Multiple sequence alignment - TraesCS2D01G084900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G084900 chr2D 100.000 2537 0 0 1 2537 36770092 36772628 0.000000e+00 4686.0
1 TraesCS2D01G084900 chr2D 85.888 1070 92 32 745 1791 36779224 36780257 0.000000e+00 1085.0
2 TraesCS2D01G084900 chr2D 87.066 317 34 4 2156 2465 36781079 36781395 4.020000e-93 351.0
3 TraesCS2D01G084900 chr2D 77.674 533 67 27 1033 1530 36751153 36751668 6.910000e-71 278.0
4 TraesCS2D01G084900 chr2D 92.121 165 12 1 483 646 30231831 30231667 5.460000e-57 231.0
5 TraesCS2D01G084900 chr2D 82.902 193 20 12 248 435 650867719 650867903 7.260000e-36 161.0
6 TraesCS2D01G084900 chr2A 93.187 1233 54 12 778 1994 41169999 41171217 0.000000e+00 1784.0
7 TraesCS2D01G084900 chr2A 92.308 481 36 1 1 480 41158504 41158984 0.000000e+00 682.0
8 TraesCS2D01G084900 chr2A 94.921 315 9 4 2157 2465 41171170 41171483 1.060000e-133 486.0
9 TraesCS2D01G084900 chr2A 77.674 533 67 27 1033 1530 41103432 41103947 6.910000e-71 278.0
10 TraesCS2D01G084900 chr2A 90.395 177 15 2 478 653 460904171 460903996 5.460000e-57 231.0
11 TraesCS2D01G084900 chr2A 95.455 132 6 0 645 776 41159250 41159381 7.110000e-51 211.0
12 TraesCS2D01G084900 chr2A 86.294 197 11 8 1672 1867 41226287 41226468 1.540000e-47 200.0
13 TraesCS2D01G084900 chr2A 85.000 200 14 7 1667 1865 41213281 41213465 3.330000e-44 189.0
14 TraesCS2D01G084900 chr2A 80.114 176 25 7 3 175 515142861 515142693 3.430000e-24 122.0
15 TraesCS2D01G084900 chr2B 90.635 1196 71 16 645 1823 63140259 63141430 0.000000e+00 1550.0
16 TraesCS2D01G084900 chr2B 92.213 488 37 1 1 487 63139773 63140260 0.000000e+00 689.0
17 TraesCS2D01G084900 chr2B 79.219 640 89 22 1074 1682 63260770 63261396 3.040000e-109 405.0
18 TraesCS2D01G084900 chr2B 92.558 215 13 2 2157 2368 63172018 63172232 3.170000e-79 305.0
19 TraesCS2D01G084900 chr2B 91.566 166 13 1 484 648 312294657 312294492 7.060000e-56 228.0
20 TraesCS2D01G084900 chr2B 88.125 160 14 5 279 435 71729087 71729244 4.310000e-43 185.0
21 TraesCS2D01G084900 chr2B 86.585 164 18 4 275 435 484125107 484125269 7.210000e-41 178.0
22 TraesCS2D01G084900 chr2B 97.087 103 2 1 2364 2465 63172292 63172394 3.360000e-39 172.0
23 TraesCS2D01G084900 chrUn 98.204 167 3 0 1996 2162 27673864 27673698 2.470000e-75 292.0
24 TraesCS2D01G084900 chr4D 98.204 167 3 0 1996 2162 436812937 436813103 2.470000e-75 292.0
25 TraesCS2D01G084900 chr4D 97.605 167 4 0 1996 2162 418827455 418827621 1.150000e-73 287.0
26 TraesCS2D01G084900 chr4D 91.617 167 13 1 482 647 230542546 230542712 1.960000e-56 230.0
27 TraesCS2D01G084900 chr4D 84.286 70 4 7 121 186 401695201 401695267 7.580000e-06 62.1
28 TraesCS2D01G084900 chr7D 97.605 167 4 0 1996 2162 52450095 52449929 1.150000e-73 287.0
29 TraesCS2D01G084900 chr7D 97.605 167 4 0 1996 2162 59252937 59253103 1.150000e-73 287.0
30 TraesCS2D01G084900 chr7D 97.605 167 4 0 1996 2162 616575623 616575789 1.150000e-73 287.0
31 TraesCS2D01G084900 chr7D 84.286 70 8 3 137 203 97278037 97277968 5.860000e-07 65.8
32 TraesCS2D01G084900 chr7D 97.059 34 1 0 657 690 63651551 63651518 9.800000e-05 58.4
33 TraesCS2D01G084900 chr6D 97.605 167 4 0 1996 2162 91173704 91173538 1.150000e-73 287.0
34 TraesCS2D01G084900 chr5D 97.605 167 4 0 1996 2162 48501358 48501192 1.150000e-73 287.0
35 TraesCS2D01G084900 chr5D 97.605 167 4 0 1996 2162 346007632 346007798 1.150000e-73 287.0
36 TraesCS2D01G084900 chr5D 91.617 167 13 1 483 648 343243329 343243163 1.960000e-56 230.0
37 TraesCS2D01G084900 chr5D 97.778 45 1 0 442 486 421658069 421658113 7.520000e-11 78.7
38 TraesCS2D01G084900 chr5B 93.252 163 10 1 486 647 507193369 507193207 3.260000e-59 239.0
39 TraesCS2D01G084900 chr5B 97.727 44 1 0 443 486 345125840 345125797 2.710000e-10 76.8
40 TraesCS2D01G084900 chr5B 95.556 45 2 0 442 486 633986431 633986475 3.500000e-09 73.1
41 TraesCS2D01G084900 chr3D 92.262 168 12 1 486 652 507038581 507038748 1.170000e-58 237.0
42 TraesCS2D01G084900 chr3D 90.173 173 16 1 476 647 410670053 410670225 9.130000e-55 224.0
43 TraesCS2D01G084900 chr7A 91.124 169 13 2 486 653 206712118 206711951 7.060000e-56 228.0
44 TraesCS2D01G084900 chr5A 88.050 159 15 3 279 435 444905234 444905390 4.310000e-43 185.0
