Multiple sequence alignment - TraesCS2D01G086000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G086000 chr2D 100.000 3923 0 0 1 3923 37056857 37052935 0.000000e+00 7245.0
1 TraesCS2D01G086000 chr2D 93.694 2458 91 31 700 3126 37074764 37072340 0.000000e+00 3622.0
2 TraesCS2D01G086000 chr2D 92.583 1618 68 23 872 2460 37207948 37209542 0.000000e+00 2276.0
3 TraesCS2D01G086000 chr2D 93.713 684 33 4 2441 3120 37209600 37210277 0.000000e+00 1016.0
4 TraesCS2D01G086000 chr2D 87.847 288 33 2 410 695 130782486 130782773 1.750000e-88 337.0
5 TraesCS2D01G086000 chr2D 90.417 240 22 1 1 240 37118248 37118010 8.180000e-82 315.0
6 TraesCS2D01G086000 chr2D 86.111 288 39 1 409 695 565521146 565521433 3.810000e-80 309.0
7 TraesCS2D01G086000 chr2D 85.813 289 38 2 410 695 576451156 576451444 1.770000e-78 303.0
8 TraesCS2D01G086000 chr2D 86.923 130 3 5 267 395 37088106 37087990 2.460000e-27 134.0
9 TraesCS2D01G086000 chr2D 84.564 149 5 8 263 410 37074877 37074746 8.840000e-27 132.0
10 TraesCS2D01G086000 chr2D 85.321 109 6 5 700 801 37087989 37087884 1.930000e-18 104.0
11 TraesCS2D01G086000 chr2D 94.118 51 1 2 3053 3101 37227749 37227799 4.200000e-10 76.8
12 TraesCS2D01G086000 chr2B 94.020 2408 88 23 759 3147 64778832 64776462 0.000000e+00 3598.0
13 TraesCS2D01G086000 chr2B 92.193 1614 77 22 872 2460 64855974 64857563 0.000000e+00 2237.0
14 TraesCS2D01G086000 chr2B 89.058 658 64 4 1798 2448 770766834 770766178 0.000000e+00 809.0
15 TraesCS2D01G086000 chr2B 92.566 565 37 4 2441 3003 64857620 64858181 0.000000e+00 806.0
16 TraesCS2D01G086000 chr2B 86.289 671 89 2 1000 1667 770767515 770766845 0.000000e+00 726.0
17 TraesCS2D01G086000 chr2B 87.871 371 41 2 3485 3853 63808064 63808432 2.170000e-117 433.0
18 TraesCS2D01G086000 chr2B 87.366 372 40 5 3485 3853 64768188 64767821 1.690000e-113 420.0
19 TraesCS2D01G086000 chr2B 89.873 316 32 0 2439 2754 770766097 770765782 1.310000e-109 407.0
20 TraesCS2D01G086000 chr2B 86.552 290 35 3 409 695 769484482 769484194 2.280000e-82 316.0
21 TraesCS2D01G086000 chr2B 84.300 293 20 15 3125 3411 64339110 64338838 3.010000e-66 263.0
22 TraesCS2D01G086000 chr2B 89.933 149 12 2 3298 3443 64769128 64768980 5.170000e-44 189.0
23 TraesCS2D01G086000 chr2B 90.909 55 5 0 3125 3179 64861627 64861681 1.510000e-09 75.0
24 TraesCS2D01G086000 chr2A 91.828 1603 92 12 872 2448 41992445 41994034 0.000000e+00 2198.0
25 TraesCS2D01G086000 chr2A 94.742 951 26 9 1500 2450 41757100 41756174 0.000000e+00 1458.0
26 TraesCS2D01G086000 chr2A 96.186 708 27 0 2441 3148 41756100 41755393 0.000000e+00 1158.0
27 TraesCS2D01G086000 chr2A 92.788 721 28 6 788 1508 41760586 41759890 0.000000e+00 1022.0
28 TraesCS2D01G086000 chr2A 94.539 531 25 3 2441 2967 41994100 41994630 0.000000e+00 817.0
29 TraesCS2D01G086000 chr2A 85.693 671 93 2 1000 1667 758449707 758449037 0.000000e+00 704.0
30 TraesCS2D01G086000 chr2A 86.061 660 82 6 1798 2448 758469821 758469163 0.000000e+00 701.0
31 TraesCS2D01G086000 chr2A 95.037 403 20 0 2523 2925 41745320 41744918 5.530000e-178 634.0
32 TraesCS2D01G086000 chr2A 91.071 280 22 2 1 278 41761369 41761091 3.700000e-100 375.0
33 TraesCS2D01G086000 chr2A 92.086 139 9 1 2750 2888 41745877 41745741 1.110000e-45 195.0
34 TraesCS2D01G086000 chr2A 85.496 131 14 3 282 409 41760984 41760856 8.840000e-27 132.0
35 TraesCS2D01G086000 chrUn 90.145 964 87 5 1798 2754 17299182 17298220 0.000000e+00 1247.0
36 TraesCS2D01G086000 chrUn 86.136 678 88 5 1000 1671 17299866 17299189 0.000000e+00 726.0
37 TraesCS2D01G086000 chr6D 86.411 287 37 2 410 695 18495298 18495583 2.940000e-81 313.0
38 TraesCS2D01G086000 chr6D 90.164 122 12 0 19 140 465105285 465105164 4.060000e-35 159.0
39 TraesCS2D01G086000 chr3D 86.014 286 38 2 410 694 474218989 474219273 4.920000e-79 305.0
40 TraesCS2D01G086000 chr1D 85.965 285 40 0 410 694 16675195 16675479 4.920000e-79 305.0
41 TraesCS2D01G086000 chr1D 85.616 292 39 3 406 695 348987139 348986849 1.770000e-78 303.0
42 TraesCS2D01G086000 chr7D 85.567 291 38 4 408 695 595688192 595687903 6.370000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G086000 chr2D 37052935 37056857 3922 True 7245.000000 7245 100.000000 1 3923 1 chr2D.!!$R1 3922
1 TraesCS2D01G086000 chr2D 37072340 37074877 2537 True 1877.000000 3622 89.129000 263 3126 2 chr2D.!!$R3 2863
2 TraesCS2D01G086000 chr2D 37207948 37210277 2329 False 1646.000000 2276 93.148000 872 3120 2 chr2D.!!$F5 2248
3 TraesCS2D01G086000 chr2B 64776462 64778832 2370 True 3598.000000 3598 94.020000 759 3147 1 chr2B.!!$R2 2388
4 TraesCS2D01G086000 chr2B 64855974 64861681 5707 False 1039.333333 2237 91.889333 872 3179 3 chr2B.!!$F2 2307
5 TraesCS2D01G086000 chr2B 770765782 770767515 1733 True 647.333333 809 88.406667 1000 2754 3 chr2B.!!$R5 1754
6 TraesCS2D01G086000 chr2B 64767821 64769128 1307 True 304.500000 420 88.649500 3298 3853 2 chr2B.!!$R4 555
7 TraesCS2D01G086000 chr2A 41992445 41994630 2185 False 1507.500000 2198 93.183500 872 2967 2 chr2A.!!$F1 2095
8 TraesCS2D01G086000 chr2A 41755393 41761369 5976 True 829.000000 1458 92.056600 1 3148 5 chr2A.!!$R4 3147
9 TraesCS2D01G086000 chr2A 758449037 758449707 670 True 704.000000 704 85.693000 1000 1667 1 chr2A.!!$R1 667
10 TraesCS2D01G086000 chr2A 758469163 758469821 658 True 701.000000 701 86.061000 1798 2448 1 chr2A.!!$R2 650
11 TraesCS2D01G086000 chr2A 41744918 41745877 959 True 414.500000 634 93.561500 2523 2925 2 chr2A.!!$R3 402
12 TraesCS2D01G086000 chrUn 17298220 17299866 1646 True 986.500000 1247 88.140500 1000 2754 2 chrUn.!!$R1 1754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 451 0.030235 TTGACACGTCACTCTGTCCG 59.970 55.0 0.00 0.0 39.66 4.79 F
559 667 0.110238 TACGAAGTCACCGTACGTGC 60.110 55.0 15.21 0.0 43.93 5.34 F
2284 5260 0.179073 CTACAAGCGGATCTGGGTGG 60.179 60.0 3.14 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 4753 1.029681 TTGCTCATCCTGCATGCATC 58.970 50.000 22.97 5.29 40.34 3.91 R
2394 5370 1.300697 GTTGAACCACGAGTCGCCT 60.301 57.895 13.59 0.00 0.00 5.52 R
3902 11096 0.179129 CAAAGGCCACCGCAATGATC 60.179 55.000 5.01 0.00 36.38 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 2.751436 CCCATCACCACCTTGCCG 60.751 66.667 0.00 0.00 0.00 5.69
164 165 0.108992 TCCGTCGTGTAACCTCATGC 60.109 55.000 0.00 0.00 0.00 4.06
169 170 2.806244 GTCGTGTAACCTCATGCTTTGT 59.194 45.455 0.00 0.00 0.00 2.83
179 180 3.367395 CCTCATGCTTTGTGAGTAGTCGA 60.367 47.826 2.86 0.00 41.13 4.20
236 237 9.575783 TTTGTGGTCAAAGTTTATAACAGTTTC 57.424 29.630 0.00 0.00 38.44 2.78
238 239 7.066043 TGTGGTCAAAGTTTATAACAGTTTCGT 59.934 33.333 0.00 0.00 0.00 3.85
239 240 7.375017 GTGGTCAAAGTTTATAACAGTTTCGTG 59.625 37.037 0.00 0.00 0.00 4.35
260 261 7.690228 TCGTGTGGTGTTTCATAAATTATAGC 58.310 34.615 0.00 0.00 0.00 2.97
261 262 7.551262 TCGTGTGGTGTTTCATAAATTATAGCT 59.449 33.333 0.00 0.00 0.00 3.32
262 263 7.639850 CGTGTGGTGTTTCATAAATTATAGCTG 59.360 37.037 0.00 0.00 0.00 4.24
328 434 1.026718 GGCGAGTGATGGGGTCTTTG 61.027 60.000 0.00 0.00 0.00 2.77
344 450 2.128035 CTTTGACACGTCACTCTGTCC 58.872 52.381 0.00 0.00 39.66 4.02
345 451 0.030235 TTGACACGTCACTCTGTCCG 59.970 55.000 0.00 0.00 39.66 4.79
354 460 1.536662 ACTCTGTCCGGCTTTCCCT 60.537 57.895 0.00 0.00 0.00 4.20
388 494 4.080526 TGGCCAGTAGGATCCTTAAGTTTC 60.081 45.833 22.03 5.68 36.89 2.78
389 495 4.452825 GCCAGTAGGATCCTTAAGTTTCC 58.547 47.826 22.03 11.30 36.89 3.13
395 503 8.731605 CAGTAGGATCCTTAAGTTTCCTTTTTC 58.268 37.037 22.03 13.34 39.33 2.29
434 542 6.706055 TTTTTGAACACAATACAAACGCAA 57.294 29.167 0.00 0.00 34.09 4.85
436 544 3.367607 TGAACACAATACAAACGCAAGC 58.632 40.909 0.00 0.00 45.62 4.01
437 545 2.031037 ACACAATACAAACGCAAGCG 57.969 45.000 13.50 13.50 46.03 4.68
438 546 0.702383 CACAATACAAACGCAAGCGC 59.298 50.000 15.09 0.00 44.19 5.92
440 548 1.250476 CAATACAAACGCAAGCGCTC 58.750 50.000 12.06 0.00 44.19 5.03
443 551 1.715993 TACAAACGCAAGCGCTCATA 58.284 45.000 12.06 0.00 44.19 2.15
444 552 1.086696 ACAAACGCAAGCGCTCATAT 58.913 45.000 12.06 0.00 44.19 1.78
