTACATAGGCCC 59.098 47.826 0.00 0.00 34.80 5.80
2970 3954 5.548181 AAGCTACTAGGTTTACATAGGCC 57.452 43.478 0.00 0.00 34.80 5.19
2971 3955 7.287512 ACTAAGCTACTAGGTTTACATAGGC 57.712 40.000 5.85 1.71 37.16 3.93
2972 3956 9.571816 AGTACTAAGCTACTAGGTTTACATAGG 57.428 37.037 5.85 0.00 37.16 2.57
2974 3958 9.566432 GGAGTACTAAGCTACTAGGTTTACATA 57.434 37.037 5.85 0.00 37.16 2.29
2975 3959 7.505248 GGGAGTACTAAGCTACTAGGTTTACAT 59.495 40.741 5.85 0.00 37.16 2.29
2976 3960 6.830838 GGGAGTACTAAGCTACTAGGTTTACA 59.169 42.308 5.85 0.00 37.16 2.41
2977 3961 7.059788 AGGGAGTACTAAGCTACTAGGTTTAC 58.940 42.308 5.85 4.31 37.16 2.01
2978 3962 7.128573 AGAGGGAGTACTAAGCTACTAGGTTTA 59.871 40.741 5.85 0.00 37.16 2.01
2979 3963 6.068912 AGAGGGAGTACTAAGCTACTAGGTTT 60.069 42.308 5.85 0.00 37.16 3.27
2980 3964 5.432720 AGAGGGAGTACTAAGCTACTAGGTT 59.567 44.000 0.00 5.83 39.52 3.50
2981 3965 4.977090 AGAGGGAGTACTAAGCTACTAGGT 59.023 45.833 0.00 0.00 0.00 3.08
2982 3966 5.163174 ACAGAGGGAGTACTAAGCTACTAGG 60.163 48.000 0.00 0.00 0.00 3.02
2983 3967 5.932455 ACAGAGGGAGTACTAAGCTACTAG 58.068 45.833 0.00 0.00 0.00 2.57
2984 3968 5.972327 ACAGAGGGAGTACTAAGCTACTA 57.028 43.478 0.00 0.00 0.00 1.82
2985 3969 4.866327 ACAGAGGGAGTACTAAGCTACT 57.134 45.455 0.00 0.00 0.00 2.57
2986 3970 6.602803 AGTTTACAGAGGGAGTACTAAGCTAC 59.397 42.308 0.00 0.00 0.00 3.58
2987 3971 6.729428 AGTTTACAGAGGGAGTACTAAGCTA 58.271 40.000 0.00 0.00 0.00 3.32
2988 3972 5.581975 AGTTTACAGAGGGAGTACTAAGCT 58.418 41.667 0.00 0.00 0.00 3.74
2989 3973 5.918426 AGTTTACAGAGGGAGTACTAAGC 57.082 43.478 0.00 0.00 0.00 3.09
2996 3980 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2997 3981 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2998 3982 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2999 3983 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3000 3984 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3015 3999 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3016 4000 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3017 4001 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3018 4002 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3019 4003 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
3020 4004 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
3021 4005 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
3048 4032 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
3049 4033 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
3050 4034 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
3051 4035 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
