Multiple sequence alignment - TraesCS2D01G087000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G087000 chr2D 100.000 5378 0 0 1 5378 37464580 37469957 0.000000e+00 9932.0
1 TraesCS2D01G087000 chr2D 85.973 221 20 8 4715 4927 1636252 1636469 5.420000e-55 226.0
2 TraesCS2D01G087000 chr2D 89.820 167 13 2 4929 5092 37468997 37469162 1.520000e-50 211.0
3 TraesCS2D01G087000 chr2D 89.820 167 13 2 4418 4583 37469508 37469671 1.520000e-50 211.0
4 TraesCS2D01G087000 chr2D 89.286 112 12 0 4608 4719 36768674 36768785 2.020000e-29 141.0
5 TraesCS2D01G087000 chr2D 92.553 94 5 1 4609 4702 480757053 480756962 3.380000e-27 134.0
6 TraesCS2D01G087000 chr2D 86.726 113 14 1 4608 4719 617509967 617510079 2.030000e-24 124.0
7 TraesCS2D01G087000 chr2A 88.798 3062 194 64 134 3107 42318204 42321204 0.000000e+00 3616.0
8 TraesCS2D01G087000 chr2A 91.962 1356 52 25 3621 4969 42321936 42323241 0.000000e+00 1847.0
9 TraesCS2D01G087000 chr2A 90.690 290 20 7 3105 3391 42321246 42321531 3.930000e-101 379.0
10 TraesCS2D01G087000 chr2A 98.204 167 3 0 4926 5092 42323241 42323407 5.270000e-75 292.0
11 TraesCS2D01G087000 chr2A 93.293 164 10 1 4929 5092 42322702 42322864 1.940000e-59 241.0
12 TraesCS2D01G087000 chr2A 89.286 196 13 4 4414 4604 42323239 42323431 6.960000e-59 239.0
13 TraesCS2D01G087000 chr2A 94.964 139 7 0 5185 5323 42323410 42323548 9.070000e-53 219.0
14 TraesCS2D01G087000 chr2A 87.113 194 10 9 3420 3611 42321686 42321866 7.060000e-49 206.0
15 TraesCS2D01G087000 chr2A 92.473 93 7 0 1 93 42318105 42318197 3.380000e-27 134.0
16 TraesCS2D01G087000 chr2A 85.981 107 11 3 5075 5180 762142419 762142522 1.580000e-20 111.0
17 TraesCS2D01G087000 chr2B 86.908 2704 191 66 151 2767 65226460 65229087 0.000000e+00 2881.0
18 TraesCS2D01G087000 chr2B 92.164 536 28 5 4187 4714 65230098 65230627 0.000000e+00 745.0
19 TraesCS2D01G087000 chr2B 86.306 555 59 12 2840 3388 65229105 65229648 6.000000e-164 588.0
20 TraesCS2D01G087000 chr2B 87.451 255 15 7 3562 3801 65229702 65229954 1.480000e-70 278.0
21 TraesCS2D01G087000 chr2B 87.970 133 10 3 3835 3967 65229954 65230080 9.330000e-33 152.0
22 TraesCS2D01G087000 chr2B 85.981 107 13 2 8 113 65226352 65226457 4.400000e-21 113.0
23 TraesCS2D01G087000 chr6D 86.222 225 25 5 4715 4934 21818100 21818323 6.960000e-59 239.0
24 TraesCS2D01G087000 chr5B 86.486 222 23 5 4713 4927 477956013 477956234 2.500000e-58 237.0
25 TraesCS2D01G087000 chr5B 80.308 325 41 15 1240 1551 263521735 263521421 1.950000e-54 224.0
26 TraesCS2D01G087000 chr5B 84.753 223 25 7 4715 4930 445652477 445652257 1.170000e-51 215.0
27 TraesCS2D01G087000 chr5B 91.860 86 7 0 1806 1891 263520803 263520718 2.630000e-23 121.0
28 TraesCS2D01G087000 chr7D 85.780 218 24 5 4715 4927 126678613 126678398 1.950000e-54 224.0
29 TraesCS2D01G087000 chr7D 86.726 113 14 1 4608 4720 104637911 104638022 2.030000e-24 124.0
30 TraesCS2D01G087000 chr7D 95.000 40 1 1 3525 3564 576296176 576296214 1.620000e-05 62.1
31 TraesCS2D01G087000 chr5D 85.321 218 27 5 4715 4927 37120984 37120767 2.520000e-53 220.0
32 TraesCS2D01G087000 chr5D 85.000 220 25 6 4715 4927 397876516 397876734 3.260000e-52 217.0
33 TraesCS2D01G087000 chr5D 86.607 112 15 0 4608 4719 10986528 10986417 2.030000e-24 124.0
34 TraesCS2D01G087000 chr5D 86.087 115 13 2 4607 4719 35181523 35181636 2.630000e-23 121.0
35 TraesCS2D01G087000 chr5D 89.888 89 9 0 1803 1891 240086045 240086133 1.220000e-21 115.0
36 TraesCS2D01G087000 chr5D 95.918 49 2 0 5326 5374 30114798 30114846 4.470000e-11 80.5
37 TraesCS2D01G087000 chr7A 83.404 235 30 7 4715 4940 6657536 6657770 5.460000e-50 209.0
38 TraesCS2D01G087000 chr7A 90.426 94 5 3 5088 5180 515174592 515174682 2.630000e-23 121.0
39 TraesCS2D01G087000 chr7A 90.323 93 5 3 5089 5180 5051928 5052017 9.460000e-23 119.0
40 TraesCS2D01G087000 chr7A 95.833 48 1 1 3517 3564 667224762 667224808 5.780000e-10 76.8
41 TraesCS2D01G087000 chr5A 79.872 313 37 17 1251 1550 313879972 313879673 7.060000e-49 206.0
42 TraesCS2D01G087000 chr5A 91.935 62 5 0 1806 1867 313879064 313879003 2.670000e-13 87.9
43 TraesCS2D01G087000 chr3A 87.963 108 13 0 4609 4716 10411872 10411765 1.570000e-25 128.0
44 TraesCS2D01G087000 chr3D 91.398 93 4 3 5089 5180 614251090 614251179 2.030000e-24 124.0
45 TraesCS2D01G087000 chr3D 95.918 49 2 0 5326 5374 15411439 15411487 4.470000e-11 80.5
46 TraesCS2D01G087000 chr6A 86.087 115 15 1 4605 4719 216460834 216460947 7.310000e-24 122.0
47 TraesCS2D01G087000 chr6A 90.323 93 5 3 5089 5180 28664741 28664652 9.460000e-23 119.0
48 TraesCS2D01G087000 chr1A 92.135 89 4 2 5086 5174 578205114 578205199 7.310000e-24 122.0
49 TraesCS2D01G087000 chr1A 94.231 52 3 0 5326 5377 70900578 70900527 4.470000e-11 80.5
50 TraesCS2D01G087000 chr7B 91.209 91 4 2 5091 5180 720066988 720066901 2.630000e-23 121.0
51 TraesCS2D01G087000 chr4B 90.426 94 5 3 5088 5180 629885256 629885346 2.630000e-23 121.0
52 TraesCS2D01G087000 chr3B 90.323 93 3 5 5089 5179 719815714 719815626 3.400000e-22 117.0
53 TraesCS2D01G087000 chr1D 96.154 52 2 0 5326 5377 222735763 222735712 9.600000e-13 86.1
54 TraesCS2D01G087000 chr4D 95.918 49 2 0 5326 5374 62483509 62483557 4.470000e-11 80.5
55 TraesCS2D01G087000 chrUn 94.231 52 2 1 5326 5377 293303396 293303346 1.610000e-10 78.7
56 TraesCS2D01G087000 chrUn 94.231 52 2 1 5326 5377 293308793 293308743 1.610000e-10 78.7
57 TraesCS2D01G087000 chr4A 94.231 52 2 1 5326 5377 691242094 691242144 1.610000e-10 78.7
58 TraesCS2D01G087000 chr4A 93.878 49 3 0 5326 5374 474781829 474781877 2.080000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G087000 chr2D 37464580 37469957 5377 False 3451.333333 9932 93.213333 1 5378 3 chr2D.!!$F4 5377
1 TraesCS2D01G087000 chr2A 42318105 42323548 5443 False 797.000000 3616 91.864778 1 5323 9 chr2A.!!$F2 5322
2 TraesCS2D01G087000 chr2B 65226352 65230627 4275 False 792.833333 2881 87.796667 8 4714 6 chr2B.!!$F1 4706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 655 0.581529 GCCGCAAAAAGAAAAGGCAC 59.418 50.000 0.00 0.0 43.65 5.01 F
1716 1791 0.607489 AATGTGTCCTGGCTGCTGTC 60.607 55.000 0.00 0.0 0.00 3.51 F
1917 1992 0.106708 TCGCTGTTTCAGAAGCCTGT 59.893 50.000 0.66 0.0 41.16 4.00 F