445 553 2.276201 ACAAACGCAAGCGCTCATATA 58.724 42.857 12.06 0.00 44.19 0.86
447 555 4.055360 ACAAACGCAAGCGCTCATATATA 58.945 39.130 12.06 0.00 44.19 0.86
448 556 4.084537 ACAAACGCAAGCGCTCATATATAC 60.085 41.667 12.06 0.00 44.19 1.47
451 559 3.614176 ACGCAAGCGCTCATATATACATG 59.386 43.478 12.06 1.45 44.19 3.21
452 560 3.542875 CGCAAGCGCTCATATATACATGC 60.543 47.826 12.06 12.12 35.30 4.06
453 561 3.371898 GCAAGCGCTCATATATACATGCA 59.628 43.478 12.06 0.00 34.30 3.96
454 562 4.034858 GCAAGCGCTCATATATACATGCAT 59.965 41.667 12.06 0.00 34.30 3.96
455 563 5.234972 GCAAGCGCTCATATATACATGCATA 59.765 40.000 12.06 0.00 34.30 3.14
456 564 6.643845 CAAGCGCTCATATATACATGCATAC 58.356 40.000 12.06 0.00 0.00 2.39
457 565 5.906073 AGCGCTCATATATACATGCATACA 58.094 37.500 2.64 0.00 0.00 2.29
458 566 5.750547 AGCGCTCATATATACATGCATACAC 59.249 40.000 2.64 0.00 0.00 2.90
460 568 6.074623 GCGCTCATATATACATGCATACACTC 60.075 42.308 0.00 0.00 0.00 3.51
461 569 6.974622 CGCTCATATATACATGCATACACTCA 59.025 38.462 0.00 0.00 0.00 3.41
462 570 7.043788 CGCTCATATATACATGCATACACTCAC 60.044 40.741 0.00 0.00 0.00 3.51
464 572 8.366359 TCATATATACATGCATACACTCACCT 57.634 34.615 0.00 0.00 0.00 4.00
465 573 8.470002 TCATATATACATGCATACACTCACCTC 58.530 37.037 0.00 0.00 0.00 3.85
466 574 6.924913 ATATACATGCATACACTCACCTCT 57.075 37.500 0.00 0.00 0.00 3.69
467 575 9.700831 ATATATACATGCATACACTCACCTCTA 57.299 33.333 0.00 0.00 0.00 2.43
468 576 6.731292 ATACATGCATACACTCACCTCTAA 57.269 37.500 0.00 0.00 0.00 2.10
469 577 5.016051 ACATGCATACACTCACCTCTAAG 57.984 43.478 0.00 0.00 0.00 2.18
470 578 4.711846 ACATGCATACACTCACCTCTAAGA 59.288 41.667 0.00 0.00 0.00 2.10
471 579 5.187772 ACATGCATACACTCACCTCTAAGAA 59.812 40.000 0.00 0.00 0.00 2.52
472 580 5.073311 TGCATACACTCACCTCTAAGAAC 57.927 43.478 0.00 0.00 0.00 3.01
474 582 4.865365 GCATACACTCACCTCTAAGAACAC 59.135 45.833 0.00 0.00 0.00 3.32
476 584 6.634805 CATACACTCACCTCTAAGAACACAT 58.365 40.000 0.00 0.00 0.00 3.21
478 586 6.026947 ACACTCACCTCTAAGAACACATAC 57.973 41.667 0.00 0.00 0.00 2.39
480 588 6.211584 ACACTCACCTCTAAGAACACATACAT 59.788 38.462 0.00 0.00 0.00 2.29
481 589 6.533012 CACTCACCTCTAAGAACACATACATG 59.467 42.308 0.00 0.00 0.00 3.21
482 590 5.419542 TCACCTCTAAGAACACATACATGC 58.580 41.667 0.00 0.00 0.00 4.06
483 591 5.046663 TCACCTCTAAGAACACATACATGCA 60.047 40.000 0.00 0.00 0.00 3.96
486 594 5.063944 CCTCTAAGAACACATACATGCACAC 59.936 44.000 0.00 0.00 0.00 3.82
488 596 2.436417 AGAACACATACATGCACACCC 58.564 47.619 0.00 0.00 0.00 4.61
490 598 3.263170 AGAACACATACATGCACACCCTA 59.737 43.478 0.00 0.00 0.00 3.53
492 600 3.808728 ACACATACATGCACACCCTATC 58.191 45.455 0.00 0.00 0.00 2.08
494 602 2.106511 ACATACATGCACACCCTATCCC 59.893 50.000 0.00 0.00 0.00 3.85
495 603 2.190398 TACATGCACACCCTATCCCT 57.810 50.000 0.00 0.00 0.00 4.20
497 605 2.706350 ACATGCACACCCTATCCCTAT 58.294 47.619 0.00 0.00 0.00 2.57
498 606 2.373169 ACATGCACACCCTATCCCTATG 59.627 50.000 0.00 0.00 0.00 2.23
500 608 2.329267 TGCACACCCTATCCCTATGAG 58.671 52.381 0.00 0.00 0.00 2.90
501 609 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
502 610 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
504 612 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
505 613 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
507 615 2.569404 CCCTATCCCTATGAGCACCTTC 59.431 54.545 0.00 0.00 0.00 3.46
508 616 2.232452 CCTATCCCTATGAGCACCTTCG 59.768 54.545 0.00 0.00 0.00 3.79
509 617 2.088104 ATCCCTATGAGCACCTTCGA 57.912 50.000 0.00 0.00 0.00 3.71
510 618 1.403814 TCCCTATGAGCACCTTCGAG 58.596 55.000 0.00 0.00 0.00 4.04
511 619 1.063942 TCCCTATGAGCACCTTCGAGA 60.064 52.381 0.00 0.00 0.00 4.04
512 620 1.339610 CCCTATGAGCACCTTCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
513 621 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
514 622 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
515 623 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
516 624 1.621992 TGAGCACCTTCGAGAGACTT 58.378 50.000 0.00 0.00 41.84 3.01
518 626 2.750166 TGAGCACCTTCGAGAGACTTAG 59.250 50.000 0.00 0.00 41.84 2.18
519 627 1.474879 AGCACCTTCGAGAGACTTAGC 59.525 52.381 0.00 0.00 41.84 3.09
520 628 1.470112 GCACCTTCGAGAGACTTAGCC 60.470 57.143 0.00 0.00 41.84 3.93
521 629 1.096416 ACCTTCGAGAGACTTAGCCG 58.904 55.000 0.00 0.00 41.84 5.52
522 630 0.382515 CCTTCGAGAGACTTAGCCGG 59.617 60.000 0.00 0.00 41.84 6.13
523 631 0.248702 CTTCGAGAGACTTAGCCGGC 60.249 60.000 21.89 21.89 41.84 6.13
524 632 0.963856 TTCGAGAGACTTAGCCGGCA 60.964 55.000 31.54 12.31 41.84 5.69
526 634 0.952280 CGAGAGACTTAGCCGGCATA 59.048 55.000 31.54 15.15 0.00 3.14
527 635 1.542030 CGAGAGACTTAGCCGGCATAT 59.458 52.381 31.54 11.17 0.00 1.78
528 636 2.414824 CGAGAGACTTAGCCGGCATATC 60.415 54.545 31.54 19.70 0.00 1.63
529 637 2.558795 GAGAGACTTAGCCGGCATATCA 59.441 50.000 31.54 6.01 0.00 2.15
530 638 3.169099 AGAGACTTAGCCGGCATATCAT 58.831 45.455 31.54 9.39 0.00 2.45
531 639 3.194542 AGAGACTTAGCCGGCATATCATC 59.805 47.826 31.54 18.93 0.00 2.92
532 640 3.169099 AGACTTAGCCGGCATATCATCT 58.831 45.455 31.54 19.47 0.00 2.90
533 641 3.580458 AGACTTAGCCGGCATATCATCTT 59.420 43.478 31.54 6.76 0.00 2.40
535 643 5.246203 AGACTTAGCCGGCATATCATCTTAA 59.754 40.000 31.54 13.73 0.00 1.85
536 644 5.482908 ACTTAGCCGGCATATCATCTTAAG 58.517 41.667 31.54 23.90 0.00 1.85
537 645 5.246203 ACTTAGCCGGCATATCATCTTAAGA 59.754 40.000 31.54 7.82 0.00 2.10
538 646 4.833478 AGCCGGCATATCATCTTAAGAT 57.167 40.909 31.54 12.37 34.56 2.40
539 647 5.171339 AGCCGGCATATCATCTTAAGATT 57.829 39.130 31.54 5.12 31.21 2.40
540 648 5.564550 AGCCGGCATATCATCTTAAGATTT 58.435 37.500 31.54 8.78 31.21 2.17
542 650 6.595716 AGCCGGCATATCATCTTAAGATTTAC 59.404 38.462 31.54 2.79 31.21 2.01
543 651 6.455646 GCCGGCATATCATCTTAAGATTTACG 60.456 42.308 24.80 12.15 31.21 3.18
545 653 7.330946 CCGGCATATCATCTTAAGATTTACGAA 59.669 37.037 15.49 0.00 31.21 3.85
546 654 8.376203 CGGCATATCATCTTAAGATTTACGAAG 58.624 37.037 15.49 3.04 31.21 3.79
547 655 9.209175 GGCATATCATCTTAAGATTTACGAAGT 57.791 33.333 15.49 0.00 37.29 3.01
551 659 8.649973 ATCATCTTAAGATTTACGAAGTCACC 57.350 34.615 15.49 0.00 35.39 4.02
552 660 6.750501 TCATCTTAAGATTTACGAAGTCACCG 59.249 38.462 15.49 0.00 35.39 4.94
553 661 6.017400 TCTTAAGATTTACGAAGTCACCGT 57.983 37.500 0.00 0.00 43.93 4.83
554 662 7.144722 TCTTAAGATTTACGAAGTCACCGTA 57.855 36.000 0.00 0.00 43.93 4.02
555 663 7.023575 TCTTAAGATTTACGAAGTCACCGTAC 58.976 38.462 0.00 0.00 43.93 3.67
556 664 3.751621 AGATTTACGAAGTCACCGTACG 58.248 45.455 8.69 8.69 43.93 3.67
559 667 0.110238 TACGAAGTCACCGTACGTGC 60.110 55.000 15.21 0.00 43.93 5.34
560 668 2.084681 CGAAGTCACCGTACGTGCC 61.085 63.158 15.21 2.75 42.69 5.01
561 669 1.288127 GAAGTCACCGTACGTGCCT 59.712 57.895 15.21 5.12 42.69 4.75
562 670 0.731855 GAAGTCACCGTACGTGCCTC 60.732 60.000 15.21 6.30 42.69 4.70
563 671 2.467946 AAGTCACCGTACGTGCCTCG 62.468 60.000 15.21 0.00 42.69 4.63
573 681 2.579787 GTGCCTCGTCGTCGATGG 60.580 66.667 14.28 10.13 45.21 3.51
574 682 2.748647 TGCCTCGTCGTCGATGGA 60.749 61.111 14.28 10.18 45.21 3.41
575 683 2.337246 TGCCTCGTCGTCGATGGAA 61.337 57.895 14.28 9.78 45.21 3.53
576 684 1.153901 GCCTCGTCGTCGATGGAAA 60.154 57.895 14.28 0.00 45.21 3.13
578 686 1.132199 CCTCGTCGTCGATGGAAACG 61.132 60.000 14.28 10.22 45.21 3.60
579 687 0.453950 CTCGTCGTCGATGGAAACGT 60.454 55.000 14.28 0.00 45.21 3.99
580 688 0.453282 TCGTCGTCGATGGAAACGTC 60.453 55.000 14.28 0.00 41.35 4.34
581 689 0.453950 CGTCGTCGATGGAAACGTCT 60.454 55.000 6.56 0.00 44.51 4.18
583 691 2.172365 GTCGTCGATGGAAACGTCTAC 58.828 52.381 4.48 0.00 44.51 2.59
585 693 2.094894 TCGTCGATGGAAACGTCTACTC 59.905 50.000 4.48 0.00 44.51 2.59
586 694 2.790468 CGTCGATGGAAACGTCTACTCC 60.790 54.545 0.00 0.00 44.51 3.85
587 695 1.747355 TCGATGGAAACGTCTACTCCC 59.253 52.381 0.00 0.00 44.51 4.30
588 696 1.475280 CGATGGAAACGTCTACTCCCA 59.525 52.381 0.00 0.00 44.51 4.37
589 697 2.734492 CGATGGAAACGTCTACTCCCAC 60.734 54.545 0.00 0.00 44.51 4.61