3052 4036 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
3053 4037 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3058 4042 8.931568 ACAAATACTCCCTCCGTAAACTAATAT 58.068 33.333 0.00 0.00 0.00 1.28
3059 4043 8.310122 ACAAATACTCCCTCCGTAAACTAATA 57.690 34.615 0.00 0.00 0.00 0.98
3060 4044 7.191593 ACAAATACTCCCTCCGTAAACTAAT 57.808 36.000 0.00 0.00 0.00 1.73
3061 4045 6.610075 ACAAATACTCCCTCCGTAAACTAA 57.390 37.500 0.00 0.00 0.00 2.24
3062 4046 7.631377 GCTTACAAATACTCCCTCCGTAAACTA 60.631 40.741 0.00 0.00 0.00 2.24
3063 4047 6.610075 TTACAAATACTCCCTCCGTAAACT 57.390 37.500 0.00 0.00 0.00 2.66
3064 4048 5.292834 GCTTACAAATACTCCCTCCGTAAAC 59.707 44.000 0.00 0.00 0.00 2.01
3065 4049 5.422145 GCTTACAAATACTCCCTCCGTAAA 58.578 41.667 0.00 0.00 0.00 2.01
3066 4050 4.141869 GGCTTACAAATACTCCCTCCGTAA 60.142 45.833 0.00 0.00 0.00 3.18
3067 4051 3.385755 GGCTTACAAATACTCCCTCCGTA 59.614 47.826 0.00 0.00 0.00 4.02
3068 4052 2.169978 GGCTTACAAATACTCCCTCCGT 59.830 50.000 0.00 0.00 0.00 4.69
3069 4053 2.169769 TGGCTTACAAATACTCCCTCCG 59.830 50.000 0.00 0.00 0.00 4.63
3070 4054 3.054655 TGTGGCTTACAAATACTCCCTCC 60.055 47.826 0.00 0.00 36.06 4.30
3071 4055 4.081087 TCTGTGGCTTACAAATACTCCCTC 60.081 45.833 0.00 0.00 39.20 4.30
3072 4056 3.844211 TCTGTGGCTTACAAATACTCCCT 59.156 43.478 0.00 0.00 39.20 4.20
3073 4057 3.939592 GTCTGTGGCTTACAAATACTCCC 59.060 47.826 0.00 0.00 39.20 4.30
3074 4058 4.575885 TGTCTGTGGCTTACAAATACTCC 58.424 43.478 0.00 0.00 39.20 3.85
3075 4059 5.238583 ACTGTCTGTGGCTTACAAATACTC 58.761 41.667 0.00 0.00 39.20 2.59
3076 4060 5.228945 ACTGTCTGTGGCTTACAAATACT 57.771 39.130 0.00 0.00 39.20 2.12
3077 4061 5.581085 CCTACTGTCTGTGGCTTACAAATAC 59.419 44.000 0.00 0.00 39.20 1.89
3078 4062 5.247564 ACCTACTGTCTGTGGCTTACAAATA 59.752 40.000 0.00 0.00 39.20 1.40
3079 4063 4.041691 ACCTACTGTCTGTGGCTTACAAAT 59.958 41.667 0.00 0.00 39.20 2.32
3080 4064 3.389983 ACCTACTGTCTGTGGCTTACAAA 59.610 43.478 0.00 0.00 39.20 2.83
3081 4065 2.969950 ACCTACTGTCTGTGGCTTACAA 59.030 45.455 0.00 0.00 39.20 2.41
3082 4066 2.605257 ACCTACTGTCTGTGGCTTACA 58.395 47.619 0.00 0.00 37.78 2.41
3083 4067 3.244112 ACAACCTACTGTCTGTGGCTTAC 60.244 47.826 0.00 0.00 0.00 2.34
3084 4068 2.969950 ACAACCTACTGTCTGTGGCTTA 59.030 45.455 0.00 0.00 0.00 3.09
3085 4069 1.768870 ACAACCTACTGTCTGTGGCTT 59.231 47.619 0.00 0.00 0.00 4.35
3086 4070 1.424638 ACAACCTACTGTCTGTGGCT 58.575 50.000 0.00 0.00 0.00 4.75
3087 4071 3.611766 ATACAACCTACTGTCTGTGGC 57.388 47.619 0.00 0.00 0.00 5.01
3088 4072 6.460781 TGTTTATACAACCTACTGTCTGTGG 58.539 40.000 0.00 0.00 0.00 4.17