3241 3412 1.344763 CCAGGTTGAGGAACTTCGTCT 59.655 52.381 11.71 0.0 41.55 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 1972 1.229428 CAGGCTTCTGAAACAGCGAA 58.771 50.0 0.00 0.00 40.86 4.70 R
2971 3097 0.106918 ACCTGGCCTTGAAACGAACA 60.107 50.0 3.32 0.00 0.00 3.18 R
3361 3533 0.179067 TCCTTTGGACACGTGGACAC 60.179 55.0 21.57 7.28 0.00 3.67 R
5124 5534 0.661552 ACATCCGTATCCAGACGACG 59.338 55.0 0.00 0.00 45.82 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 1.836802 TGTTTTGCCCTTTGCTCCTTT 59.163 42.857 0.00 0.00 42.00 3.11
74 75 2.611224 CCCTTTGCTCCTTTGTGATTGC 60.611 50.000 0.00 0.00 0.00 3.56
93 94 2.442272 ATCTAGCTCCGCCACCGT 60.442 61.111 0.00 0.00 0.00 4.83
94 95 2.491022 ATCTAGCTCCGCCACCGTC 61.491 63.158 0.00 0.00 0.00 4.79
114 116 2.322371 GACGAAGAACGACGGTTACT 57.678 50.000 0.00 0.00 45.77 2.24
115 117 2.237526 GACGAAGAACGACGGTTACTC 58.762 52.381 0.00 0.00 45.77 2.59
116 118 1.876156 ACGAAGAACGACGGTTACTCT 59.124 47.619 0.00 0.00 45.77 3.24
117 119 3.067106 ACGAAGAACGACGGTTACTCTA 58.933 45.455 0.00 0.00 45.77 2.43
118 120 3.686726 ACGAAGAACGACGGTTACTCTAT 59.313 43.478 0.00 0.00 45.77 1.98
119 121 4.154918 ACGAAGAACGACGGTTACTCTATT 59.845 41.667 0.00 0.00 45.77 1.73
120 122 4.494764 CGAAGAACGACGGTTACTCTATTG 59.505 45.833 0.00 0.00 45.77 1.90
121 123 4.367386 AGAACGACGGTTACTCTATTGG 57.633 45.455 0.00 0.00 36.24 3.16
122 124 3.760684 AGAACGACGGTTACTCTATTGGT 59.239 43.478 0.00 0.00 36.24 3.67
123 125 3.498927 ACGACGGTTACTCTATTGGTG 57.501 47.619 0.00 0.00 0.00 4.17
124 126 2.821969 ACGACGGTTACTCTATTGGTGT 59.178 45.455 0.00 0.00 0.00 4.16
125 127 3.119708 ACGACGGTTACTCTATTGGTGTC 60.120 47.826 0.00 0.00 0.00 3.67
126 128 3.432782 GACGGTTACTCTATTGGTGTCG 58.567 50.000 0.00 0.00 0.00 4.35
127 129 2.190981 CGGTTACTCTATTGGTGTCGC 58.809 52.381 0.00 0.00 0.00 5.19
128 130 2.416296 CGGTTACTCTATTGGTGTCGCA 60.416 50.000 0.00 0.00 0.00 5.10
129 131 3.187700 GGTTACTCTATTGGTGTCGCAG 58.812 50.000 0.00 0.00 0.00 5.18
130 132 3.368116 GGTTACTCTATTGGTGTCGCAGT 60.368 47.826 0.00 0.00 0.00 4.40
131 133 4.243270 GTTACTCTATTGGTGTCGCAGTT 58.757 43.478 0.00 0.00 0.00 3.16
132 134 2.688507 ACTCTATTGGTGTCGCAGTTG 58.311 47.619 0.00 0.00 0.00 3.16
151 153 7.584123 CGCAGTTGTATAGTTTATGAAGAATGC 59.416 37.037 0.00 0.00 0.00 3.56
154 156 9.890629 AGTTGTATAGTTTATGAAGAATGCTCA 57.109 29.630 0.00 0.00 0.00 4.26
168 170 5.888105 AGAATGCTCATTTCTATGTTGTGC 58.112 37.500 0.00 0.00 33.34 4.57
177 179 7.829725 TCATTTCTATGTTGTGCTTTTGCTAT 58.170 30.769 0.00 0.00 38.43 2.97
228 233 2.930230 ATCAAATCGCGCGTATCTTG 57.070 45.000 30.98 24.81 0.00 3.02
294 301 4.001618 TGCACGCTGATATTAGGCAATA 57.998 40.909 0.00 0.00 0.00 1.90
324 331 4.067972 ACACAATAATAGTACCCCTGCG 57.932 45.455 0.00 0.00 0.00 5.18
325 332 3.453353 ACACAATAATAGTACCCCTGCGT 59.547 43.478 0.00 0.00 0.00 5.24
326 333 4.056050 CACAATAATAGTACCCCTGCGTC 58.944 47.826 0.00 0.00 0.00 5.19
327 334 3.070590 ACAATAATAGTACCCCTGCGTCC 59.929 47.826 0.00 0.00 0.00 4.79
328 335 2.457813 TAATAGTACCCCTGCGTCCA 57.542 50.000 0.00 0.00 0.00 4.02
329 336 1.120530 AATAGTACCCCTGCGTCCAG 58.879 55.000 0.00 0.00 38.85 3.86
340 347 2.966309 GCGTCCAGCGTCCCAAAAG 61.966 63.158 0.00 0.00 43.66 2.27
449 457 5.105432 GGGACGAAGGTAATATTAGCTAGGG 60.105 48.000 23.72 17.93 40.32 3.53
464 472 8.996651 ATTAGCTAGGGCATTAATTTTGTACT 57.003 30.769 0.00 0.00 41.70 2.73
502 510 8.430063 ACACAATACGTATGCTATTAATTACGC 58.570 33.333 9.24 7.08 34.71 4.42
519 538 2.754472 ACGCGCTAAATATCATGAGCA 58.246 42.857 5.73 0.00 34.49 4.26
555 574 4.493220 GCAATCTAAGTCGCTCAATGACAC 60.493 45.833 0.00 0.00 38.83 3.67
560 579 0.924090 GTCGCTCAATGACACGATCC 59.076 55.000 6.85 0.00 36.85 3.36
579 598 3.390135 TCCGATGGACGAGATTAATTGC 58.610 45.455 0.00 0.00 45.77 3.56
583 602 5.408299 CCGATGGACGAGATTAATTGCAATA 59.592 40.000 13.39 0.00 45.77 1.90
584 603 6.092670 CCGATGGACGAGATTAATTGCAATAT 59.907 38.462 13.39 3.03 45.77 1.28
598 617 9.820229 TTAATTGCAATATAGTATTAGCGCAAC 57.180 29.630 13.39 1.65 40.53 4.17
609 628 4.701956 ATTAGCGCAACTAGCAAACAAT 57.298 36.364 11.47 0.00 46.13 2.71
627 646 5.341407 ACAATAATGTTTGCCGCAAAAAG 57.659 34.783 19.87 5.50 35.91 2.27
628 647 5.053145 ACAATAATGTTTGCCGCAAAAAGA 58.947 33.333 19.87 7.85 35.91 2.52
632 651 4.534794 ATGTTTGCCGCAAAAAGAAAAG 57.465 36.364 19.87 0.00 35.03 2.27
636 655 0.581529 GCCGCAAAAAGAAAAGGCAC 59.418 50.000 0.00 0.00 43.65 5.01
646 665 7.354257 CAAAAAGAAAAGGCACACAATAATGG 58.646 34.615 0.00 0.00 0.00 3.16
661 680 7.893302 ACACAATAATGGGACTTCTATCCAAAA 59.107 33.333 0.00 0.00 40.96 2.44
681 704 6.016360 CCAAAATGGATAAAGTCGGCATGATA 60.016 38.462 0.00 0.00 40.96 2.15
730 753 5.510179 CCGTTCCTACTAAAGAACCACAGAA 60.510 44.000 0.00 0.00 39.36 3.02
732 755 6.649557 CGTTCCTACTAAAGAACCACAGAAAT 59.350 38.462 0.00 0.00 39.36 2.17
769 795 3.052455 TCTCTTTGATAACGCCAAGCA 57.948 42.857 0.00 0.00 0.00 3.91
1145 1190 1.449601 CATCTGGGTCGTTTCCGGG 60.450 63.158 0.00 0.00 33.95 5.73
1146 1191 1.916777 ATCTGGGTCGTTTCCGGGT 60.917 57.895 0.00 0.00 33.95 5.28
1147 1192 2.180159 ATCTGGGTCGTTTCCGGGTG 62.180 60.000 0.00 0.00 33.95 4.61
1159 1204 2.398554 CCGGGTGCTGATTTCGTGG 61.399 63.158 0.00 0.00 0.00 4.94
1165 1210 3.049912 GGTGCTGATTTCGTGGTTTTTC 58.950 45.455 0.00 0.00 0.00 2.29
1166 1213 3.490078 GGTGCTGATTTCGTGGTTTTTCA 60.490 43.478 0.00 0.00 0.00 2.69
1168 1215 4.148696 GTGCTGATTTCGTGGTTTTTCATG 59.851 41.667 0.00 0.00 0.00 3.07
1169 1216 4.202101 TGCTGATTTCGTGGTTTTTCATGT 60.202 37.500 0.00 0.00 0.00 3.21
1397 1460 1.447838 GGAAGAGCGCCGATGTTGA 60.448 57.895 2.29 0.00 0.00 3.18
1409 1472 2.501223 GATGTTGACGACGAGGGGCA 62.501 60.000 0.00 0.00 0.00 5.36
1410 1473 1.899437 ATGTTGACGACGAGGGGCAT 61.899 55.000 0.00 0.00 0.00 4.40
1599 1662 2.435586 CAGGAGCTCAAGGCCGTG 60.436 66.667 17.19 13.08 43.05 4.94
1600 1663 4.400961 AGGAGCTCAAGGCCGTGC 62.401 66.667 17.19 8.91 43.05 5.34
1601 1664 4.400961 GGAGCTCAAGGCCGTGCT 62.401 66.667 17.19 13.70 43.05 4.40
1716 1791 0.607489 AATGTGTCCTGGCTGCTGTC 60.607 55.000 0.00 0.00 0.00 3.51
1767 1842 7.386848 CAGGTAACCTCTCAAACGAGAATTTTA 59.613 37.037 0.00 0.00 39.06 1.52
1797 1872 3.007940 TGTGCAGTCCAATGCTAGTACTT 59.992 43.478 0.00 0.00 46.63 2.24
1802 1877 5.978322 GCAGTCCAATGCTAGTACTTACTAC 59.022 44.000 0.00 0.00 43.07 2.73
1879 1954 4.486090 GTGTAGCAGATTCTGTCGAGAAA 58.514 43.478 14.90 0.00 41.64 2.52