590 698 2.005370 TGGAAACGTCTACTCCCACT 57.995 50.000 0.00 0.00 0.00 4.00
591 699 1.616865 TGGAAACGTCTACTCCCACTG 59.383 52.381 0.00 0.00 0.00 3.66
594 702 3.243975 GGAAACGTCTACTCCCACTGAAA 60.244 47.826 0.00 0.00 0.00 2.69
595 703 3.662247 AACGTCTACTCCCACTGAAAG 57.338 47.619 0.00 0.00 42.29 2.62
596 704 1.272769 ACGTCTACTCCCACTGAAAGC 59.727 52.381 0.00 0.00 37.60 3.51
597 705 1.732732 CGTCTACTCCCACTGAAAGCG 60.733 57.143 0.00 0.00 37.60 4.68
598 706 1.272769 GTCTACTCCCACTGAAAGCGT 59.727 52.381 0.00 0.00 37.60 5.07
599 707 2.490903 GTCTACTCCCACTGAAAGCGTA 59.509 50.000 0.00 0.00 37.60 4.42
600 708 3.130693 GTCTACTCCCACTGAAAGCGTAT 59.869 47.826 0.00 0.00 37.60 3.06
601 709 2.674796 ACTCCCACTGAAAGCGTATC 57.325 50.000 0.00 0.00 37.60 2.24
602 710 1.135083 ACTCCCACTGAAAGCGTATCG 60.135 52.381 0.00 0.00 37.60 2.92
618 726 5.338614 CGTATCGCCGAAAATCCTAAAAT 57.661 39.130 0.00 0.00 0.00 1.82
620 728 6.879962 CGTATCGCCGAAAATCCTAAAATAA 58.120 36.000 0.00 0.00 0.00 1.40
621 729 7.346695 CGTATCGCCGAAAATCCTAAAATAAA 58.653 34.615 0.00 0.00 0.00 1.40
623 731 9.113876 GTATCGCCGAAAATCCTAAAATAAATG 57.886 33.333 0.00 0.00 0.00 2.32
625 733 7.763356 TCGCCGAAAATCCTAAAATAAATGAA 58.237 30.769 0.00 0.00 0.00 2.57
626 734 7.913297 TCGCCGAAAATCCTAAAATAAATGAAG 59.087 33.333 0.00 0.00 0.00 3.02
627 735 7.913297 CGCCGAAAATCCTAAAATAAATGAAGA 59.087 33.333 0.00 0.00 0.00 2.87
628 736 9.581099 GCCGAAAATCCTAAAATAAATGAAGAA 57.419 29.630 0.00 0.00 0.00 2.52
640 748 9.754382 AAAATAAATGAAGAAATATGCGAGCAT 57.246 25.926 15.28 15.28 40.19 3.79
642 750 6.381481 AAATGAAGAAATATGCGAGCATCA 57.619 33.333 14.35 5.83 37.82 3.07
643 751 5.608676 ATGAAGAAATATGCGAGCATCAG 57.391 39.130 14.35 0.00 37.82 2.90
644 752 4.445453 TGAAGAAATATGCGAGCATCAGT 58.555 39.130 14.35 0.59 37.82 3.41
645 753 5.600696 TGAAGAAATATGCGAGCATCAGTA 58.399 37.500 14.35 0.00 37.82 2.74
646 754 5.463392 TGAAGAAATATGCGAGCATCAGTAC 59.537 40.000 14.35 4.36 37.82 2.73
647 755 5.207110 AGAAATATGCGAGCATCAGTACT 57.793 39.130 14.35 6.40 37.82 2.73
648 756 5.605534 AGAAATATGCGAGCATCAGTACTT 58.394 37.500 14.35 0.00 37.82 2.24
649 757 5.464722 AGAAATATGCGAGCATCAGTACTTG 59.535 40.000 14.35 0.00 37.82 3.16
650 758 2.967599 ATGCGAGCATCAGTACTTGA 57.032 45.000 4.52 0.00 40.85 3.02
651 759 2.741759 TGCGAGCATCAGTACTTGAA 57.258 45.000 0.00 0.00 39.77 2.69
652 760 3.251479 TGCGAGCATCAGTACTTGAAT 57.749 42.857 0.00 0.00 39.77 2.57
653 761 3.190079 TGCGAGCATCAGTACTTGAATC 58.810 45.455 0.00 0.00 39.77 2.52
654 762 2.541762 GCGAGCATCAGTACTTGAATCC 59.458 50.000 0.00 0.00 39.77 3.01
655 763 3.739519 GCGAGCATCAGTACTTGAATCCT 60.740 47.826 0.00 0.00 39.77 3.24
656 764 4.499865 GCGAGCATCAGTACTTGAATCCTA 60.500 45.833 0.00 0.00 39.77 2.94
657 765 5.777802 CGAGCATCAGTACTTGAATCCTAT 58.222 41.667 0.00 0.00 39.77 2.57
658 766 6.219473 CGAGCATCAGTACTTGAATCCTATT 58.781 40.000 0.00 0.00 39.77 1.73
659 767 6.145209 CGAGCATCAGTACTTGAATCCTATTG 59.855 42.308 0.00 0.00 39.77 1.90
660 768 6.294473 AGCATCAGTACTTGAATCCTATTGG 58.706 40.000 0.00 0.00 39.77 3.16
661 769 6.058183 GCATCAGTACTTGAATCCTATTGGT 58.942 40.000 0.00 0.00 39.77 3.67
662 770 6.203723 GCATCAGTACTTGAATCCTATTGGTC 59.796 42.308 0.00 0.00 39.77 4.02
663 771 7.504403 CATCAGTACTTGAATCCTATTGGTCT 58.496 38.462 0.00 0.00 39.77 3.85
664 772 6.878317 TCAGTACTTGAATCCTATTGGTCTG 58.122 40.000 0.00 0.00 31.34 3.51
665 773 6.667848 TCAGTACTTGAATCCTATTGGTCTGA 59.332 38.462 0.00 0.00 31.34 3.27
666 774 6.983307 CAGTACTTGAATCCTATTGGTCTGAG 59.017 42.308 0.00 0.00 34.23 3.35
667 775 5.365021 ACTTGAATCCTATTGGTCTGAGG 57.635 43.478 0.00 0.00 34.23 3.86
668 776 5.032846 ACTTGAATCCTATTGGTCTGAGGA 58.967 41.667 0.00 0.00 43.46 3.71
673 781 4.552883 TCCTATTGGTCTGAGGATACCA 57.447 45.455 0.00 0.00 43.99 3.25
674 782 4.223953 TCCTATTGGTCTGAGGATACCAC 58.776 47.826 0.00 0.00 45.31 4.16
675 783 4.078571 TCCTATTGGTCTGAGGATACCACT 60.079 45.833 0.00 0.00 45.31 4.00
676 784 4.039730 CCTATTGGTCTGAGGATACCACTG 59.960 50.000 0.00 0.00 45.31 3.66
677 785 2.623418 TGGTCTGAGGATACCACTGT 57.377 50.000 0.00 0.00 40.84 3.55
678 786 2.457598 TGGTCTGAGGATACCACTGTC 58.542 52.381 0.00 0.00 40.84 3.51
679 787 1.757699 GGTCTGAGGATACCACTGTCC 59.242 57.143 0.00 0.00 35.73 4.02
680 788 1.757699 GTCTGAGGATACCACTGTCCC 59.242 57.143 0.00 0.00 35.00 4.46
681 789 1.646447 TCTGAGGATACCACTGTCCCT 59.354 52.381 0.00 0.00 35.00 4.20
682 790 2.035632 CTGAGGATACCACTGTCCCTC 58.964 57.143 0.00 0.00 41.36 4.30
683 791 1.646447 TGAGGATACCACTGTCCCTCT 59.354 52.381 0.00 0.00 41.46 3.69
684 792 2.856864 TGAGGATACCACTGTCCCTCTA 59.143 50.000 0.00 0.00 41.46 2.43
685 793 3.271225 TGAGGATACCACTGTCCCTCTAA 59.729 47.826 0.00 0.00 41.46 2.10
686 794 3.637694 GAGGATACCACTGTCCCTCTAAC 59.362 52.174 0.00 0.00 39.50 2.34
687 795 2.699321 GGATACCACTGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
688 796 3.371965 GATACCACTGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
689 797 2.344093 ACCACTGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
690 798 3.484953 ACCACTGTCCCTCTAACCATA 57.515 47.619 0.00 0.00 0.00 2.74
691 799 3.105283 ACCACTGTCCCTCTAACCATAC 58.895 50.000 0.00 0.00 0.00 2.39
692 800 3.104512 CCACTGTCCCTCTAACCATACA 58.895 50.000 0.00 0.00 0.00 2.29
693 801 3.517901 CCACTGTCCCTCTAACCATACAA 59.482 47.826 0.00 0.00 0.00 2.41
694 802 4.504858 CACTGTCCCTCTAACCATACAAC 58.495 47.826 0.00 0.00 0.00 3.32
695 803 4.223032 CACTGTCCCTCTAACCATACAACT 59.777 45.833 0.00 0.00 0.00 3.16
696 804 4.844655 ACTGTCCCTCTAACCATACAACTT 59.155 41.667 0.00 0.00 0.00 2.66
697 805 5.046520 ACTGTCCCTCTAACCATACAACTTC 60.047 44.000 0.00 0.00 0.00 3.01
698 806 4.081862 TGTCCCTCTAACCATACAACTTCG 60.082 45.833 0.00 0.00 0.00 3.79
699 807 4.081807 GTCCCTCTAACCATACAACTTCGT 60.082 45.833 0.00 0.00 0.00 3.85
700 808 4.529377 TCCCTCTAACCATACAACTTCGTT 59.471 41.667 0.00 0.00 0.00 3.85
701 809 5.012354 TCCCTCTAACCATACAACTTCGTTT 59.988 40.000 0.00 0.00 0.00 3.60
702 810 5.704053 CCCTCTAACCATACAACTTCGTTTT 59.296 40.000 0.00 0.00 0.00 2.43
703 811 6.206048 CCCTCTAACCATACAACTTCGTTTTT 59.794 38.462 0.00 0.00 0.00 1.94
730 838 3.089573 ACTAAGTATAACCTTCGCCGC 57.910 47.619 0.00 0.00 0.00 6.53
731 839 2.223900 ACTAAGTATAACCTTCGCCGCC 60.224 50.000 0.00 0.00 0.00 6.13
732 840 0.529119 AAGTATAACCTTCGCCGCCG 60.529 55.000 0.00 0.00 0.00 6.46
776 884 9.471702 TGCCTTTTAGTACTCTGTATTAGTAGT 57.528 33.333 0.00 0.00 37.04 2.73
857 981 1.255882 TTCCGGTACCGACTAGCAAA 58.744 50.000 35.41 13.70 42.83 3.68
858 982 0.813184 TCCGGTACCGACTAGCAAAG 59.187 55.000 35.41 15.04 42.83 2.77
859 983 0.529378 CCGGTACCGACTAGCAAAGT 59.471 55.000 35.41 0.00 42.80 2.66
860 984 1.745087 CCGGTACCGACTAGCAAAGTA 59.255 52.381 35.41 0.00 39.07 2.24
861 985 2.223433 CCGGTACCGACTAGCAAAGTAG 60.223 54.545 35.41 9.88 39.07 2.57
862 986 2.793933 CGGTACCGACTAGCAAAGTAGC 60.794 54.545 30.64 0.00 39.07 3.58
863 987 2.165030 GGTACCGACTAGCAAAGTAGCA 59.835 50.000 0.00 0.00 39.07 3.49
864 988 3.367703 GGTACCGACTAGCAAAGTAGCAA 60.368 47.826 0.00 0.00 39.07 3.91
865 989 3.611766 ACCGACTAGCAAAGTAGCAAT 57.388 42.857 0.00 0.00 39.07 3.56
866 990 4.730949 ACCGACTAGCAAAGTAGCAATA 57.269 40.909 0.00 0.00 39.07 1.90
867 991 4.430908 ACCGACTAGCAAAGTAGCAATAC 58.569 43.478 0.00 0.00 39.07 1.89
868 992 3.486108 CCGACTAGCAAAGTAGCAATACG 59.514 47.826 0.00 0.00 39.07 3.06
959 1093 0.312416 CCCAATCTCTCCTCGCGTAG 59.688 60.000 5.77 1.91 0.00 3.51
960 1094 1.025812 CCAATCTCTCCTCGCGTAGT 58.974 55.000 5.77 0.00 0.00 2.73
961 1095 2.219458 CCAATCTCTCCTCGCGTAGTA 58.781 52.381 5.77 0.00 0.00 1.82
962 1096 2.224549 CCAATCTCTCCTCGCGTAGTAG 59.775 54.545 5.77 0.00 0.00 2.57
963 1097 2.172851 ATCTCTCCTCGCGTAGTAGG 57.827 55.000 5.77 5.46 0.00 3.18
964 1098 1.117994 TCTCTCCTCGCGTAGTAGGA 58.882 55.000 13.08 13.08 39.63 2.94
1712 4660 7.288810 TCCCTACGTTTTACTCTCTTTTGTA 57.711 36.000 0.00 0.00 0.00 2.41
1783 4753 3.050273 TCAATAATGACGTGCAATGCG 57.950 42.857 0.00 0.00 0.00 4.73