3089 4073 7.152645 ACTGTTTATACAACCTACTGTCTGTG 58.847 38.462 0.00 0.00 32.92 3.66
3230 4215 1.692411 ACTGTTCTTGGGGCAACTTC 58.308 50.000 0.00 0.00 0.00 3.01
3343 4329 4.715713 GGAGGGAGTACCATATTTGAACC 58.284 47.826 0.00 0.00 43.89 3.62
3382 4368 3.222603 TCTAGATACATCCGCTTGAGCA 58.777 45.455 3.65 0.00 42.21 4.26
3409 4395 5.752472 CCAAACAGATGTATCTAGCACTGAG 59.248 44.000 0.00 0.00 34.85 3.35
3589 4932 1.396653 ACTGCCAATCTGCCATAAGC 58.603 50.000 0.00 0.00 44.14 3.09
3593 4936 1.216175 ACCATACTGCCAATCTGCCAT 59.784 47.619 0.00 0.00 0.00 4.40
3662 5181 3.123621 GTCACCTGTAGAAAATGTCAGCG 59.876 47.826 0.00 0.00 0.00 5.18
3766 5285 5.072040 TCTCAACATCAGCACGAATCTTA 57.928 39.130 0.00 0.00 0.00 2.10
3899 5433 1.615384 GCTTTCCTCATGGCTTCCTGT 60.615 52.381 0.00 0.00 0.00 4.00
4100 5634 3.312421 TGCAAAGACTAACAGTTCTGTGC 59.688 43.478 8.48 8.48 37.24 4.57
4151 5687 6.535508 CCCTGATTACTTAGTTACAAGACAGC 59.464 42.308 0.00 0.00 0.00 4.40
4284 5821 1.949525 CTCAACAGTCAACACAAGGGG 59.050 52.381 0.00 0.00 0.00 4.79
4369 5906 4.920640 ATACTCGACACAAGGGTATCTG 57.079 45.455 0.00 0.00 0.00 2.90
4370 5907 5.657302 AGAAATACTCGACACAAGGGTATCT 59.343 40.000 0.00 0.00 0.00 1.98
4371 5908 5.903810 AGAAATACTCGACACAAGGGTATC 58.096 41.667 0.00 0.00 0.00 2.24
4372 5909 5.934402 AGAAATACTCGACACAAGGGTAT 57.066 39.130 0.00 0.00 0.00 2.73
4373 5910 6.604396 TCATAGAAATACTCGACACAAGGGTA 59.396 38.462 0.00 0.00 0.00 3.69
4374 5911 5.421056 TCATAGAAATACTCGACACAAGGGT 59.579 40.000 0.00 0.00 0.00 4.34
4384 5921 4.751600 TGCCTTGCATCATAGAAATACTCG 59.248 41.667 0.00 0.00 31.71 4.18
4410 5947 5.013079 TGAGATGTGTGAATCCAAAGTACCT 59.987 40.000 0.00 0.00 0.00 3.08
4550 6090 0.935366 GGCTAGAGTGACGCGTATGC 60.935 60.000 13.97 8.78 37.91 3.14
4604 6144 8.391106 GTCACTGGATCACATACTAAAATTCAC 58.609 37.037 0.00 0.00 0.00 3.18
4664 6204 1.009060 TGCTATCCCCTGGTCCTGTTA 59.991 52.381 0.00 0.00 0.00 2.41
4807 6349 3.383185 TGAATCGGCAGTGGTTTCTTTTT 59.617 39.130 0.00 0.00 0.00 1.94
4845 6387 0.325296 ATGGGCGGGACTGAGTAGAA 60.325 55.000 0.00 0.00 0.00 2.10
4846 6388 1.043116 CATGGGCGGGACTGAGTAGA 61.043 60.000 0.00 0.00 0.00 2.59
4850 6392 0.533755 GAATCATGGGCGGGACTGAG 60.534 60.000 0.00 0.00 0.00 3.35
4887 6435 1.871126 CTCTCTCGCTCACCTGCACA 61.871 60.000 0.00 0.00 0.00 4.57
4941 6489 0.177604 CCTCCTCACCTGCTAGCTTG 59.822 60.000 17.23 10.47 0.00 4.01
4953 6501 4.710167 TCGCCGTCGACCTCCTCA 62.710 66.667 10.58 0.00 40.21 3.86
4977 6525 0.181587 CAGAGTCCTCCTCCTCGCTA 59.818 60.000 0.00 0.00 41.47 4.26
5241 6794 6.494893 AAAGCGCAATTAACAGTATTCAGA 57.505 33.333 11.47 0.00 0.00 3.27