45 TraesCS2D01G084900 chr7B 85.799 169 19 5 269 435 716441506 716441671 9.330000e-40 174.0
46 TraesCS2D01G084900 chr1A 85.714 168 18 5 271 435 70900611 70900447 3.360000e-39 172.0
47 TraesCS2D01G084900 chr4A 84.066 182 21 7 260 435 84531550 84531371 4.340000e-38 169.0
48 TraesCS2D01G084900 chr4A 90.909 55 2 3 134 187 223672324 223672376 1.260000e-08 71.3
49 TraesCS2D01G084900 chr4A 90.385 52 5 0 435 486 737099620 737099671 4.530000e-08 69.4
50 TraesCS2D01G084900 chr6B 97.778 45 1 0 442 486 24715691 24715735 7.520000e-11 78.7
51 TraesCS2D01G084900 chr3A 94.231 52 1 2 134 184 623528310 623528360 7.520000e-11 78.7
52 TraesCS2D01G084900 chr3A 86.364 66 5 4 134 197 279250667 279250604 4.530000e-08 69.4
53 TraesCS2D01G084900 chr3A 84.848 66 6 4 134 197 279201296 279201233 2.110000e-06 63.9
54 TraesCS2D01G084900 chr1D 91.071 56 5 0 431 486 378289321 378289376 2.710000e-10 76.8
55 TraesCS2D01G084900 chr1D 95.556 45 2 0 442 486 483526152 483526196 3.500000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G084900 chr2D 36770092 36772628 2536 False 4686.0 4686 100.0000 1 2537 1 chr2D.!!$F2 2536
1 TraesCS2D01G084900 chr2D 36779224 36781395 2171 False 718.0 1085 86.4770 745 2465 2 chr2D.!!$F4 1720
2 TraesCS2D01G084900 chr2D 36751153 36751668 515 False 278.0 278 77.6740 1033 1530 1 chr2D.!!$F1 497
3 TraesCS2D01G084900 chr2A 41169999 41171483 1484 False 1135.0 1784 94.0540 778 2465 2 chr2A.!!$F5 1687
4 TraesCS2D01G084900 chr2A 41158504 41159381 877 False 446.5 682 93.8815 1 776 2 chr2A.!!$F4 775
5 TraesCS2D01G084900 chr2A 41103432 41103947 515 False 278.0 278 77.6740 1033 1530 1 chr2A.!!$F1 497
6 TraesCS2D01G084900 chr2B 63139773 63141430 1657 False 1119.5 1550 91.4240 1 1823 2 chr2B.!!$F4 1822
7 TraesCS2D01G084900 chr2B 63260770 63261396 626 False 405.0 405 79.2190 1074 1682 1 chr2B.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.399233 GGGACAGGGTATCCTCAGCT 60.399 60.0 0.0 0.0 42.67 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 2992 0.247185 CGGCCCCACTCGTTTTAGTA 59.753 55.0 0.0 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 190 7.759489 ATGTGCTAGTTATTTGAAAAGGTGA 57.241 32.000 0.00 0.00 0.00 4.02
194 195 7.719633 TGCTAGTTATTTGAAAAGGTGAGAAGT 59.280 33.333 0.00 0.00 0.00 3.01
218 219 5.879223 TGTTCCTTACAACAAAAACGACCTA 59.121 36.000 0.00 0.00 33.21 3.08
241 242 1.493022 ACATGGCCCACGGTGTTATAT 59.507 47.619 7.45 0.00 0.00 0.86
242 243 1.879380 CATGGCCCACGGTGTTATATG 59.121 52.381 7.45 3.32 0.00 1.78
320 321 2.090663 GGTTAGAGGGACAGGGTATCCT 60.091 54.545 0.00 0.00 46.26 3.24
325 326 0.399233 GGGACAGGGTATCCTCAGCT 60.399 60.000 0.00 0.00 42.67 4.24
326 327 1.133136 GGGACAGGGTATCCTCAGCTA 60.133 57.143 0.00 0.00 42.67 3.32
364 366 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
369 371 4.736793 GTGCTCGCATTATTCCTGAATTTG 59.263 41.667 0.00 0.00 32.50 2.32
429 431 4.163078 AGACTTTCCCATTGATGACGAGAT 59.837 41.667 0.00 0.00 0.00 2.75
435 437 3.307269 CCCATTGATGACGAGATGCCTAT 60.307 47.826 0.00 0.00 0.00 2.57
439 441 5.529581 TTGATGACGAGATGCCTATACAA 57.470 39.130 0.00 0.00 0.00 2.41
440 442 5.529581 TGATGACGAGATGCCTATACAAA 57.470 39.130 0.00 0.00 0.00 2.83
444 446 6.650427 TGACGAGATGCCTATACAAACTAT 57.350 37.500 0.00 0.00 0.00 2.12
445 447 7.050970 TGACGAGATGCCTATACAAACTATT 57.949 36.000 0.00 0.00 0.00 1.73
480 482 1.876799 CGAGAGACTGAGCCGACATAT 59.123 52.381 0.00 0.00 0.00 1.78
481 483 2.095969 CGAGAGACTGAGCCGACATATC 60.096 54.545 0.00 0.00 0.00 1.63
482 484 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
483 485 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
484 486 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
485 487 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
486 488 4.657013 AGACTGAGCCGACATATCATCTA 58.343 43.478 0.00 0.00 0.00 1.98
496 498 4.337145 GACATATCATCTACTCCCTCCGT 58.663 47.826 0.00 0.00 0.00 4.69
501 503 2.781757 TCATCTACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
502 504 3.203710 TCATCTACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
503 505 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
506 508 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
507 509 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
508 510 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