2284 5260 0.179073 CTACAAGCGGATCTGGGTGG 60.179 60.000 3.14 0.00 0.00 4.61
2394 5370 4.492160 GCCGTCATCGCCGAGACA 62.492 66.667 14.09 0.00 34.48 3.41
2670 5738 4.570663 GAGATCCACGACGGGCCG 62.571 72.222 27.06 27.06 34.36 6.13
2746 5814 3.177884 AGGGCAACTGCTGGACCA 61.178 61.111 1.06 0.00 41.70 4.02
2877 5945 3.151022 GAGCTCCTCGAGTGGGGG 61.151 72.222 12.31 0.00 31.39 5.40
2880 5948 2.360980 CTCCTCGAGTGGGGGTCT 59.639 66.667 12.31 0.00 0.00 3.85
3189 9628 9.753674 TTCTCAATTGAACCAAATATAAGACCT 57.246 29.630 9.88 0.00 0.00 3.85
3190 9629 9.753674 TCTCAATTGAACCAAATATAAGACCTT 57.246 29.630 9.88 0.00 0.00 3.50
3219 9658 8.891671 TTTAGTTCAACGTCTTATACTTTGGT 57.108 30.769 0.00 0.00 37.79 3.67
3220 9659 9.979578 TTTAGTTCAACGTCTTATACTTTGGTA 57.020 29.630 0.00 0.00 37.79 3.25
3221 9660 7.880059 AGTTCAACGTCTTATACTTTGGTAC 57.120 36.000 0.00 0.00 37.79 3.34
3222 9661 7.436118 AGTTCAACGTCTTATACTTTGGTACA 58.564 34.615 0.00 0.00 37.79 2.90
3263 9702 7.845066 AAGACTTTCTTTTAGTTCAACGTCT 57.155 32.000 0.00 0.00 31.57 4.18
3264 9703 7.845066 AGACTTTCTTTTAGTTCAACGTCTT 57.155 32.000 0.00 0.00 0.00 3.01
3265 9704 8.937634 AGACTTTCTTTTAGTTCAACGTCTTA 57.062 30.769 0.00 0.00 0.00 2.10
3266 9705 9.543783 AGACTTTCTTTTAGTTCAACGTCTTAT 57.456 29.630 0.00 0.00 0.00 1.73
3277 9716 8.000285 AGTTCAACGTCTTATAGTTTTGTACG 58.000 34.615 0.00 0.00 35.17 3.67
3278 9717 6.932901 TCAACGTCTTATAGTTTTGTACGG 57.067 37.500 0.00 0.00 33.44 4.02
3279 9718 6.446318 TCAACGTCTTATAGTTTTGTACGGT 58.554 36.000 0.00 0.00 33.44 4.83
3280 9719 6.922957 TCAACGTCTTATAGTTTTGTACGGTT 59.077 34.615 0.00 0.00 33.44 4.44
3281 9720 6.934561 ACGTCTTATAGTTTTGTACGGTTC 57.065 37.500 0.00 0.00 33.44 3.62
3282 9721 6.446318 ACGTCTTATAGTTTTGTACGGTTCA 58.554 36.000 0.00 0.00 33.44 3.18
3283 9722 6.922957 ACGTCTTATAGTTTTGTACGGTTCAA 59.077 34.615 0.00 0.00 33.44 2.69
3284 9723 7.599998 ACGTCTTATAGTTTTGTACGGTTCAAT 59.400 33.333 0.93 0.00 33.44 2.57
3285 9724 8.106348 CGTCTTATAGTTTTGTACGGTTCAATC 58.894 37.037 0.93 0.00 0.00 2.67
3286 9725 8.928733 GTCTTATAGTTTTGTACGGTTCAATCA 58.071 33.333 0.93 0.00 0.00 2.57
3287 9726 8.928733 TCTTATAGTTTTGTACGGTTCAATCAC 58.071 33.333 0.93 2.48 0.00 3.06
3288 9727 4.461992 AGTTTTGTACGGTTCAATCACG 57.538 40.909 0.93 0.00 0.00 4.35
3289 9728 3.872771 AGTTTTGTACGGTTCAATCACGT 59.127 39.130 0.93 0.00 43.88 4.49
3290 9729 4.333372 AGTTTTGTACGGTTCAATCACGTT 59.667 37.500 0.93 0.00 41.53 3.99
3291 9730 3.863396 TTGTACGGTTCAATCACGTTG 57.137 42.857 0.00 0.00 41.53 4.10
3292 9731 2.823984 TGTACGGTTCAATCACGTTGT 58.176 42.857 0.00 0.00 41.53 3.32
3293 9732 2.796031 TGTACGGTTCAATCACGTTGTC 59.204 45.455 0.00 0.00 41.53 3.18
3294 9733 0.856641 ACGGTTCAATCACGTTGTCG 59.143 50.000 0.00 0.00 37.61 4.35
3295 9734 1.133407 CGGTTCAATCACGTTGTCGA 58.867 50.000 0.00 0.00 38.95 4.20
3296 9735 1.136721 CGGTTCAATCACGTTGTCGAC 60.137 52.381 9.11 9.11 38.95 4.20
3369 9808 3.340727 GCATTGGCTTGCATCAGTC 57.659 52.632 7.91 0.00 42.31 3.51
3370 9809 0.815734 GCATTGGCTTGCATCAGTCT 59.184 50.000 7.91 0.00 42.31 3.24
3387 9829 6.060028 TCAGTCTTTAAATCTGCACACAAC 57.940 37.500 12.70 0.00 0.00 3.32
3443 9885 4.389576 CTGCTTTGCCGTGCCGTC 62.390 66.667 0.00 0.00 0.00 4.79
3447 9889 2.517402 TTTGCCGTGCCGTCCTTT 60.517 55.556 0.00 0.00 0.00 3.11
3448 9890 2.070654 CTTTGCCGTGCCGTCCTTTT 62.071 55.000 0.00 0.00 0.00 2.27
3449 9891 1.668101 TTTGCCGTGCCGTCCTTTTT 61.668 50.000 0.00 0.00 0.00 1.94
3468 9910 2.855514 TTTTTGCGGGTGAGCTGCC 61.856 57.895 13.44 0.00 38.13 4.85
3469 9911 4.577677 TTTGCGGGTGAGCTGCCA 62.578 61.111 13.44 0.00 38.13 4.92
3472 9914 3.064324 GCGGGTGAGCTGCCATTT 61.064 61.111 3.65 0.00 0.00 2.32
3500 10692 1.132640 GTGATTCCGAAGCACGTGC 59.867 57.895 32.79 32.79 40.78 5.34
3502 10694 2.031919 ATTCCGAAGCACGTGCCA 59.968 55.556 35.51 14.05 43.38 4.92
3503 10695 1.573829 GATTCCGAAGCACGTGCCAA 61.574 55.000 35.51 20.38 43.38 4.52
3511 10703 2.332514 CACGTGCCAAACCTGCAG 59.667 61.111 6.78 6.78 39.87 4.41
3531 10723 3.570125 CAGATAGTGCTCCCGTTCATAGA 59.430 47.826 0.00 0.00 0.00 1.98
3533 10725 1.557099 AGTGCTCCCGTTCATAGACA 58.443 50.000 0.00 0.00 0.00 3.41
3534 10726 2.111384 AGTGCTCCCGTTCATAGACAT 58.889 47.619 0.00 0.00 0.00 3.06
3535 10727 2.101582 AGTGCTCCCGTTCATAGACATC 59.898 50.000 0.00 0.00 0.00 3.06
3540 10732 1.136305 CCCGTTCATAGACATCCGTGT 59.864 52.381 0.00 0.00 42.49 4.49
3567 10759 2.526888 TCACCCTCGTCTTGGTCTAT 57.473 50.000 0.00 0.00 30.70 1.98
3568 10760 3.657398 TCACCCTCGTCTTGGTCTATA 57.343 47.619 0.00 0.00 30.70 1.31
3569 10761 3.552875 TCACCCTCGTCTTGGTCTATAG 58.447 50.000 0.00 0.00 30.70 1.31
3570 10762 3.053842 TCACCCTCGTCTTGGTCTATAGT 60.054 47.826 0.00 0.00 30.70 2.12
3571 10763 4.164796 TCACCCTCGTCTTGGTCTATAGTA 59.835 45.833 0.00 0.00 30.70 1.82
3572 10764 5.071370 CACCCTCGTCTTGGTCTATAGTAT 58.929 45.833 0.00 0.00 30.70 2.12
3573 10765 5.048643 CACCCTCGTCTTGGTCTATAGTATG 60.049 48.000 0.00 0.00 30.70 2.39
3574 10766 5.163120 ACCCTCGTCTTGGTCTATAGTATGA 60.163 44.000 0.00 0.00 0.00 2.15
3589 10781 3.850752 AGTATGACCGATGGGAAGAGAT 58.149 45.455 0.00 0.00 36.97 2.75
3603 10795 3.530535 GAAGAGATGACTTGGGAGAAGC 58.469 50.000 0.00 0.00 0.00 3.86
3608 10800 2.957402 TGACTTGGGAGAAGCAACAT 57.043 45.000 0.00 0.00 0.00 2.71
3652 10844 2.041265 GCCCAAGGAGAGGAGGGA 59.959 66.667 0.00 0.00 44.30 4.20
3663 10855 0.399233 GAGGAGGGAGGGTAGTGCAT 60.399 60.000 0.00 0.00 0.00 3.96
3672 10864 1.682849 GGTAGTGCATGTGGGGTCA 59.317 57.895 0.00 0.00 0.00 4.02
3673 10865 0.037590 GGTAGTGCATGTGGGGTCAA 59.962 55.000 0.00 0.00 0.00 3.18
3694 10886 2.866085 CTTGGAGAGAAGGGCGGCAG 62.866 65.000 12.47 0.00 0.00 4.85
3727 10919 0.390860 CCTAAGCGAGGGTCTGGATG 59.609 60.000 0.00 0.00 42.39 3.51
3731 10923 2.579201 CGAGGGTCTGGATGCGTT 59.421 61.111 0.00 0.00 0.00 4.84
3734 10926 1.945354 GAGGGTCTGGATGCGTTCGA 61.945 60.000 0.00 0.00 0.00 3.71
3763 10955 1.680522 GAGAGAGATGGGCGCAAGGA 61.681 60.000 10.83 0.00 38.28 3.36
3772 10964 4.980805 GCGCAAGGACGTGTGGGA 62.981 66.667 0.30 0.00 38.28 4.37
3775 10967 2.357034 CAAGGACGTGTGGGACCG 60.357 66.667 0.00 0.00 0.00 4.79
3776 10968 2.841044 AAGGACGTGTGGGACCGT 60.841 61.111 0.00 0.00 40.54 4.83
3802 10994 3.748863 TTGTGCGGCAACAATTTGT 57.251 42.105 3.23 0.00 35.16 2.83
3815 11007 1.184970 AATTTGTTGGGGGTGGAGCG 61.185 55.000 0.00 0.00 0.00 5.03
3856 11050 3.450115 CGTCGGGGAGGTGGAGTC 61.450 72.222 0.00 0.00 0.00 3.36
3857 11051 2.283676 GTCGGGGAGGTGGAGTCA 60.284 66.667 0.00 0.00 0.00 3.41
3858 11052 1.686110 GTCGGGGAGGTGGAGTCAT 60.686 63.158 0.00 0.00 0.00 3.06
3859 11053 1.080354 TCGGGGAGGTGGAGTCATT 59.920 57.895 0.00 0.00 0.00 2.57
3860 11054 0.546747 TCGGGGAGGTGGAGTCATTT 60.547 55.000 0.00 0.00 0.00 2.32
3861 11055 0.107654 CGGGGAGGTGGAGTCATTTC 60.108 60.000 0.00 0.00 0.00 2.17
3862 11056 0.256177 GGGGAGGTGGAGTCATTTCC 59.744 60.000 0.00 0.00 37.77 3.13
3863 11057 0.991920 GGGAGGTGGAGTCATTTCCA 59.008 55.000 0.00 0.00 44.84 3.53
3871 11065 4.934797 TGGAGTCATTTCCAAAGATCCT 57.065 40.909 0.00 0.00 44.09 3.24
3873 11067 6.581388 TGGAGTCATTTCCAAAGATCCTAT 57.419 37.500 0.00 0.00 44.09 2.57
3874 11068 6.359804 TGGAGTCATTTCCAAAGATCCTATG 58.640 40.000 0.00 0.00 44.09 2.23
3875 11069 6.158520 TGGAGTCATTTCCAAAGATCCTATGA 59.841 38.462 0.00 0.00 44.09 2.15
3876 11070 7.147248 TGGAGTCATTTCCAAAGATCCTATGAT 60.147 37.037 0.00 0.00 44.09 2.45
3877 11071 7.174599 GGAGTCATTTCCAAAGATCCTATGATG 59.825 40.741 0.00 0.00 37.20 3.07
3878 11072 6.489361 AGTCATTTCCAAAGATCCTATGATGC 59.511 38.462 0.00 0.00 0.00 3.91
3879 11073 6.263842 GTCATTTCCAAAGATCCTATGATGCA 59.736 38.462 0.00 0.00 0.00 3.96
3880 11074 6.834969 TCATTTCCAAAGATCCTATGATGCAA 59.165 34.615 0.00 0.00 0.00 4.08
3881 11075 6.455360 TTTCCAAAGATCCTATGATGCAAC 57.545 37.500 0.00 0.00 0.00 4.17
3882 11076 5.378230 TCCAAAGATCCTATGATGCAACT 57.622 39.130 0.00 0.00 0.00 3.16
3883 11077 5.128205 TCCAAAGATCCTATGATGCAACTG 58.872 41.667 0.00 0.00 0.00 3.16
3884 11078 4.261489 CCAAAGATCCTATGATGCAACTGC 60.261 45.833 0.00 0.00 42.50 4.40
