Multiple sequence alignment - TraesCS2D01G085400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G085400 chr2D 100.000 4352 0 0 1 4352 36909837 36914188 0.000000e+00 8037.0
1 TraesCS2D01G085400 chr2D 89.189 3256 291 33 1137 4352 36885987 36889221 0.000000e+00 4006.0
2 TraesCS2D01G085400 chr2D 89.170 277 24 3 550 826 36904758 36905028 1.500000e-89 340.0
3 TraesCS2D01G085400 chr2D 84.848 66 10 0 420 485 323571294 323571229 2.810000e-07 67.6
4 TraesCS2D01G085400 chr2B 91.983 3630 213 38 629 4205 63865722 63862118 0.000000e+00 5020.0
5 TraesCS2D01G085400 chr2B 86.792 2718 305 27 1120 3805 64190902 64193597 0.000000e+00 2981.0
6 TraesCS2D01G085400 chr2B 82.800 2593 314 68 927 3438 64091844 64089303 0.000000e+00 2196.0
7 TraesCS2D01G085400 chr2B 87.652 494 48 6 3474 3962 64089305 64088820 2.940000e-156 562.0
8 TraesCS2D01G085400 chr2B 85.609 542 43 8 314 826 64064230 64063695 1.780000e-148 536.0
9 TraesCS2D01G085400 chr2B 90.821 207 17 2 4148 4352 63862135 63861929 4.290000e-70 276.0
10 TraesCS2D01G085400 chr2B 79.452 438 52 17 3948 4352 64088753 64088321 4.290000e-70 276.0
11 TraesCS2D01G085400 chr2B 79.231 130 12 9 606 727 64189301 64189423 4.670000e-10 76.8
12 TraesCS2D01G085400 chr2A 93.450 2336 124 16 1132 3445 41620339 41622667 0.000000e+00 3439.0
13 TraesCS2D01G085400 chr2A 93.182 132 2 2 1010 1141 41609932 41610056 2.070000e-43 187.0
14 TraesCS2D01G085400 chr2A 86.364 66 8 1 3957 4021 365907955 365908020 2.170000e-08 71.3
15 TraesCS2D01G085400 chr6A 87.833 526 44 11 3437 3944 555858248 555857725 2.240000e-167 599.0
16 TraesCS2D01G085400 chr4B 85.806 155 20 2 326 479 581959210 581959057 3.480000e-36 163.0
17 TraesCS2D01G085400 chr4B 80.916 131 22 3 343 471 581959021 581958892 2.770000e-17 100.0
18 TraesCS2D01G085400 chr4D 84.354 147 18 4 342 485 465163553 465163409 5.870000e-29 139.0
19 TraesCS2D01G085400 chr4A 86.154 130 15 3 341 468 5191299 5191427 2.110000e-28 137.0
20 TraesCS2D01G085400 chr7D 100.000 28 0 0 546 573 89759333 89759360 8.000000e-03 52.8
21 TraesCS2D01G085400 chr5A 100.000 28 0 0 546 573 480818533 480818506 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G085400 chr2D 36909837 36914188 4351 False 8037.000000 8037 100.000000 1 4352 1 chr2D.!!$F3 4351
1 TraesCS2D01G085400 chr2D 36885987 36889221 3234 False 4006.000000 4006 89.189000 1137 4352 1 chr2D.!!$F1 3215
2 TraesCS2D01G085400 chr2B 63861929 63865722 3793 True 2648.000000 5020 91.402000 629 4352 2 chr2B.!!$R2 3723
3 TraesCS2D01G085400 chr2B 64189301 64193597 4296 False 1528.900000 2981 83.011500 606 3805 2 chr2B.!!$F1 3199
4 TraesCS2D01G085400 chr2B 64088321 64091844 3523 True 1011.333333 2196 83.301333 927 4352 3 chr2B.!!$R3 3425
5 TraesCS2D01G085400 chr2B 64063695 64064230 535 True 536.000000 536 85.609000 314 826 1 chr2B.!!$R1 512
6 TraesCS2D01G085400 chr2A 41620339 41622667 2328 False 3439.000000 3439 93.450000 1132 3445 1 chr2A.!!$F2 2313
7 TraesCS2D01G085400 chr6A 555857725 555858248 523 True 599.000000 599 87.833000 3437 3944 1 chr6A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.029567 GTCTAGACCACATCGCCGAG 59.970 60.0 12.13 0.00 0.00 4.63 F
106 107 0.036010 AGTCATGCTAGCCTGCGTTT 60.036 50.0 13.29 0.00 35.36 3.60 F
108 109 0.036483 TCATGCTAGCCTGCGTTTGA 60.036 50.0 13.29 1.37 35.36 2.69 F
116 117 0.040425 GCCTGCGTTTGAAATGTCGT 60.040 50.0 0.00 0.00 0.00 4.34 F
1336 2497 0.108585 AGGCTGCCAGAAAGTCGAAA 59.891 50.0 22.65 0.00 0.00 3.46 F
2637 3832 0.178973 TGAGGTCGGTGGAAGTCTCA 60.179 55.0 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 2697 0.251354 ACATCACGATGAGGCAAGCT 59.749 50.000 13.83 0.0 41.20 3.74 R
1753 2914 1.066858 CACGTAAGGAGGCACATGACT 60.067 52.381 0.00 0.0 46.39 3.41 R
1776 2937 2.022240 GCTCCTTGCTCTCCCCTACG 62.022 65.000 0.00 0.0 38.95 3.51 R
2112 3288 1.134128 TCACTTGCAAACCAGAGCTCA 60.134 47.619 17.77 0.0 0.00 4.26 R
2841 4042 0.736325 ATGCCGTGTGCGAGTACTTC 60.736 55.000 0.00 0.0 45.60 3.01 R
3561 4800 3.086282 TCCCGACAAAATTTTAGGCCTC 58.914 45.455 9.68 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.897846 CGGAACACACCGCACCAA 60.898 61.111 0.00 0.00 46.20 3.67
18 19 2.473760 CGGAACACACCGCACCAAA 61.474 57.895 0.00 0.00 46.20 3.28
19 20 1.358759 GGAACACACCGCACCAAAG 59.641 57.895 0.00 0.00 0.00 2.77
20 21 1.299089 GAACACACCGCACCAAAGC 60.299 57.895 0.00 0.00 0.00 3.51
21 22 2.677573 GAACACACCGCACCAAAGCC 62.678 60.000 0.00 0.00 0.00 4.35
22 23 3.215568 CACACCGCACCAAAGCCA 61.216 61.111 0.00 0.00 0.00 4.75
23 24 3.216292 ACACCGCACCAAAGCCAC 61.216 61.111 0.00 0.00 0.00 5.01
24 25 3.977244 CACCGCACCAAAGCCACC 61.977 66.667 0.00 0.00 0.00 4.61
25 26 4.204028 ACCGCACCAAAGCCACCT 62.204 61.111 0.00 0.00 0.00 4.00
26 27 3.365265 CCGCACCAAAGCCACCTC 61.365 66.667 0.00 0.00 0.00 3.85
27 28 3.726517 CGCACCAAAGCCACCTCG 61.727 66.667 0.00 0.00 0.00 4.63
28 29 2.594592 GCACCAAAGCCACCTCGT 60.595 61.111 0.00 0.00 0.00 4.18
29 30 2.617274 GCACCAAAGCCACCTCGTC 61.617 63.158 0.00 0.00 0.00 4.20
30 31 1.071471 CACCAAAGCCACCTCGTCT 59.929 57.895 0.00 0.00 0.00 4.18
31 32 0.951040 CACCAAAGCCACCTCGTCTC 60.951 60.000 0.00 0.00 0.00 3.36
32 33 1.371183 CCAAAGCCACCTCGTCTCA 59.629 57.895 0.00 0.00 0.00 3.27
33 34 0.951040 CCAAAGCCACCTCGTCTCAC 60.951 60.000 0.00 0.00 0.00 3.51
34 35 0.249868 CAAAGCCACCTCGTCTCACA 60.250 55.000 0.00 0.00 0.00 3.58
35 36 0.687354 AAAGCCACCTCGTCTCACAT 59.313 50.000 0.00 0.00 0.00 3.21
36 37 0.687354 AAGCCACCTCGTCTCACATT 59.313 50.000 0.00 0.00 0.00 2.71
37 38 0.247736 AGCCACCTCGTCTCACATTC 59.752 55.000 0.00 0.00 0.00 2.67
38 39 1.078759 GCCACCTCGTCTCACATTCG 61.079 60.000 0.00 0.00 0.00 3.34
39 40 0.243907 CCACCTCGTCTCACATTCGT 59.756 55.000 0.00 0.00 0.00 3.85
40 41 1.336887 CCACCTCGTCTCACATTCGTT 60.337 52.381 0.00 0.00 0.00 3.85
41 42 1.721389 CACCTCGTCTCACATTCGTTG 59.279 52.381 0.00 0.00 0.00 4.10
42 43 1.340248 ACCTCGTCTCACATTCGTTGT 59.660 47.619 0.00 0.00 39.91 3.32
52 53 2.151202 ACATTCGTTGTGGTGACATCC 58.849 47.619 0.00 0.00 46.14 3.51
53 54 2.150390 CATTCGTTGTGGTGACATCCA 58.850 47.619 0.00 0.00 46.14 3.41
54 55 2.559698 TTCGTTGTGGTGACATCCAT 57.440 45.000 0.94 0.00 46.14 3.41
55 56 1.807139 TCGTTGTGGTGACATCCATG 58.193 50.000 0.94 0.00 46.14 3.66
56 57 1.071542 TCGTTGTGGTGACATCCATGT 59.928 47.619 0.00 0.00 46.14 3.21
57 58 1.197492 CGTTGTGGTGACATCCATGTG 59.803 52.381 0.00 0.00 46.14 3.21
58 59 1.068333 GTTGTGGTGACATCCATGTGC 60.068 52.381 0.00 0.00 46.14 4.57
59 60 0.401356 TGTGGTGACATCCATGTGCT 59.599 50.000 0.00 0.00 46.14 4.40
60 61 1.627834 TGTGGTGACATCCATGTGCTA 59.372 47.619 0.00 0.00 46.14 3.49