509 511 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
510 512 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
512 514 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
514 516 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
515 517 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
516 518 7.041984 CCTCCGTTCCTAAATATAAGTCTTTGC 60.042 40.741 0.00 0.00 0.00 3.68
518 662 7.494625 TCCGTTCCTAAATATAAGTCTTTGCAG 59.505 37.037 0.00 0.00 0.00 4.41
521 665 9.601217 GTTCCTAAATATAAGTCTTTGCAGAGA 57.399 33.333 2.15 2.15 0.00 3.10
566 710 8.417106 ACGGATGTATATAGATGCATTTAGAGG 58.583 37.037 11.19 0.00 38.38 3.69
567 711 7.869937 CGGATGTATATAGATGCATTTAGAGGG 59.130 40.741 11.19 0.00 38.38 4.30
568 712 8.709308 GGATGTATATAGATGCATTTAGAGGGT 58.291 37.037 0.00 0.00 38.38 4.34
571 715 9.990868 TGTATATAGATGCATTTAGAGGGTAGA 57.009 33.333 0.00 0.00 0.00 2.59
575 719 6.753913 AGATGCATTTAGAGGGTAGATTCA 57.246 37.500 0.00 0.00 0.00 2.57
576 720 6.529220 AGATGCATTTAGAGGGTAGATTCAC 58.471 40.000 0.00 0.00 0.00 3.18
578 722 5.918608 TGCATTTAGAGGGTAGATTCACTC 58.081 41.667 0.00 0.00 38.06 3.51
579 723 5.425217 TGCATTTAGAGGGTAGATTCACTCA 59.575 40.000 0.00 0.00 40.03 3.41
580 724 6.100279 TGCATTTAGAGGGTAGATTCACTCAT 59.900 38.462 0.00 0.00 40.03 2.90
581 725 6.995091 GCATTTAGAGGGTAGATTCACTCATT 59.005 38.462 0.00 0.00 40.03 2.57
582 726 7.500559 GCATTTAGAGGGTAGATTCACTCATTT 59.499 37.037 0.00 0.00 40.03 2.32
583 727 9.401058 CATTTAGAGGGTAGATTCACTCATTTT 57.599 33.333 0.00 0.00 40.03 1.82
585 729 9.886132 TTTAGAGGGTAGATTCACTCATTTTAC 57.114 33.333 0.00 0.00 40.03 2.01
586 730 7.741554 AGAGGGTAGATTCACTCATTTTACT 57.258 36.000 0.00 0.00 40.03 2.24
587 731 8.152023 AGAGGGTAGATTCACTCATTTTACTT 57.848 34.615 0.00 0.00 40.03 2.24
588 732 8.261522 AGAGGGTAGATTCACTCATTTTACTTC 58.738 37.037 0.00 0.00 40.03 3.01
589 733 7.042335 AGGGTAGATTCACTCATTTTACTTCG 58.958 38.462 0.00 0.00 0.00 3.79
590 734 6.817140 GGGTAGATTCACTCATTTTACTTCGT 59.183 38.462 0.00 0.00 0.00 3.85
591 735 7.977853 GGGTAGATTCACTCATTTTACTTCGTA 59.022 37.037 0.00 0.00 0.00 3.43
592 736 9.530633 GGTAGATTCACTCATTTTACTTCGTAT 57.469 33.333 0.00 0.00 0.00 3.06
595 739 8.873830 AGATTCACTCATTTTACTTCGTATGTG 58.126 33.333 0.00 0.00 0.00 3.21
596 740 6.961359 TCACTCATTTTACTTCGTATGTGG 57.039 37.500 0.00 0.00 0.00 4.17
597 741 6.460781 TCACTCATTTTACTTCGTATGTGGT 58.539 36.000 0.00 0.00 0.00 4.16
598 742 6.588756 TCACTCATTTTACTTCGTATGTGGTC 59.411 38.462 0.00 0.00 0.00 4.02
599 743 5.873164 ACTCATTTTACTTCGTATGTGGTCC 59.127 40.000 0.00 0.00 0.00 4.46
600 744 5.795972 TCATTTTACTTCGTATGTGGTCCA 58.204 37.500 0.00 0.00 0.00 4.02
601 745 6.411376 TCATTTTACTTCGTATGTGGTCCAT 58.589 36.000 0.00 0.00 37.58 3.41
602 746 7.557724 TCATTTTACTTCGTATGTGGTCCATA 58.442 34.615 0.00 0.00 34.86 2.74
603 747 7.709182 TCATTTTACTTCGTATGTGGTCCATAG 59.291 37.037 0.00 0.00 36.71 2.23
604 748 6.534475 TTTACTTCGTATGTGGTCCATAGT 57.466 37.500 0.00 0.00 36.71 2.12
605 749 4.386867 ACTTCGTATGTGGTCCATAGTG 57.613 45.455 0.00 0.00 36.71 2.74
606 750 4.021229 ACTTCGTATGTGGTCCATAGTGA 58.979 43.478 0.00 0.00 36.71 3.41
607 751 4.464951 ACTTCGTATGTGGTCCATAGTGAA 59.535 41.667 0.00 0.00 36.71 3.18
608 752 5.046878 ACTTCGTATGTGGTCCATAGTGAAA 60.047 40.000 0.00 0.00 36.71 2.69
609 753 5.607939 TCGTATGTGGTCCATAGTGAAAT 57.392 39.130 0.00 0.00 36.71 2.17
610 754 5.597806 TCGTATGTGGTCCATAGTGAAATC 58.402 41.667 0.00 0.00 36.71 2.17
611 755 5.362717 TCGTATGTGGTCCATAGTGAAATCT 59.637 40.000 0.00 0.00 36.71 2.40
612 756 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
613 757 4.487714 TGTGGTCCATAGTGAAATCTCC 57.512 45.455 0.00 0.00 0.00 3.71
614 758 3.199946 TGTGGTCCATAGTGAAATCTCCC 59.800 47.826 0.00 0.00 0.00 4.30
615 759 2.777692 TGGTCCATAGTGAAATCTCCCC 59.222 50.000 0.00 0.00 0.00 4.81
616 760 2.777692 GGTCCATAGTGAAATCTCCCCA 59.222 50.000 0.00 0.00 0.00 4.96
617 761 3.202151 GGTCCATAGTGAAATCTCCCCAA 59.798 47.826 0.00 0.00 0.00 4.12
618 762 4.325030 GGTCCATAGTGAAATCTCCCCAAA 60.325 45.833 0.00 0.00 0.00 3.28
619 763 5.261216 GTCCATAGTGAAATCTCCCCAAAA 58.739 41.667 0.00 0.00 0.00 2.44
620 764 5.714806 GTCCATAGTGAAATCTCCCCAAAAA 59.285 40.000 0.00 0.00 0.00 1.94
621 765 5.714806 TCCATAGTGAAATCTCCCCAAAAAC 59.285 40.000 0.00 0.00 0.00 2.43