1885 1960 4.926238 GCAGATTCTGTCGAGAAAAAGAGA 59.074 41.667 14.90 0.00 41.64 3.10
1917 1992 0.106708 TCGCTGTTTCAGAAGCCTGT 59.893 50.000 0.66 0.00 41.16 4.00
1966 2041 3.470567 GTGCCGTCTTCGTCAGCG 61.471 66.667 0.00 0.00 39.92 5.18
2108 2183 4.225942 ACTTCAGGAGATGTGAAATAGGCA 59.774 41.667 0.00 0.00 33.56 4.75
2187 2262 1.605058 GAGTCTGCAAGTAGGCCGGA 61.605 60.000 5.05 0.00 33.76 5.14
2215 2290 8.970859 AAGATATTCATCCTAAGGTGAACAAG 57.029 34.615 3.67 0.00 37.19 3.16
2239 2314 1.452145 GGCGGACAAGCAAGGTTTGA 61.452 55.000 0.00 0.00 39.27 2.69
2268 2343 7.643569 TGCTGATACATGGTGTGAATTTAAT 57.356 32.000 0.00 0.00 0.00 1.40
2291 2366 5.424757 TGATATGGAGTTTAACAGTTCCGG 58.575 41.667 0.00 0.00 32.27 5.14
2358 2433 2.092699 GGTATTCCAGAAGCAGCTTCCT 60.093 50.000 28.34 14.84 40.98 3.36
2360 2435 2.664402 TTCCAGAAGCAGCTTCCTTT 57.336 45.000 28.34 10.33 40.98 3.11
2391 2466 3.181445 ACAGCCTGAACAAAGGTATCACA 60.181 43.478 0.00 0.00 39.75 3.58
2393 2468 2.159627 GCCTGAACAAAGGTATCACACG 59.840 50.000 0.00 0.00 39.75 4.49
2394 2469 3.659786 CCTGAACAAAGGTATCACACGA 58.340 45.455 0.00 0.00 32.17 4.35
2403 2478 5.880054 AAGGTATCACACGAAATCCAAAG 57.120 39.130 0.00 0.00 0.00 2.77
2404 2479 4.906618 AGGTATCACACGAAATCCAAAGT 58.093 39.130 0.00 0.00 0.00 2.66
2468 2571 9.757227 TTACGTTCCAGAAATGAAAATTCAAAT 57.243 25.926 0.00 0.00 41.13 2.32
2489 2592 4.970662 TCATATGGCTTTTTGCTCTGAC 57.029 40.909 2.13 0.00 42.39 3.51
2642 2748 2.251371 GTTCAACTTCGCCACCGC 59.749 61.111 0.00 0.00 0.00 5.68
2660 2766 3.177600 CGCATCCGGAAACCAGTG 58.822 61.111 9.01 1.22 0.00 3.66
2789 2912 9.226606 TGATAAATTCTATAAAGGCCGGTAATG 57.773 33.333 1.90 0.00 0.00 1.90
2824 2947 7.813852 AAGAACTTTACTCGCATAACTAGTG 57.186 36.000 0.00 0.00 0.00 2.74
2835 2958 9.464714 ACTCGCATAACTAGTGATAGTTATTTG 57.535 33.333 14.87 11.42 45.74 2.32
2858 2981 9.920133 TTTGATCACTCTCTAATCAGTATATGC 57.080 33.333 0.00 0.00 31.50 3.14
2971 3097 7.223260 TGAATTGAAAGAAATGCATCAGAGT 57.777 32.000 0.00 0.00 0.00 3.24
3098 3224 8.988064 TTTGAGTCATGTCTTATTAGTCTCAC 57.012 34.615 0.00 0.00 0.00 3.51
3099 3225 6.786207 TGAGTCATGTCTTATTAGTCTCACG 58.214 40.000 0.00 0.00 0.00 4.35
3241 3412 1.344763 CCAGGTTGAGGAACTTCGTCT 59.655 52.381 11.71 0.00 41.55 4.18
3247 3418 3.361281 TGAGGAACTTCGTCTAGGCTA 57.639 47.619 11.71 0.00 41.55 3.93
3266 3437 7.929941 AGGCTAGTTAAGAATTTCTCCAAAG 57.070 36.000 0.00 0.00 0.00 2.77
3339 3511 4.669318 AGTACGTATCAGGTTGATGAACG 58.331 43.478 0.00 10.96 37.70 3.95
3347 3519 3.135225 CAGGTTGATGAACGTTGTGGTA 58.865 45.455 5.00 0.00 32.28 3.25
3361 3533 4.570772 CGTTGTGGTAGGTGGATAAGAATG 59.429 45.833 0.00 0.00 0.00 2.67
3391 3563 4.249661 GTGTCCAAAGGAAAGAGAGCTAG 58.750 47.826 0.00 0.00 31.38 3.42
3394 3566 5.115480 GTCCAAAGGAAAGAGAGCTAGATG 58.885 45.833 0.00 0.00 31.38 2.90
3397 3569 6.440647 TCCAAAGGAAAGAGAGCTAGATGTTA 59.559 38.462 0.00 0.00 0.00 2.41
3399 3571 7.772757 CCAAAGGAAAGAGAGCTAGATGTTAAT 59.227 37.037 0.00 0.00 0.00 1.40
3403 3575 7.772757 AGGAAAGAGAGCTAGATGTTAATTTGG 59.227 37.037 0.00 0.00 0.00 3.28
3404 3576 7.554476 GGAAAGAGAGCTAGATGTTAATTTGGT 59.446 37.037 0.00 0.00 0.00 3.67
3405 3577 8.499403 AAAGAGAGCTAGATGTTAATTTGGTC 57.501 34.615 0.00 0.00 0.00 4.02
3406 3578 6.587273 AGAGAGCTAGATGTTAATTTGGTCC 58.413 40.000 0.00 0.00 0.00 4.46
3407 3579 6.156949 AGAGAGCTAGATGTTAATTTGGTCCA 59.843 38.462 0.00 0.00 0.00 4.02
3408 3580 6.904626 AGAGCTAGATGTTAATTTGGTCCAT 58.095 36.000 0.00 0.00 0.00 3.41
3409 3581 7.349598 AGAGCTAGATGTTAATTTGGTCCATT 58.650 34.615 0.00 0.00 0.00 3.16
3410 3582 7.284034 AGAGCTAGATGTTAATTTGGTCCATTG 59.716 37.037 0.00 0.00 0.00 2.82
3411 3583 6.322201 AGCTAGATGTTAATTTGGTCCATTGG 59.678 38.462 0.00 0.00 0.00 3.16
3413 3585 6.933514 AGATGTTAATTTGGTCCATTGGTT 57.066 33.333 1.86 0.00 0.00 3.67
3414 3586 9.184523 CTAGATGTTAATTTGGTCCATTGGTTA 57.815 33.333 1.86 0.00 0.00 2.85
3416 3588 6.347859 TGTTAATTTGGTCCATTGGTTACC 57.652 37.500 1.86 4.61 0.00 2.85
3418 3590 6.015010 TGTTAATTTGGTCCATTGGTTACCTG 60.015 38.462 13.24 0.00 34.23 4.00
3511 3811 5.747951 CTAACTGGTTAGTACTACCTCCG 57.252 47.826 17.17 11.98 38.13 4.63
3514 3814 5.379706 ACTGGTTAGTACTACCTCCGTAT 57.620 43.478 17.17 4.14 34.74 3.06
3515 3815 5.372373 ACTGGTTAGTACTACCTCCGTATC 58.628 45.833 17.17 0.00 34.74 2.24
3518 3818 6.186957 TGGTTAGTACTACCTCCGTATCAAA 58.813 40.000 17.17 0.00 36.60 2.69
3519 3819 6.095440 TGGTTAGTACTACCTCCGTATCAAAC 59.905 42.308 17.17 5.73 36.60 2.93
3520 3820 6.319911 GGTTAGTACTACCTCCGTATCAAACT 59.680 42.308 0.91 0.00 32.75 2.66
3521 3821 7.499232 GGTTAGTACTACCTCCGTATCAAACTA 59.501 40.741 0.91 0.00 32.75 2.24
3522 3822 8.555361 GTTAGTACTACCTCCGTATCAAACTAG 58.445 40.741 0.91 0.00 0.00 2.57
3523 3823 4.915158 ACTACCTCCGTATCAAACTAGC 57.085 45.455 0.00 0.00 0.00 3.42
3524 3824 3.635836 ACTACCTCCGTATCAAACTAGCC 59.364 47.826 0.00 0.00 0.00 3.93
3525 3825 2.748388 ACCTCCGTATCAAACTAGCCT 58.252 47.619 0.00 0.00 0.00 4.58
3526 3826 3.907221 ACCTCCGTATCAAACTAGCCTA 58.093 45.455 0.00 0.00 0.00 3.93
3527 3827 3.635836 ACCTCCGTATCAAACTAGCCTAC 59.364 47.826 0.00 0.00 0.00 3.18
3528 3828 3.635373 CCTCCGTATCAAACTAGCCTACA 59.365 47.826 0.00 0.00 0.00 2.74
3529 3829 4.098960 CCTCCGTATCAAACTAGCCTACAA 59.901 45.833 0.00 0.00 0.00 2.41
3530 3830 5.394883 CCTCCGTATCAAACTAGCCTACAAA 60.395 44.000 0.00 0.00 0.00 2.83
3531 3831 6.040209 TCCGTATCAAACTAGCCTACAAAA 57.960 37.500 0.00 0.00 0.00 2.44
3532 3832 6.465948 TCCGTATCAAACTAGCCTACAAAAA 58.534 36.000 0.00 0.00 0.00 1.94
3589 3889 8.594550 AGTTAAGTTTGGAGAATAGTTGCTAGA 58.405 33.333 0.00 0.00 0.00 2.43
3617 3917 4.437682 AGTTGAGGAACTTTGTCATGGA 57.562 40.909 0.00 0.00 39.56 3.41
3672 4042 5.711976 CACAACTCCCTTTTGATCCATACTT 59.288 40.000 0.00 0.00 0.00 2.24
3673 4043 6.209391 CACAACTCCCTTTTGATCCATACTTT 59.791 38.462 0.00 0.00 0.00 2.66
3674 4044 6.782494 ACAACTCCCTTTTGATCCATACTTTT 59.218 34.615 0.00 0.00 0.00 2.27
3675 4045 7.947890 ACAACTCCCTTTTGATCCATACTTTTA 59.052 33.333 0.00 0.00 0.00 1.52
3676 4046 8.462016 CAACTCCCTTTTGATCCATACTTTTAG 58.538 37.037 0.00 0.00 0.00 1.85
3677 4047 6.603599 ACTCCCTTTTGATCCATACTTTTAGC 59.396 38.462 0.00 0.00 0.00 3.09
3678 4048 5.891551 TCCCTTTTGATCCATACTTTTAGCC 59.108 40.000 0.00 0.00 0.00 3.93