61 62 2.039613 TGTGGTGACATCCATGTGCTAA 59.960 45.455 0.00 0.00 46.14 3.09
62 63 3.282021 GTGGTGACATCCATGTGCTAAT 58.718 45.455 0.00 0.00 46.14 1.73
63 64 3.313526 GTGGTGACATCCATGTGCTAATC 59.686 47.826 0.00 0.00 46.14 1.75
64 65 3.200605 TGGTGACATCCATGTGCTAATCT 59.799 43.478 0.00 0.00 41.95 2.40
65 66 3.562973 GGTGACATCCATGTGCTAATCTG 59.437 47.826 0.00 0.00 41.95 2.90
66 67 4.194640 GTGACATCCATGTGCTAATCTGT 58.805 43.478 0.00 0.00 41.95 3.41
67 68 4.272018 GTGACATCCATGTGCTAATCTGTC 59.728 45.833 0.00 0.00 41.95 3.51
68 69 4.162888 TGACATCCATGTGCTAATCTGTCT 59.837 41.667 0.00 0.00 41.95 3.41
69 70 5.363580 TGACATCCATGTGCTAATCTGTCTA 59.636 40.000 0.00 0.00 41.95 2.59
70 71 5.851720 ACATCCATGTGCTAATCTGTCTAG 58.148 41.667 0.00 0.00 40.03 2.43
71 72 5.600069 ACATCCATGTGCTAATCTGTCTAGA 59.400 40.000 0.00 0.00 40.03 2.43
72 73 5.521906 TCCATGTGCTAATCTGTCTAGAC 57.478 43.478 16.32 16.32 35.34 2.59
73 74 4.342378 TCCATGTGCTAATCTGTCTAGACC 59.658 45.833 20.11 3.40 35.34 3.85
74 75 4.100035 CCATGTGCTAATCTGTCTAGACCA 59.900 45.833 20.11 7.24 35.34 4.02
75 76 4.720649 TGTGCTAATCTGTCTAGACCAC 57.279 45.455 20.11 17.26 35.34 4.16
76 77 4.086457 TGTGCTAATCTGTCTAGACCACA 58.914 43.478 20.11 19.37 35.34 4.17
77 78 4.711846 TGTGCTAATCTGTCTAGACCACAT 59.288 41.667 20.11 6.47 35.34 3.21
78 79 5.163509 TGTGCTAATCTGTCTAGACCACATC 60.164 44.000 20.11 4.42 35.34 3.06
79 80 4.036852 TGCTAATCTGTCTAGACCACATCG 59.963 45.833 20.11 6.22 35.34 3.84
80 81 3.444703 AATCTGTCTAGACCACATCGC 57.555 47.619 20.11 0.00 35.34 4.58
81 82 1.103803 TCTGTCTAGACCACATCGCC 58.896 55.000 20.11 0.00 0.00 5.54
82 83 0.248661 CTGTCTAGACCACATCGCCG 60.249 60.000 20.11 0.00 0.00 6.46
83 84 0.678684 TGTCTAGACCACATCGCCGA 60.679 55.000 20.11 0.00 0.00 5.54
84 85 0.029567 GTCTAGACCACATCGCCGAG 59.970 60.000 12.13 0.00 0.00 4.63
85 86 0.393944 TCTAGACCACATCGCCGAGT 60.394 55.000 0.00 0.00 0.00 4.18
86 87 0.248661 CTAGACCACATCGCCGAGTG 60.249 60.000 8.95 8.95 35.56 3.51
87 88 0.678684 TAGACCACATCGCCGAGTGA 60.679 55.000 15.18 0.00 37.97 3.41
88 89 1.517257 GACCACATCGCCGAGTGAG 60.517 63.158 15.18 9.49 37.97 3.51
89 90 2.214181 GACCACATCGCCGAGTGAGT 62.214 60.000 15.18 11.77 37.97 3.41
90 91 1.517257 CCACATCGCCGAGTGAGTC 60.517 63.158 15.18 0.00 37.97 3.36
91 92 1.212751 CACATCGCCGAGTGAGTCA 59.787 57.895 9.99 0.00 37.97 3.41
92 93 0.179127 CACATCGCCGAGTGAGTCAT 60.179 55.000 9.99 0.00 37.97 3.06
93 94 0.179127 ACATCGCCGAGTGAGTCATG 60.179 55.000 0.00 0.00 0.00 3.07
94 95 1.227089 ATCGCCGAGTGAGTCATGC 60.227 57.895 0.00 0.00 0.00 4.06
95 96 1.670949 ATCGCCGAGTGAGTCATGCT 61.671 55.000 0.00 0.00 0.00 3.79
96 97 1.029947 TCGCCGAGTGAGTCATGCTA 61.030 55.000 0.00 0.00 0.00 3.49
97 98 0.593518 CGCCGAGTGAGTCATGCTAG 60.594 60.000 0.00 0.00 0.00 3.42
98 99 0.873743 GCCGAGTGAGTCATGCTAGC 60.874 60.000 8.10 8.10 0.00 3.42
99 100 0.249238 CCGAGTGAGTCATGCTAGCC 60.249 60.000 13.29 0.00 0.00 3.93
100 101 0.743688 CGAGTGAGTCATGCTAGCCT 59.256 55.000 13.29 0.86 0.00 4.58
101 102 1.535649 CGAGTGAGTCATGCTAGCCTG 60.536 57.143 13.29 13.30 0.00 4.85
102 103 0.177604 AGTGAGTCATGCTAGCCTGC 59.822 55.000 13.29 9.03 0.00 4.85
103 104 1.142531 TGAGTCATGCTAGCCTGCG 59.857 57.895 13.29 0.00 35.36 5.18
104 105 1.142748 GAGTCATGCTAGCCTGCGT 59.857 57.895 13.29 2.95 35.36 5.24
105 106 0.460987 GAGTCATGCTAGCCTGCGTT 60.461 55.000 13.29 1.53 35.36 4.84
106 107 0.036010 AGTCATGCTAGCCTGCGTTT 60.036 50.000 13.29 0.00 35.36 3.60
107 108 0.097674 GTCATGCTAGCCTGCGTTTG 59.902 55.000 13.29 0.00 35.36 2.93
108 109 0.036483 TCATGCTAGCCTGCGTTTGA 60.036 50.000 13.29 1.37 35.36 2.69
109 110 0.804364 CATGCTAGCCTGCGTTTGAA 59.196 50.000 13.29 0.00 35.36 2.69
110 111 1.199789 CATGCTAGCCTGCGTTTGAAA 59.800 47.619 13.29 0.00 35.36 2.69
111 112 1.533625 TGCTAGCCTGCGTTTGAAAT 58.466 45.000 13.29 0.00 35.36 2.17
112 113 1.199789 TGCTAGCCTGCGTTTGAAATG 59.800 47.619 13.29 0.00 35.36 2.32
113 114 1.200020 GCTAGCCTGCGTTTGAAATGT 59.800 47.619 2.29 0.00 0.00 2.71
114 115 2.729156 GCTAGCCTGCGTTTGAAATGTC 60.729 50.000 2.29 0.00 0.00 3.06
115 116 0.238289 AGCCTGCGTTTGAAATGTCG 59.762 50.000 0.00 0.00 0.00 4.35
116 117 0.040425 GCCTGCGTTTGAAATGTCGT 60.040 50.000 0.00 0.00 0.00 4.34
117 118 1.950472 CCTGCGTTTGAAATGTCGTC 58.050 50.000 0.00 0.00 0.00 4.20
118 119 1.531149 CCTGCGTTTGAAATGTCGTCT 59.469 47.619 0.00 0.00 0.00 4.18
119 120 2.411547 CCTGCGTTTGAAATGTCGTCTC 60.412 50.000 0.00 0.00 0.00 3.36
120 121 2.476619 CTGCGTTTGAAATGTCGTCTCT 59.523 45.455 0.00 0.00 0.00 3.10
121 122 2.220824 TGCGTTTGAAATGTCGTCTCTG 59.779 45.455 0.00 0.00 0.00 3.35
122 123 2.221055 GCGTTTGAAATGTCGTCTCTGT 59.779 45.455 0.00 0.00 0.00 3.41
123 124 3.787826 CGTTTGAAATGTCGTCTCTGTG 58.212 45.455 0.00 0.00 0.00 3.66
124 125 3.489416 CGTTTGAAATGTCGTCTCTGTGA 59.511 43.478 0.00 0.00 0.00 3.58
125 126 4.606232 CGTTTGAAATGTCGTCTCTGTGAC 60.606 45.833 0.00 0.00 42.06 3.67
126 127 3.026630 TGAAATGTCGTCTCTGTGACC 57.973 47.619 4.45 0.00 42.49 4.02
127 128 2.364002 TGAAATGTCGTCTCTGTGACCA 59.636 45.455 4.45 0.00 42.49 4.02
128 129 3.006859 TGAAATGTCGTCTCTGTGACCAT 59.993 43.478 4.45 1.12 42.49 3.55
129 130 2.949451 ATGTCGTCTCTGTGACCATC 57.051 50.000 4.45 0.00 42.49 3.51
130 131 1.911057 TGTCGTCTCTGTGACCATCT 58.089 50.000 4.45 0.00 42.49 2.90
131 132 1.813178 TGTCGTCTCTGTGACCATCTC 59.187 52.381 4.45 0.00 42.49 2.75
132 133 2.088423 GTCGTCTCTGTGACCATCTCT 58.912 52.381 4.45 0.00 42.49 3.10
133 134 3.271729 GTCGTCTCTGTGACCATCTCTA 58.728 50.000 4.45 0.00 42.49 2.43
134 135 3.690139 GTCGTCTCTGTGACCATCTCTAA 59.310 47.826 4.45 0.00 42.49 2.10
135 136 4.336993 GTCGTCTCTGTGACCATCTCTAAT 59.663 45.833 4.45 0.00 42.49 1.73
136 137 5.527951 GTCGTCTCTGTGACCATCTCTAATA 59.472 44.000 4.45 0.00 42.49 0.98
137 138 6.205853 GTCGTCTCTGTGACCATCTCTAATAT 59.794 42.308 4.45 0.00 42.49 1.28
138 139 6.428465 TCGTCTCTGTGACCATCTCTAATATC 59.572 42.308 4.45 0.00 42.49 1.63
139 140 6.205658 CGTCTCTGTGACCATCTCTAATATCA 59.794 42.308 4.45 0.00 42.49 2.15
140 141 7.367285 GTCTCTGTGACCATCTCTAATATCAC 58.633 42.308 0.00 0.00 39.69 3.06
141 142 6.491745 TCTCTGTGACCATCTCTAATATCACC 59.508 42.308 0.00 0.00 36.47 4.02
142 143 6.377080 TCTGTGACCATCTCTAATATCACCT 58.623 40.000 0.00 0.00 36.47 4.00
143 144 6.266330 TCTGTGACCATCTCTAATATCACCTG 59.734 42.308 0.00 0.00 36.47 4.00
144 145 5.305386 TGTGACCATCTCTAATATCACCTGG 59.695 44.000 0.00 0.00 36.47 4.45
145 146 5.540337 GTGACCATCTCTAATATCACCTGGA 59.460 44.000 0.00 0.00 32.18 3.86
146 147 6.212388 GTGACCATCTCTAATATCACCTGGAT 59.788 42.308 0.00 0.00 40.14 3.41
147 148 6.789457 TGACCATCTCTAATATCACCTGGATT 59.211 38.462 0.00 0.00 37.44 3.01