622 766 5.716703 CCATAGTGAAATCTCCCCAAAAACT 59.283 40.000 0.00 0.00 0.00 2.66
623 767 6.211384 CCATAGTGAAATCTCCCCAAAAACTT 59.789 38.462 0.00 0.00 0.00 2.66
624 768 7.396055 CCATAGTGAAATCTCCCCAAAAACTTA 59.604 37.037 0.00 0.00 0.00 2.24
625 769 8.971073 CATAGTGAAATCTCCCCAAAAACTTAT 58.029 33.333 0.00 0.00 0.00 1.73
628 772 9.547279 AGTGAAATCTCCCCAAAAACTTATATT 57.453 29.630 0.00 0.00 0.00 1.28
688 839 1.818674 GCACCATGACTTAAACCCTGG 59.181 52.381 0.00 0.00 0.00 4.45
696 847 3.456644 TGACTTAAACCCTGGTGAACTGA 59.543 43.478 0.00 0.00 0.00 3.41
706 857 3.753272 CCTGGTGAACTGAAATACCACTG 59.247 47.826 0.00 0.00 38.23 3.66
717 868 7.690256 ACTGAAATACCACTGTTCTCCTAATT 58.310 34.615 0.00 0.00 0.00 1.40
972 1130 4.344448 GCATCGATCCTACTAGAATACGC 58.656 47.826 0.00 0.00 0.00 4.42
1054 1227 2.615465 CCCTGGGATGACCTGCCAA 61.615 63.158 7.01 0.00 45.89 4.52
1350 1554 1.284657 CCGAGTACGAGTTCGCTCTA 58.715 55.000 0.73 0.00 44.43 2.43
1491 1701 0.771755 GTTCCAGGTTCCTCAAGGGT 59.228 55.000 0.00 0.00 36.25 4.34
1500 1710 0.397941 TCCTCAAGGGTGACTGCTTG 59.602 55.000 0.00 0.00 36.25 4.01
1534 1744 2.114625 TCACCGTCGTCCAGGTCT 59.885 61.111 0.00 0.00 39.00 3.85
1543 1753 0.034380 CGTCCAGGTCTAGGAGTGGA 60.034 60.000 4.32 4.32 36.72 4.02
1575 1794 3.768922 GCGAGGCCTGCTGAGACT 61.769 66.667 12.00 0.00 0.00 3.24
1576 1795 2.183811 CGAGGCCTGCTGAGACTG 59.816 66.667 12.00 0.00 0.00 3.51
1577 1796 2.346541 CGAGGCCTGCTGAGACTGA 61.347 63.158 12.00 0.00 0.00 3.41
1578 1797 1.516892 GAGGCCTGCTGAGACTGAG 59.483 63.158 12.00 0.00 0.00 3.35
1579 1798 0.969917 GAGGCCTGCTGAGACTGAGA 60.970 60.000 12.00 0.00 0.00 3.27
1580 1799 1.217779 GGCCTGCTGAGACTGAGAC 59.782 63.158 0.00 0.00 0.00 3.36
1581 1800 1.217779 GCCTGCTGAGACTGAGACC 59.782 63.158 0.00 0.00 0.00 3.85
1582 1801 1.539560 GCCTGCTGAGACTGAGACCA 61.540 60.000 0.00 0.00 0.00 4.02
1583 1802 0.246086 CCTGCTGAGACTGAGACCAC 59.754 60.000 0.00 0.00 0.00 4.16
1604 1823 1.202114 CGCTTGGAAGGCATTTGCTAA 59.798 47.619 2.12 0.00 41.70 3.09
1625 1857 7.342026 TGCTAAGTTCTGTGGTTAGATAGATGA 59.658 37.037 0.00 0.00 0.00 2.92
1659 1891 3.870419 TGTTTTTGGCTCTTGCATGTTTC 59.130 39.130 0.00 0.00 41.91 2.78
1712 1944 8.684386 TTCTTGTTTCATCATGTTTACCAGTA 57.316 30.769 0.00 0.00 0.00 2.74
1713 1945 8.322906 TCTTGTTTCATCATGTTTACCAGTAG 57.677 34.615 0.00 0.00 0.00 2.57
1714 1946 7.936847 TCTTGTTTCATCATGTTTACCAGTAGT 59.063 33.333 0.00 0.00 0.00 2.73
1911 2819 9.981460 ACCAATAGTTTAGAAGAAAATGATCCT 57.019 29.630 0.00 0.00 0.00 3.24
1920 2828 7.210618 AGAAGAAAATGATCCTCCTCTCATT 57.789 36.000 0.00 0.00 42.41 2.57
1942 2850 2.973899 CTCCTCCCAGGTGACACG 59.026 66.667 0.00 0.00 36.53 4.49
1966 2874 3.861276 GGGAAACCGAAAACCCTAATG 57.139 47.619 0.00 0.00 43.64 1.90
1967 2875 2.094390 GGGAAACCGAAAACCCTAATGC 60.094 50.000 0.00 0.00 43.64 3.56
1968 2876 2.414957 GGAAACCGAAAACCCTAATGCG 60.415 50.000 0.00 0.00 0.00 4.73
1969 2877 1.170442 AACCGAAAACCCTAATGCGG 58.830 50.000 0.00 0.00 43.95 5.69
1970 2878 1.310216 ACCGAAAACCCTAATGCGGC 61.310 55.000 0.00 0.00 42.25 6.53
1971 2879 1.431845 CGAAAACCCTAATGCGGCC 59.568 57.895 0.00 0.00 0.00 6.13
1972 2880 1.309499 CGAAAACCCTAATGCGGCCA 61.309 55.000 2.24 0.00 0.00 5.36
1973 2881 0.172578 GAAAACCCTAATGCGGCCAC 59.827 55.000 2.24 0.00 0.00 5.01
1974 2882 0.251608 AAAACCCTAATGCGGCCACT 60.252 50.000 2.24 0.00 0.00 4.00
1975 2883 0.965363 AAACCCTAATGCGGCCACTG 60.965 55.000 2.24 0.00 0.00 3.66
1976 2884 3.211963 CCCTAATGCGGCCACTGC 61.212 66.667 2.24 0.00 0.00 4.40
1986 2894 2.594592 GCCACTGCCGTTGGTCTT 60.595 61.111 0.00 0.00 0.00 3.01
1987 2895 2.617274 GCCACTGCCGTTGGTCTTC 61.617 63.158 0.00 0.00 0.00 2.87
1988 2896 1.227823 CCACTGCCGTTGGTCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
1989 2897 1.507141 CCACTGCCGTTGGTCTTCAC 61.507 60.000 0.00 0.00 0.00 3.18
1990 2898 1.227853 ACTGCCGTTGGTCTTCACC 60.228 57.895 0.00 0.00 44.10 4.02
1997 2905 2.825982 TGGTCTTCACCACGGTGG 59.174 61.111 25.21 25.21 46.63 4.61
1998 2906 2.032071 GGTCTTCACCACGGTGGG 59.968 66.667 29.44 18.51 43.37 4.61
1999 2907 2.668550 GTCTTCACCACGGTGGGC 60.669 66.667 29.44 9.64 43.37 5.36
2000 2908 2.847234 TCTTCACCACGGTGGGCT 60.847 61.111 29.44 8.32 43.37 5.19
2001 2909 2.113139 CTTCACCACGGTGGGCTT 59.887 61.111 29.44 7.55 43.37 4.35