3679 4049 5.656416 CCCTTTTGATCCATACTTTTAGCCA 59.344 40.000 0.00 0.00 0.00 4.75
3680 4050 6.405842 CCCTTTTGATCCATACTTTTAGCCAC 60.406 42.308 0.00 0.00 0.00 5.01
3681 4051 5.811399 TTTGATCCATACTTTTAGCCACG 57.189 39.130 0.00 0.00 0.00 4.94
3682 4052 4.481368 TGATCCATACTTTTAGCCACGT 57.519 40.909 0.00 0.00 0.00 4.49
3683 4053 4.188462 TGATCCATACTTTTAGCCACGTG 58.812 43.478 9.08 9.08 0.00 4.49
3772 4142 7.123997 TGAACAATACATTGGTATGCCTGAAAT 59.876 33.333 0.16 0.00 37.93 2.17
3804 4174 8.805175 TGGATCATTTTGAAATTGTGACATAGT 58.195 29.630 0.00 0.00 0.00 2.12
3805 4175 9.079833 GGATCATTTTGAAATTGTGACATAGTG 57.920 33.333 0.00 0.00 0.00 2.74
3806 4176 8.991243 ATCATTTTGAAATTGTGACATAGTGG 57.009 30.769 0.00 0.00 0.00 4.00
3807 4177 6.867816 TCATTTTGAAATTGTGACATAGTGGC 59.132 34.615 0.00 0.00 0.00 5.01
3808 4178 5.781210 TTTGAAATTGTGACATAGTGGCA 57.219 34.783 0.00 0.00 29.15 4.92
3809 4179 5.981088 TTGAAATTGTGACATAGTGGCAT 57.019 34.783 0.00 0.00 37.93 4.40
3810 4180 5.981088 TGAAATTGTGACATAGTGGCATT 57.019 34.783 0.00 0.00 37.93 3.56
3813 4183 8.065473 TGAAATTGTGACATAGTGGCATTTAT 57.935 30.769 0.00 0.00 37.93 1.40
3828 4198 8.559536 AGTGGCATTTATTATTTATGACAGTCG 58.440 33.333 0.00 0.00 36.46 4.18
3830 4200 7.040755 TGGCATTTATTATTTATGACAGTCGGG 60.041 37.037 0.00 0.00 32.54 5.14
3831 4201 7.040686 GGCATTTATTATTTATGACAGTCGGGT 60.041 37.037 0.00 0.00 0.00 5.28
3832 4202 8.995220 GCATTTATTATTTATGACAGTCGGGTA 58.005 33.333 0.00 0.00 0.00 3.69
3946 4316 9.856162 AGTTTATGGAAGTTGAAACTACCTAAA 57.144 29.630 0.00 1.57 39.67 1.85
3990 4360 6.887626 TGGGTGAGAACCTTTATAAACAAC 57.112 37.500 0.00 0.00 0.00 3.32
3991 4361 6.607019 TGGGTGAGAACCTTTATAAACAACT 58.393 36.000 0.00 0.00 0.00 3.16
4003 4373 9.039870 CCTTTATAAACAACTGCTAGATGAGAG 57.960 37.037 0.00 0.00 0.00 3.20
4013 4383 2.605366 GCTAGATGAGAGAAACAACGGC 59.395 50.000 0.00 0.00 0.00 5.68
4014 4384 2.839486 AGATGAGAGAAACAACGGCA 57.161 45.000 0.00 0.00 0.00 5.69
4032 4402 2.223226 GGCATTTGTGCAAACAAACCAC 60.223 45.455 6.19 0.23 41.63 4.16
4048 4418 1.133915 ACCACAATCACCGTTTGTCCT 60.134 47.619 0.00 0.00 35.18 3.85
4050 4420 2.742053 CCACAATCACCGTTTGTCCTAG 59.258 50.000 0.00 0.00 35.18 3.02
4073 4443 4.201910 GCAAAACTAGCAAGACTGTTGACA 60.202 41.667 0.00 0.00 0.00 3.58
4104 4474 1.990799 CAATGGTGATGCAGCAACAG 58.009 50.000 28.27 11.95 44.96 3.16
4107 4477 2.503375 GTGATGCAGCAACAGCGC 60.503 61.111 6.05 0.00 33.85 5.92
4197 4567 9.733556 TGATGTAAAATTTTCTAGCCTGTTCTA 57.266 29.630 6.72 0.00 0.00 2.10
4246 4616 1.284785 CAAGGGTCTTAATGCAGGGGA 59.715 52.381 0.00 0.00 0.00 4.81
4273 4643 4.128388 CCCACCAAAATCCGCCGC 62.128 66.667 0.00 0.00 0.00 6.53
4305 4675 2.573369 AGACTGAATGATGATGCCAGC 58.427 47.619 0.00 0.00 0.00 4.85
4322 4692 2.388232 GCGACCCACACGGAATGAC 61.388 63.158 0.00 0.00 34.64 3.06
4592 4968 5.893687 TGCGTTGAGAAGTATTATTCCGTA 58.106 37.500 0.00 0.00 0.00 4.02
4656 5032 2.223971 CGCGGAGATACCAATTACACCT 60.224 50.000 0.00 0.00 38.90 4.00
4702 5078 5.734855 GTAAAGACATTACGGATGCACAT 57.265 39.130 0.00 0.00 39.47 3.21
4866 5244 7.687445 TCATACGATGAGATGTGAACAAAATG 58.313 34.615 0.00 0.00 33.59 2.32
4888 5266 5.263599 TGTGGTCATAGCCATTCAAGATTT 58.736 37.500 0.00 0.00 41.08 2.17
4919 5302 2.624264 GTCGAAACGCACGTGCTT 59.376 55.556 35.27 26.07 39.32 3.91
4920 5303 1.011574 GTCGAAACGCACGTGCTTT 60.012 52.632 35.27 30.11 39.32 3.51
4923 5306 0.223513 CGAAACGCACGTGCTTTTTG 59.776 50.000 35.72 34.06 41.60 2.44
4924 5307 0.044246 GAAACGCACGTGCTTTTTGC 60.044 50.000 35.72 24.38 41.60 3.68
4925 5308 0.457681 AAACGCACGTGCTTTTTGCT 60.458 45.000 31.94 15.88 39.05 3.91
4926 5309 0.378962 AACGCACGTGCTTTTTGCTA 59.621 45.000 35.27 0.00 43.37 3.49
4927 5310 0.316689 ACGCACGTGCTTTTTGCTAC 60.317 50.000 35.27 5.71 43.37 3.58
5092 5502 2.470821 AGCACGTGTGTTGAGAAGTAC 58.529 47.619 18.38 0.00 0.00 2.73
5094 5504 2.471743 GCACGTGTGTTGAGAAGTACTC 59.528 50.000 18.38 0.00 45.11 2.59
5095 5505 3.050619 CACGTGTGTTGAGAAGTACTCC 58.949 50.000 7.58 0.00 44.34 3.85
5096 5506 2.035576 ACGTGTGTTGAGAAGTACTCCC 59.964 50.000 0.00 0.00 44.34 4.30
5097 5507 2.296471 CGTGTGTTGAGAAGTACTCCCT 59.704 50.000 0.00 0.00 44.34 4.20
5098 5508 3.612004 CGTGTGTTGAGAAGTACTCCCTC 60.612 52.174 14.83 14.83 44.34 4.30
5099 5509 2.897969 TGTGTTGAGAAGTACTCCCTCC 59.102 50.000 17.51 7.99 44.34 4.30
5100 5510 2.094649 GTGTTGAGAAGTACTCCCTCCG 60.095 54.545 17.51 0.00 44.34 4.63
5101 5511 2.169330 GTTGAGAAGTACTCCCTCCGT 58.831 52.381 17.51 0.00 44.34 4.69
5102 5512 2.125773 TGAGAAGTACTCCCTCCGTC 57.874 55.000 17.51 2.42 44.34 4.79
5103 5513 1.634459 TGAGAAGTACTCCCTCCGTCT 59.366 52.381 17.51 6.72 44.34 4.18
5104 5514 2.291365 GAGAAGTACTCCCTCCGTCTC 58.709 57.143 12.00 7.96 39.53 3.36
5105 5515 1.634459 AGAAGTACTCCCTCCGTCTCA 59.366 52.381 0.00 0.00 0.00 3.27
5106 5516 2.041350 AGAAGTACTCCCTCCGTCTCAA 59.959 50.000 0.00 0.00 0.00 3.02
5107 5517 2.599408 AGTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
5108 5518 2.885616 AGTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
5109 5519 3.442076 AGTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
5110 5520 3.838903 AGTACTCCCTCCGTCTCAAAATT 59.161 43.478 0.00 0.00 0.00 1.82
5111 5521 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
5112 5522 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
5113 5523 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
5114 5524 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
5115 5525 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
5116 5526 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
5117 5527 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
5118 5528 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
5119 5529 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
5120 5530 6.426937 CCTCCGTCTCAAAATTCTTGTCTTAA 59.573 38.462 0.00 0.00 0.00 1.85
5121 5531 7.041372 CCTCCGTCTCAAAATTCTTGTCTTAAA 60.041 37.037 0.00 0.00 0.00 1.52
5122 5532 8.391075 TCCGTCTCAAAATTCTTGTCTTAAAT 57.609 30.769 0.00 0.00 0.00 1.40
5123 5533 8.846211 TCCGTCTCAAAATTCTTGTCTTAAATT 58.154 29.630 0.00 0.00 0.00 1.82
5124 5534 9.118236 CCGTCTCAAAATTCTTGTCTTAAATTC 57.882 33.333 0.00 0.00 0.00 2.17
5125 5535 8.831372 CGTCTCAAAATTCTTGTCTTAAATTCG 58.169 33.333 0.00 0.00 0.00 3.34