148 149 7.293299 TGACCATCTCTAATATCACCTGGATTT 59.707 37.037 0.00 0.00 37.44 2.17
149 150 8.050316 ACCATCTCTAATATCACCTGGATTTT 57.950 34.615 0.00 0.00 37.44 1.82
150 151 7.941238 ACCATCTCTAATATCACCTGGATTTTG 59.059 37.037 0.00 0.00 37.44 2.44
151 152 8.159447 CCATCTCTAATATCACCTGGATTTTGA 58.841 37.037 0.00 0.00 37.44 2.69
152 153 9.217278 CATCTCTAATATCACCTGGATTTTGAG 57.783 37.037 0.00 2.22 37.44 3.02
153 154 7.220030 TCTCTAATATCACCTGGATTTTGAGC 58.780 38.462 0.00 0.00 37.44 4.26
154 155 6.299141 TCTAATATCACCTGGATTTTGAGCC 58.701 40.000 0.00 0.00 37.44 4.70
155 156 4.803329 ATATCACCTGGATTTTGAGCCT 57.197 40.909 0.00 0.00 37.44 4.58
156 157 2.496899 TCACCTGGATTTTGAGCCTC 57.503 50.000 0.00 0.00 0.00 4.70
157 158 1.988107 TCACCTGGATTTTGAGCCTCT 59.012 47.619 0.00 0.00 0.00 3.69
158 159 2.026822 TCACCTGGATTTTGAGCCTCTC 60.027 50.000 0.00 0.00 0.00 3.20
159 160 1.065854 ACCTGGATTTTGAGCCTCTCG 60.066 52.381 0.00 0.00 32.35 4.04
160 161 1.012841 CTGGATTTTGAGCCTCTCGC 58.987 55.000 0.00 0.00 32.35 5.03
161 162 0.740868 TGGATTTTGAGCCTCTCGCG 60.741 55.000 0.00 0.00 44.76 5.87
162 163 1.349973 GATTTTGAGCCTCTCGCGC 59.650 57.895 0.00 0.00 44.76 6.86
163 164 1.361668 GATTTTGAGCCTCTCGCGCA 61.362 55.000 8.75 0.00 46.42 6.09
166 167 2.202797 TGAGCCTCTCGCGCATTC 60.203 61.111 8.75 0.00 42.92 2.67
167 168 2.105930 GAGCCTCTCGCGCATTCT 59.894 61.111 8.75 0.00 44.76 2.40
168 169 1.520342 GAGCCTCTCGCGCATTCTT 60.520 57.895 8.75 0.00 44.76 2.52
169 170 1.078848 AGCCTCTCGCGCATTCTTT 60.079 52.632 8.75 0.00 44.76 2.52
170 171 1.086634 AGCCTCTCGCGCATTCTTTC 61.087 55.000 8.75 0.00 44.76 2.62
171 172 2.009888 CCTCTCGCGCATTCTTTCC 58.990 57.895 8.75 0.00 0.00 3.13
172 173 0.740868 CCTCTCGCGCATTCTTTCCA 60.741 55.000 8.75 0.00 0.00 3.53
173 174 1.078709 CTCTCGCGCATTCTTTCCAA 58.921 50.000 8.75 0.00 0.00 3.53
174 175 0.796312 TCTCGCGCATTCTTTCCAAC 59.204 50.000 8.75 0.00 0.00 3.77
175 176 0.179189 CTCGCGCATTCTTTCCAACC 60.179 55.000 8.75 0.00 0.00 3.77
176 177 0.886938 TCGCGCATTCTTTCCAACCA 60.887 50.000 8.75 0.00 0.00 3.67
177 178 0.171007 CGCGCATTCTTTCCAACCAT 59.829 50.000 8.75 0.00 0.00 3.55
178 179 1.402720 CGCGCATTCTTTCCAACCATT 60.403 47.619 8.75 0.00 0.00 3.16
179 180 1.994779 GCGCATTCTTTCCAACCATTG 59.005 47.619 0.30 0.00 0.00 2.82
180 181 1.994779 CGCATTCTTTCCAACCATTGC 59.005 47.619 0.00 0.00 0.00 3.56
181 182 2.349590 GCATTCTTTCCAACCATTGCC 58.650 47.619 0.00 0.00 0.00 4.52
182 183 2.936553 GCATTCTTTCCAACCATTGCCC 60.937 50.000 0.00 0.00 0.00 5.36
183 184 2.397044 TTCTTTCCAACCATTGCCCT 57.603 45.000 0.00 0.00 0.00 5.19
184 185 3.534357 TTCTTTCCAACCATTGCCCTA 57.466 42.857 0.00 0.00 0.00 3.53
185 186 3.085952 TCTTTCCAACCATTGCCCTAG 57.914 47.619 0.00 0.00 0.00 3.02
186 187 1.478105 CTTTCCAACCATTGCCCTAGC 59.522 52.381 0.00 0.00 40.48 3.42
197 198 3.717294 CCCTAGCACGGCAACCCT 61.717 66.667 0.00 0.00 0.00 4.34
198 199 2.363975 CCCTAGCACGGCAACCCTA 61.364 63.158 0.00 0.00 0.00 3.53
199 200 1.144057 CCTAGCACGGCAACCCTAG 59.856 63.158 0.00 0.00 0.00 3.02
200 201 1.327690 CCTAGCACGGCAACCCTAGA 61.328 60.000 0.00 0.00 31.50 2.43
201 202 0.753262 CTAGCACGGCAACCCTAGAT 59.247 55.000 0.00 0.00 31.50 1.98
202 203 0.750850 TAGCACGGCAACCCTAGATC 59.249 55.000 0.00 0.00 0.00 2.75
203 204 1.883084 GCACGGCAACCCTAGATCG 60.883 63.158 0.00 0.00 0.00 3.69
204 205 1.813859 CACGGCAACCCTAGATCGA 59.186 57.895 0.00 0.00 0.00 3.59
205 206 0.174845 CACGGCAACCCTAGATCGAA 59.825 55.000 0.00 0.00 0.00 3.71
206 207 0.460311 ACGGCAACCCTAGATCGAAG 59.540 55.000 0.00 0.00 0.00 3.79
207 208 0.876342 CGGCAACCCTAGATCGAAGC 60.876 60.000 0.00 0.00 0.00 3.86
208 209 0.178068 GGCAACCCTAGATCGAAGCA 59.822 55.000 0.00 0.00 0.00 3.91
209 210 1.291132 GCAACCCTAGATCGAAGCAC 58.709 55.000 0.00 0.00 0.00 4.40
210 211 1.405526 GCAACCCTAGATCGAAGCACA 60.406 52.381 0.00 0.00 0.00 4.57
211 212 2.935238 GCAACCCTAGATCGAAGCACAA 60.935 50.000 0.00 0.00 0.00 3.33
212 213 3.334691 CAACCCTAGATCGAAGCACAAA 58.665 45.455 0.00 0.00 0.00 2.83
213 214 3.252974 ACCCTAGATCGAAGCACAAAG 57.747 47.619 0.00 0.00 0.00 2.77
214 215 2.567615 ACCCTAGATCGAAGCACAAAGT 59.432 45.455 0.00 0.00 0.00 2.66
215 216 3.190874 CCCTAGATCGAAGCACAAAGTC 58.809 50.000 0.00 0.00 0.00 3.01
216 217 3.190874 CCTAGATCGAAGCACAAAGTCC 58.809 50.000 0.00 0.00 0.00 3.85
217 218 1.714794 AGATCGAAGCACAAAGTCCG 58.285 50.000 0.00 0.00 0.00 4.79
218 219 1.272490 AGATCGAAGCACAAAGTCCGA 59.728 47.619 0.00 0.00 0.00 4.55
219 220 2.066262 GATCGAAGCACAAAGTCCGAA 58.934 47.619 0.00 0.00 0.00 4.30
220 221 2.163818 TCGAAGCACAAAGTCCGAAT 57.836 45.000 0.00 0.00 0.00 3.34
221 222 2.489971 TCGAAGCACAAAGTCCGAATT 58.510 42.857 0.00 0.00 0.00 2.17
222 223 2.478894 TCGAAGCACAAAGTCCGAATTC 59.521 45.455 0.00 0.00 0.00 2.17
223 224 2.721797 CGAAGCACAAAGTCCGAATTCG 60.722 50.000 20.92 20.92 39.44 3.34
224 225 2.163818 AGCACAAAGTCCGAATTCGA 57.836 45.000 28.76 12.20 43.02 3.71
225 226 1.798813 AGCACAAAGTCCGAATTCGAC 59.201 47.619 28.76 22.00 43.02 4.20
226 227 1.529438 GCACAAAGTCCGAATTCGACA 59.471 47.619 28.76 12.14 43.02 4.35
227 228 2.661979 GCACAAAGTCCGAATTCGACAC 60.662 50.000 28.76 22.25 43.02 3.67
228 229 2.542178 CACAAAGTCCGAATTCGACACA 59.458 45.455 28.76 7.02 43.02 3.72
229 230 2.800544 ACAAAGTCCGAATTCGACACAG 59.199 45.455 28.76 17.96 43.02 3.66
230 231 1.429463 AAGTCCGAATTCGACACAGC 58.571 50.000 28.76 11.29 43.02 4.40
231 232 0.603569 AGTCCGAATTCGACACAGCT 59.396 50.000 28.76 13.16 43.02 4.24
232 233 1.816835 AGTCCGAATTCGACACAGCTA 59.183 47.619 28.76 1.32 43.02 3.32
233 234 2.159366 AGTCCGAATTCGACACAGCTAG 60.159 50.000 28.76 8.87 43.02 3.42
234 235 0.924090 CCGAATTCGACACAGCTAGC 59.076 55.000 28.76 6.62 43.02 3.42
235 236 1.469940 CCGAATTCGACACAGCTAGCT 60.470 52.381 28.76 12.68 43.02 3.32
236 237 1.585668 CGAATTCGACACAGCTAGCTG 59.414 52.381 37.27 37.27 44.91 4.24
249 250 5.462034 CAGCTAGCTGTGTCAATAGTTTC 57.538 43.478 32.46 0.00 39.10 2.78
250 251 5.174395 CAGCTAGCTGTGTCAATAGTTTCT 58.826 41.667 32.46 0.00 39.10 2.52
251 252 6.333416 CAGCTAGCTGTGTCAATAGTTTCTA 58.667 40.000 32.46 0.00 39.10 2.10
252 253 6.254589 CAGCTAGCTGTGTCAATAGTTTCTAC 59.745 42.308 32.46 0.00 39.10 2.59
253 254 5.520649 GCTAGCTGTGTCAATAGTTTCTACC 59.479 44.000 7.70 0.00 0.00 3.18
254 255 4.833390 AGCTGTGTCAATAGTTTCTACCC 58.167 43.478 0.00 0.00 0.00 3.69
255 256 3.939592 GCTGTGTCAATAGTTTCTACCCC 59.060 47.826 0.00 0.00 0.00 4.95
256 257 4.514401 CTGTGTCAATAGTTTCTACCCCC 58.486 47.826 0.00 0.00 0.00 5.40
257 258 3.911260 TGTGTCAATAGTTTCTACCCCCA 59.089 43.478 0.00 0.00 0.00 4.96
258 259 4.259356 GTGTCAATAGTTTCTACCCCCAC 58.741 47.826 0.00 0.00 0.00 4.61