2002 2910 1.528309 CTTCACCACGGTGGGCTTT 60.528 57.895 29.44 7.16 43.37 3.51
2003 2911 1.076632 TTCACCACGGTGGGCTTTT 60.077 52.632 29.44 6.77 43.37 2.27
2004 2912 0.684805 TTCACCACGGTGGGCTTTTT 60.685 50.000 29.44 6.00 43.37 1.94
2023 2931 5.738118 TTTTTAGAACCGTTCGTTGATGT 57.262 34.783 5.62 0.00 33.74 3.06
2024 2932 4.977741 TTTAGAACCGTTCGTTGATGTC 57.022 40.909 5.62 0.00 33.74 3.06
2025 2933 1.415374 AGAACCGTTCGTTGATGTCG 58.585 50.000 5.62 0.00 33.74 4.35
2026 2934 1.001048 AGAACCGTTCGTTGATGTCGA 60.001 47.619 5.62 0.00 33.74 4.20
2027 2935 1.990563 GAACCGTTCGTTGATGTCGAT 59.009 47.619 0.00 0.00 37.18 3.59
2028 2936 1.625616 ACCGTTCGTTGATGTCGATC 58.374 50.000 0.00 0.00 37.18 3.69
2029 2937 1.201647 ACCGTTCGTTGATGTCGATCT 59.798 47.619 0.00 0.00 37.18 2.75
2030 2938 2.421073 ACCGTTCGTTGATGTCGATCTA 59.579 45.455 0.00 0.00 37.18 1.98
2031 2939 3.119743 ACCGTTCGTTGATGTCGATCTAA 60.120 43.478 0.00 0.00 37.18 2.10
2032 2940 3.239941 CCGTTCGTTGATGTCGATCTAAC 59.760 47.826 0.00 0.00 37.18 2.34
2033 2941 3.062707 CGTTCGTTGATGTCGATCTAACG 60.063 47.826 16.02 16.02 40.55 3.18
2034 2942 3.060978 TCGTTGATGTCGATCTAACGG 57.939 47.619 19.50 7.98 40.13 4.44
2035 2943 1.517276 CGTTGATGTCGATCTAACGGC 59.483 52.381 14.97 0.00 38.30 5.68
2040 2948 1.170442 TGTCGATCTAACGGCAGACA 58.830 50.000 0.00 0.00 42.82 3.41
2041 2949 1.542472 TGTCGATCTAACGGCAGACAA 59.458 47.619 0.00 0.00 42.82 3.18
2042 2950 2.029739 TGTCGATCTAACGGCAGACAAA 60.030 45.455 0.00 0.00 42.82 2.83
2043 2951 3.187700 GTCGATCTAACGGCAGACAAAT 58.812 45.455 0.00 0.00 37.83 2.32
2044 2952 4.142337 TGTCGATCTAACGGCAGACAAATA 60.142 41.667 0.00 0.00 42.82 1.40
2045 2953 4.206609 GTCGATCTAACGGCAGACAAATAC 59.793 45.833 0.00 0.00 37.83 1.89
2046 2954 3.179795 CGATCTAACGGCAGACAAATACG 59.820 47.826 0.00 0.00 0.00 3.06
2047 2955 3.853831 TCTAACGGCAGACAAATACGA 57.146 42.857 0.00 0.00 0.00 3.43
2048 2956 4.177165 TCTAACGGCAGACAAATACGAA 57.823 40.909 0.00 0.00 0.00 3.85
2049 2957 4.171005 TCTAACGGCAGACAAATACGAAG 58.829 43.478 0.00 0.00 0.00 3.79
2073 2981 5.776173 ACTGGATAGTACTCCGATGAAAG 57.224 43.478 0.00 0.00 38.21 2.62
2074 2982 5.202004 ACTGGATAGTACTCCGATGAAAGT 58.798 41.667 0.00 0.00 38.21 2.66
2075 2983 6.363065 ACTGGATAGTACTCCGATGAAAGTA 58.637 40.000 0.00 0.00 38.21 2.24
2076 2984 6.262720 ACTGGATAGTACTCCGATGAAAGTAC 59.737 42.308 0.00 4.85 45.30 2.73
2079 2987 3.141002 GTACTCCGATGAAAGTACGCA 57.859 47.619 0.00 0.00 38.72 5.24
2080 2988 2.736144 ACTCCGATGAAAGTACGCAA 57.264 45.000 0.00 0.00 0.00 4.85
2081 2989 3.034721 ACTCCGATGAAAGTACGCAAA 57.965 42.857 0.00 0.00 0.00 3.68
2082 2990 3.395639 ACTCCGATGAAAGTACGCAAAA 58.604 40.909 0.00 0.00 0.00 2.44
2083 2991 3.432252 ACTCCGATGAAAGTACGCAAAAG 59.568 43.478 0.00 0.00 0.00 2.27
2084 2992 3.395639 TCCGATGAAAGTACGCAAAAGT 58.604 40.909 0.00 0.00 0.00 2.66
2085 2993 4.558178 TCCGATGAAAGTACGCAAAAGTA 58.442 39.130 0.00 0.00 0.00 2.24
2086 2994 4.386652 TCCGATGAAAGTACGCAAAAGTAC 59.613 41.667 0.00 0.00 45.31 2.73
2096 3004 6.202815 GTACGCAAAAGTACTAAAACGAGT 57.797 37.500 13.22 4.49 42.58 4.18
2097 3005 5.074430 ACGCAAAAGTACTAAAACGAGTG 57.926 39.130 13.22 2.61 0.00 3.51
2098 3006 4.025480 ACGCAAAAGTACTAAAACGAGTGG 60.025 41.667 13.22 0.00 0.00 4.00
2099 3007 4.609783 CGCAAAAGTACTAAAACGAGTGGG 60.610 45.833 0.00 0.00 0.00 4.61
2100 3008 4.319984 GCAAAAGTACTAAAACGAGTGGGG 60.320 45.833 0.00 0.00 0.00 4.96
2101 3009 2.756840 AGTACTAAAACGAGTGGGGC 57.243 50.000 0.00 0.00 0.00 5.80
2102 3010 1.277273 AGTACTAAAACGAGTGGGGCC 59.723 52.381 0.00 0.00 0.00 5.80
2103 3011 0.247185 TACTAAAACGAGTGGGGCCG 59.753 55.000 0.00 0.00 0.00 6.13
2104 3012 1.743995 CTAAAACGAGTGGGGCCGG 60.744 63.158 0.00 0.00 0.00 6.13
2105 3013 2.459202 CTAAAACGAGTGGGGCCGGT 62.459 60.000 1.90 0.00 0.00 5.28
2106 3014 1.190833 TAAAACGAGTGGGGCCGGTA 61.191 55.000 1.90 0.00 0.00 4.02
2107 3015 2.736579 AAAACGAGTGGGGCCGGTAC 62.737 60.000 1.90 0.00 0.00 3.34
2108 3016 4.691359 ACGAGTGGGGCCGGTACT 62.691 66.667 1.90 6.45 0.00 2.73
2109 3017 3.834799 CGAGTGGGGCCGGTACTC 61.835 72.222 18.69 18.69 37.93 2.59
2110 3018 3.834799 GAGTGGGGCCGGTACTCG 61.835 72.222 15.38 0.00 32.48 4.18
2111 3019 4.691359 AGTGGGGCCGGTACTCGT 62.691 66.667 1.90 0.00 37.11 4.18
2112 3020 4.446413 GTGGGGCCGGTACTCGTG 62.446 72.222 1.90 0.00 37.11 4.35