5126 5536 9.665264 GTCTCAAAATTCTTGTCTTAAATTCGT 57.335 29.630 0.00 0.00 0.00 3.85
5127 5537 9.878599 TCTCAAAATTCTTGTCTTAAATTCGTC 57.121 29.630 0.00 0.00 0.00 4.20
5128 5538 8.708075 TCAAAATTCTTGTCTTAAATTCGTCG 57.292 30.769 0.00 0.00 0.00 5.12
5129 5539 8.339714 TCAAAATTCTTGTCTTAAATTCGTCGT 58.660 29.630 0.00 0.00 0.00 4.34
5130 5540 8.618952 CAAAATTCTTGTCTTAAATTCGTCGTC 58.381 33.333 0.00 0.00 0.00 4.20
5131 5541 7.653767 AATTCTTGTCTTAAATTCGTCGTCT 57.346 32.000 0.00 0.00 0.00 4.18
5132 5542 6.448053 TTCTTGTCTTAAATTCGTCGTCTG 57.552 37.500 0.00 0.00 0.00 3.51
5133 5543 4.921515 TCTTGTCTTAAATTCGTCGTCTGG 59.078 41.667 0.00 0.00 0.00 3.86
5134 5544 4.508461 TGTCTTAAATTCGTCGTCTGGA 57.492 40.909 0.00 0.00 0.00 3.86
5135 5545 5.068234 TGTCTTAAATTCGTCGTCTGGAT 57.932 39.130 0.00 0.00 0.00 3.41
5136 5546 6.198650 TGTCTTAAATTCGTCGTCTGGATA 57.801 37.500 0.00 0.00 0.00 2.59
5137 5547 6.032094 TGTCTTAAATTCGTCGTCTGGATAC 58.968 40.000 0.00 0.00 0.00 2.24
5138 5548 5.170981 GTCTTAAATTCGTCGTCTGGATACG 59.829 44.000 0.00 0.00 44.19 3.06
5139 5549 2.486951 AATTCGTCGTCTGGATACGG 57.513 50.000 0.00 0.00 43.05 4.02
5160 5570 7.559590 ACGGATGTATCTACTACTAAAACGT 57.440 36.000 0.00 0.00 0.00 3.99
5161 5571 7.412853 ACGGATGTATCTACTACTAAAACGTG 58.587 38.462 0.00 0.00 0.00 4.49
5162 5572 7.280876 ACGGATGTATCTACTACTAAAACGTGA 59.719 37.037 0.00 0.00 0.00 4.35
5163 5573 7.585573 CGGATGTATCTACTACTAAAACGTGAC 59.414 40.741 0.00 0.00 0.00 3.67
5164 5574 8.619546 GGATGTATCTACTACTAAAACGTGACT 58.380 37.037 0.00 0.00 0.00 3.41
5166 5576 9.784680 ATGTATCTACTACTAAAACGTGACTTG 57.215 33.333 0.00 0.00 0.00 3.16
5167 5577 9.002600 TGTATCTACTACTAAAACGTGACTTGA 57.997 33.333 0.00 0.00 0.00 3.02
5171 5581 9.002600 TCTACTACTAAAACGTGACTTGATACA 57.997 33.333 0.00 0.00 0.00 2.29
5172 5582 9.784680 CTACTACTAAAACGTGACTTGATACAT 57.215 33.333 0.00 0.00 0.00 2.29
5173 5583 8.684973 ACTACTAAAACGTGACTTGATACATC 57.315 34.615 0.00 0.00 0.00 3.06
5174 5584 8.301720 ACTACTAAAACGTGACTTGATACATCA 58.698 33.333 0.00 0.00 34.44 3.07
5175 5585 9.302345 CTACTAAAACGTGACTTGATACATCAT 57.698 33.333 0.00 0.00 36.56 2.45
5177 5587 9.817809 ACTAAAACGTGACTTGATACATCATAT 57.182 29.630 0.00 0.00 36.56 1.78
5224 5634 3.950397 TGGAGCAATTGTCTTATTCCGT 58.050 40.909 7.40 0.00 0.00 4.69
5225 5635 3.689161 TGGAGCAATTGTCTTATTCCGTG 59.311 43.478 7.40 0.00 0.00 4.94
5329 5739 3.389741 GCAATGTCGTGCAAAGAGG 57.610 52.632 0.00 0.00 44.29 3.69
5330 5740 0.109597 GCAATGTCGTGCAAAGAGGG 60.110 55.000 0.00 0.00 44.29 4.30
5331 5741 1.522668 CAATGTCGTGCAAAGAGGGA 58.477 50.000 0.00 0.00 0.00 4.20
5332 5742 1.197721 CAATGTCGTGCAAAGAGGGAC 59.802 52.381 0.00 0.00 0.00 4.46
5333 5743 0.396435 ATGTCGTGCAAAGAGGGACA 59.604 50.000 0.00 0.00 41.34 4.02
5334 5744 0.179234 TGTCGTGCAAAGAGGGACAA 59.821 50.000 0.00 0.00 34.94 3.18
5335 5745 1.202758 TGTCGTGCAAAGAGGGACAAT 60.203 47.619 0.00 0.00 34.94 2.71
5336 5746 1.197721 GTCGTGCAAAGAGGGACAATG 59.802 52.381 0.00 0.00 0.00 2.82
5337 5747 0.523072 CGTGCAAAGAGGGACAATGG 59.477 55.000 0.00 0.00 0.00 3.16
5338 5748 1.620822 GTGCAAAGAGGGACAATGGT 58.379 50.000 0.00 0.00 0.00 3.55
5339 5749 2.790433 GTGCAAAGAGGGACAATGGTA 58.210 47.619 0.00 0.00 0.00 3.25
5340 5750 3.356290 GTGCAAAGAGGGACAATGGTAT 58.644 45.455 0.00 0.00 0.00 2.73
5341 5751 3.378427 GTGCAAAGAGGGACAATGGTATC 59.622 47.826 0.00 0.00 0.00 2.24
5342 5752 2.952310 GCAAAGAGGGACAATGGTATCC 59.048 50.000 0.00 0.00 0.00 2.59
5343 5753 3.372025 GCAAAGAGGGACAATGGTATCCT 60.372 47.826 0.00 0.00 35.15 3.24
5344 5754 4.455606 CAAAGAGGGACAATGGTATCCTC 58.544 47.826 12.14 12.14 42.91 3.71
5345 5755 3.421394 AGAGGGACAATGGTATCCTCA 57.579 47.619 18.98 0.00 44.02 3.86
5346 5756 3.312890 AGAGGGACAATGGTATCCTCAG 58.687 50.000 18.98 0.00 44.02 3.35
5347 5757 1.771255 AGGGACAATGGTATCCTCAGC 59.229 52.381 0.00 0.00 35.15 4.26
5348 5758 1.202818 GGGACAATGGTATCCTCAGCC 60.203 57.143 0.00 0.00 35.15 4.85
5349 5759 1.202818 GGACAATGGTATCCTCAGCCC 60.203 57.143 0.00 0.00 31.75 5.19
5350 5760 1.490490 GACAATGGTATCCTCAGCCCA 59.510 52.381 0.00 0.00 0.00 5.36
5351 5761 1.212935 ACAATGGTATCCTCAGCCCAC 59.787 52.381 0.00 0.00 0.00 4.61
5352 5762 0.846693 AATGGTATCCTCAGCCCACC 59.153 55.000 0.00 0.00 0.00 4.61
5353 5763 0.327480 ATGGTATCCTCAGCCCACCA 60.327 55.000 0.00 0.00 43.10 4.17
5354 5764 0.982852 TGGTATCCTCAGCCCACCAG 60.983 60.000 0.00 0.00 34.40 4.00
5355 5765 1.700042 GGTATCCTCAGCCCACCAGG 61.700 65.000 0.00 0.00 39.47 4.45
5356 5766 0.691078 GTATCCTCAGCCCACCAGGA 60.691 60.000 0.00 0.00 40.70 3.86
5357 5767 0.268869 TATCCTCAGCCCACCAGGAT 59.731 55.000 5.10 5.10 46.79 3.24
5358 5768 0.625683 ATCCTCAGCCCACCAGGATT 60.626 55.000 0.00 0.00 43.40 3.01
5359 5769 1.225704 CCTCAGCCCACCAGGATTC 59.774 63.158 0.00 0.00 38.24 2.52
5360 5770 1.565390 CCTCAGCCCACCAGGATTCA 61.565 60.000 0.00 0.00 38.24 2.57
5361 5771 0.329261 CTCAGCCCACCAGGATTCAA 59.671 55.000 0.00 0.00 38.24 2.69
5362 5772 0.329261 TCAGCCCACCAGGATTCAAG 59.671 55.000 0.00 0.00 38.24 3.02
5363 5773 0.038744 CAGCCCACCAGGATTCAAGT 59.961 55.000 0.00 0.00 38.24 3.16
5364 5774 0.329596 AGCCCACCAGGATTCAAGTC 59.670 55.000 0.00 0.00 38.24 3.01
5365 5775 0.681243 GCCCACCAGGATTCAAGTCC 60.681 60.000 0.00 0.00 38.24 3.85
5371 5781 3.965888 AGGATTCAAGTCCTGGTGC 57.034 52.632 0.00 0.00 46.76 5.01
5372 5782 1.366319 AGGATTCAAGTCCTGGTGCT 58.634 50.000 0.00 0.00 46.76 4.40
5373 5783 1.280421 AGGATTCAAGTCCTGGTGCTC 59.720 52.381 0.00 0.00 46.76 4.26
5374 5784 1.003580 GGATTCAAGTCCTGGTGCTCA 59.996 52.381 0.00 0.00 35.32 4.26
5375 5785 2.079925 GATTCAAGTCCTGGTGCTCAC 58.920 52.381 0.00 0.00 0.00 3.51
5376 5786 0.836606 TTCAAGTCCTGGTGCTCACA 59.163 50.000 2.21 0.00 0.00 3.58
5377 5787 0.106708 TCAAGTCCTGGTGCTCACAC 59.893 55.000 2.21 0.00 46.66 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 1.202568 CGGAGCTAGATGGCAATCACA 60.203 52.381 3.34 0.00 35.03 3.58
94 95 0.970606 GTAACCGTCGTTCTTCGTCG 59.029 55.000 0.00 0.00 46.59 5.12
98 99 4.797349 CCAATAGAGTAACCGTCGTTCTTC 59.203 45.833 0.00 0.00 33.17 2.87
107 109 2.190981 GCGACACCAATAGAGTAACCG 58.809 52.381 0.00 0.00 0.00 4.44
113 115 2.688507 ACAACTGCGACACCAATAGAG 58.311 47.619 0.00 0.00 0.00 2.43
114 116 2.831685 ACAACTGCGACACCAATAGA 57.168 45.000 0.00 0.00 0.00 1.98