259 260 3.264964 TGTCAATAGTTTCTACCCCCACC 59.735 47.826 0.00 0.00 0.00 4.61
260 261 3.522343 GTCAATAGTTTCTACCCCCACCT 59.478 47.826 0.00 0.00 0.00 4.00
261 262 3.778629 TCAATAGTTTCTACCCCCACCTC 59.221 47.826 0.00 0.00 0.00 3.85
262 263 2.259014 TAGTTTCTACCCCCACCTCC 57.741 55.000 0.00 0.00 0.00 4.30
263 264 0.549413 AGTTTCTACCCCCACCTCCC 60.549 60.000 0.00 0.00 0.00 4.30
264 265 0.843343 GTTTCTACCCCCACCTCCCA 60.843 60.000 0.00 0.00 0.00 4.37
265 266 0.843343 TTTCTACCCCCACCTCCCAC 60.843 60.000 0.00 0.00 0.00 4.61
266 267 3.081409 CTACCCCCACCTCCCACG 61.081 72.222 0.00 0.00 0.00 4.94
267 268 4.726254 TACCCCCACCTCCCACGG 62.726 72.222 0.00 0.00 0.00 4.94
279 280 4.235762 CCACGGCCCCATCGGTAG 62.236 72.222 0.00 0.00 0.00 3.18
280 281 4.910585 CACGGCCCCATCGGTAGC 62.911 72.222 0.00 0.00 0.00 3.58
282 283 2.915659 CGGCCCCATCGGTAGCTA 60.916 66.667 0.00 0.00 0.00 3.32
283 284 2.741747 GGCCCCATCGGTAGCTAC 59.258 66.667 15.88 15.88 0.00 3.58
284 285 2.138179 GGCCCCATCGGTAGCTACA 61.138 63.158 24.75 6.29 0.00 2.74
285 286 1.367840 GCCCCATCGGTAGCTACAG 59.632 63.158 24.75 20.82 0.00 2.74
286 287 1.367840 CCCCATCGGTAGCTACAGC 59.632 63.158 24.75 8.06 42.49 4.40
287 288 1.367840 CCCATCGGTAGCTACAGCC 59.632 63.158 24.75 7.49 43.38 4.85
288 289 1.367840 CCATCGGTAGCTACAGCCC 59.632 63.158 24.75 7.12 43.38 5.19
289 290 1.399744 CCATCGGTAGCTACAGCCCA 61.400 60.000 24.75 6.30 43.38 5.36
290 291 0.249489 CATCGGTAGCTACAGCCCAC 60.249 60.000 24.75 5.90 43.38 4.61
291 292 1.735376 ATCGGTAGCTACAGCCCACG 61.735 60.000 24.75 17.05 43.38 4.94
292 293 2.202892 GGTAGCTACAGCCCACGC 60.203 66.667 24.75 1.59 43.38 5.34
293 294 2.577059 GTAGCTACAGCCCACGCA 59.423 61.111 19.15 0.00 43.38 5.24
294 295 1.810030 GTAGCTACAGCCCACGCAC 60.810 63.158 19.15 0.00 43.38 5.34
295 296 3.014085 TAGCTACAGCCCACGCACC 62.014 63.158 0.00 0.00 43.38 5.01
297 298 4.778143 CTACAGCCCACGCACCCC 62.778 72.222 0.00 0.00 37.52 4.95
303 304 4.096003 CCCACGCACCCCACCTAG 62.096 72.222 0.00 0.00 0.00 3.02
304 305 3.319198 CCACGCACCCCACCTAGT 61.319 66.667 0.00 0.00 0.00 2.57
305 306 2.047274 CACGCACCCCACCTAGTG 60.047 66.667 0.00 0.00 37.05 2.74
306 307 2.203728 ACGCACCCCACCTAGTGA 60.204 61.111 0.00 0.00 35.23 3.41
307 308 2.264794 CGCACCCCACCTAGTGAC 59.735 66.667 0.00 0.00 35.23 3.67
308 309 2.579657 CGCACCCCACCTAGTGACA 61.580 63.158 0.00 0.00 35.23 3.58
309 310 1.003718 GCACCCCACCTAGTGACAC 60.004 63.158 0.00 0.00 35.23 3.67
310 311 1.677552 CACCCCACCTAGTGACACC 59.322 63.158 0.84 0.00 35.23 4.16
311 312 1.125093 CACCCCACCTAGTGACACCA 61.125 60.000 0.84 0.00 35.23 4.17
312 313 1.125711 ACCCCACCTAGTGACACCAC 61.126 60.000 0.84 0.00 43.50 4.16
341 342 4.804139 CACTCCTAAAATGCTACACCTACG 59.196 45.833 0.00 0.00 0.00 3.51
395 396 2.658489 TCTCTCCTAACTAACCACCCCT 59.342 50.000 0.00 0.00 0.00 4.79
398 399 3.078612 TCTCCTAACTAACCACCCCTCTT 59.921 47.826 0.00 0.00 0.00 2.85
405 406 4.663334 ACTAACCACCCCTCTTGAATTTC 58.337 43.478 0.00 0.00 0.00 2.17
407 408 3.833559 ACCACCCCTCTTGAATTTCAT 57.166 42.857 0.00 0.00 0.00 2.57
434 436 2.224548 GCCTACCATCCCACTAACATCC 60.225 54.545 0.00 0.00 0.00 3.51
460 462 8.931385 AATTAACAATTGACACCTCATTATGC 57.069 30.769 13.59 0.00 0.00 3.14
461 463 5.981088 AACAATTGACACCTCATTATGCA 57.019 34.783 13.59 0.00 0.00 3.96
463 465 6.343716 ACAATTGACACCTCATTATGCAAA 57.656 33.333 13.59 0.00 0.00 3.68
480 482 2.765699 GCAAACCCCCAATCATGTATGT 59.234 45.455 0.00 0.00 0.00 2.29
483 485 3.756082 ACCCCCAATCATGTATGTGTT 57.244 42.857 0.00 0.00 0.00 3.32
506 508 2.244695 ACATGTCTGAGGTCAACGGTA 58.755 47.619 0.00 0.00 0.00 4.02
520 522 5.235831 GGTCAACGGTAATGGATTTAGCTAC 59.764 44.000 0.00 0.00 36.38 3.58
542 544 7.758980 GCTACTCCCTTTAAGTTGTACTAAGTC 59.241 40.741 0.00 0.00 0.00 3.01
544 546 8.026396 ACTCCCTTTAAGTTGTACTAAGTCAA 57.974 34.615 0.00 0.00 0.00 3.18
548 578 7.095899 CCCTTTAAGTTGTACTAAGTCAACGAC 60.096 40.741 0.00 0.00 45.56 4.34
563 593 8.731275 AAGTCAACGACAAATAATATGGATCA 57.269 30.769 0.00 0.00 34.60 2.92
564 594 8.370493 AGTCAACGACAAATAATATGGATCAG 57.630 34.615 0.00 0.00 34.60 2.90
571 601 7.875041 CGACAAATAATATGGATCAGAGGAAGT 59.125 37.037 0.00 0.00 0.00 3.01
581 611 5.473846 TGGATCAGAGGAAGTAAGTATAGCG 59.526 44.000 0.00 0.00 0.00 4.26
582 612 5.106078 GGATCAGAGGAAGTAAGTATAGCGG 60.106 48.000 0.00 0.00 0.00 5.52
586 616 4.583907 AGAGGAAGTAAGTATAGCGGGTTC 59.416 45.833 0.00 0.00 0.00 3.62
657 690 5.010719 CCTATGGGTATGACAGTATGACGTT 59.989 44.000 0.00 0.00 39.69 3.99
677 712 5.481472 CGTTTACGTGACAGCAGAATAATC 58.519 41.667 0.00 0.00 34.11 1.75
793 845 3.754188 ATTTCATTGACAGCTTCTCGC 57.246 42.857 0.00 0.00 39.57 5.03
826 1129 4.691860 AGAAATCAAGCATCCAAAGACG 57.308 40.909 0.00 0.00 0.00 4.18
827 1130 4.326826 AGAAATCAAGCATCCAAAGACGA 58.673 39.130 0.00 0.00 0.00 4.20
830 1133 2.844946 TCAAGCATCCAAAGACGACAA 58.155 42.857 0.00 0.00 0.00 3.18
833 1168 2.571212 AGCATCCAAAGACGACAACAA 58.429 42.857 0.00 0.00 0.00 2.83
835 1170 2.290641 GCATCCAAAGACGACAACAACT 59.709 45.455 0.00 0.00 0.00 3.16
837 1172 2.980568 TCCAAAGACGACAACAACTGT 58.019 42.857 0.00 0.00 42.61 3.55
839 1174 2.223249 CCAAAGACGACAACAACTGTGG 60.223 50.000 0.00 0.00 38.84 4.17
849 1184 3.692593 ACAACAACTGTGGTAAGTCAACC 59.307 43.478 0.00 0.00 36.69 3.77
851 1186 3.541632 ACAACTGTGGTAAGTCAACCTG 58.458 45.455 0.00 0.00 40.44 4.00
863 1198 1.199097 GTCAACCTGTACCCGCAAATG 59.801 52.381 0.00 0.00 0.00 2.32
869 1204 3.016736 CCTGTACCCGCAAATGATTTCT 58.983 45.455 0.00 0.00 0.00 2.52
892 1227 1.438651 TTCCCGCTCGAAAATCACAG 58.561 50.000 0.00 0.00 0.00 3.66
893 1228 1.019278 TCCCGCTCGAAAATCACAGC 61.019 55.000 0.00 0.00 0.00 4.40
1030 2159 2.361757 CTCCCAAGCATCAACACACAAA 59.638 45.455 0.00 0.00 0.00 2.83
1066 2198 8.154203 TGATTCCAGTTCAAACATCTTGTACTA 58.846 33.333 0.00 0.00 30.57 1.82
1067 2199 7.724305 TTCCAGTTCAAACATCTTGTACTAC 57.276 36.000 0.00 0.00 30.57 2.73
1068 2200 7.062749 TCCAGTTCAAACATCTTGTACTACT 57.937 36.000 0.00 0.00 30.57 2.57
1276 2437 2.202932 CGGCTATCAGCGCCTTGT 60.203 61.111 2.29 0.00 45.37 3.16
1335 2496 0.603707 CAGGCTGCCAGAAAGTCGAA 60.604 55.000 22.65 0.00 0.00 3.71
1336 2497 0.108585 AGGCTGCCAGAAAGTCGAAA 59.891 50.000 22.65 0.00 0.00 3.46
1536 2697 1.754803 CTCTTCATGTACGCCTGGGTA 59.245 52.381 0.00 0.00 0.00 3.69
1652 2813 2.031163 GGTGCTCAAGCTGGTCGT 59.969 61.111 3.32 0.00 42.66 4.34
1707 2868 3.591254 GAACGCCCGGCTTGTCTCT 62.591 63.158 8.05 0.00 0.00 3.10
1719 2880 1.209019 CTTGTCTCTGGCTACATGGCT 59.791 52.381 0.00 0.00 42.34 4.75
1776 2937 0.249398 ATGTGCCTCCTTACGTGGTC 59.751 55.000 0.00 0.00 0.00 4.02