5283 6837 8.853345 CGATAAGCAAAATCCATGTATAAATGC 58.147 33.333 0.00 0.00 0.00 3.56
5320 6874 2.297033 GTGTCATGCACCAAATTCCACT 59.703 45.455 8.54 0.00 42.10 4.00
5448 7004 2.553172 GCACATAGTACTCCCTCCGTAG 59.447 54.545 0.00 0.00 0.00 3.51
5489 7054 6.756299 TCAAGCACATGCAAAGTTATCATA 57.244 33.333 6.64 0.00 45.16 2.15
5501 7075 3.857665 CAGACATCATTTCAAGCACATGC 59.142 43.478 0.00 0.00 42.49 4.06
5534 7108 8.970691 ACAGTCATCAAAACACAAAATATAGC 57.029 30.769 0.00 0.00 0.00 2.97
5543 7117 4.269183 ACTCCAACAGTCATCAAAACACA 58.731 39.130 0.00 0.00 0.00 3.72
5551 7125 4.883083 TCAGTACAACTCCAACAGTCATC 58.117 43.478 0.00 0.00 32.30 2.92
5553 7127 4.746535 TTCAGTACAACTCCAACAGTCA 57.253 40.909 0.00 0.00 32.30 3.41
5557 7131 5.049954 GCGTAATTTCAGTACAACTCCAACA 60.050 40.000 0.00 0.00 0.00 3.33
5561 7135 5.049954 TGTTGCGTAATTTCAGTACAACTCC 60.050 40.000 0.00 0.00 37.42 3.85
5591 7165 3.727723 ACGTAGAAAGTGTCGAAAACGAG 59.272 43.478 2.44 0.00 0.00 4.18
5594 7168 4.085210 CCTCACGTAGAAAGTGTCGAAAAC 60.085 45.833 0.00 0.00 40.28 2.43
5615 7189 1.139058 ACGAAGCAGAAGACAACACCT 59.861 47.619 0.00 0.00 0.00 4.00
5634 7369 5.809562 AGCTGCTATATCATCAATTCGCTAC 59.190 40.000 0.00 0.00 0.00 3.58
5636 7371 4.829968 AGCTGCTATATCATCAATTCGCT 58.170 39.130 0.00 0.00 0.00 4.93
5655 7390 7.334090 TCTTGCTGAATGAGACTTATTTAGCT 58.666 34.615 26.55 0.00 43.50 3.32
5666 7401 2.224597 TGGTGCTTCTTGCTGAATGAGA 60.225 45.455 0.00 0.00 43.37 3.27
5679 7414 2.086054 CACTAGACCACTGGTGCTTC 57.914 55.000 5.10 0.00 45.52 3.86
5822 9998 4.578516 TCTTTCTTCTCGTGGCATTCAAAA 59.421 37.500 0.00 0.00 0.00 2.44
5850 10026 3.338110 TTTTTGTCTTTAGGCCCCCTT 57.662 42.857 0.00 0.00 34.61 3.95
5871 10048 3.642141 TGAGCAGAGGAAAAGGGTTTTT 58.358 40.909 0.00 0.00 39.16 1.94
5872 10049 3.312736 TGAGCAGAGGAAAAGGGTTTT 57.687 42.857 0.00 0.00 35.12 2.43
5874 10051 2.175715 ACTTGAGCAGAGGAAAAGGGTT 59.824 45.455 0.00 0.00 0.00 4.11
5875 10052 1.777272 ACTTGAGCAGAGGAAAAGGGT 59.223 47.619 0.00 0.00 0.00 4.34
5876 10053 2.575805 ACTTGAGCAGAGGAAAAGGG 57.424 50.000 0.00 0.00 0.00 3.95
5927 10357 1.002792 GTTGGACAGAAAGCGAACACC 60.003 52.381 0.00 0.00 0.00 4.16
5933 10363 1.333791 GGTTTCGTTGGACAGAAAGCG 60.334 52.381 4.72 0.00 42.37 4.68
5943 10373 1.588674 TGTGTGCTAGGTTTCGTTGG 58.411 50.000 0.00 0.00 0.00 3.77
5944 10374 2.353269 TGTTGTGTGCTAGGTTTCGTTG 59.647 45.455 0.00 0.00 0.00 4.10
5945 10375 2.634600 TGTTGTGTGCTAGGTTTCGTT 58.365 42.857 0.00 0.00 0.00 3.85
5946 10376 2.319136 TGTTGTGTGCTAGGTTTCGT 57.681 45.000 0.00 0.00 0.00 3.85
5947 10377 3.664276 CGATTGTTGTGTGCTAGGTTTCG 60.664 47.826 0.00 0.00 0.00 3.46