115 117 5.348986 ACTATACAACTGCGACACCAATAG 58.651 41.667 0.00 0.00 0.00 1.73
116 118 5.333299 ACTATACAACTGCGACACCAATA 57.667 39.130 0.00 0.00 0.00 1.90
117 119 4.202245 ACTATACAACTGCGACACCAAT 57.798 40.909 0.00 0.00 0.00 3.16
118 120 3.671008 ACTATACAACTGCGACACCAA 57.329 42.857 0.00 0.00 0.00 3.67
119 121 3.671008 AACTATACAACTGCGACACCA 57.329 42.857 0.00 0.00 0.00 4.17
120 122 5.808540 TCATAAACTATACAACTGCGACACC 59.191 40.000 0.00 0.00 0.00 4.16
121 123 6.880822 TCATAAACTATACAACTGCGACAC 57.119 37.500 0.00 0.00 0.00 3.67
122 124 7.317390 TCTTCATAAACTATACAACTGCGACA 58.683 34.615 0.00 0.00 0.00 4.35
123 125 7.751047 TCTTCATAAACTATACAACTGCGAC 57.249 36.000 0.00 0.00 0.00 5.19
124 126 8.817100 CATTCTTCATAAACTATACAACTGCGA 58.183 33.333 0.00 0.00 0.00 5.10
125 127 7.584123 GCATTCTTCATAAACTATACAACTGCG 59.416 37.037 0.00 0.00 0.00 5.18
126 128 8.616076 AGCATTCTTCATAAACTATACAACTGC 58.384 33.333 0.00 0.00 0.00 4.40
128 130 9.890629 TGAGCATTCTTCATAAACTATACAACT 57.109 29.630 0.00 0.00 0.00 3.16
151 153 6.154445 AGCAAAAGCACAACATAGAAATGAG 58.846 36.000 0.00 0.00 36.54 2.90
154 156 7.829725 TGATAGCAAAAGCACAACATAGAAAT 58.170 30.769 0.00 0.00 0.00 2.17
168 170 5.163824 TGTTCGAGCTTGATGATAGCAAAAG 60.164 40.000 3.98 3.16 41.11 2.27
177 179 2.610479 GGACAGTGTTCGAGCTTGATGA 60.610 50.000 3.98 0.00 0.00 2.92
228 233 5.793817 ACAAATTCCTTGGATTTACAAGCC 58.206 37.500 0.00 0.00 44.98 4.35
324 331 1.072505 TCCTTTTGGGACGCTGGAC 59.927 57.895 0.00 0.00 39.58 4.02
325 332 3.569849 TCCTTTTGGGACGCTGGA 58.430 55.556 0.00 0.00 39.58 3.86
340 347 6.926272 GGTGTCTAGATACATCAAGACAATCC 59.074 42.308 19.78 1.33 37.91 3.01
414 421 3.827722 ACCTTCGTCCCAAAAAGATTGA 58.172 40.909 0.00 0.00 0.00 2.57
425 432 5.105432 CCCTAGCTAATATTACCTTCGTCCC 60.105 48.000 0.00 0.00 0.00 4.46
476 484 8.430063 GCGTAATTAATAGCATACGTATTGTGT 58.570 33.333 5.03 0.00 42.19 3.72
479 487 6.618308 GCGCGTAATTAATAGCATACGTATTG 59.382 38.462 8.43 3.14 42.19 1.90
481 489 6.032094 AGCGCGTAATTAATAGCATACGTAT 58.968 36.000 8.43 1.14 42.19 3.06
484 492 4.817987 AGCGCGTAATTAATAGCATACG 57.182 40.909 8.43 11.37 42.85 3.06
502 510 4.151335 GGTGAGTGCTCATGATATTTAGCG 59.849 45.833 5.11 0.00 42.18 4.26
519 538 4.081420 ACTTAGATTGCTCGAATGGTGAGT 60.081 41.667 0.00 0.00 35.85 3.41
555 574 3.554259 TTAATCTCGTCCATCGGATCG 57.446 47.619 0.00 0.00 40.32 3.69
560 579 4.794248 TTGCAATTAATCTCGTCCATCG 57.206 40.909 0.00 0.00 41.41 3.84
579 598 7.812309 TGCTAGTTGCGCTAATACTATATTG 57.188 36.000 9.73 1.43 46.63 1.90
583 602 6.046593 TGTTTGCTAGTTGCGCTAATACTAT 58.953 36.000 9.73 0.00 46.63 2.12
584 603 5.412640 TGTTTGCTAGTTGCGCTAATACTA 58.587 37.500 9.73 10.11 46.63 1.82
609 628 5.007136 CCTTTTCTTTTTGCGGCAAACATTA 59.993 36.000 26.39 10.39 32.79 1.90
626 645 4.220602 GTCCCATTATTGTGTGCCTTTTCT 59.779 41.667 0.00 0.00 0.00 2.52
627 646 4.220602 AGTCCCATTATTGTGTGCCTTTTC 59.779 41.667 0.00 0.00 0.00 2.29
628 647 4.159557 AGTCCCATTATTGTGTGCCTTTT 58.840 39.130 0.00 0.00 0.00 2.27
632 651 3.356290 AGAAGTCCCATTATTGTGTGCC 58.644 45.455 0.00 0.00 0.00 5.01
636 655 7.880160 TTTGGATAGAAGTCCCATTATTGTG 57.120 36.000 0.00 0.00 37.48 3.33
661 680 5.489792 ACTATCATGCCGACTTTATCCAT 57.510 39.130 0.00 0.00 0.00 3.41
697 720 5.479375 TCTTTAGTAGGAACGGATCACTGTT 59.521 40.000 0.00 0.00 46.68 3.16
730 753 1.745087 GATGTGGATCAACGTGCCATT 59.255 47.619 0.00 0.00 33.66 3.16
732 755 0.324614 AGATGTGGATCAACGTGCCA 59.675 50.000 0.00 0.00 0.00 4.92
769 795 2.961669 GAAATGACCGTTGCGCCGT 61.962 57.895 4.18 0.00 0.00 5.68
1145 1190 3.701241 TGAAAAACCACGAAATCAGCAC 58.299 40.909 0.00 0.00 0.00 4.40
1146 1191 4.202101 ACATGAAAAACCACGAAATCAGCA 60.202 37.500 0.00 0.00 0.00 4.41
1147 1192 4.148696 CACATGAAAAACCACGAAATCAGC 59.851 41.667 0.00 0.00 0.00 4.26
1159 1204 5.291971 AGACCAATCAAGCACATGAAAAAC 58.708 37.500 0.00 0.00 32.06 2.43
1165 1210 2.422479 CCTGAGACCAATCAAGCACATG 59.578 50.000 0.00 0.00 0.00 3.21
1166 1213 2.306805 TCCTGAGACCAATCAAGCACAT 59.693 45.455 0.00 0.00 0.00 3.21
1168 1215 2.079925 GTCCTGAGACCAATCAAGCAC 58.920 52.381 0.00 0.00 37.00 4.40
1169 1216 1.980765 AGTCCTGAGACCAATCAAGCA 59.019 47.619 0.00 0.00 44.72 3.91
1397 1460 2.501128 CATCATGCCCCTCGTCGT 59.499 61.111 0.00 0.00 0.00 4.34
1409 1472 1.596203 CCGTCCGCATCAGCATCAT 60.596 57.895 0.00 0.00 42.27 2.45
1410 1473 2.202919 CCGTCCGCATCAGCATCA 60.203 61.111 0.00 0.00 42.27 3.07
1599 1662 3.426568 GAAGCAGCACCGTCCAGC 61.427 66.667 0.00 0.00 0.00 4.85
1600 1663 1.364626 GATGAAGCAGCACCGTCCAG 61.365 60.000 0.00 0.00 0.00 3.86
1601 1664 1.375908 GATGAAGCAGCACCGTCCA 60.376 57.895 0.00 0.00 0.00 4.02
1608 1671 3.582148 CGGCAAGATGAAGCAGCA 58.418 55.556 0.00 0.00 0.00 4.41
1716 1791 1.712081 CTGCTTCTCAACGGCATCG 59.288 57.895 0.00 0.00 43.02 3.84
1767 1842 4.647853 AGCATTGGACTGCACATTATGAAT 59.352 37.500 0.00 0.00 44.77 2.57
1797 1872 8.590204 TCACATGGTTTGAAATACTCAGTAGTA 58.410 33.333 0.00 0.00 42.35 1.82
1885 1960 2.783135 AACAGCGAAGACATTGGATGT 58.217 42.857 0.00 0.00 44.25 3.06
1897 1972 1.229428 CAGGCTTCTGAAACAGCGAA 58.771 50.000 0.00 0.00 40.86 4.70
1903 1978 3.569701 TGAATTCCACAGGCTTCTGAAAC 59.430 43.478 2.27 0.00 40.86 2.78
1917 1992 1.753903 TGGGGGAGAACTGAATTCCA 58.246 50.000 2.27 0.00 38.16 3.53
2108 2183 2.392662 TCTTGATCTCGAGGCAGGATT 58.607 47.619 13.56 0.00 0.00 3.01
2187 2262 8.772250 TGTTCACCTTAGGATGAATATCTTTCT 58.228 33.333 4.77 0.00 37.19 2.52
2215 2290 2.669569 TTGCTTGTCCGCCTCTGC 60.670 61.111 0.00 0.00 0.00 4.26
2239 2314 5.981088 TCACACCATGTATCAGCAAATTT 57.019 34.783 0.00 0.00 0.00 1.82
2251 2326 8.765488 TCCATATCATTAAATTCACACCATGT 57.235 30.769 0.00 0.00 0.00 3.21
2268 2343 5.424757 CCGGAACTGTTAAACTCCATATCA 58.575 41.667 0.00 0.00 0.00 2.15
2291 2366 7.121315 AGAGCAAACCAACTTATTTATGAGACC 59.879 37.037 0.00 0.00 0.00 3.85
2358 2433 4.265893 TGTTCAGGCTGTTGAGTTGTAAA 58.734 39.130 15.27 0.00 0.00 2.01
2360 2435 3.552132 TGTTCAGGCTGTTGAGTTGTA 57.448 42.857 15.27 0.00 0.00 2.41
2489 2592 9.360093 AGAAAGAATAAGACAGACATTAGAACG 57.640 33.333 0.00 0.00 0.00 3.95
2642 2748 2.046314 ACTGGTTTCCGGATGCGG 60.046 61.111 21.08 21.08 33.36 5.69
2658 2764 8.889717 TGCTTACCATATTTTCTTTAGCTACAC 58.110 33.333 0.00 0.00 0.00 2.90
2775 2898 6.597562 ACAAGATAATCATTACCGGCCTTTA 58.402 36.000 0.00 0.00 0.00 1.85
2776 2899 5.445964 ACAAGATAATCATTACCGGCCTTT 58.554 37.500 0.00 0.00 0.00 3.11