3885 11079 3.137446 AGATCCTATGATGCAACTGCC 57.863 47.619 0.00 0.00 41.18 4.85
3886 11080 2.709934 AGATCCTATGATGCAACTGCCT 59.290 45.455 0.00 0.00 41.18 4.75
3887 11081 2.627515 TCCTATGATGCAACTGCCTC 57.372 50.000 0.00 0.00 41.18 4.70
3888 11082 1.839354 TCCTATGATGCAACTGCCTCA 59.161 47.619 11.34 11.34 46.63 3.86
3889 11083 2.239402 TCCTATGATGCAACTGCCTCAA 59.761 45.455 12.68 3.72 45.93 3.02
3890 11084 2.617308 CCTATGATGCAACTGCCTCAAG 59.383 50.000 12.68 10.95 45.93 3.02
3891 11085 2.502142 ATGATGCAACTGCCTCAAGA 57.498 45.000 12.68 0.00 45.93 3.02
3892 11086 2.275134 TGATGCAACTGCCTCAAGAA 57.725 45.000 7.14 0.00 41.50 2.52
3893 11087 2.799017 TGATGCAACTGCCTCAAGAAT 58.201 42.857 7.14 0.00 41.50 2.40
3894 11088 2.490509 TGATGCAACTGCCTCAAGAATG 59.509 45.455 7.14 0.00 41.50 2.67
3895 11089 2.275134 TGCAACTGCCTCAAGAATGA 57.725 45.000 0.00 0.00 41.18 2.57
3896 11090 2.799017 TGCAACTGCCTCAAGAATGAT 58.201 42.857 0.00 0.00 41.18 2.45
3897 11091 2.751259 TGCAACTGCCTCAAGAATGATC 59.249 45.455 0.00 0.00 41.18 2.92
3898 11092 2.098770 GCAACTGCCTCAAGAATGATCC 59.901 50.000 0.00 0.00 34.37 3.36
3899 11093 3.618351 CAACTGCCTCAAGAATGATCCT 58.382 45.455 0.00 0.00 34.37 3.24
3900 11094 4.015084 CAACTGCCTCAAGAATGATCCTT 58.985 43.478 0.00 0.00 34.37 3.36
3901 11095 3.618351 ACTGCCTCAAGAATGATCCTTG 58.382 45.455 4.35 4.35 41.63 3.61
3902 11096 2.950309 CTGCCTCAAGAATGATCCTTGG 59.050 50.000 9.46 2.66 40.88 3.61
3903 11097 2.577563 TGCCTCAAGAATGATCCTTGGA 59.422 45.455 9.46 0.00 40.88 3.53
3904 11098 3.203710 TGCCTCAAGAATGATCCTTGGAT 59.796 43.478 1.18 1.18 40.88 3.41
3905 11099 3.819902 GCCTCAAGAATGATCCTTGGATC 59.180 47.826 19.70 19.70 40.88 3.36
3906 11100 4.688045 GCCTCAAGAATGATCCTTGGATCA 60.688 45.833 28.02 28.02 44.54 2.92
3912 11106 1.971481 TGATCCTTGGATCATTGCGG 58.029 50.000 23.89 0.00 36.74 5.69
3913 11107 1.212688 TGATCCTTGGATCATTGCGGT 59.787 47.619 23.89 0.00 36.74 5.68
3914 11108 1.605710 GATCCTTGGATCATTGCGGTG 59.394 52.381 21.11 0.00 0.00 4.94
3915 11109 0.394216 TCCTTGGATCATTGCGGTGG 60.394 55.000 0.00 0.00 0.00 4.61
3916 11110 1.434696 CTTGGATCATTGCGGTGGC 59.565 57.895 0.00 0.00 40.52 5.01
3917 11111 2.008268 CTTGGATCATTGCGGTGGCC 62.008 60.000 0.00 0.00 38.85 5.36
3918 11112 2.124151 GGATCATTGCGGTGGCCT 60.124 61.111 3.32 0.00 38.85 5.19
3919 11113 1.754234 GGATCATTGCGGTGGCCTT 60.754 57.895 3.32 0.00 38.85 4.35
3920 11114 1.322538 GGATCATTGCGGTGGCCTTT 61.323 55.000 3.32 0.00 38.85 3.11
3921 11115 0.179129 GATCATTGCGGTGGCCTTTG 60.179 55.000 3.32 0.00 38.85 2.77
3922 11116 0.899717 ATCATTGCGGTGGCCTTTGT 60.900 50.000 3.32 0.00 38.85 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 0.177604 GAGTGATGGTCTGCCTCCAG 59.822 60.000 0.00 0.00 38.42 3.86
128 129 1.267574 GGAGTGATGGTCTGCCTCCA 61.268 60.000 0.00 0.00 41.12 3.86
164 165 3.589988 AGGCAATCGACTACTCACAAAG 58.410 45.455 0.00 0.00 0.00 2.77
169 170 3.023832 TGATGAGGCAATCGACTACTCA 58.976 45.455 11.68 11.68 41.79 3.41
179 180 0.033796 CCACACCCTGATGAGGCAAT 60.034 55.000 0.00 0.00 38.17 3.56
236 237 7.639850 CAGCTATAATTTATGAAACACCACACG 59.360 37.037 0.00 0.00 0.00 4.49
238 239 8.800370 TCAGCTATAATTTATGAAACACCACA 57.200 30.769 0.00 0.00 0.00 4.17
239 240 9.503427 GTTCAGCTATAATTTATGAAACACCAC 57.497 33.333 0.00 0.00 32.13 4.16
278 281 8.696410 TTTTCCAAACGAAGCCAAAATATATC 57.304 30.769 0.00 0.00 0.00 1.63
279 282 9.150348 CTTTTTCCAAACGAAGCCAAAATATAT 57.850 29.630 0.00 0.00 0.00 0.86
280 283 7.600752 CCTTTTTCCAAACGAAGCCAAAATATA 59.399 33.333 0.00 0.00 0.00 0.86
328 434 1.081376 CCGGACAGAGTGACGTGTC 60.081 63.158 11.29 11.29 42.06 3.67
344 450 2.042831 CAGAGCCAAGGGAAAGCCG 61.043 63.158 0.00 0.00 33.83 5.52
345 451 1.680314 CCAGAGCCAAGGGAAAGCC 60.680 63.158 0.00 0.00 0.00 4.35
416 524 2.400408 CGCTTGCGTTTGTATTGTGTTC 59.600 45.455 6.86 0.00 0.00 3.18
417 525 2.380660 CGCTTGCGTTTGTATTGTGTT 58.619 42.857 6.86 0.00 0.00 3.32
420 528 0.591170 AGCGCTTGCGTTTGTATTGT 59.409 45.000 16.38 0.00 45.69 2.71
423 531 1.086696 ATGAGCGCTTGCGTTTGTAT 58.913 45.000 13.26 4.53 45.69 2.29
424 532 1.715993 TATGAGCGCTTGCGTTTGTA 58.284 45.000 13.26 5.22 45.69 2.41
425 533 1.086696 ATATGAGCGCTTGCGTTTGT 58.913 45.000 13.26 6.11 45.69 2.83
426 534 3.526385 ATATATGAGCGCTTGCGTTTG 57.474 42.857 13.26 0.00 45.69 2.93
427 535 4.055360 TGTATATATGAGCGCTTGCGTTT 58.945 39.130 13.26 0.00 45.69 3.60
429 537 3.297830 TGTATATATGAGCGCTTGCGT 57.702 42.857 13.26 3.24 45.69 5.24
430 538 3.542875 GCATGTATATATGAGCGCTTGCG 60.543 47.826 13.26 10.90 45.69 4.85
431 539 3.371898 TGCATGTATATATGAGCGCTTGC 59.628 43.478 13.26 14.13 39.58 4.01
434 542 5.750547 GTGTATGCATGTATATATGAGCGCT 59.249 40.000 11.27 11.27 0.00 5.92
436 544 6.974622 TGAGTGTATGCATGTATATATGAGCG 59.025 38.462 10.16 0.00 0.00 5.03
437 545 7.223582 GGTGAGTGTATGCATGTATATATGAGC 59.776 40.741 10.16 0.00 0.00 4.26
438 546 8.473219 AGGTGAGTGTATGCATGTATATATGAG 58.527 37.037 10.16 0.00 0.00 2.90
440 548 8.473219 AGAGGTGAGTGTATGCATGTATATATG 58.527 37.037 10.16 5.16 0.00 1.78
443 551 6.924913 AGAGGTGAGTGTATGCATGTATAT 57.075 37.500 10.16 0.00 0.00 0.86
444 552 7.724061 TCTTAGAGGTGAGTGTATGCATGTATA 59.276 37.037 10.16 0.00 0.00 1.47
445 553 6.551227 TCTTAGAGGTGAGTGTATGCATGTAT 59.449 38.462 10.16 0.82 0.00 2.29
447 555 4.711846 TCTTAGAGGTGAGTGTATGCATGT 59.288 41.667 10.16 0.00 0.00 3.21
448 556 5.268118 TCTTAGAGGTGAGTGTATGCATG 57.732 43.478 10.16 0.00 0.00 4.06
451 559 4.865365 GTGTTCTTAGAGGTGAGTGTATGC 59.135 45.833 0.00 0.00 0.00 3.14
452 560 6.025749 TGTGTTCTTAGAGGTGAGTGTATG 57.974 41.667 0.00 0.00 0.00 2.39
453 561 6.859112 ATGTGTTCTTAGAGGTGAGTGTAT 57.141 37.500 0.00 0.00 0.00 2.29
454 562 6.717997 TGTATGTGTTCTTAGAGGTGAGTGTA 59.282 38.462 0.00 0.00 0.00 2.90
455 563 5.538813 TGTATGTGTTCTTAGAGGTGAGTGT 59.461 40.000 0.00 0.00 0.00 3.55
456 564 6.025749 TGTATGTGTTCTTAGAGGTGAGTG 57.974 41.667 0.00 0.00 0.00 3.51
457 565 6.634805 CATGTATGTGTTCTTAGAGGTGAGT 58.365 40.000 0.00 0.00 0.00 3.41
458 566 5.521735 GCATGTATGTGTTCTTAGAGGTGAG 59.478 44.000 0.00 0.00 0.00 3.51
460 568 5.063944 GTGCATGTATGTGTTCTTAGAGGTG 59.936 44.000 0.00 0.00 0.00 4.00
461 569 5.178797 GTGCATGTATGTGTTCTTAGAGGT 58.821 41.667 0.00 0.00 0.00 3.85
462 570 5.063944 GTGTGCATGTATGTGTTCTTAGAGG 59.936 44.000 0.00 0.00 0.00 3.69
464 572 4.935205 GGTGTGCATGTATGTGTTCTTAGA 59.065 41.667 0.00 0.00 0.00 2.10
465 573 4.094887 GGGTGTGCATGTATGTGTTCTTAG 59.905 45.833 0.00 0.00 0.00 2.18
466 574 4.006989 GGGTGTGCATGTATGTGTTCTTA 58.993 43.478 0.00 0.00 0.00 2.10
467 575 2.819608 GGGTGTGCATGTATGTGTTCTT 59.180 45.455 0.00 0.00 0.00 2.52
468 576 2.040278 AGGGTGTGCATGTATGTGTTCT 59.960 45.455 0.00 0.00 0.00 3.01
469 577 2.436417 AGGGTGTGCATGTATGTGTTC 58.564 47.619 0.00 0.00 0.00 3.18
470 578 2.584835 AGGGTGTGCATGTATGTGTT 57.415 45.000 0.00 0.00 0.00 3.32
471 579 3.433598 GGATAGGGTGTGCATGTATGTGT 60.434 47.826 0.00 0.00 0.00 3.72
472 580 3.141398 GGATAGGGTGTGCATGTATGTG 58.859 50.000 0.00 0.00 0.00 3.21
474 582 2.373169 AGGGATAGGGTGTGCATGTATG 59.627 50.000 0.00 0.00 0.00 2.39
476 584 2.190398 AGGGATAGGGTGTGCATGTA 57.810 50.000 0.00 0.00 0.00 2.29
478 586 2.639347 TCATAGGGATAGGGTGTGCATG 59.361 50.000 0.00 0.00 0.00 4.06
480 588 2.329267 CTCATAGGGATAGGGTGTGCA 58.671 52.381 0.00 0.00 0.00 4.57
481 589 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
482 590 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
483 591 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
486 594 2.334006 AGGTGCTCATAGGGATAGGG 57.666 55.000 0.00 0.00 0.00 3.53
488 596 3.157881 TCGAAGGTGCTCATAGGGATAG 58.842 50.000 0.00 0.00 0.00 2.08
490 598 1.967066 CTCGAAGGTGCTCATAGGGAT 59.033 52.381 0.00 0.00 0.00 3.85
492 600 1.339610 CTCTCGAAGGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
494 602 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
495 603 3.006112 AGTCTCTCGAAGGTGCTCATA 57.994 47.619 0.00 0.00 0.00 2.15
497 605 1.621992 AAGTCTCTCGAAGGTGCTCA 58.378 50.000 0.00 0.00 0.00 4.26
498 606 2.478879 GCTAAGTCTCTCGAAGGTGCTC 60.479 54.545 0.00 0.00 0.00 4.26