2113 3021 4.682334 TGGGGCCGGTACTCGTGA 62.682 66.667 1.90 0.00 37.11 4.35
2114 3022 4.139234 GGGGCCGGTACTCGTGAC 62.139 72.222 1.90 0.00 37.11 3.67
2115 3023 3.376078 GGGCCGGTACTCGTGACA 61.376 66.667 1.90 0.00 37.11 3.58
2116 3024 2.652530 GGCCGGTACTCGTGACAA 59.347 61.111 1.90 0.00 37.11 3.18
2117 3025 1.445582 GGCCGGTACTCGTGACAAG 60.446 63.158 1.90 0.00 37.11 3.16
2118 3026 2.092882 GCCGGTACTCGTGACAAGC 61.093 63.158 1.90 0.00 37.11 4.01
2119 3027 1.585006 CCGGTACTCGTGACAAGCT 59.415 57.895 0.00 0.00 37.11 3.74
2120 3028 0.732880 CCGGTACTCGTGACAAGCTG 60.733 60.000 0.00 0.00 37.11 4.24
2121 3029 0.732880 CGGTACTCGTGACAAGCTGG 60.733 60.000 0.00 0.00 0.00 4.85
2122 3030 0.389948 GGTACTCGTGACAAGCTGGG 60.390 60.000 0.00 0.00 0.00 4.45
2123 3031 0.389948 GTACTCGTGACAAGCTGGGG 60.390 60.000 0.00 0.00 0.00 4.96
2124 3032 0.541063 TACTCGTGACAAGCTGGGGA 60.541 55.000 0.00 0.00 0.00 4.81
2125 3033 1.374758 CTCGTGACAAGCTGGGGAC 60.375 63.158 0.00 0.00 0.00 4.46
2126 3034 2.738521 CGTGACAAGCTGGGGACG 60.739 66.667 0.00 0.00 0.00 4.79
2127 3035 3.050275 GTGACAAGCTGGGGACGC 61.050 66.667 0.00 0.00 0.00 5.19
2128 3036 4.680237 TGACAAGCTGGGGACGCG 62.680 66.667 3.53 3.53 35.50 6.01
2129 3037 4.681978 GACAAGCTGGGGACGCGT 62.682 66.667 13.85 13.85 35.50 6.01
2130 3038 4.250305 ACAAGCTGGGGACGCGTT 62.250 61.111 15.53 0.00 35.50 4.84
2131 3039 2.978010 CAAGCTGGGGACGCGTTT 60.978 61.111 15.53 0.00 35.50 3.60
2132 3040 2.203294 AAGCTGGGGACGCGTTTT 60.203 55.556 15.53 0.00 35.50 2.43
2133 3041 1.071814 AAGCTGGGGACGCGTTTTA 59.928 52.632 15.53 0.00 35.50 1.52
2134 3042 0.535553 AAGCTGGGGACGCGTTTTAA 60.536 50.000 15.53 0.00 35.50 1.52
2135 3043 0.322187 AGCTGGGGACGCGTTTTAAT 60.322 50.000 15.53 0.00 35.50 1.40
2136 3044 1.065998 AGCTGGGGACGCGTTTTAATA 60.066 47.619 15.53 0.00 35.50 0.98
2137 3045 1.944709 GCTGGGGACGCGTTTTAATAT 59.055 47.619 15.53 0.00 0.00 1.28
2138 3046 3.132925 GCTGGGGACGCGTTTTAATATA 58.867 45.455 15.53 0.00 0.00 0.86
2139 3047 3.185797 GCTGGGGACGCGTTTTAATATAG 59.814 47.826 15.53 5.62 0.00 1.31
2140 3048 3.731089 TGGGGACGCGTTTTAATATAGG 58.269 45.455 15.53 0.00 0.00 2.57
2141 3049 3.069289 GGGGACGCGTTTTAATATAGGG 58.931 50.000 15.53 0.00 0.00 3.53
2142 3050 3.069289 GGGACGCGTTTTAATATAGGGG 58.931 50.000 15.53 0.00 0.00 4.79
2143 3051 2.481568 GGACGCGTTTTAATATAGGGGC 59.518 50.000 15.53 0.00 0.00 5.80
2144 3052 3.132925 GACGCGTTTTAATATAGGGGCA 58.867 45.455 15.53 0.00 0.00 5.36
2145 3053 3.135994 ACGCGTTTTAATATAGGGGCAG 58.864 45.455 5.58 0.00 0.00 4.85
2146 3054 3.135994 CGCGTTTTAATATAGGGGCAGT 58.864 45.455 0.00 0.00 0.00 4.40
2147 3055 3.562557 CGCGTTTTAATATAGGGGCAGTT 59.437 43.478 0.00 0.00 0.00 3.16
2148 3056 4.035909 CGCGTTTTAATATAGGGGCAGTTT 59.964 41.667 0.00 0.00 0.00 2.66
2149 3057 5.236911 CGCGTTTTAATATAGGGGCAGTTTA 59.763 40.000 0.00 0.00 0.00 2.01
2150 3058 6.565247 CGCGTTTTAATATAGGGGCAGTTTAG 60.565 42.308 0.00 0.00 0.00 1.85
2151 3059 6.261603 GCGTTTTAATATAGGGGCAGTTTAGT 59.738 38.462 0.00 0.00 0.00 2.24
2152 3060 7.519488 GCGTTTTAATATAGGGGCAGTTTAGTC 60.519 40.741 0.00 0.00 0.00 2.59
2153 3061 7.041576 CGTTTTAATATAGGGGCAGTTTAGTCC 60.042 40.741 0.00 0.00 0.00 3.85
2154 3062 7.701257 TTTAATATAGGGGCAGTTTAGTCCT 57.299 36.000 0.00 0.00 32.56 3.85
2155 3063 8.802057 TTTAATATAGGGGCAGTTTAGTCCTA 57.198 34.615 0.00 0.00 34.96 2.94
2156 3064 6.936968 AATATAGGGGCAGTTTAGTCCTAG 57.063 41.667 0.00 0.00 34.10 3.02
2157 3065 1.880941 AGGGGCAGTTTAGTCCTAGG 58.119 55.000 0.82 0.82 32.56 3.02
2158 3066 0.837940 GGGGCAGTTTAGTCCTAGGG 59.162 60.000 9.46 0.00 32.56 3.53
2159 3067 1.624391 GGGGCAGTTTAGTCCTAGGGA 60.624 57.143 9.46 0.00 32.56 4.20
2160 3068 2.193993 GGGCAGTTTAGTCCTAGGGAA 58.806 52.381 9.46 0.00 31.38 3.97
2161 3069 2.574824 GGGCAGTTTAGTCCTAGGGAAA 59.425 50.000 9.46 4.69 31.38 3.13
2162 3070 3.607741 GGCAGTTTAGTCCTAGGGAAAC 58.392 50.000 19.27 19.27 31.38 2.78
2198 3106 2.664851 CGCTGCCGTTGGTCTTCA 60.665 61.111 0.00 0.00 0.00 3.02
2306 3218 4.148825 GACTCATCAGCGGGGCGT 62.149 66.667 0.00 0.00 0.00 5.68
2446 3362 7.283329 GTTCATCCTCCCATAACAGAAATAGT 58.717 38.462 0.00 0.00 0.00 2.12
2490 3406 3.636282 TTTACGAAAGAAGGGCTTTGC 57.364 42.857 0.00 0.00 46.52 3.68
2491 3407 2.264005 TACGAAAGAAGGGCTTTGCA 57.736 45.000 0.00 0.00 46.52 4.08