2789 2912 9.084164 TGCGAGTAAAGTTCTTACAAGATAATC 57.916 33.333 0.00 0.00 34.49 1.75
2835 2958 9.787532 GAAGCATATACTGATTAGAGAGTGATC 57.212 37.037 0.00 0.00 32.49 2.92
2971 3097 0.106918 ACCTGGCCTTGAAACGAACA 60.107 50.000 3.32 0.00 0.00 3.18
3078 3204 5.583495 AGCGTGAGACTAATAAGACATGAC 58.417 41.667 0.00 0.00 0.00 3.06
3088 3214 9.035607 CAACATTTTATCTAGCGTGAGACTAAT 57.964 33.333 0.00 0.00 0.00 1.73
3098 3224 9.559958 AGAAATCAAACAACATTTTATCTAGCG 57.440 29.630 0.00 0.00 0.00 4.26
3164 3335 3.627577 ACCAGTTGCTTGTCACAAACTAG 59.372 43.478 0.00 0.00 34.31 2.57
3241 3412 7.553044 GCTTTGGAGAAATTCTTAACTAGCCTA 59.447 37.037 0.00 0.00 0.00 3.93
3247 3418 6.976934 TTGGCTTTGGAGAAATTCTTAACT 57.023 33.333 0.00 0.00 0.00 2.24
3339 3511 5.354234 CACATTCTTATCCACCTACCACAAC 59.646 44.000 0.00 0.00 0.00 3.32
3361 3533 0.179067 TCCTTTGGACACGTGGACAC 60.179 55.000 21.57 7.28 0.00 3.67
3391 3563 7.039270 GGTAACCAATGGACCAAATTAACATC 58.961 38.462 6.16 0.00 33.16 3.06
3394 3566 6.394809 CAGGTAACCAATGGACCAAATTAAC 58.605 40.000 6.16 0.00 35.56 2.01
3397 3569 3.837731 CCAGGTAACCAATGGACCAAATT 59.162 43.478 6.16 0.00 36.09 1.82
3399 3571 2.178106 ACCAGGTAACCAATGGACCAAA 59.822 45.455 6.16 0.00 37.54 3.28
3403 3575 1.173913 GCACCAGGTAACCAATGGAC 58.826 55.000 6.16 0.00 37.54 4.02
3404 3576 1.072266 AGCACCAGGTAACCAATGGA 58.928 50.000 6.16 0.00 37.54 3.41
3405 3577 2.799126 TAGCACCAGGTAACCAATGG 57.201 50.000 0.00 0.00 40.10 3.16
3406 3578 5.659440 AAAATAGCACCAGGTAACCAATG 57.341 39.130 0.00 0.00 37.17 2.82
3407 3579 9.482175 TTTATAAAATAGCACCAGGTAACCAAT 57.518 29.630 0.00 0.00 37.17 3.16
3408 3580 8.880991 TTTATAAAATAGCACCAGGTAACCAA 57.119 30.769 0.00 0.00 37.17 3.67
3414 3586 9.367160 AGCAATATTTATAAAATAGCACCAGGT 57.633 29.630 1.21 0.00 0.00 4.00
3464 3762 5.245531 TGCCAGACTACCATTACAAAAGAG 58.754 41.667 0.00 0.00 0.00 2.85
3506 3806 3.635373 TGTAGGCTAGTTTGATACGGAGG 59.365 47.826 0.00 0.00 0.00 4.30
3507 3807 4.913335 TGTAGGCTAGTTTGATACGGAG 57.087 45.455 0.00 0.00 0.00 4.63
3508 3808 5.664294 TTTGTAGGCTAGTTTGATACGGA 57.336 39.130 0.00 0.00 0.00 4.69
3509 3809 6.730960 TTTTTGTAGGCTAGTTTGATACGG 57.269 37.500 0.00 0.00 0.00 4.02
3529 3829 8.953313 CCTCCGTACCAAAATATAAGACTTTTT 58.047 33.333 0.00 0.00 0.00 1.94
3530 3830 8.105197 ACCTCCGTACCAAAATATAAGACTTTT 58.895 33.333 0.00 0.00 0.00 2.27
3531 3831 7.627311 ACCTCCGTACCAAAATATAAGACTTT 58.373 34.615 0.00 0.00 0.00 2.66
3532 3832 7.191593 ACCTCCGTACCAAAATATAAGACTT 57.808 36.000 0.00 0.00 0.00 3.01
3533 3833 6.803366 ACCTCCGTACCAAAATATAAGACT 57.197 37.500 0.00 0.00 0.00 3.24
3617 3917 3.711704 CCAGTAGTAACATGGACCTGGAT 59.288 47.826 14.80 0.00 36.09 3.41
3678 4048 1.398041 CATGGTCATTAGCCACACGTG 59.602 52.381 15.48 15.48 39.03 4.49
3679 4049 1.003118 ACATGGTCATTAGCCACACGT 59.997 47.619 0.00 0.00 39.03 4.49
3680 4050 1.737838 ACATGGTCATTAGCCACACG 58.262 50.000 0.00 0.00 39.03 4.49
3681 4051 3.347216 AGAACATGGTCATTAGCCACAC 58.653 45.455 14.46 0.00 39.03 3.82
3682 4052 3.719268 AGAACATGGTCATTAGCCACA 57.281 42.857 14.46 0.00 39.03 4.17
3683 4053 5.391312 AAAAGAACATGGTCATTAGCCAC 57.609 39.130 14.46 0.00 39.03 5.01
3804 4174 7.040755 CCCGACTGTCATAAATAATAAATGCCA 60.041 37.037 8.73 0.00 0.00 4.92
3805 4175 7.040686 ACCCGACTGTCATAAATAATAAATGCC 60.041 37.037 8.73 0.00 0.00 4.40
3806 4176 7.871853 ACCCGACTGTCATAAATAATAAATGC 58.128 34.615 8.73 0.00 0.00 3.56
3813 4183 8.241497 ACACTATACCCGACTGTCATAAATAA 57.759 34.615 8.73 0.00 0.00 1.40
3828 4198 6.879458 ACTCTGTGAATTGAAACACTATACCC 59.121 38.462 0.00 0.00 37.81 3.69
3830 4200 8.988934 TGAACTCTGTGAATTGAAACACTATAC 58.011 33.333 0.00 0.00 37.81 1.47
3831 4201 9.554395 TTGAACTCTGTGAATTGAAACACTATA 57.446 29.630 0.00 0.00 37.81 1.31
3832 4202 8.450578 TTGAACTCTGTGAATTGAAACACTAT 57.549 30.769 0.00 0.00 37.81 2.12
3833 4203 7.552687 ACTTGAACTCTGTGAATTGAAACACTA 59.447 33.333 0.00 0.00 37.81 2.74
3976 4346 8.540388 TCTCATCTAGCAGTTGTTTATAAAGGT 58.460 33.333 0.00 0.00 0.00 3.50
3990 4360 3.862267 CCGTTGTTTCTCTCATCTAGCAG 59.138 47.826 0.00 0.00 0.00 4.24
3991 4361 3.849911 CCGTTGTTTCTCTCATCTAGCA 58.150 45.455 0.00 0.00 0.00 3.49
4032 4402 2.422597 TGCTAGGACAAACGGTGATTG 58.577 47.619 0.00 0.00 0.00 2.67
4048 4418 5.236478 GTCAACAGTCTTGCTAGTTTTGCTA 59.764 40.000 0.00 0.00 0.00 3.49
4050 4420 4.201910 TGTCAACAGTCTTGCTAGTTTTGC 60.202 41.667 0.00 0.00 0.00 3.68
4073 4443 1.033746 CACCATTGCGGCTCCATTCT 61.034 55.000 0.00 0.00 39.03 2.40
4104 4474 5.177511 TCATGTTAGCATCAATTACTAGCGC 59.822 40.000 0.00 0.00 31.99 5.92
4146 4516 9.254133 CATACTGTTGACTAGTAATGGAAGATG 57.746 37.037 0.00 0.00 34.59 2.90
4147 4517 9.201989 TCATACTGTTGACTAGTAATGGAAGAT 57.798 33.333 0.00 0.00 34.59 2.40
4197 4567 9.071276 AGAAACACAGATCACAACTTTGATAAT 57.929 29.630 0.00 0.00 36.30 1.28
4246 4616 0.834612 TTTTGGTGGGTCTCTCGTGT 59.165 50.000 0.00 0.00 0.00 4.49
4273 4643 4.614946 TCATTCAGTCTATGATCGCTGTG 58.385 43.478 0.00 0.00 37.89 3.66
4305 4675 1.740296 GGTCATTCCGTGTGGGTCG 60.740 63.158 0.00 0.00 37.00 4.79
4322 4692 1.380515 TCCTTCGAGGCTCCTCTGG 60.381 63.158 9.32 12.03 40.69 3.86
4518 4894 6.115446 TGCTAGTCATGATTACAAAAGGGAG 58.885 40.000 0.00 0.00 0.00 4.30
4592 4968 4.213482 GTCGAAAAATTGCCAGTAGACACT 59.787 41.667 0.00 0.00 34.42 3.55
4844 5222 6.128309 CCACATTTTGTTCACATCTCATCGTA 60.128 38.462 0.00 0.00 0.00 3.43
4845 5223 5.335113 CCACATTTTGTTCACATCTCATCGT 60.335 40.000 0.00 0.00 0.00 3.73
4866 5244 5.841957 AAATCTTGAATGGCTATGACCAC 57.158 39.130 0.00 0.00 44.17 4.16
5080 5490 2.168496 CGGAGGGAGTACTTCTCAACA 58.832 52.381 21.13 0.00 44.40 3.33
5092 5502 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
5094 5504 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
5095 5505 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
5096 5506 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
5097 5507 7.795482 TTTAAGACAAGAATTTTGAGACGGA 57.205 32.000 7.18 0.00 0.00 4.69
5098 5508 9.118236 GAATTTAAGACAAGAATTTTGAGACGG 57.882 33.333 7.18 0.00 0.00 4.79
5099 5509 8.831372 CGAATTTAAGACAAGAATTTTGAGACG 58.169 33.333 7.18 0.00 0.00 4.18
5100 5510 9.665264 ACGAATTTAAGACAAGAATTTTGAGAC 57.335 29.630 0.00 0.00 0.00 3.36
5101 5511 9.878599 GACGAATTTAAGACAAGAATTTTGAGA 57.121 29.630 0.00 0.00 0.00 3.27