500 608 1.470112 GGCTAAGTCTCTCGAAGGTGC 60.470 57.143 0.00 0.00 0.00 5.01
501 609 1.202200 CGGCTAAGTCTCTCGAAGGTG 60.202 57.143 0.00 0.00 0.00 4.00
502 610 1.096416 CGGCTAAGTCTCTCGAAGGT 58.904 55.000 0.00 0.00 0.00 3.50
504 612 0.248702 GCCGGCTAAGTCTCTCGAAG 60.249 60.000 22.15 0.00 0.00 3.79
505 613 0.963856 TGCCGGCTAAGTCTCTCGAA 60.964 55.000 29.70 0.00 0.00 3.71
507 615 0.952280 TATGCCGGCTAAGTCTCTCG 59.048 55.000 29.70 0.00 0.00 4.04
508 616 2.558795 TGATATGCCGGCTAAGTCTCTC 59.441 50.000 29.70 12.76 0.00 3.20
509 617 2.598565 TGATATGCCGGCTAAGTCTCT 58.401 47.619 29.70 3.16 0.00 3.10
510 618 3.194542 AGATGATATGCCGGCTAAGTCTC 59.805 47.826 29.70 17.03 0.00 3.36
511 619 3.169099 AGATGATATGCCGGCTAAGTCT 58.831 45.455 29.70 19.01 0.00 3.24
512 620 3.601443 AGATGATATGCCGGCTAAGTC 57.399 47.619 29.70 19.55 0.00 3.01
513 621 5.246203 TCTTAAGATGATATGCCGGCTAAGT 59.754 40.000 29.70 13.44 0.00 2.24
514 622 5.724328 TCTTAAGATGATATGCCGGCTAAG 58.276 41.667 29.70 21.57 0.00 2.18
515 623 5.738619 TCTTAAGATGATATGCCGGCTAA 57.261 39.130 29.70 16.29 0.00 3.09
516 624 5.939764 ATCTTAAGATGATATGCCGGCTA 57.060 39.130 29.70 17.52 32.68 3.93
518 626 5.886960 AAATCTTAAGATGATATGCCGGC 57.113 39.130 22.73 22.73 34.49 6.13
519 627 6.811665 TCGTAAATCTTAAGATGATATGCCGG 59.188 38.462 18.61 0.00 34.49 6.13
520 628 7.812309 TCGTAAATCTTAAGATGATATGCCG 57.188 36.000 18.61 13.49 34.49 5.69
521 629 9.209175 ACTTCGTAAATCTTAAGATGATATGCC 57.791 33.333 18.61 3.91 34.49 4.40
526 634 7.435488 CGGTGACTTCGTAAATCTTAAGATGAT 59.565 37.037 18.61 12.88 34.49 2.45
527 635 6.750501 CGGTGACTTCGTAAATCTTAAGATGA 59.249 38.462 18.61 8.72 34.49 2.92
528 636 6.530534 ACGGTGACTTCGTAAATCTTAAGATG 59.469 38.462 18.61 6.47 39.22 2.90
529 637 6.628185 ACGGTGACTTCGTAAATCTTAAGAT 58.372 36.000 12.37 12.37 39.22 2.40
530 638 6.017400 ACGGTGACTTCGTAAATCTTAAGA 57.983 37.500 7.82 7.82 39.22 2.10
531 639 6.021939 CGTACGGTGACTTCGTAAATCTTAAG 60.022 42.308 7.57 0.00 43.37 1.85
532 640 5.794945 CGTACGGTGACTTCGTAAATCTTAA 59.205 40.000 7.57 0.00 43.37 1.85
533 641 5.106712 ACGTACGGTGACTTCGTAAATCTTA 60.107 40.000 21.06 0.00 43.37 2.10
535 643 3.189287 ACGTACGGTGACTTCGTAAATCT 59.811 43.478 21.06 0.00 43.37 2.40
536 644 3.492313 ACGTACGGTGACTTCGTAAATC 58.508 45.455 21.06 0.00 43.37 2.17
537 645 3.559238 ACGTACGGTGACTTCGTAAAT 57.441 42.857 21.06 0.00 43.37 1.40
562 670 0.453950 AGACGTTTCCATCGACGACG 60.454 55.000 0.00 0.00 41.53 5.12
563 671 2.159599 AGTAGACGTTTCCATCGACGAC 60.160 50.000 0.00 0.00 41.53 4.34
565 673 2.438583 GAGTAGACGTTTCCATCGACG 58.561 52.381 0.00 0.00 44.34 5.12
567 675 1.747355 GGGAGTAGACGTTTCCATCGA 59.253 52.381 10.26 0.00 32.50 3.59
568 676 1.475280 TGGGAGTAGACGTTTCCATCG 59.525 52.381 10.26 0.00 32.50 3.84
569 677 2.496470 AGTGGGAGTAGACGTTTCCATC 59.504 50.000 10.26 4.39 32.50 3.51
570 678 2.233922 CAGTGGGAGTAGACGTTTCCAT 59.766 50.000 10.26 0.00 32.50 3.41
573 681 3.655276 TTCAGTGGGAGTAGACGTTTC 57.345 47.619 0.00 0.00 0.00 2.78
574 682 3.802675 GCTTTCAGTGGGAGTAGACGTTT 60.803 47.826 0.00 0.00 0.00 3.60
575 683 2.288886 GCTTTCAGTGGGAGTAGACGTT 60.289 50.000 0.00 0.00 0.00 3.99
576 684 1.272769 GCTTTCAGTGGGAGTAGACGT 59.727 52.381 0.00 0.00 0.00 4.34
578 686 1.272769 ACGCTTTCAGTGGGAGTAGAC 59.727 52.381 0.00 0.00 0.00 2.59
579 687 1.629043 ACGCTTTCAGTGGGAGTAGA 58.371 50.000 0.00 0.00 0.00 2.59
580 688 3.707793 GATACGCTTTCAGTGGGAGTAG 58.292 50.000 0.00 0.00 0.00 2.57
581 689 2.098607 CGATACGCTTTCAGTGGGAGTA 59.901 50.000 0.00 0.00 0.00 2.59
583 691 1.560923 CGATACGCTTTCAGTGGGAG 58.439 55.000 0.00 0.00 0.00 4.30
596 704 4.782252 TTTTAGGATTTTCGGCGATACG 57.218 40.909 11.76 0.00 0.00 3.06
597 705 9.113876 CATTTATTTTAGGATTTTCGGCGATAC 57.886 33.333 11.76 0.00 0.00 2.24
598 706 9.058174 TCATTTATTTTAGGATTTTCGGCGATA 57.942 29.630 11.76 2.15 0.00 2.92
599 707 7.936584 TCATTTATTTTAGGATTTTCGGCGAT 58.063 30.769 11.76 0.00 0.00 4.58
600 708 7.323049 TCATTTATTTTAGGATTTTCGGCGA 57.677 32.000 4.99 4.99 0.00 5.54
601 709 7.913297 TCTTCATTTATTTTAGGATTTTCGGCG 59.087 33.333 0.00 0.00 0.00 6.46
602 710 9.581099 TTCTTCATTTATTTTAGGATTTTCGGC 57.419 29.630 0.00 0.00 0.00 5.54
615 723 9.403110 GATGCTCGCATATTTCTTCATTTATTT 57.597 29.630 4.10 0.00 36.70 1.40
616 724 8.570488 TGATGCTCGCATATTTCTTCATTTATT 58.430 29.630 4.10 0.00 36.70 1.40
618 726 7.227314 ACTGATGCTCGCATATTTCTTCATTTA 59.773 33.333 4.10 0.00 36.70 1.40
620 728 5.530171 ACTGATGCTCGCATATTTCTTCATT 59.470 36.000 4.10 0.00 36.70 2.57
621 729 5.061853 ACTGATGCTCGCATATTTCTTCAT 58.938 37.500 4.10 0.00 36.70 2.57
623 731 5.694006 AGTACTGATGCTCGCATATTTCTTC 59.306 40.000 4.10 0.00 36.70 2.87
625 733 5.207110 AGTACTGATGCTCGCATATTTCT 57.793 39.130 4.10 0.00 36.70 2.52
626 734 5.463392 TCAAGTACTGATGCTCGCATATTTC 59.537 40.000 4.10 0.00 36.70 2.17
627 735 5.359756 TCAAGTACTGATGCTCGCATATTT 58.640 37.500 4.10 0.00 36.70 1.40
628 736 4.948847 TCAAGTACTGATGCTCGCATATT 58.051 39.130 4.10 0.00 36.70 1.28
630 738 4.385358 TTCAAGTACTGATGCTCGCATA 57.615 40.909 4.10 0.00 36.70 3.14
631 739 2.967599 TCAAGTACTGATGCTCGCAT 57.032 45.000 3.70 3.70 39.69 4.73
632 740 2.741759 TTCAAGTACTGATGCTCGCA 57.258 45.000 0.00 0.00 32.78 5.10
633 741 2.541762 GGATTCAAGTACTGATGCTCGC 59.458 50.000 0.00 0.00 32.78 5.03
634 742 4.052159 AGGATTCAAGTACTGATGCTCG 57.948 45.455 0.00 0.00 32.78 5.03
635 743 6.426328 CCAATAGGATTCAAGTACTGATGCTC 59.574 42.308 10.17 1.71 36.89 4.26
637 745 6.058183 ACCAATAGGATTCAAGTACTGATGC 58.942 40.000 0.00 0.00 38.69 3.91
638 746 7.440556 CAGACCAATAGGATTCAAGTACTGATG 59.559 40.741 0.00 0.00 38.69 3.07
640 748 6.667848 TCAGACCAATAGGATTCAAGTACTGA 59.332 38.462 0.00 0.00 38.69 3.41
642 750 6.098982 CCTCAGACCAATAGGATTCAAGTACT 59.901 42.308 0.00 0.00 38.69 2.73
643 751 6.098409 TCCTCAGACCAATAGGATTCAAGTAC 59.902 42.308 0.00 0.00 34.46 2.73
644 752 6.202331 TCCTCAGACCAATAGGATTCAAGTA 58.798 40.000 0.00 0.00 34.46 2.24
645 753 5.032846 TCCTCAGACCAATAGGATTCAAGT 58.967 41.667 0.00 0.00 34.46 3.16
646 754 5.620738 TCCTCAGACCAATAGGATTCAAG 57.379 43.478 0.00 0.00 34.46 3.02
647 755 6.043243 GGTATCCTCAGACCAATAGGATTCAA 59.957 42.308 8.30 0.00 45.82 2.69
648 756 5.544176 GGTATCCTCAGACCAATAGGATTCA 59.456 44.000 8.30 0.00 45.82 2.57
649 757 5.544176 TGGTATCCTCAGACCAATAGGATTC 59.456 44.000 8.30 3.93 45.82 2.52
650 758 5.308237 GTGGTATCCTCAGACCAATAGGATT 59.692 44.000 8.30 0.00 45.72 3.01
651 759 4.841246 GTGGTATCCTCAGACCAATAGGAT 59.159 45.833 8.10 8.10 45.72 3.24
652 760 4.078571 AGTGGTATCCTCAGACCAATAGGA 60.079 45.833 0.00 0.00 45.72 2.94
653 761 4.039730 CAGTGGTATCCTCAGACCAATAGG 59.960 50.000 0.00 0.00 45.72 2.57
654 762 4.651503 ACAGTGGTATCCTCAGACCAATAG 59.348 45.833 0.00 0.00 45.72 1.73
655 763 4.620723 ACAGTGGTATCCTCAGACCAATA 58.379 43.478 0.00 0.00 45.72 1.90
656 764 3.452627 GACAGTGGTATCCTCAGACCAAT 59.547 47.826 0.00 0.00 45.72 3.16
657 765 2.832129 GACAGTGGTATCCTCAGACCAA 59.168 50.000 0.00 0.00 45.72 3.67
658 766 2.457598 GACAGTGGTATCCTCAGACCA 58.542 52.381 0.00 0.00 41.89 4.02
659 767 1.757699 GGACAGTGGTATCCTCAGACC 59.242 57.143 0.00 0.00 34.06 3.85
660 768 1.757699 GGGACAGTGGTATCCTCAGAC 59.242 57.143 0.00 0.00 35.15 3.51
661 769 1.646447 AGGGACAGTGGTATCCTCAGA 59.354 52.381 0.00 0.00 35.15 3.27
662 770 2.035632 GAGGGACAGTGGTATCCTCAG 58.964 57.143 14.38 0.00 42.50 3.35
663 771 1.646447 AGAGGGACAGTGGTATCCTCA 59.354 52.381 18.73 0.00 44.02 3.86
664 772 2.463047 AGAGGGACAGTGGTATCCTC 57.537 55.000 12.47 12.47 42.91 3.71
665 773 3.630311 GGTTAGAGGGACAGTGGTATCCT 60.630 52.174 0.00 0.00 35.15 3.24
666 774 2.699321 GGTTAGAGGGACAGTGGTATCC 59.301 54.545 0.00 0.00 0.00 2.59
667 775 3.371965 TGGTTAGAGGGACAGTGGTATC 58.628 50.000 0.00 0.00 0.00 2.24
668 776 3.484953 TGGTTAGAGGGACAGTGGTAT 57.515 47.619 0.00 0.00 0.00 2.73
669 777 3.484953 ATGGTTAGAGGGACAGTGGTA 57.515 47.619 0.00 0.00 0.00 3.25
670 778 2.344093 ATGGTTAGAGGGACAGTGGT 57.656 50.000 0.00 0.00 0.00 4.16
671 779 3.104512 TGTATGGTTAGAGGGACAGTGG 58.895 50.000 0.00 0.00 0.00 4.00