1903 3079 4.408821 GGCTGTCCGACCATGGCA 62.409 66.667 13.04 0.00 0.00 4.92
1979 3155 1.601166 TTCAAGAGTCTCCGTCGTCA 58.399 50.000 0.00 0.00 0.00 4.35
2256 3433 5.710099 GGGAGTGGTTTATCATGACAAAAGA 59.290 40.000 0.00 0.00 0.00 2.52
2276 3453 0.808755 GTAATTGCCTTCACACCCGG 59.191 55.000 0.00 0.00 0.00 5.73
2529 3715 0.934496 CGAAGCGTTGGAGTGACAAA 59.066 50.000 0.00 0.00 31.17 2.83
2637 3832 0.178973 TGAGGTCGGTGGAAGTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
2822 4023 3.869272 CCTCGCTTGCCACATCGC 61.869 66.667 0.00 0.00 0.00 4.58
2824 4025 4.393155 TCGCTTGCCACATCGCCT 62.393 61.111 0.00 0.00 0.00 5.52
2826 4027 3.512516 GCTTGCCACATCGCCTCC 61.513 66.667 0.00 0.00 0.00 4.30
2841 4042 0.388659 CCTCCAGGCTCTTCGAGATG 59.611 60.000 0.00 0.00 0.00 2.90
2904 4105 1.748879 GACAGCCGCCTGCCATTTA 60.749 57.895 0.00 0.00 43.02 1.40
2913 4114 3.055094 CCGCCTGCCATTTATCCTACTAT 60.055 47.826 0.00 0.00 0.00 2.12
2926 4127 1.129326 CTACTATTGCGCGTACCTGC 58.871 55.000 8.43 0.00 0.00 4.85
3286 4490 2.255881 TTCGTCACGCTCGTCTGGA 61.256 57.895 0.00 0.00 0.00 3.86
3465 4691 9.783256 GTTAATTAGTTGCGGAAGTAAATCAAT 57.217 29.630 19.05 2.75 37.47 2.57
3466 4692 9.781834 TTAATTAGTTGCGGAAGTAAATCAATG 57.218 29.630 19.05 0.00 37.47 2.82
3470 4696 5.122396 AGTTGCGGAAGTAAATCAATGTCTC 59.878 40.000 0.00 0.00 37.47 3.36
3584 4824 3.086282 GGCCTAAAATTTTGTCGGGAGA 58.914 45.455 13.76 0.00 0.00 3.71
4091 5431 7.207383 TCCTATGAATCGAACGACAAATGTAT 58.793 34.615 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.358759 CTTTGGTGCGGTGTGTTCC 59.641 57.895 0.00 0.00 0.00 3.62
2 3 1.299089 GCTTTGGTGCGGTGTGTTC 60.299 57.895 0.00 0.00 0.00 3.18
3 4 2.781158 GGCTTTGGTGCGGTGTGTT 61.781 57.895 0.00 0.00 0.00 3.32
4 5 3.216292 GGCTTTGGTGCGGTGTGT 61.216 61.111 0.00 0.00 0.00 3.72
5 6 3.215568 TGGCTTTGGTGCGGTGTG 61.216 61.111 0.00 0.00 0.00 3.82
6 7 3.216292 GTGGCTTTGGTGCGGTGT 61.216 61.111 0.00 0.00 0.00 4.16
7 8 3.977244 GGTGGCTTTGGTGCGGTG 61.977 66.667 0.00 0.00 0.00 4.94
8 9 4.204028 AGGTGGCTTTGGTGCGGT 62.204 61.111 0.00 0.00 0.00 5.68
9 10 3.365265 GAGGTGGCTTTGGTGCGG 61.365 66.667 0.00 0.00 0.00 5.69
10 11 3.726517 CGAGGTGGCTTTGGTGCG 61.727 66.667 0.00 0.00 0.00 5.34
11 12 2.594592 ACGAGGTGGCTTTGGTGC 60.595 61.111 0.00 0.00 0.00 5.01
12 13 0.951040 GAGACGAGGTGGCTTTGGTG 60.951 60.000 0.00 0.00 0.00 4.17
13 14 1.371558 GAGACGAGGTGGCTTTGGT 59.628 57.895 0.00 0.00 0.00 3.67
14 15 0.951040 GTGAGACGAGGTGGCTTTGG 60.951 60.000 0.00 0.00 0.00 3.28
15 16 0.249868 TGTGAGACGAGGTGGCTTTG 60.250 55.000 0.00 0.00 0.00 2.77
16 17 0.687354 ATGTGAGACGAGGTGGCTTT 59.313 50.000 0.00 0.00 0.00 3.51
17 18 0.687354 AATGTGAGACGAGGTGGCTT 59.313 50.000 0.00 0.00 0.00 4.35
18 19 0.247736 GAATGTGAGACGAGGTGGCT 59.752 55.000 0.00 0.00 0.00 4.75
19 20 1.078759 CGAATGTGAGACGAGGTGGC 61.079 60.000 0.00 0.00 0.00 5.01
20 21 0.243907 ACGAATGTGAGACGAGGTGG 59.756 55.000 0.00 0.00 0.00 4.61
21 22 1.721389 CAACGAATGTGAGACGAGGTG 59.279 52.381 0.00 0.00 0.00 4.00
22 23 1.340248 ACAACGAATGTGAGACGAGGT 59.660 47.619 0.00 0.00 41.93 3.85
23 24 2.065993 ACAACGAATGTGAGACGAGG 57.934 50.000 0.00 0.00 41.93 4.63
32 33 2.151202 GGATGTCACCACAACGAATGT 58.849 47.619 0.00 0.00 45.34 2.71
33 34 2.150390 TGGATGTCACCACAACGAATG 58.850 47.619 0.00 0.00 35.64 2.67
34 35 2.559698 TGGATGTCACCACAACGAAT 57.440 45.000 0.00 0.00 35.64 3.34
35 36 2.150390 CATGGATGTCACCACAACGAA 58.850 47.619 0.00 0.00 43.03 3.85
36 37 1.071542 ACATGGATGTCACCACAACGA 59.928 47.619 0.00 0.00 43.03 3.85
37 38 1.197492 CACATGGATGTCACCACAACG 59.803 52.381 0.00 0.00 43.03 4.10
38 39 1.068333 GCACATGGATGTCACCACAAC 60.068 52.381 0.00 0.00 43.03 3.32
39 40 1.202915 AGCACATGGATGTCACCACAA 60.203 47.619 0.00 0.00 43.03 3.33
40 41 0.401356 AGCACATGGATGTCACCACA 59.599 50.000 0.00 0.00 43.03 4.17
41 42 2.401583 TAGCACATGGATGTCACCAC 57.598 50.000 0.00 0.00 43.03 4.16
42 43 3.200605 AGATTAGCACATGGATGTCACCA 59.799 43.478 0.00 0.00 44.41 4.17
43 44 3.562973 CAGATTAGCACATGGATGTCACC 59.437 47.826 0.00 0.00 39.39 4.02
44 45 4.194640 ACAGATTAGCACATGGATGTCAC 58.805 43.478 0.00 0.00 39.39 3.67
45 46 4.162888 AGACAGATTAGCACATGGATGTCA 59.837 41.667 0.00 0.00 39.39 3.58
46 47 4.701765 AGACAGATTAGCACATGGATGTC 58.298 43.478 0.00 0.00 39.39 3.06
47 48 4.767578 AGACAGATTAGCACATGGATGT 57.232 40.909 0.00 0.00 42.84 3.06
48 49 5.925397 GTCTAGACAGATTAGCACATGGATG 59.075 44.000 18.20 0.00 32.09 3.51
49 50 5.011533 GGTCTAGACAGATTAGCACATGGAT 59.988 44.000 23.91 0.00 32.09 3.41
50 51 4.342378 GGTCTAGACAGATTAGCACATGGA 59.658 45.833 23.91 0.00 32.09 3.41
51 52 4.100035 TGGTCTAGACAGATTAGCACATGG 59.900 45.833 23.91 0.00 32.09 3.66
52 53 5.046529 GTGGTCTAGACAGATTAGCACATG 58.953 45.833 23.91 0.00 38.20 3.21
53 54 4.711846 TGTGGTCTAGACAGATTAGCACAT 59.288 41.667 23.91 0.00 41.92 3.21
54 55 4.086457 TGTGGTCTAGACAGATTAGCACA 58.914 43.478 23.91 20.98 43.83 4.57
55 56 4.720649 TGTGGTCTAGACAGATTAGCAC 57.279 45.455 23.91 18.92 38.65 4.40
56 57 4.036852 CGATGTGGTCTAGACAGATTAGCA 59.963 45.833 23.91 8.29 32.09 3.49
57 58 4.541779 CGATGTGGTCTAGACAGATTAGC 58.458 47.826 23.91 5.72 32.09 3.09
58 59 4.541779 GCGATGTGGTCTAGACAGATTAG 58.458 47.826 23.91 11.71 32.09 1.73
59 60 3.318275 GGCGATGTGGTCTAGACAGATTA 59.682 47.826 23.91 6.16 32.09 1.75
60 61 2.101582 GGCGATGTGGTCTAGACAGATT 59.898 50.000 23.91 6.30 32.09 2.40
61 62 1.683917 GGCGATGTGGTCTAGACAGAT 59.316 52.381 23.91 13.51 32.09 2.90
62 63 1.103803 GGCGATGTGGTCTAGACAGA 58.896 55.000 23.91 7.45 0.00 3.41
63 64 0.248661 CGGCGATGTGGTCTAGACAG 60.249 60.000 23.91 8.81 0.00 3.51
64 65 0.678684 TCGGCGATGTGGTCTAGACA 60.679 55.000 23.91 5.18 0.00 3.41
65 66 0.029567 CTCGGCGATGTGGTCTAGAC 59.970 60.000 14.87 14.87 0.00 2.59
66 67 0.393944 ACTCGGCGATGTGGTCTAGA 60.394 55.000 11.27 0.00 0.00 2.43
67 68 0.248661 CACTCGGCGATGTGGTCTAG 60.249 60.000 22.99 8.16 0.00 2.43
68 69 0.678684 TCACTCGGCGATGTGGTCTA 60.679 55.000 27.04 13.53 35.15 2.59
69 70 1.938657 CTCACTCGGCGATGTGGTCT 61.939 60.000 27.04 1.68 35.15 3.85
70 71 1.517257 CTCACTCGGCGATGTGGTC 60.517 63.158 27.04 0.00 35.15 4.02
71 72 2.214181 GACTCACTCGGCGATGTGGT 62.214 60.000 27.04 23.77 35.15 4.16
72 73 1.517257 GACTCACTCGGCGATGTGG 60.517 63.158 27.04 21.81 35.15 4.17
73 74 0.179127 ATGACTCACTCGGCGATGTG 60.179 55.000 24.04 24.04 35.68 3.21
74 75 0.179127 CATGACTCACTCGGCGATGT 60.179 55.000 11.27 8.18 0.00 3.06
75 76 1.485838 GCATGACTCACTCGGCGATG 61.486 60.000 11.27 11.38 0.00 3.84
76 77 1.227089 GCATGACTCACTCGGCGAT 60.227 57.895 11.27 0.00 0.00 4.58
77 78 1.029947 TAGCATGACTCACTCGGCGA 61.030 55.000 10.14 10.14 0.00 5.54