2492 3408 0.668535 ACGAAAGAAGGGCTTTGCAC 59.331 50.000 0.00 0.00 46.52 4.57
2493 3409 0.039165 CGAAAGAAGGGCTTTGCACC 60.039 55.000 0.00 0.00 46.52 5.01
2494 3410 0.318441 GAAAGAAGGGCTTTGCACCC 59.682 55.000 2.55 2.55 46.52 4.61
2499 3415 2.203625 GGGCTTTGCACCCTTCCA 60.204 61.111 3.59 0.00 44.68 3.53
2500 3416 1.836604 GGGCTTTGCACCCTTCCAA 60.837 57.895 3.59 0.00 44.68 3.53
2501 3417 1.194121 GGGCTTTGCACCCTTCCAAT 61.194 55.000 3.59 0.00 44.68 3.16
2502 3418 0.686789 GGCTTTGCACCCTTCCAATT 59.313 50.000 0.00 0.00 0.00 2.32
2503 3419 1.072173 GGCTTTGCACCCTTCCAATTT 59.928 47.619 0.00 0.00 0.00 1.82
2504 3420 2.487086 GGCTTTGCACCCTTCCAATTTT 60.487 45.455 0.00 0.00 0.00 1.82
2505 3421 2.807967 GCTTTGCACCCTTCCAATTTTC 59.192 45.455 0.00 0.00 0.00 2.29
2506 3422 3.743899 GCTTTGCACCCTTCCAATTTTCA 60.744 43.478 0.00 0.00 0.00 2.69
2507 3423 4.644498 CTTTGCACCCTTCCAATTTTCAT 58.356 39.130 0.00 0.00 0.00 2.57
2508 3424 4.703379 TTGCACCCTTCCAATTTTCATT 57.297 36.364 0.00 0.00 0.00 2.57
2509 3425 5.815233 TTGCACCCTTCCAATTTTCATTA 57.185 34.783 0.00 0.00 0.00 1.90
2510 3426 5.815233 TGCACCCTTCCAATTTTCATTAA 57.185 34.783 0.00 0.00 0.00 1.40
2511 3427 6.371595 TGCACCCTTCCAATTTTCATTAAT 57.628 33.333 0.00 0.00 0.00 1.40
2512 3428 6.171921 TGCACCCTTCCAATTTTCATTAATG 58.828 36.000 9.29 9.29 0.00 1.90
2513 3429 6.013898 TGCACCCTTCCAATTTTCATTAATGA 60.014 34.615 14.23 14.23 34.44 2.57
2514 3430 6.878389 GCACCCTTCCAATTTTCATTAATGAA 59.122 34.615 23.86 23.86 44.42 2.57
2530 3446 9.402320 TCATTAATGAAAACCATAGAATTCGGA 57.598 29.630 15.82 0.00 34.45 4.55
2531 3447 9.669353 CATTAATGAAAACCATAGAATTCGGAG 57.331 33.333 10.04 0.00 34.45 4.63
2532 3448 5.757850 ATGAAAACCATAGAATTCGGAGC 57.242 39.130 5.02 0.00 32.72 4.70
2533 3449 4.843728 TGAAAACCATAGAATTCGGAGCT 58.156 39.130 5.02 0.00 0.00 4.09
2534 3450 5.984725 TGAAAACCATAGAATTCGGAGCTA 58.015 37.500 5.02 0.00 0.00 3.32
2535 3451 5.815740 TGAAAACCATAGAATTCGGAGCTAC 59.184 40.000 5.02 0.00 0.00 3.58
2536 3452 5.353394 AAACCATAGAATTCGGAGCTACA 57.647 39.130 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 6.285790 GTTGCAACGGAGAAATTTTGATTT 57.714 33.333 14.90 0.00 0.00 2.17
180 181 5.820947 TGTAAGGAACACTTCTCACCTTTTC 59.179 40.000 0.00 0.00 40.68 2.29
189 190 6.149807 TCGTTTTTGTTGTAAGGAACACTTCT 59.850 34.615 0.00 0.00 40.64 2.85
194 195 4.701171 AGGTCGTTTTTGTTGTAAGGAACA 59.299 37.500 0.00 0.00 35.88 3.18
218 219 2.597217 CACCGTGGGCCATGTGTT 60.597 61.111 23.64 5.51 0.00 3.32
241 242 4.215399 GGTTTGATGAGATTGTTTCCGTCA 59.785 41.667 0.00 0.00 0.00 4.35
242 243 4.215399 TGGTTTGATGAGATTGTTTCCGTC 59.785 41.667 0.00 0.00 0.00 4.79
320 321 4.134563 GACTTTTGAACCTGGTTAGCTGA 58.865 43.478 12.96 0.00 0.00 4.26
364 366 3.987220 CGCCGGAAATTCTGAAACAAATT 59.013 39.130 5.05 0.00 0.00 1.82
369 371 2.785679 CATCGCCGGAAATTCTGAAAC 58.214 47.619 5.05 0.00 0.00 2.78
410 412 2.945008 GCATCTCGTCATCAATGGGAAA 59.055 45.455 0.00 0.00 0.00 3.13
418 420 5.069119 AGTTTGTATAGGCATCTCGTCATCA 59.931 40.000 0.00 0.00 0.00 3.07
421 423 6.650427 ATAGTTTGTATAGGCATCTCGTCA 57.350 37.500 0.00 0.00 0.00 4.35
429 431 7.016170 TGCTCATAGGAATAGTTTGTATAGGCA 59.984 37.037 0.00 0.00 0.00 4.75
435 437 7.867909 CGAAGATGCTCATAGGAATAGTTTGTA 59.132 37.037 0.00 0.00 0.00 2.41
439 441 6.491745 TCTCGAAGATGCTCATAGGAATAGTT 59.508 38.462 0.00 0.00 33.89 2.24
440 442 6.007076 TCTCGAAGATGCTCATAGGAATAGT 58.993 40.000 0.00 0.00 33.89 2.12
444 446 4.277174 GTCTCTCGAAGATGCTCATAGGAA 59.723 45.833 0.00 0.00 36.11 3.36
445 447 3.818210 GTCTCTCGAAGATGCTCATAGGA 59.182 47.826 0.00 0.00 36.11 2.94
459 461 0.393132 ATGTCGGCTCAGTCTCTCGA 60.393 55.000 0.00 0.00 0.00 4.04
480 482 1.569548 AGGAACGGAGGGAGTAGATGA 59.430 52.381 0.00 0.00 0.00 2.92
481 483 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
482 484 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
483 485 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
484 486 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
485 487 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
486 488 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
540 684 8.417106 CCTCTAAATGCATCTATATACATCCGT 58.583 37.037 0.00 0.00 0.00 4.69
541 685 7.869937 CCCTCTAAATGCATCTATATACATCCG 59.130 40.741 0.00 0.00 0.00 4.18