672 780 4.223032 AGTTGTATGGTTAGAGGGACAGTG 59.777 45.833 0.00 0.00 0.00 3.66
673 781 4.426704 AGTTGTATGGTTAGAGGGACAGT 58.573 43.478 0.00 0.00 0.00 3.55
674 782 5.420409 GAAGTTGTATGGTTAGAGGGACAG 58.580 45.833 0.00 0.00 0.00 3.51
675 783 4.081862 CGAAGTTGTATGGTTAGAGGGACA 60.082 45.833 0.00 0.00 0.00 4.02
676 784 4.081807 ACGAAGTTGTATGGTTAGAGGGAC 60.082 45.833 0.00 0.00 37.78 4.46
677 785 4.091549 ACGAAGTTGTATGGTTAGAGGGA 58.908 43.478 0.00 0.00 37.78 4.20
678 786 4.467198 ACGAAGTTGTATGGTTAGAGGG 57.533 45.455 0.00 0.00 37.78 4.30
702 810 9.971922 GGCGAAGGTTATACTTAGTAATAGAAA 57.028 33.333 0.00 0.00 0.00 2.52
703 811 8.292448 CGGCGAAGGTTATACTTAGTAATAGAA 58.708 37.037 0.00 0.00 0.00 2.10
704 812 7.573843 GCGGCGAAGGTTATACTTAGTAATAGA 60.574 40.741 12.98 0.00 0.00 1.98
705 813 6.525976 GCGGCGAAGGTTATACTTAGTAATAG 59.474 42.308 12.98 0.00 0.00 1.73
706 814 6.381801 GCGGCGAAGGTTATACTTAGTAATA 58.618 40.000 12.98 0.00 0.00 0.98
707 815 5.225642 GCGGCGAAGGTTATACTTAGTAAT 58.774 41.667 12.98 0.00 0.00 1.89
708 816 4.499696 GGCGGCGAAGGTTATACTTAGTAA 60.500 45.833 12.98 0.00 0.00 2.24
709 817 3.004734 GGCGGCGAAGGTTATACTTAGTA 59.995 47.826 12.98 0.00 0.00 1.82
710 818 2.223900 GGCGGCGAAGGTTATACTTAGT 60.224 50.000 12.98 0.00 0.00 2.24
711 819 2.401351 GGCGGCGAAGGTTATACTTAG 58.599 52.381 12.98 0.00 0.00 2.18
712 820 1.269206 CGGCGGCGAAGGTTATACTTA 60.269 52.381 29.19 0.00 0.00 2.24
713 821 0.529119 CGGCGGCGAAGGTTATACTT 60.529 55.000 29.19 0.00 0.00 2.24
730 838 2.581409 GTGTACGCGTCCATCCGG 60.581 66.667 18.63 0.00 0.00 5.14
731 839 2.947621 CGTGTACGCGTCCATCCG 60.948 66.667 18.63 7.89 0.00 4.18
732 840 1.444895 AACGTGTACGCGTCCATCC 60.445 57.895 32.18 0.00 45.00 3.51
775 883 6.411630 TTGTGCAATACGGAGTTTACATAC 57.588 37.500 0.00 0.00 37.78 2.39
776 884 5.583061 CCTTGTGCAATACGGAGTTTACATA 59.417 40.000 0.00 0.00 37.78 2.29
777 885 4.394920 CCTTGTGCAATACGGAGTTTACAT 59.605 41.667 0.00 0.00 37.78 2.29
782 898 2.851263 TCCTTGTGCAATACGGAGTT 57.149 45.000 0.00 0.00 37.78 3.01
857 981 3.691118 TCAAGGACGTACGTATTGCTACT 59.309 43.478 28.15 14.54 0.00 2.57
858 982 4.019919 TCAAGGACGTACGTATTGCTAC 57.980 45.455 28.15 14.28 0.00 3.58
859 983 4.906065 ATCAAGGACGTACGTATTGCTA 57.094 40.909 28.15 18.65 0.00 3.49
860 984 3.795623 ATCAAGGACGTACGTATTGCT 57.204 42.857 28.15 21.17 0.00 3.91
861 985 4.110482 AGAATCAAGGACGTACGTATTGC 58.890 43.478 28.15 19.40 0.00 3.56
862 986 5.579718 AGAGAATCAAGGACGTACGTATTG 58.420 41.667 27.52 27.52 37.82 1.90
863 987 5.503683 CGAGAGAATCAAGGACGTACGTATT 60.504 44.000 22.87 16.57 37.82 1.89
864 988 4.025061 CGAGAGAATCAAGGACGTACGTAT 60.025 45.833 22.87 10.52 37.82 3.06
865 989 3.308053 CGAGAGAATCAAGGACGTACGTA 59.692 47.826 22.87 5.45 37.82 3.57
866 990 2.095532 CGAGAGAATCAAGGACGTACGT 59.904 50.000 23.04 23.04 37.82 3.57
867 991 2.095532 ACGAGAGAATCAAGGACGTACG 59.904 50.000 15.01 15.01 37.82 3.67
868 992 3.126514 TGACGAGAGAATCAAGGACGTAC 59.873 47.826 0.00 0.00 37.82 3.67
915 1039 5.298276 AGGCGACAACTATTTTCTGTTTGAA 59.702 36.000 0.00 0.00 0.00 2.69
959 1093 2.728839 CGATCGAGGTACGTACTCCTAC 59.271 54.545 24.07 8.13 43.13 3.18
960 1094 2.623416 TCGATCGAGGTACGTACTCCTA 59.377 50.000 24.07 9.32 43.13 2.94
961 1095 1.410517 TCGATCGAGGTACGTACTCCT 59.589 52.381 24.07 14.63 43.13 3.69
962 1096 1.858091 TCGATCGAGGTACGTACTCC 58.142 55.000 24.07 14.90 43.13 3.85
963 1097 3.703558 GATCGATCGAGGTACGTACTC 57.296 52.381 23.84 17.41 43.13 2.59
1770 4740 2.480102 GCATCGCATTGCACGTCA 59.520 55.556 9.69 0.00 42.31 4.35
1783 4753 1.029681 TTGCTCATCCTGCATGCATC 58.970 50.000 22.97 5.29 40.34 3.91
2394 5370 1.300697 GTTGAACCACGAGTCGCCT 60.301 57.895 13.59 0.00 0.00 5.52
2600 5668 2.092538 AGGAAGATGATGCTGTTCTGGG 60.093 50.000 0.00 0.00 0.00 4.45
2670 5738 4.304110 TCCAGTTCTTGATGACGTTGTAC 58.696 43.478 0.00 0.00 0.00 2.90
2746 5814 1.003355 CCTCGCATGTCACCTTGGT 60.003 57.895 0.00 0.00 0.00 3.67
2877 5945 3.902086 GCGGCGGAGACCCTAGAC 61.902 72.222 9.78 0.00 0.00 2.59
3132 9571 4.727507 TCTGAGTGAGATAAAGGACTGC 57.272 45.455 0.00 0.00 0.00 4.40
3193 9632 9.328845 ACCAAAGTATAAGACGTTGAACTAAAA 57.671 29.630 4.69 0.00 46.80 1.52
3194 9633 8.891671 ACCAAAGTATAAGACGTTGAACTAAA 57.108 30.769 4.69 0.00 46.80 1.85
3195 9634 9.410556 GTACCAAAGTATAAGACGTTGAACTAA 57.589 33.333 4.69 0.00 46.80 2.24
3196 9635 8.575589 TGTACCAAAGTATAAGACGTTGAACTA 58.424 33.333 4.69 0.00 46.80 2.24
3197 9636 7.436118 TGTACCAAAGTATAAGACGTTGAACT 58.564 34.615 4.69 0.00 46.80 3.01
3198 9637 7.642071 TGTACCAAAGTATAAGACGTTGAAC 57.358 36.000 4.69 3.89 46.80 3.18
3199 9638 7.385752 CCTTGTACCAAAGTATAAGACGTTGAA 59.614 37.037 10.25 0.00 46.80 2.69
3200 9639 6.869913 CCTTGTACCAAAGTATAAGACGTTGA 59.130 38.462 10.25 0.00 46.80 3.18
3201 9640 6.091713 CCCTTGTACCAAAGTATAAGACGTTG 59.908 42.308 10.25 0.00 45.61 4.10
3202 9641 6.168389 CCCTTGTACCAAAGTATAAGACGTT 58.832 40.000 10.25 0.00 45.61 3.99
3203 9642 5.246883 ACCCTTGTACCAAAGTATAAGACGT 59.753 40.000 10.25 0.00 45.61 4.34
3204 9643 5.727434 ACCCTTGTACCAAAGTATAAGACG 58.273 41.667 10.25 4.25 45.61 4.18
3205 9644 7.614494 TGTACCCTTGTACCAAAGTATAAGAC 58.386 38.462 10.25 3.43 45.61 3.01
3206 9645 7.795534 TGTACCCTTGTACCAAAGTATAAGA 57.204 36.000 10.25 0.00 45.61 2.10
3210 9649 9.984590 ATTTTATGTACCCTTGTACCAAAGTAT 57.015 29.630 0.81 0.00 45.59 2.12
3212 9651 9.984590 ATATTTTATGTACCCTTGTACCAAAGT 57.015 29.630 0.81 2.05 45.59 2.66
3237 9676 9.543783 AGACGTTGAACTAAAAGAAAGTCTTAT 57.456 29.630 0.00 0.00 35.27 1.73
3238 9677 8.937634 AGACGTTGAACTAAAAGAAAGTCTTA 57.062 30.769 0.00 0.00 35.27 2.10
3239 9678 7.845066 AGACGTTGAACTAAAAGAAAGTCTT 57.155 32.000 0.00 0.00 38.59 3.01
3240 9679 7.845066 AAGACGTTGAACTAAAAGAAAGTCT 57.155 32.000 0.00 0.00 38.33 3.24
3251 9690 9.117145 CGTACAAAACTATAAGACGTTGAACTA 57.883 33.333 0.00 0.00 0.00 2.24
3252 9691 7.115378 CCGTACAAAACTATAAGACGTTGAACT 59.885 37.037 0.00 0.00 0.00 3.01
3253 9692 7.096065 ACCGTACAAAACTATAAGACGTTGAAC 60.096 37.037 0.00 0.00 0.00 3.18
3254 9693 6.922957 ACCGTACAAAACTATAAGACGTTGAA 59.077 34.615 0.00 0.00 0.00 2.69
3255 9694 6.446318 ACCGTACAAAACTATAAGACGTTGA 58.554 36.000 0.00 0.00 0.00 3.18
3256 9695 6.695292 ACCGTACAAAACTATAAGACGTTG 57.305 37.500 0.00 0.00 0.00 4.10
3257 9696 6.922957 TGAACCGTACAAAACTATAAGACGTT 59.077 34.615 0.00 0.00 0.00 3.99
3258 9697 6.446318 TGAACCGTACAAAACTATAAGACGT 58.554 36.000 0.00 0.00 0.00 4.34
3259 9698 6.932901 TGAACCGTACAAAACTATAAGACG 57.067 37.500 0.00 0.00 0.00 4.18
3260 9699 8.928733 TGATTGAACCGTACAAAACTATAAGAC 58.071 33.333 0.00 0.00 0.00 3.01
3261 9700 8.928733 GTGATTGAACCGTACAAAACTATAAGA 58.071 33.333 0.00 0.00 0.00 2.10
3262 9701 7.896274 CGTGATTGAACCGTACAAAACTATAAG 59.104 37.037 0.00 0.00 0.00 1.73
3263 9702 7.384660 ACGTGATTGAACCGTACAAAACTATAA 59.615 33.333 0.00 0.00 32.22 0.98
3264 9703 6.867816 ACGTGATTGAACCGTACAAAACTATA 59.132 34.615 0.00 0.00 32.22 1.31
3265 9704 5.697633 ACGTGATTGAACCGTACAAAACTAT 59.302 36.000 0.00 0.00 32.22 2.12
3266 9705 5.049167 ACGTGATTGAACCGTACAAAACTA 58.951 37.500 0.00 0.00 32.22 2.24
3267 9706 3.872771 ACGTGATTGAACCGTACAAAACT 59.127 39.130 0.00 0.00 32.22 2.66
3268 9707 4.199840 ACGTGATTGAACCGTACAAAAC 57.800 40.909 0.00 0.00 32.22 2.43
3269 9708 4.094590 ACAACGTGATTGAACCGTACAAAA 59.905 37.500 0.00 0.00 41.23 2.44
3270 9709 3.622163 ACAACGTGATTGAACCGTACAAA 59.378 39.130 0.00 0.00 41.23 2.83
3271 9710 3.196463 ACAACGTGATTGAACCGTACAA 58.804 40.909 0.00 0.00 41.23 2.41
3272 9711 2.796031 GACAACGTGATTGAACCGTACA 59.204 45.455 0.00 0.00 41.23 2.90
3273 9712 2.160065 CGACAACGTGATTGAACCGTAC 60.160 50.000 0.00 0.00 41.23 3.67
3274 9713 2.052891 CGACAACGTGATTGAACCGTA 58.947 47.619 0.00 0.00 41.23 4.02
3275 9714 0.856641 CGACAACGTGATTGAACCGT 59.143 50.000 0.00 0.00 41.23 4.83
3276 9715 1.133407 TCGACAACGTGATTGAACCG 58.867 50.000 0.00 0.00 41.23 4.44
3277 9716 1.862201 TGTCGACAACGTGATTGAACC 59.138 47.619 17.62 0.00 41.23 3.62
3278 9717 3.531982 CTTGTCGACAACGTGATTGAAC 58.468 45.455 26.53 0.00 41.23 3.18