78 79 0.593518 CTAGCATGACTCACTCGGCG 60.594 60.000 0.00 0.00 0.00 6.46
79 80 0.873743 GCTAGCATGACTCACTCGGC 60.874 60.000 10.63 0.00 0.00 5.54
80 81 0.249238 GGCTAGCATGACTCACTCGG 60.249 60.000 18.24 0.00 0.00 4.63
81 82 0.743688 AGGCTAGCATGACTCACTCG 59.256 55.000 18.24 0.00 0.00 4.18
82 83 1.805871 GCAGGCTAGCATGACTCACTC 60.806 57.143 32.02 9.25 0.00 3.51
83 84 0.177604 GCAGGCTAGCATGACTCACT 59.822 55.000 32.02 6.80 0.00 3.41
84 85 1.150567 CGCAGGCTAGCATGACTCAC 61.151 60.000 32.02 13.17 0.00 3.51
85 86 1.142531 CGCAGGCTAGCATGACTCA 59.857 57.895 32.02 0.00 0.00 3.41
86 87 0.460987 AACGCAGGCTAGCATGACTC 60.461 55.000 32.02 13.90 0.00 3.36
87 88 0.036010 AAACGCAGGCTAGCATGACT 60.036 50.000 32.02 13.12 0.00 3.41
88 89 0.097674 CAAACGCAGGCTAGCATGAC 59.902 55.000 32.02 20.85 0.00 3.06
89 90 0.036483 TCAAACGCAGGCTAGCATGA 60.036 50.000 32.02 7.86 0.00 3.07
90 91 0.804364 TTCAAACGCAGGCTAGCATG 59.196 50.000 24.52 24.52 0.00 4.06
91 92 1.533625 TTTCAAACGCAGGCTAGCAT 58.466 45.000 18.24 6.55 0.00 3.79
92 93 1.199789 CATTTCAAACGCAGGCTAGCA 59.800 47.619 18.24 0.00 0.00 3.49
93 94 1.200020 ACATTTCAAACGCAGGCTAGC 59.800 47.619 6.04 6.04 0.00 3.42
94 95 2.474526 CGACATTTCAAACGCAGGCTAG 60.475 50.000 0.00 0.00 0.00 3.42
95 96 1.463056 CGACATTTCAAACGCAGGCTA 59.537 47.619 0.00 0.00 0.00 3.93
96 97 0.238289 CGACATTTCAAACGCAGGCT 59.762 50.000 0.00 0.00 0.00 4.58
97 98 0.040425 ACGACATTTCAAACGCAGGC 60.040 50.000 0.00 0.00 0.00 4.85
98 99 1.531149 AGACGACATTTCAAACGCAGG 59.469 47.619 0.00 0.00 0.00 4.85
99 100 2.476619 AGAGACGACATTTCAAACGCAG 59.523 45.455 0.00 0.00 0.00 5.18
100 101 2.220824 CAGAGACGACATTTCAAACGCA 59.779 45.455 0.00 0.00 0.00 5.24
101 102 2.221055 ACAGAGACGACATTTCAAACGC 59.779 45.455 0.00 0.00 0.00 4.84
102 103 3.489416 TCACAGAGACGACATTTCAAACG 59.511 43.478 0.00 0.00 0.00 3.60
103 104 4.762809 GTCACAGAGACGACATTTCAAAC 58.237 43.478 0.00 0.00 37.53 2.93
115 116 7.367285 GTGATATTAGAGATGGTCACAGAGAC 58.633 42.308 0.00 0.00 46.83 3.36
116 117 6.491745 GGTGATATTAGAGATGGTCACAGAGA 59.508 42.308 5.78 0.00 38.10 3.10
117 118 6.493115 AGGTGATATTAGAGATGGTCACAGAG 59.507 42.308 5.78 0.00 38.10 3.35
118 119 6.266330 CAGGTGATATTAGAGATGGTCACAGA 59.734 42.308 5.78 0.00 38.10 3.41
119 120 6.453943 CAGGTGATATTAGAGATGGTCACAG 58.546 44.000 5.78 0.00 38.10 3.66
120 121 5.305386 CCAGGTGATATTAGAGATGGTCACA 59.695 44.000 5.78 0.00 38.10 3.58
121 122 5.540337 TCCAGGTGATATTAGAGATGGTCAC 59.460 44.000 0.00 0.00 36.22 3.67
122 123 5.715921 TCCAGGTGATATTAGAGATGGTCA 58.284 41.667 0.00 0.00 0.00 4.02
123 124 6.865834 ATCCAGGTGATATTAGAGATGGTC 57.134 41.667 0.00 0.00 0.00 4.02
124 125 7.639062 AAATCCAGGTGATATTAGAGATGGT 57.361 36.000 0.00 0.00 31.83 3.55
125 126 8.159447 TCAAAATCCAGGTGATATTAGAGATGG 58.841 37.037 0.00 0.00 31.83 3.51
126 127 9.217278 CTCAAAATCCAGGTGATATTAGAGATG 57.783 37.037 0.00 0.00 31.83 2.90
127 128 7.882271 GCTCAAAATCCAGGTGATATTAGAGAT 59.118 37.037 0.00 0.00 31.83 2.75
128 129 7.220030 GCTCAAAATCCAGGTGATATTAGAGA 58.780 38.462 0.00 0.00 31.83 3.10
129 130 6.429385 GGCTCAAAATCCAGGTGATATTAGAG 59.571 42.308 0.00 0.00 31.83 2.43
130 131 6.101734 AGGCTCAAAATCCAGGTGATATTAGA 59.898 38.462 0.00 0.00 31.83 2.10
131 132 6.302269 AGGCTCAAAATCCAGGTGATATTAG 58.698 40.000 0.00 0.00 31.83 1.73
132 133 6.101734 AGAGGCTCAAAATCCAGGTGATATTA 59.898 38.462 18.26 0.00 31.83 0.98
133 134 5.103771 AGAGGCTCAAAATCCAGGTGATATT 60.104 40.000 18.26 0.00 31.83 1.28
134 135 4.414846 AGAGGCTCAAAATCCAGGTGATAT 59.585 41.667 18.26 0.00 31.83 1.63
135 136 3.782523 AGAGGCTCAAAATCCAGGTGATA 59.217 43.478 18.26 0.00 31.83 2.15
136 137 2.579860 AGAGGCTCAAAATCCAGGTGAT 59.420 45.455 18.26 0.00 34.22 3.06
137 138 1.988107 AGAGGCTCAAAATCCAGGTGA 59.012 47.619 18.26 0.00 0.00 4.02
138 139 2.363683 GAGAGGCTCAAAATCCAGGTG 58.636 52.381 18.26 0.00 0.00 4.00
139 140 1.065854 CGAGAGGCTCAAAATCCAGGT 60.066 52.381 18.26 0.00 0.00 4.00
140 141 1.661341 CGAGAGGCTCAAAATCCAGG 58.339 55.000 18.26 0.00 0.00 4.45
141 142 1.012841 GCGAGAGGCTCAAAATCCAG 58.987 55.000 18.26 0.00 39.11 3.86
142 143 0.740868 CGCGAGAGGCTCAAAATCCA 60.741 55.000 18.26 0.00 40.44 3.41
143 144 2.009888 CGCGAGAGGCTCAAAATCC 58.990 57.895 18.26 0.00 40.44 3.01
144 145 1.349973 GCGCGAGAGGCTCAAAATC 59.650 57.895 18.26 4.27 40.44 2.17
145 146 0.745845 ATGCGCGAGAGGCTCAAAAT 60.746 50.000 18.26 0.00 40.25 1.82
146 147 0.955428 AATGCGCGAGAGGCTCAAAA 60.955 50.000 18.26 0.00 40.25 2.44
147 148 1.361668 GAATGCGCGAGAGGCTCAAA 61.362 55.000 18.26 0.00 40.25 2.69
148 149 1.811266 GAATGCGCGAGAGGCTCAA 60.811 57.895 18.26 0.00 40.25 3.02
149 150 2.202797 GAATGCGCGAGAGGCTCA 60.203 61.111 18.26 0.00 41.26 4.26
150 151 1.086634 AAAGAATGCGCGAGAGGCTC 61.087 55.000 12.10 6.34 40.44 4.70
151 152 1.078848 AAAGAATGCGCGAGAGGCT 60.079 52.632 12.10 0.00 40.44 4.58
152 153 1.349973 GAAAGAATGCGCGAGAGGC 59.650 57.895 12.10 0.00 38.69 4.70
153 154 0.740868 TGGAAAGAATGCGCGAGAGG 60.741 55.000 12.10 0.00 0.00 3.69
154 155 1.078709 TTGGAAAGAATGCGCGAGAG 58.921 50.000 12.10 0.00 0.00 3.20
155 156 0.796312 GTTGGAAAGAATGCGCGAGA 59.204 50.000 12.10 0.00 0.00 4.04
156 157 0.179189 GGTTGGAAAGAATGCGCGAG 60.179 55.000 12.10 0.00 0.00 5.03
157 158 0.886938 TGGTTGGAAAGAATGCGCGA 60.887 50.000 12.10 0.00 0.00 5.87
158 159 0.171007 ATGGTTGGAAAGAATGCGCG 59.829 50.000 0.00 0.00 0.00 6.86
159 160 1.994779 CAATGGTTGGAAAGAATGCGC 59.005 47.619 0.00 0.00 0.00 6.09
160 161 1.994779 GCAATGGTTGGAAAGAATGCG 59.005 47.619 0.00 0.00 0.00 4.73
161 162 2.349590 GGCAATGGTTGGAAAGAATGC 58.650 47.619 0.00 0.00 0.00 3.56
162 163 2.568509 AGGGCAATGGTTGGAAAGAATG 59.431 45.455 0.00 0.00 0.00 2.67
163 164 2.906568 AGGGCAATGGTTGGAAAGAAT 58.093 42.857 0.00 0.00 0.00 2.40
164 165 2.397044 AGGGCAATGGTTGGAAAGAA 57.603 45.000 0.00 0.00 0.00 2.52
165 166 2.883888 GCTAGGGCAATGGTTGGAAAGA 60.884 50.000 0.00 0.00 38.54 2.52
166 167 1.478105 GCTAGGGCAATGGTTGGAAAG 59.522 52.381 0.00 0.00 38.54 2.62
167 168 1.203112 TGCTAGGGCAATGGTTGGAAA 60.203 47.619 0.00 0.00 46.36 3.13
168 169 0.407528 TGCTAGGGCAATGGTTGGAA 59.592 50.000 0.00 0.00 46.36 3.53
169 170 2.082834 TGCTAGGGCAATGGTTGGA 58.917 52.632 0.00 0.00 46.36 3.53
170 171 4.762016 TGCTAGGGCAATGGTTGG 57.238 55.556 0.00 0.00 46.36 3.77
180 181 2.311688 CTAGGGTTGCCGTGCTAGGG 62.312 65.000 0.00 0.00 0.00 3.53
181 182 1.144057 CTAGGGTTGCCGTGCTAGG 59.856 63.158 0.00 0.00 0.00 3.02
182 183 0.753262 ATCTAGGGTTGCCGTGCTAG 59.247 55.000 0.00 0.00 0.00 3.42
183 184 0.750850 GATCTAGGGTTGCCGTGCTA 59.249 55.000 0.00 0.00 0.00 3.49
184 185 1.522569 GATCTAGGGTTGCCGTGCT 59.477 57.895 0.00 0.00 0.00 4.40