5948 10378 3.496884 TCGATTGTTGTGTGCTAGGTTTC 59.503 43.478 0.00 0.00 0.00 2.78
5949 10379 3.250040 GTCGATTGTTGTGTGCTAGGTTT 59.750 43.478 0.00 0.00 0.00 3.27
5950 10380 2.806244 GTCGATTGTTGTGTGCTAGGTT 59.194 45.455 0.00 0.00 0.00 3.50
5951 10381 2.413837 GTCGATTGTTGTGTGCTAGGT 58.586 47.619 0.00 0.00 0.00 3.08
5952 10382 1.390123 CGTCGATTGTTGTGTGCTAGG 59.610 52.381 0.00 0.00 0.00 3.02
5953 10383 1.201812 GCGTCGATTGTTGTGTGCTAG 60.202 52.381 0.00 0.00 0.00 3.42
5954 10384 0.787787 GCGTCGATTGTTGTGTGCTA 59.212 50.000 0.00 0.00 0.00 3.49
5955 10385 1.157257 TGCGTCGATTGTTGTGTGCT 61.157 50.000 0.00 0.00 0.00 4.40
5956 10386 0.316607 TTGCGTCGATTGTTGTGTGC 60.317 50.000 0.00 0.00 0.00 4.57
5957 10387 1.267782 TGTTGCGTCGATTGTTGTGTG 60.268 47.619 0.00 0.00 0.00 3.82
5958 10388 1.003972 CTGTTGCGTCGATTGTTGTGT 60.004 47.619 0.00 0.00 0.00 3.72
5959 10389 1.003972 ACTGTTGCGTCGATTGTTGTG 60.004 47.619 0.00 0.00 0.00 3.33
5960 10390 1.260561 GACTGTTGCGTCGATTGTTGT 59.739 47.619 0.00 0.00 0.00 3.32
5961 10391 1.526887 AGACTGTTGCGTCGATTGTTG 59.473 47.619 0.00 0.00 38.90 3.33
5962 10392 1.526887 CAGACTGTTGCGTCGATTGTT 59.473 47.619 0.00 0.00 38.90 2.83
5963 10393 1.139989 CAGACTGTTGCGTCGATTGT 58.860 50.000 0.00 0.00 38.90 2.71
5964 10394 0.179240 GCAGACTGTTGCGTCGATTG 60.179 55.000 3.99 0.00 38.90 2.67
5965 10395 1.291877 GGCAGACTGTTGCGTCGATT 61.292 55.000 3.99 0.00 45.00 3.34
5966 10396 1.738099 GGCAGACTGTTGCGTCGAT 60.738 57.895 3.99 0.00 45.00 3.59
5967 10397 2.355837 GGCAGACTGTTGCGTCGA 60.356 61.111 3.99 0.00 45.00 4.20
5968 10398 2.356313 AGGCAGACTGTTGCGTCG 60.356 61.111 3.99 0.00 45.00 5.12
5969 10399 3.248029 CAGGCAGACTGTTGCGTC 58.752 61.111 3.99 0.00 45.00 5.19
5977 10407 2.330216 AGTAAAGGACACAGGCAGACT 58.670 47.619 0.00 0.00 0.00 3.24
5978 10408 2.841442 AGTAAAGGACACAGGCAGAC 57.159 50.000 0.00 0.00 0.00 3.51
5979 10409 3.740115 GAAAGTAAAGGACACAGGCAGA 58.260 45.455 0.00 0.00 0.00 4.26
5980 10410 2.480419 CGAAAGTAAAGGACACAGGCAG 59.520 50.000 0.00 0.00 0.00 4.85
5981 10411 2.489971 CGAAAGTAAAGGACACAGGCA 58.510 47.619 0.00 0.00 0.00 4.75
5982 10412 1.804748 CCGAAAGTAAAGGACACAGGC 59.195 52.381 0.00 0.00 0.00 4.85
5983 10413 1.804748 GCCGAAAGTAAAGGACACAGG 59.195 52.381 0.00 0.00 0.00 4.00
5984 10414 1.804748 GGCCGAAAGTAAAGGACACAG 59.195 52.381 0.00 0.00 32.05 3.66
5985 10415 1.141254 TGGCCGAAAGTAAAGGACACA 59.859 47.619 0.00 0.00 38.31 3.72
5986 10416 1.886886 TGGCCGAAAGTAAAGGACAC 58.113 50.000 0.00 0.00 38.31 3.67
5988 10418 1.743394 CCATGGCCGAAAGTAAAGGAC 59.257 52.381 0.00 0.00 0.00 3.85