5102 5512 8.831372 CGACGAATTTAAGACAAGAATTTTGAG 58.169 33.333 0.00 0.00 0.00 3.02
5103 5513 8.339714 ACGACGAATTTAAGACAAGAATTTTGA 58.660 29.630 0.00 0.00 0.00 2.69
5104 5514 8.488979 ACGACGAATTTAAGACAAGAATTTTG 57.511 30.769 0.00 0.00 0.00 2.44
5105 5515 8.557029 AGACGACGAATTTAAGACAAGAATTTT 58.443 29.630 0.00 0.00 0.00 1.82
5106 5516 8.009974 CAGACGACGAATTTAAGACAAGAATTT 58.990 33.333 0.00 0.00 0.00 1.82
5107 5517 7.360101 CCAGACGACGAATTTAAGACAAGAATT 60.360 37.037 0.00 0.00 0.00 2.17
5108 5518 6.090898 CCAGACGACGAATTTAAGACAAGAAT 59.909 38.462 0.00 0.00 0.00 2.40
5109 5519 5.404366 CCAGACGACGAATTTAAGACAAGAA 59.596 40.000 0.00 0.00 0.00 2.52
5110 5520 4.921515 CCAGACGACGAATTTAAGACAAGA 59.078 41.667 0.00 0.00 0.00 3.02
5111 5521 4.921515 TCCAGACGACGAATTTAAGACAAG 59.078 41.667 0.00 0.00 0.00 3.16
5112 5522 4.873817 TCCAGACGACGAATTTAAGACAA 58.126 39.130 0.00 0.00 0.00 3.18
5113 5523 4.508461 TCCAGACGACGAATTTAAGACA 57.492 40.909 0.00 0.00 0.00 3.41
5114 5524 5.170981 CGTATCCAGACGACGAATTTAAGAC 59.829 44.000 0.00 0.00 45.82 3.01
5115 5525 5.268544 CGTATCCAGACGACGAATTTAAGA 58.731 41.667 0.00 0.00 45.82 2.10
5116 5526 4.440103 CCGTATCCAGACGACGAATTTAAG 59.560 45.833 0.00 0.00 45.82 1.85
5117 5527 4.096231 TCCGTATCCAGACGACGAATTTAA 59.904 41.667 0.00 0.00 45.82 1.52
5118 5528 3.627123 TCCGTATCCAGACGACGAATTTA 59.373 43.478 0.00 0.00 45.82 1.40
5119 5529 2.424601 TCCGTATCCAGACGACGAATTT 59.575 45.455 0.00 0.00 45.82 1.82
5120 5530 2.019249 TCCGTATCCAGACGACGAATT 58.981 47.619 0.00 0.00 45.82 2.17
5121 5531 1.671979 TCCGTATCCAGACGACGAAT 58.328 50.000 0.00 0.00 45.82 3.34
5122 5532 1.332686 CATCCGTATCCAGACGACGAA 59.667 52.381 0.00 0.00 45.82 3.85
5123 5533 0.942252 CATCCGTATCCAGACGACGA 59.058 55.000 0.00 0.00 45.82 4.20
5124 5534 0.661552 ACATCCGTATCCAGACGACG 59.338 55.000 0.00 0.00 45.82 5.12
5125 5535 4.080969 GATACATCCGTATCCAGACGAC 57.919 50.000 0.00 0.00 45.67 4.34
5134 5544 9.277783 ACGTTTTAGTAGTAGATACATCCGTAT 57.722 33.333 0.00 0.00 41.16 3.06
5135 5545 8.551205 CACGTTTTAGTAGTAGATACATCCGTA 58.449 37.037 0.00 0.00 36.79 4.02
5136 5546 7.280876 TCACGTTTTAGTAGTAGATACATCCGT 59.719 37.037 0.00 0.00 36.79 4.69
5137 5547 7.585573 GTCACGTTTTAGTAGTAGATACATCCG 59.414 40.741 0.00 0.00 36.79 4.18
5138 5548 8.619546 AGTCACGTTTTAGTAGTAGATACATCC 58.380 37.037 0.00 0.00 36.79 3.51
5140 5550 9.784680 CAAGTCACGTTTTAGTAGTAGATACAT 57.215 33.333 0.00 0.00 36.79 2.29
5141 5551 9.002600 TCAAGTCACGTTTTAGTAGTAGATACA 57.997 33.333 0.00 0.00 36.79 2.29
5145 5555 9.002600 TGTATCAAGTCACGTTTTAGTAGTAGA 57.997 33.333 0.00 0.00 0.00 2.59
5146 5556 9.784680 ATGTATCAAGTCACGTTTTAGTAGTAG 57.215 33.333 0.00 0.00 0.00 2.57
5147 5557 9.778993 GATGTATCAAGTCACGTTTTAGTAGTA 57.221 33.333 0.00 0.00 0.00 1.82
5148 5558 8.301720 TGATGTATCAAGTCACGTTTTAGTAGT 58.698 33.333 0.00 0.00 33.08 2.73
5149 5559 8.683550 TGATGTATCAAGTCACGTTTTAGTAG 57.316 34.615 0.00 0.00 33.08 2.57
5151 5561 9.817809 ATATGATGTATCAAGTCACGTTTTAGT 57.182 29.630 0.00 0.00 40.69 2.24
5178 5588 3.754323 AGACACCGCGGAATTATCAAAAA 59.246 39.130 35.90 0.00 0.00 1.94
5179 5589 3.340034 AGACACCGCGGAATTATCAAAA 58.660 40.909 35.90 0.00 0.00 2.44
5180 5590 2.980568 AGACACCGCGGAATTATCAAA 58.019 42.857 35.90 0.00 0.00 2.69
5181 5591 2.684001 AGACACCGCGGAATTATCAA 57.316 45.000 35.90 0.00 0.00 2.57
5182 5592 4.055360 CAATAGACACCGCGGAATTATCA 58.945 43.478 35.90 10.66 0.00 2.15
5183 5593 3.432252 CCAATAGACACCGCGGAATTATC 59.568 47.826 35.90 19.97 0.00 1.75
5186 5596 1.208535 TCCAATAGACACCGCGGAATT 59.791 47.619 35.90 18.68 0.00 2.17
5193 5603 3.009723 ACAATTGCTCCAATAGACACCG 58.990 45.455 5.05 0.00 32.43 4.94
5265 5675 7.267857 TGGATATAATTGGTATCTCTGCGATG 58.732 38.462 10.61 0.00 33.48 3.84
5269 5679 5.819901 GGCTGGATATAATTGGTATCTCTGC 59.180 44.000 10.61 13.14 0.00 4.26
5323 5733 4.111577 TGAGGATACCATTGTCCCTCTTT 58.888 43.478 15.06 0.00 41.46 2.52
5324 5734 3.713764 CTGAGGATACCATTGTCCCTCTT 59.286 47.826 15.06 0.00 41.46 2.85
5325 5735 3.312890 CTGAGGATACCATTGTCCCTCT 58.687 50.000 15.06 0.00 41.46 3.69
5326 5736 2.224402 GCTGAGGATACCATTGTCCCTC 60.224 54.545 9.90 9.90 41.36 4.30
5327 5737 1.771255 GCTGAGGATACCATTGTCCCT 59.229 52.381 0.00 0.00 33.38 4.20
5328 5738 1.202818 GGCTGAGGATACCATTGTCCC 60.203 57.143 0.00 0.00 33.38 4.46
5329 5739 1.202818 GGGCTGAGGATACCATTGTCC 60.203 57.143 0.00 0.00 33.09 4.02
5330 5740 1.490490 TGGGCTGAGGATACCATTGTC 59.510 52.381 0.00 0.00 37.17 3.18
5331 5741 1.212935 GTGGGCTGAGGATACCATTGT 59.787 52.381 0.00 0.00 35.13 2.71
5332 5742 1.477558 GGTGGGCTGAGGATACCATTG 60.478 57.143 0.00 0.00 35.13 2.82
5333 5743 0.846693 GGTGGGCTGAGGATACCATT 59.153 55.000 0.00 0.00 35.13 3.16
5334 5744 0.327480 TGGTGGGCTGAGGATACCAT 60.327 55.000 0.00 0.00 36.56 3.55
5335 5745 0.982852 CTGGTGGGCTGAGGATACCA 60.983 60.000 0.00 0.00 38.98 3.25
5336 5746 1.700042 CCTGGTGGGCTGAGGATACC 61.700 65.000 0.00 0.00 37.17 2.73
5337 5747 0.691078 TCCTGGTGGGCTGAGGATAC 60.691 60.000 0.00 0.00 30.58 2.24
5338 5748 0.268869 ATCCTGGTGGGCTGAGGATA 59.731 55.000 0.00 0.00 43.52 2.59
5339 5749 0.625683 AATCCTGGTGGGCTGAGGAT 60.626 55.000 0.00 0.00 46.65 3.24
5340 5750 1.229951 AATCCTGGTGGGCTGAGGA 60.230 57.895 0.00 0.00 40.22 3.71
5341 5751 1.225704 GAATCCTGGTGGGCTGAGG 59.774 63.158 0.00 0.00 34.39 3.86
5342 5752 0.329261 TTGAATCCTGGTGGGCTGAG 59.671 55.000 0.00 0.00 34.39 3.35
5343 5753 0.329261 CTTGAATCCTGGTGGGCTGA 59.671 55.000 0.00 0.00 34.39 4.26
5344 5754 0.038744 ACTTGAATCCTGGTGGGCTG 59.961 55.000 0.00 0.00 34.39 4.85
5345 5755 0.329596 GACTTGAATCCTGGTGGGCT 59.670 55.000 0.00 0.00 34.39 5.19
5346 5756 0.681243 GGACTTGAATCCTGGTGGGC 60.681 60.000 0.00 0.00 35.68 5.36
5347 5757 3.577389 GGACTTGAATCCTGGTGGG 57.423 57.895 0.00 0.00 35.68 4.61
5354 5764 1.003580 TGAGCACCAGGACTTGAATCC 59.996 52.381 0.00 0.00 39.28 3.01
5355 5765 2.079925 GTGAGCACCAGGACTTGAATC 58.920 52.381 0.00 0.00 0.00 2.52
5356 5766 1.421268 TGTGAGCACCAGGACTTGAAT 59.579 47.619 0.00 0.00 0.00 2.57
5357 5767 0.836606 TGTGAGCACCAGGACTTGAA 59.163 50.000 0.00 0.00 0.00 2.69
5358 5768 0.106708 GTGTGAGCACCAGGACTTGA 59.893 55.000 0.00 0.00 39.61 3.02
5359 5769 2.621763 GTGTGAGCACCAGGACTTG 58.378 57.895 0.00 0.00 39.61 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.