185 186 1.883084 CGATCTAGGGTTGCCGTGC 60.883 63.158 0.00 0.00 0.00 5.34
186 187 0.174845 TTCGATCTAGGGTTGCCGTG 59.825 55.000 0.00 0.00 0.00 4.94
187 188 0.460311 CTTCGATCTAGGGTTGCCGT 59.540 55.000 0.00 0.00 0.00 5.68
188 189 0.876342 GCTTCGATCTAGGGTTGCCG 60.876 60.000 0.00 0.00 0.00 5.69
189 190 0.178068 TGCTTCGATCTAGGGTTGCC 59.822 55.000 0.00 0.00 0.00 4.52
190 191 1.291132 GTGCTTCGATCTAGGGTTGC 58.709 55.000 0.00 0.00 0.00 4.17
191 192 2.672961 TGTGCTTCGATCTAGGGTTG 57.327 50.000 0.00 0.00 0.00 3.77
192 193 3.008049 ACTTTGTGCTTCGATCTAGGGTT 59.992 43.478 0.00 0.00 0.00 4.11
193 194 2.567615 ACTTTGTGCTTCGATCTAGGGT 59.432 45.455 0.00 0.00 0.00 4.34
194 195 3.190874 GACTTTGTGCTTCGATCTAGGG 58.809 50.000 0.00 0.00 0.00 3.53
195 196 3.190874 GGACTTTGTGCTTCGATCTAGG 58.809 50.000 0.00 0.00 0.00 3.02
196 197 2.854777 CGGACTTTGTGCTTCGATCTAG 59.145 50.000 0.00 0.00 0.00 2.43
197 198 2.490509 TCGGACTTTGTGCTTCGATCTA 59.509 45.455 0.00 0.00 0.00 1.98
198 199 1.272490 TCGGACTTTGTGCTTCGATCT 59.728 47.619 0.00 0.00 0.00 2.75
199 200 1.710013 TCGGACTTTGTGCTTCGATC 58.290 50.000 0.00 0.00 0.00 3.69
200 201 2.163818 TTCGGACTTTGTGCTTCGAT 57.836 45.000 0.00 0.00 0.00 3.59
201 202 2.163818 ATTCGGACTTTGTGCTTCGA 57.836 45.000 0.00 0.00 0.00 3.71
202 203 2.721797 CGAATTCGGACTTTGTGCTTCG 60.722 50.000 20.16 0.00 35.37 3.79
203 204 2.478894 TCGAATTCGGACTTTGTGCTTC 59.521 45.455 26.47 0.00 40.29 3.86
204 205 2.223377 GTCGAATTCGGACTTTGTGCTT 59.777 45.455 26.47 0.00 40.29 3.91
205 206 1.798813 GTCGAATTCGGACTTTGTGCT 59.201 47.619 26.47 0.00 40.29 4.40
206 207 1.529438 TGTCGAATTCGGACTTTGTGC 59.471 47.619 26.47 7.44 40.29 4.57
207 208 2.542178 TGTGTCGAATTCGGACTTTGTG 59.458 45.455 26.47 0.00 40.29 3.33
208 209 2.800544 CTGTGTCGAATTCGGACTTTGT 59.199 45.455 26.47 0.00 40.29 2.83
209 210 2.411547 GCTGTGTCGAATTCGGACTTTG 60.412 50.000 26.47 16.65 40.29 2.77
210 211 1.798813 GCTGTGTCGAATTCGGACTTT 59.201 47.619 26.47 0.00 40.29 2.66
211 212 1.000955 AGCTGTGTCGAATTCGGACTT 59.999 47.619 26.47 11.10 40.29 3.01
212 213 0.603569 AGCTGTGTCGAATTCGGACT 59.396 50.000 26.47 12.37 40.29 3.85
213 214 2.186076 CTAGCTGTGTCGAATTCGGAC 58.814 52.381 26.47 21.88 40.29 4.79
214 215 1.469251 GCTAGCTGTGTCGAATTCGGA 60.469 52.381 26.47 11.77 40.29 4.55
215 216 0.924090 GCTAGCTGTGTCGAATTCGG 59.076 55.000 26.47 11.87 40.29 4.30
216 217 1.585668 CAGCTAGCTGTGTCGAATTCG 59.414 52.381 32.46 21.78 39.10 3.34
228 229 5.413309 AGAAACTATTGACACAGCTAGCT 57.587 39.130 12.68 12.68 0.00 3.32
229 230 5.520649 GGTAGAAACTATTGACACAGCTAGC 59.479 44.000 6.62 6.62 0.00 3.42
230 231 6.043411 GGGTAGAAACTATTGACACAGCTAG 58.957 44.000 0.00 0.00 0.00 3.42
231 232 5.105064 GGGGTAGAAACTATTGACACAGCTA 60.105 44.000 0.00 0.00 0.00 3.32
232 233 4.323562 GGGGTAGAAACTATTGACACAGCT 60.324 45.833 0.00 0.00 0.00 4.24
233 234 3.939592 GGGGTAGAAACTATTGACACAGC 59.060 47.826 0.00 0.00 0.00 4.40
234 235 4.019681 TGGGGGTAGAAACTATTGACACAG 60.020 45.833 0.00 0.00 0.00 3.66
235 236 3.911260 TGGGGGTAGAAACTATTGACACA 59.089 43.478 0.00 0.00 0.00 3.72
236 237 4.259356 GTGGGGGTAGAAACTATTGACAC 58.741 47.826 0.00 0.00 0.00 3.67
237 238 3.264964 GGTGGGGGTAGAAACTATTGACA 59.735 47.826 0.00 0.00 0.00 3.58
238 239 3.522343 AGGTGGGGGTAGAAACTATTGAC 59.478 47.826 0.00 0.00 0.00 3.18
239 240 3.778629 GAGGTGGGGGTAGAAACTATTGA 59.221 47.826 0.00 0.00 0.00 2.57
240 241 3.118000 GGAGGTGGGGGTAGAAACTATTG 60.118 52.174 0.00 0.00 0.00 1.90
241 242 3.120898 GGAGGTGGGGGTAGAAACTATT 58.879 50.000 0.00 0.00 0.00 1.73
242 243 2.631540 GGGAGGTGGGGGTAGAAACTAT 60.632 54.545 0.00 0.00 0.00 2.12
243 244 1.274011 GGGAGGTGGGGGTAGAAACTA 60.274 57.143 0.00 0.00 0.00 2.24
244 245 0.549413 GGGAGGTGGGGGTAGAAACT 60.549 60.000 0.00 0.00 0.00 2.66
245 246 0.843343 TGGGAGGTGGGGGTAGAAAC 60.843 60.000 0.00 0.00 0.00 2.78
246 247 0.843343 GTGGGAGGTGGGGGTAGAAA 60.843 60.000 0.00 0.00 0.00 2.52
247 248 1.229723 GTGGGAGGTGGGGGTAGAA 60.230 63.158 0.00 0.00 0.00 2.10
248 249 2.453054 GTGGGAGGTGGGGGTAGA 59.547 66.667 0.00 0.00 0.00 2.59
249 250 3.081409 CGTGGGAGGTGGGGGTAG 61.081 72.222 0.00 0.00 0.00 3.18
250 251 4.726254 CCGTGGGAGGTGGGGGTA 62.726 72.222 0.00 0.00 0.00 3.69
262 263 4.235762 CTACCGATGGGGCCGTGG 62.236 72.222 0.00 0.00 40.62 4.94
263 264 4.910585 GCTACCGATGGGGCCGTG 62.911 72.222 0.00 0.00 40.62 4.94
264 265 3.744003 TAGCTACCGATGGGGCCGT 62.744 63.158 0.00 0.00 40.62 5.68
265 266 2.915659 TAGCTACCGATGGGGCCG 60.916 66.667 0.00 0.00 40.62 6.13
266 267 2.100879 CTGTAGCTACCGATGGGGCC 62.101 65.000 21.01 0.00 40.62 5.80
267 268 1.367840 CTGTAGCTACCGATGGGGC 59.632 63.158 21.01 0.00 40.62 5.80
268 269 1.367840 GCTGTAGCTACCGATGGGG 59.632 63.158 21.01 4.16 39.02 4.96
269 270 1.367840 GGCTGTAGCTACCGATGGG 59.632 63.158 21.01 5.73 41.70 4.00
270 271 1.367840 GGGCTGTAGCTACCGATGG 59.632 63.158 21.01 7.34 41.70 3.51
271 272 0.249489 GTGGGCTGTAGCTACCGATG 60.249 60.000 21.01 9.64 41.70 3.84
272 273 1.735376 CGTGGGCTGTAGCTACCGAT 61.735 60.000 21.01 0.00 41.70 4.18
273 274 2.412323 CGTGGGCTGTAGCTACCGA 61.412 63.158 21.01 2.49 41.70 4.69
274 275 2.104331 CGTGGGCTGTAGCTACCG 59.896 66.667 21.01 15.76 41.70 4.02
275 276 2.202892 GCGTGGGCTGTAGCTACC 60.203 66.667 21.01 6.30 41.70 3.18
276 277 1.810030 GTGCGTGGGCTGTAGCTAC 60.810 63.158 17.30 17.30 41.70 3.58
277 278 2.577059 GTGCGTGGGCTGTAGCTA 59.423 61.111 3.63 0.00 41.70 3.32
278 279 4.394712 GGTGCGTGGGCTGTAGCT 62.395 66.667 3.63 0.00 41.70 3.32
280 281 4.778143 GGGGTGCGTGGGCTGTAG 62.778 72.222 0.00 0.00 40.82 2.74
286 287 4.096003 CTAGGTGGGGTGCGTGGG 62.096 72.222 0.00 0.00 0.00 4.61
287 288 3.319198 ACTAGGTGGGGTGCGTGG 61.319 66.667 0.00 0.00 0.00 4.94
288 289 2.047274 CACTAGGTGGGGTGCGTG 60.047 66.667 0.00 0.00 0.00 5.34
289 290 2.203728 TCACTAGGTGGGGTGCGT 60.204 61.111 0.00 0.00 33.87 5.24
290 291 2.264794 GTCACTAGGTGGGGTGCG 59.735 66.667 0.00 0.00 33.87 5.34
291 292 1.003718 GTGTCACTAGGTGGGGTGC 60.004 63.158 0.00 0.00 33.87 5.01
292 293 1.125093 TGGTGTCACTAGGTGGGGTG 61.125 60.000 2.35 0.00 33.87 4.61
293 294 1.125711 GTGGTGTCACTAGGTGGGGT 61.126 60.000 2.35 0.00 40.58 4.95
294 295 1.677552 GTGGTGTCACTAGGTGGGG 59.322 63.158 2.35 0.00 40.58 4.96
295 296 1.292223 CGTGGTGTCACTAGGTGGG 59.708 63.158 2.35 0.00 41.53 4.61
296 297 1.292223 CCGTGGTGTCACTAGGTGG 59.708 63.158 2.35 0.00 41.53 4.61
297 298 1.292223 CCCGTGGTGTCACTAGGTG 59.708 63.158 2.35 0.00 41.53 4.00
298 299 1.911766 CCCCGTGGTGTCACTAGGT 60.912 63.158 2.35 0.00 41.53 3.08
299 300 2.656069 CCCCCGTGGTGTCACTAGG 61.656 68.421 2.35 2.32 41.53 3.02
300 301 2.978824 CCCCCGTGGTGTCACTAG 59.021 66.667 2.35 0.00 41.53 2.57