3279 9718 2.542178 CCTTGTCGACAACGTGATTGAA 59.458 45.455 26.53 2.91 41.23 2.69
3280 9719 2.131972 CCTTGTCGACAACGTGATTGA 58.868 47.619 26.53 3.68 41.23 2.57
3281 9720 2.131972 TCCTTGTCGACAACGTGATTG 58.868 47.619 26.53 14.68 44.60 2.67
3282 9721 2.519377 TCCTTGTCGACAACGTGATT 57.481 45.000 26.53 0.00 40.69 2.57
3283 9722 2.519377 TTCCTTGTCGACAACGTGAT 57.481 45.000 26.53 0.00 40.69 3.06
3284 9723 1.928503 GTTTCCTTGTCGACAACGTGA 59.071 47.619 26.53 18.99 40.69 4.35
3285 9724 1.661617 TGTTTCCTTGTCGACAACGTG 59.338 47.619 26.53 16.78 40.69 4.49
3286 9725 1.931172 CTGTTTCCTTGTCGACAACGT 59.069 47.619 26.53 0.00 40.69 3.99
3287 9726 2.198406 TCTGTTTCCTTGTCGACAACG 58.802 47.619 26.53 21.72 41.26 4.10
3288 9727 3.454375 TCTCTGTTTCCTTGTCGACAAC 58.546 45.455 26.53 17.58 0.00 3.32
3289 9728 3.812156 TCTCTGTTTCCTTGTCGACAA 57.188 42.857 28.07 28.07 0.00 3.18
3290 9729 3.812156 TTCTCTGTTTCCTTGTCGACA 57.188 42.857 15.76 15.76 0.00 4.35
3291 9730 5.479716 TTTTTCTCTGTTTCCTTGTCGAC 57.520 39.130 9.11 9.11 0.00 4.20
3292 9731 7.214381 TCTATTTTTCTCTGTTTCCTTGTCGA 58.786 34.615 0.00 0.00 0.00 4.20
3293 9732 7.421530 TCTATTTTTCTCTGTTTCCTTGTCG 57.578 36.000 0.00 0.00 0.00 4.35
3333 9772 7.293018 GCCAATGCTTCTTTCAAGTTTAATTG 58.707 34.615 0.00 0.00 33.53 2.32
3356 9795 5.338365 CAGATTTAAAGACTGATGCAAGCC 58.662 41.667 15.61 0.00 34.07 4.35
3367 9806 6.019881 GGTTTGTTGTGTGCAGATTTAAAGAC 60.020 38.462 0.00 0.00 0.00 3.01
3368 9807 6.039616 GGTTTGTTGTGTGCAGATTTAAAGA 58.960 36.000 0.00 0.00 0.00 2.52
3369 9808 5.809562 TGGTTTGTTGTGTGCAGATTTAAAG 59.190 36.000 0.00 0.00 0.00 1.85
3370 9809 5.724328 TGGTTTGTTGTGTGCAGATTTAAA 58.276 33.333 0.00 0.00 0.00 1.52
3387 9829 4.440880 TGGATTGAAACTTGCTTGGTTTG 58.559 39.130 6.91 0.00 37.07 2.93
3451 9893 3.294493 GGCAGCTCACCCGCAAAA 61.294 61.111 0.00 0.00 0.00 2.44
3452 9894 3.866379 ATGGCAGCTCACCCGCAAA 62.866 57.895 0.00 0.00 0.00 3.68
3454 9896 3.866379 AAATGGCAGCTCACCCGCA 62.866 57.895 0.00 0.00 0.00 5.69
3455 9897 2.158561 AAAAATGGCAGCTCACCCGC 62.159 55.000 0.00 0.00 0.00 6.13
3456 9898 1.966762 AAAAATGGCAGCTCACCCG 59.033 52.632 0.00 0.00 0.00 5.28
3480 9922 1.375523 ACGTGCTTCGGAATCACCC 60.376 57.895 16.50 0.00 44.69 4.61
3481 9923 1.787847 CACGTGCTTCGGAATCACC 59.212 57.895 16.50 2.74 44.69 4.02
3482 9924 1.132640 GCACGTGCTTCGGAATCAC 59.867 57.895 32.55 13.28 44.69 3.06
3483 9925 2.032634 GGCACGTGCTTCGGAATCA 61.033 57.895 36.84 0.00 44.69 2.57
3494 10686 1.518056 ATCTGCAGGTTTGGCACGTG 61.518 55.000 15.13 12.28 43.11 4.49
3511 10703 3.318275 TGTCTATGAACGGGAGCACTATC 59.682 47.826 0.00 0.00 0.00 2.08
3531 10723 2.612972 GGTGAAGTCATGACACGGATGT 60.613 50.000 27.02 1.97 43.71 3.06
3533 10725 1.066143 GGGTGAAGTCATGACACGGAT 60.066 52.381 27.02 8.07 35.68 4.18
3534 10726 0.320374 GGGTGAAGTCATGACACGGA 59.680 55.000 27.02 5.75 35.68 4.69
3535 10727 0.321671 AGGGTGAAGTCATGACACGG 59.678 55.000 27.02 0.00 35.68 4.94
3540 10732 1.924731 AGACGAGGGTGAAGTCATGA 58.075 50.000 0.00 0.00 37.36 3.07
3550 10742 3.666345 ACTATAGACCAAGACGAGGGT 57.334 47.619 6.78 0.00 40.96 4.34
3567 10759 4.448720 TCTCTTCCCATCGGTCATACTA 57.551 45.455 0.00 0.00 0.00 1.82
3568 10760 3.314307 TCTCTTCCCATCGGTCATACT 57.686 47.619 0.00 0.00 0.00 2.12
3569 10761 3.574396 TCATCTCTTCCCATCGGTCATAC 59.426 47.826 0.00 0.00 0.00 2.39
3570 10762 3.574396 GTCATCTCTTCCCATCGGTCATA 59.426 47.826 0.00 0.00 0.00 2.15
3571 10763 2.366916 GTCATCTCTTCCCATCGGTCAT 59.633 50.000 0.00 0.00 0.00 3.06
3572 10764 1.757118 GTCATCTCTTCCCATCGGTCA 59.243 52.381 0.00 0.00 0.00 4.02
3573 10765 2.035632 AGTCATCTCTTCCCATCGGTC 58.964 52.381 0.00 0.00 0.00 4.79
3574 10766 2.166907 AGTCATCTCTTCCCATCGGT 57.833 50.000 0.00 0.00 0.00 4.69
3578 10770 2.776536 CTCCCAAGTCATCTCTTCCCAT 59.223 50.000 0.00 0.00 0.00 4.00
3579 10771 2.191400 CTCCCAAGTCATCTCTTCCCA 58.809 52.381 0.00 0.00 0.00 4.37
3589 10781 2.507484 CATGTTGCTTCTCCCAAGTCA 58.493 47.619 0.00 0.00 0.00 3.41
3603 10795 1.001048 CTGGCTCACACAACCATGTTG 60.001 52.381 5.46 5.46 37.82 3.33
3608 10800 2.055689 CTCCCTGGCTCACACAACCA 62.056 60.000 0.00 0.00 0.00 3.67
3631 10823 1.077858 CTCCTCTCCTTGGGCTTGC 60.078 63.158 0.00 0.00 0.00 4.01
3652 10844 1.541368 ACCCCACATGCACTACCCT 60.541 57.895 0.00 0.00 0.00 4.34
3663 10855 1.059584 TCTCCAAGCTTGACCCCACA 61.060 55.000 28.05 1.32 0.00 4.17
3672 10864 1.298014 CGCCCTTCTCTCCAAGCTT 59.702 57.895 0.00 0.00 0.00 3.74
3673 10865 2.664081 CCGCCCTTCTCTCCAAGCT 61.664 63.158 0.00 0.00 0.00 3.74
3709 10901 0.249657 GCATCCAGACCCTCGCTTAG 60.250 60.000 0.00 0.00 0.00 2.18
3714 10906 1.519455 GAACGCATCCAGACCCTCG 60.519 63.158 0.00 0.00 0.00 4.63
3727 10919 0.248702 CTCCTAGCCTTCTCGAACGC 60.249 60.000 0.00 0.00 0.00 4.84
3731 10923 2.120312 TCTCTCTCCTAGCCTTCTCGA 58.880 52.381 0.00 0.00 0.00 4.04
3734 10926 2.158325 CCCATCTCTCTCCTAGCCTTCT 60.158 54.545 0.00 0.00 0.00 2.85
3784 10976 2.015736 AACAAATTGTTGCCGCACAA 57.984 40.000 10.91 9.74 39.45 3.33
3785 10977 3.748863 AACAAATTGTTGCCGCACA 57.251 42.105 10.91 0.00 39.45 4.57
3794 10986 1.715785 CTCCACCCCCAACAAATTGT 58.284 50.000 0.00 0.00 33.60 2.71
3797 10989 1.606313 CGCTCCACCCCCAACAAAT 60.606 57.895 0.00 0.00 0.00 2.32
3823 11015 4.742201 CGCCCACTCCCGTCACAG 62.742 72.222 0.00 0.00 0.00 3.66
3853 11047 6.489361 GCATCATAGGATCTTTGGAAATGACT 59.511 38.462 0.00 0.00 32.46 3.41
3854 11048 6.263842 TGCATCATAGGATCTTTGGAAATGAC 59.736 38.462 0.00 0.00 32.46 3.06
3855 11049 6.367161 TGCATCATAGGATCTTTGGAAATGA 58.633 36.000 0.00 0.00 34.30 2.57
3856 11050 6.644248 TGCATCATAGGATCTTTGGAAATG 57.356 37.500 0.00 0.00 0.00 2.32
3857 11051 6.837568 AGTTGCATCATAGGATCTTTGGAAAT 59.162 34.615 0.00 0.00 0.00 2.17
3858 11052 6.095860 CAGTTGCATCATAGGATCTTTGGAAA 59.904 38.462 0.00 0.00 0.00 3.13
3859 11053 5.591472 CAGTTGCATCATAGGATCTTTGGAA 59.409 40.000 0.00 0.00 0.00 3.53
3860 11054 5.128205 CAGTTGCATCATAGGATCTTTGGA 58.872 41.667 0.00 0.00 0.00 3.53
3861 11055 4.261489 GCAGTTGCATCATAGGATCTTTGG 60.261 45.833 0.00 0.00 41.59 3.28
3862 11056 4.261489 GGCAGTTGCATCATAGGATCTTTG 60.261 45.833 6.43 0.00 44.36 2.77
3863 11057 3.887716 GGCAGTTGCATCATAGGATCTTT 59.112 43.478 6.43 0.00 44.36 2.52
3864 11058 3.137913 AGGCAGTTGCATCATAGGATCTT 59.862 43.478 6.43 0.00 44.36 2.40
3865 11059 2.709934 AGGCAGTTGCATCATAGGATCT 59.290 45.455 6.43 0.00 44.36 2.75
3866 11060 3.137446 AGGCAGTTGCATCATAGGATC 57.863 47.619 6.43 0.00 44.36 3.36
3875 11069 2.799017 TCATTCTTGAGGCAGTTGCAT 58.201 42.857 6.43 0.00 44.36 3.96
3876 11070 2.275134 TCATTCTTGAGGCAGTTGCA 57.725 45.000 6.43 0.00 44.36 4.08
3877 11071 2.098770 GGATCATTCTTGAGGCAGTTGC 59.901 50.000 0.00 0.00 34.73 4.17
3878 11072 3.618351 AGGATCATTCTTGAGGCAGTTG 58.382 45.455 0.00 0.00 34.73 3.16
3879 11073 4.015084 CAAGGATCATTCTTGAGGCAGTT 58.985 43.478 0.00 0.00 42.94 3.16
3880 11074 3.618351 CAAGGATCATTCTTGAGGCAGT 58.382 45.455 0.00 0.00 42.94 4.40
3881 11075 2.950309 CCAAGGATCATTCTTGAGGCAG 59.050 50.000 7.32 0.00 42.94 4.85
3882 11076 2.577563 TCCAAGGATCATTCTTGAGGCA 59.422 45.455 7.32 0.00 42.94 4.75
3883 11077 3.287867 TCCAAGGATCATTCTTGAGGC 57.712 47.619 7.32 0.00 42.94 4.70
3895 11089 1.683943 CACCGCAATGATCCAAGGAT 58.316 50.000 0.16 0.16 37.59 3.24
3896 11090 0.394216 CCACCGCAATGATCCAAGGA 60.394 55.000 0.00 0.00 0.00 3.36
3897 11091 2.008268 GCCACCGCAATGATCCAAGG 62.008 60.000 0.00 0.00 34.03 3.61
3898 11092 1.434696 GCCACCGCAATGATCCAAG 59.565 57.895 0.00 0.00 34.03 3.61
3899 11093 2.051518 GGCCACCGCAATGATCCAA 61.052 57.895 0.00 0.00 36.38 3.53
3900 11094 2.440065 GGCCACCGCAATGATCCA 60.440 61.111 0.00 0.00 36.38 3.41
3901 11095 1.322538 AAAGGCCACCGCAATGATCC 61.323 55.000 5.01 0.00 36.38 3.36
3902 11096 0.179129 CAAAGGCCACCGCAATGATC 60.179 55.000 5.01 0.00 36.38 2.92
3903 11097 0.899717 ACAAAGGCCACCGCAATGAT 60.900 50.000 5.01 0.00 36.38 2.45
3904 11098 1.530419 ACAAAGGCCACCGCAATGA 60.530 52.632 5.01 0.00 36.38 2.57
3905 11099 3.050339 ACAAAGGCCACCGCAATG 58.950 55.556 5.01 0.00 36.38 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.