5989 10419 1.631388 TCCATGGCCGAAAGTAAAGGA 59.369 47.619 6.96 0.00 0.00 3.36
5990 10420 2.017049 CTCCATGGCCGAAAGTAAAGG 58.983 52.381 6.96 0.00 0.00 3.11
5991 10421 2.711542 ACTCCATGGCCGAAAGTAAAG 58.288 47.619 6.96 0.00 0.00 1.85
5992 10422 2.871096 ACTCCATGGCCGAAAGTAAA 57.129 45.000 6.96 0.00 0.00 2.01
5993 10423 2.871096 AACTCCATGGCCGAAAGTAA 57.129 45.000 6.96 0.00 0.00 2.24
5994 10424 2.706890 GAAACTCCATGGCCGAAAGTA 58.293 47.619 6.96 0.00 0.00 2.24
5995 10425 1.534729 GAAACTCCATGGCCGAAAGT 58.465 50.000 6.96 1.39 0.00 2.66
5996 10426 0.447801 CGAAACTCCATGGCCGAAAG 59.552 55.000 6.96 0.64 0.00 2.62
5997 10427 1.582610 GCGAAACTCCATGGCCGAAA 61.583 55.000 6.96 0.00 0.00 3.46
5998 10428 2.038269 GCGAAACTCCATGGCCGAA 61.038 57.895 6.96 0.00 0.00 4.30
5999 10429 2.435938 GCGAAACTCCATGGCCGA 60.436 61.111 6.96 0.00 0.00 5.54
6000 10430 2.436646 AGCGAAACTCCATGGCCG 60.437 61.111 6.96 2.80 0.00 6.13
6001 10431 0.960364 TTGAGCGAAACTCCATGGCC 60.960 55.000 6.96 0.00 45.61 5.36
6002 10432 0.449388 CTTGAGCGAAACTCCATGGC 59.551 55.000 6.96 0.00 45.61 4.40
6003 10433 1.734465 GACTTGAGCGAAACTCCATGG 59.266 52.381 4.97 4.97 45.61 3.66
6004 10434 2.416747 TGACTTGAGCGAAACTCCATG 58.583 47.619 0.00 0.00 45.61 3.66
6005 10435 2.839486 TGACTTGAGCGAAACTCCAT 57.161 45.000 0.00 0.00 45.61 3.41
6006 10436 2.613026 TTGACTTGAGCGAAACTCCA 57.387 45.000 0.00 0.00 45.61 3.86
6007 10437 2.808543 ACATTGACTTGAGCGAAACTCC 59.191 45.455 0.00 0.00 45.61 3.85
6008 10438 3.743396 AGACATTGACTTGAGCGAAACTC 59.257 43.478 0.00 0.00 46.45 3.01
6009 10439 3.733337 AGACATTGACTTGAGCGAAACT 58.267 40.909 0.00 0.00 0.00 2.66
6010 10440 3.494626 TGAGACATTGACTTGAGCGAAAC 59.505 43.478 0.00 0.00 0.00 2.78
6011 10441 3.727726 TGAGACATTGACTTGAGCGAAA 58.272 40.909 0.00 0.00 0.00 3.46
6012 10442 3.320626 CTGAGACATTGACTTGAGCGAA 58.679 45.455 0.00 0.00 0.00 4.70
6013 10443 2.928301 GCTGAGACATTGACTTGAGCGA 60.928 50.000 0.00 0.00 0.00 4.93
6014 10444 1.392853 GCTGAGACATTGACTTGAGCG 59.607 52.381 0.00 0.00 0.00 5.03
6015 10445 1.736681 GGCTGAGACATTGACTTGAGC 59.263 52.381 10.52 10.52 0.00 4.26
6016 10446 2.289882 TGGGCTGAGACATTGACTTGAG 60.290 50.000 0.00 0.00 0.00 3.02
6017 10447 1.699083 TGGGCTGAGACATTGACTTGA 59.301 47.619 0.00 0.00 0.00 3.02
6018 10448 2.189594 TGGGCTGAGACATTGACTTG 57.810 50.000 0.00 0.00 0.00 3.16
6019 10449 4.785346 ATATGGGCTGAGACATTGACTT 57.215 40.909 0.00 0.00 0.00 3.01
6020 10450 4.655649 TGTATATGGGCTGAGACATTGACT 59.344 41.667 0.00 0.00 0.00 3.41
6021 10451 4.960938 TGTATATGGGCTGAGACATTGAC 58.039 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.