301 302 3.315949 GCCCCCGTGGTGTCACTA 61.316 66.667 2.35 0.00 41.53 2.74
305 306 4.699522 GAGTGCCCCCGTGGTGTC 62.700 72.222 0.00 0.00 36.04 3.67
308 309 3.857521 TTAGGAGTGCCCCCGTGGT 62.858 63.158 0.00 0.00 36.04 4.16
309 310 2.132089 TTTTAGGAGTGCCCCCGTGG 62.132 60.000 0.00 0.00 34.66 4.94
310 311 0.034477 ATTTTAGGAGTGCCCCCGTG 60.034 55.000 0.00 0.00 34.66 4.94
311 312 0.034477 CATTTTAGGAGTGCCCCCGT 60.034 55.000 0.00 0.00 34.66 5.28
312 313 1.384222 GCATTTTAGGAGTGCCCCCG 61.384 60.000 0.00 0.00 34.66 5.73
323 324 6.367969 AGTTGTTCGTAGGTGTAGCATTTTAG 59.632 38.462 0.00 0.00 0.00 1.85
324 325 6.225318 AGTTGTTCGTAGGTGTAGCATTTTA 58.775 36.000 0.00 0.00 0.00 1.52
369 370 3.451540 GTGGTTAGTTAGGAGAGAAGGGG 59.548 52.174 0.00 0.00 0.00 4.79
373 374 3.078612 AGGGGTGGTTAGTTAGGAGAGAA 59.921 47.826 0.00 0.00 0.00 2.87
374 375 2.658489 AGGGGTGGTTAGTTAGGAGAGA 59.342 50.000 0.00 0.00 0.00 3.10
395 396 2.178580 GGCCCACCATGAAATTCAAGA 58.821 47.619 0.00 0.00 35.26 3.02
398 399 2.622977 GGTAGGCCCACCATGAAATTCA 60.623 50.000 16.35 0.00 38.55 2.57
421 422 7.671819 TCAATTGTTAATTGGATGTTAGTGGGA 59.328 33.333 5.13 0.00 46.40 4.37
448 450 1.756538 GGGGGTTTGCATAATGAGGTG 59.243 52.381 0.00 0.00 0.00 4.00
458 460 2.612285 TACATGATTGGGGGTTTGCA 57.388 45.000 0.00 0.00 0.00 4.08
460 462 3.768757 ACACATACATGATTGGGGGTTTG 59.231 43.478 0.00 0.00 0.00 2.93
461 463 4.059773 ACACATACATGATTGGGGGTTT 57.940 40.909 0.00 0.00 0.00 3.27
463 465 3.756082 AACACATACATGATTGGGGGT 57.244 42.857 0.00 0.00 0.00 4.95
480 482 4.509970 CGTTGACCTCAGACATGTTAAACA 59.490 41.667 0.00 0.00 0.00 2.83
483 485 3.070446 ACCGTTGACCTCAGACATGTTAA 59.930 43.478 0.00 0.00 0.00 2.01
492 494 3.543680 ATCCATTACCGTTGACCTCAG 57.456 47.619 0.00 0.00 0.00 3.35
506 508 7.873195 ACTTAAAGGGAGTAGCTAAATCCATT 58.127 34.615 21.85 19.22 38.68 3.16
520 522 7.115947 CGTTGACTTAGTACAACTTAAAGGGAG 59.884 40.741 18.15 4.14 42.53 4.30
542 544 7.657354 TCCTCTGATCCATATTATTTGTCGTTG 59.343 37.037 0.00 0.00 0.00 4.10
544 546 7.303182 TCCTCTGATCCATATTATTTGTCGT 57.697 36.000 0.00 0.00 0.00 4.34
563 593 4.181799 ACCCGCTATACTTACTTCCTCT 57.818 45.455 0.00 0.00 0.00 3.69
564 594 4.556302 CGAACCCGCTATACTTACTTCCTC 60.556 50.000 0.00 0.00 0.00 3.71
581 611 0.609662 TACAACCTAGTGGCGAACCC 59.390 55.000 0.00 0.00 36.63 4.11
582 612 2.093869 TCATACAACCTAGTGGCGAACC 60.094 50.000 0.00 0.00 36.63 3.62
586 616 2.665649 TGTCATACAACCTAGTGGCG 57.334 50.000 0.00 0.00 36.63 5.69
619 649 7.563924 TCATACCCATAGGACCATATAGCTAAC 59.436 40.741 0.00 0.00 36.73 2.34
626 656 5.665701 ACTGTCATACCCATAGGACCATAT 58.334 41.667 0.00 0.00 40.64 1.78
627 657 5.087923 ACTGTCATACCCATAGGACCATA 57.912 43.478 0.00 0.00 40.64 2.74
657 690 5.079689 TGGATTATTCTGCTGTCACGTAA 57.920 39.130 0.00 0.00 0.00 3.18
662 695 6.660521 ACTGAAAATGGATTATTCTGCTGTCA 59.339 34.615 0.00 0.00 0.00 3.58
677 712 4.523943 TGAGGTTGATGGAACTGAAAATGG 59.476 41.667 0.00 0.00 34.66 3.16
793 845 7.493645 GGATGCTTGATTTCTTCTTTATTTGGG 59.506 37.037 0.00 0.00 0.00 4.12
826 1129 4.201881 GGTTGACTTACCACAGTTGTTGTC 60.202 45.833 0.00 4.60 38.16 3.18
827 1130 3.692593 GGTTGACTTACCACAGTTGTTGT 59.307 43.478 0.00 0.00 41.94 3.32
830 1133 3.054655 ACAGGTTGACTTACCACAGTTGT 60.055 43.478 0.00 0.00 40.82 3.32
833 1168 3.070590 GGTACAGGTTGACTTACCACAGT 59.929 47.826 0.00 0.00 40.82 3.55
835 1170 2.369532 GGGTACAGGTTGACTTACCACA 59.630 50.000 0.00 0.00 40.82 4.17
837 1172 1.619827 CGGGTACAGGTTGACTTACCA 59.380 52.381 0.00 0.00 40.82 3.25
839 1174 1.001181 TGCGGGTACAGGTTGACTTAC 59.999 52.381 0.00 0.00 0.00 2.34
840 1175 1.340088 TGCGGGTACAGGTTGACTTA 58.660 50.000 0.00 0.00 0.00 2.24
849 1184 3.065371 GGAGAAATCATTTGCGGGTACAG 59.935 47.826 0.00 0.00 0.00 2.74
851 1186 3.279434 AGGAGAAATCATTTGCGGGTAC 58.721 45.455 0.00 0.00 0.00 3.34
863 1198 1.134788 TCGAGCGGGAAAGGAGAAATC 60.135 52.381 0.00 0.00 0.00 2.17
869 1204 1.002659 TGATTTTCGAGCGGGAAAGGA 59.997 47.619 5.57 0.00 37.24 3.36
892 1227 3.467119 CACCTGACGTACGTGCGC 61.467 66.667 28.16 18.09 34.88 6.09
893 1228 2.803670 CCACCTGACGTACGTGCG 60.804 66.667 28.16 24.57 37.94 5.34
959 2066 2.862140 GCGTTTGGAACCACTGAAATGG 60.862 50.000 0.00 0.00 46.10 3.16
1066 2198 1.743772 GCTCGTATCCATGTTGCCAGT 60.744 52.381 0.00 0.00 0.00 4.00
1067 2199 0.940126 GCTCGTATCCATGTTGCCAG 59.060 55.000 0.00 0.00 0.00 4.85
1068 2200 0.251634 TGCTCGTATCCATGTTGCCA 59.748 50.000 0.00 0.00 0.00 4.92
1215 2376 4.329545 GAGGCGCCCCAGACAACA 62.330 66.667 26.15 0.00 0.00 3.33
1235 2396 4.161295 TGAGCGGGATGAAGGCGG 62.161 66.667 0.00 0.00 0.00 6.13
1263 2424 1.077787 CCCCAACAAGGCGCTGATA 60.078 57.895 7.64 0.00 35.39 2.15
1276 2437 3.009115 CGCCTTCCTCTCCCCCAA 61.009 66.667 0.00 0.00 0.00 4.12
1311 2472 3.551496 TTTCTGGCAGCCTGGACGG 62.551 63.158 17.78 0.00 0.00 4.79
1536 2697 0.251354 ACATCACGATGAGGCAAGCT 59.749 50.000 13.83 0.00 41.20 3.74
1652 2813 1.519246 CTGCTCGCCATGAGGAAGA 59.481 57.895 0.00 0.00 45.18 2.87
1707 2868 1.524002 GAGCTGAGCCATGTAGCCA 59.476 57.895 0.00 0.00 38.18 4.75
1753 2914 1.066858 CACGTAAGGAGGCACATGACT 60.067 52.381 0.00 0.00 46.39 3.41
1776 2937 2.022240 GCTCCTTGCTCTCCCCTACG 62.022 65.000 0.00 0.00 38.95 3.51
2112 3288 1.134128 TCACTTGCAAACCAGAGCTCA 60.134 47.619 17.77 0.00 0.00 4.26
2256 3433 1.613255 CCGGGTGTGAAGGCAATTACT 60.613 52.381 0.00 0.00 0.00 2.24
2285 3462 4.883354 CTGGAGCCGGGGCATTCC 62.883 72.222 12.97 11.44 44.88 3.01
2286 3463 3.125376 ATCTGGAGCCGGGGCATTC 62.125 63.158 12.97 1.25 44.88 2.67
2287 3464 3.099170 ATCTGGAGCCGGGGCATT 61.099 61.111 12.97 0.00 44.88 3.56
2370 3556 1.913317 CGATGATCTCACACGCTTCA 58.087 50.000 0.00 0.00 0.00 3.02
2517 3703 1.243902 GCCCGATTTTGTCACTCCAA 58.756 50.000 0.00 0.00 0.00 3.53
2529 3715 1.079127 CACCGAGTTCTGCCCGATT 60.079 57.895 0.00 0.00 0.00 3.34
2841 4042 0.736325 ATGCCGTGTGCGAGTACTTC 60.736 55.000 0.00 0.00 45.60 3.01
2904 4105 2.030185 CAGGTACGCGCAATAGTAGGAT 60.030 50.000 5.73 0.00 0.00 3.24
3181 4385 1.409064 CATCTCCGACCAGAAATCCGA 59.591 52.381 0.00 0.00 0.00 4.55
3261 4465 1.007734 GAGCGTGACGAACTCACCA 60.008 57.895 10.10 0.00 46.01 4.17
3264 4468 1.082300 GACGAGCGTGACGAACTCA 60.082 57.895 10.10 0.00 34.70 3.41
3450 4676 5.122396 ACTTGAGACATTGATTTACTTCCGC 59.878 40.000 0.00 0.00 0.00 5.54
3561 4800 3.086282 TCCCGACAAAATTTTAGGCCTC 58.914 45.455 9.68 0.00 0.00 4.70
3584 4824 6.403866 TTGGATCAAAGTTGCACTATTTGT 57.596 33.333 13.98 5.39 35.80 2.83
3694 4934 7.900782 ACCATCACAATTACTACAACACTAC 57.099 36.000 0.00 0.00 0.00 2.73
3777 5020 6.652205 AATACTACCCCTCCATCTCAAAAA 57.348 37.500 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.