542 686 8.709308 ACCCTCTAAATGCATCTATATACATCC 58.291 37.037 0.00 0.00 0.00 3.51
551 695 7.510685 AGTGAATCTACCCTCTAAATGCATCTA 59.489 37.037 0.00 0.00 0.00 1.98
554 698 6.100279 TGAGTGAATCTACCCTCTAAATGCAT 59.900 38.462 0.00 0.00 0.00 3.96
556 700 5.918608 TGAGTGAATCTACCCTCTAAATGC 58.081 41.667 0.00 0.00 0.00 3.56
557 701 8.970859 AAATGAGTGAATCTACCCTCTAAATG 57.029 34.615 0.00 0.00 0.00 2.32
559 703 9.886132 GTAAAATGAGTGAATCTACCCTCTAAA 57.114 33.333 0.00 0.00 0.00 1.85
562 706 7.741554 AGTAAAATGAGTGAATCTACCCTCT 57.258 36.000 0.00 0.00 0.00 3.69
563 707 7.222999 CGAAGTAAAATGAGTGAATCTACCCTC 59.777 40.741 0.00 0.00 0.00 4.30
564 708 7.042335 CGAAGTAAAATGAGTGAATCTACCCT 58.958 38.462 0.00 0.00 0.00 4.34
566 710 7.829378 ACGAAGTAAAATGAGTGAATCTACC 57.171 36.000 0.00 0.00 41.94 3.18
585 729 4.649088 TCACTATGGACCACATACGAAG 57.351 45.455 0.00 0.00 41.03 3.79
586 730 5.408880 TTTCACTATGGACCACATACGAA 57.591 39.130 0.00 0.00 41.03 3.85
587 731 5.362717 AGATTTCACTATGGACCACATACGA 59.637 40.000 0.00 0.00 41.03 3.43
588 732 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
589 733 5.992217 GGAGATTTCACTATGGACCACATAC 59.008 44.000 0.00 0.00 41.03 2.39
590 734 5.071788 GGGAGATTTCACTATGGACCACATA 59.928 44.000 0.00 0.00 41.03 2.29
591 735 4.141390 GGGAGATTTCACTATGGACCACAT 60.141 45.833 0.00 0.00 43.68 3.21
592 736 3.199946 GGGAGATTTCACTATGGACCACA 59.800 47.826 0.00 0.00 0.00 4.17
593 737 3.433740 GGGGAGATTTCACTATGGACCAC 60.434 52.174 0.00 0.00 0.00 4.16
594 738 2.777692 GGGGAGATTTCACTATGGACCA 59.222 50.000 0.00 0.00 0.00 4.02
595 739 2.777692 TGGGGAGATTTCACTATGGACC 59.222 50.000 0.00 0.00 0.00 4.46
596 740 4.503714 TTGGGGAGATTTCACTATGGAC 57.496 45.455 0.00 0.00 0.00 4.02
597 741 5.528600 TTTTGGGGAGATTTCACTATGGA 57.471 39.130 0.00 0.00 0.00 3.41
598 742 5.716703 AGTTTTTGGGGAGATTTCACTATGG 59.283 40.000 0.00 0.00 0.00 2.74
599 743 6.840780 AGTTTTTGGGGAGATTTCACTATG 57.159 37.500 0.00 0.00 0.00 2.23
602 746 9.547279 AATATAAGTTTTTGGGGAGATTTCACT 57.453 29.630 0.00 0.00 0.00 3.41
609 753 9.470399 GTTCCTAAATATAAGTTTTTGGGGAGA 57.530 33.333 2.23 0.00 35.03 3.71
610 754 8.403236 CGTTCCTAAATATAAGTTTTTGGGGAG 58.597 37.037 2.23 0.00 35.03 4.30
611 755 7.339976 CCGTTCCTAAATATAAGTTTTTGGGGA 59.660 37.037 2.23 0.00 35.03 4.81
612 756 7.339976 TCCGTTCCTAAATATAAGTTTTTGGGG 59.660 37.037 2.23 0.00 35.03 4.96
613 757 8.283699 TCCGTTCCTAAATATAAGTTTTTGGG 57.716 34.615 0.00 0.00 35.45 4.12
614 758 8.403236 CCTCCGTTCCTAAATATAAGTTTTTGG 58.597 37.037 0.00 0.00 32.43 3.28
615 759 8.403236 CCCTCCGTTCCTAAATATAAGTTTTTG 58.597 37.037 0.00 0.00 0.00 2.44
616 760 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
617 761 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
618 762 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
619 763 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
620 764 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
621 765 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
622 766 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
623 767 7.017950 TCTCTACTCCCTCCGTTCCTAAATATA 59.982 40.741 0.00 0.00 0.00 0.86
624 768 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
625 769 5.133322 TCTCTACTCCCTCCGTTCCTAAATA 59.867 44.000 0.00 0.00 0.00 1.40
626 770 4.079327 TCTCTACTCCCTCCGTTCCTAAAT 60.079 45.833 0.00 0.00 0.00 1.40
627 771 3.267812 TCTCTACTCCCTCCGTTCCTAAA 59.732 47.826 0.00 0.00 0.00 1.85
628 772 2.848694 TCTCTACTCCCTCCGTTCCTAA 59.151 50.000 0.00 0.00 0.00 2.69
629 773 2.485659 TCTCTACTCCCTCCGTTCCTA 58.514 52.381 0.00 0.00 0.00 2.94
634 778 3.631227 CGTAAAATCTCTACTCCCTCCGT 59.369 47.826 0.00 0.00 0.00 4.69
688 839 5.179555 GGAGAACAGTGGTATTTCAGTTCAC 59.820 44.000 0.00 0.00 38.18 3.18
706 857 7.630924 CGATGTGGTTGAATAATTAGGAGAAC 58.369 38.462 0.00 0.00 0.00 3.01
717 868 5.185454 AGATCTTTGCGATGTGGTTGAATA 58.815 37.500 0.00 0.00 30.84 1.75
972 1130 3.853330 CGATGGGAACGCTGCGTG 61.853 66.667 29.63 10.33 39.99 5.34
1040 1213 3.530067 GCATTGGCAGGTCATCCC 58.470 61.111 0.00 0.00 40.72 3.85
1054 1227 3.814268 GGCATCCGCGTGTTGCAT 61.814 61.111 22.94 0.00 46.97 3.96
1350 1554 2.515901 GTCCCTTGGTGGTGCACT 59.484 61.111 17.98 0.00 34.40 4.40
1410 1620 1.896660 GTTGCCCTTGTCGAAGGCA 60.897 57.895 13.86 13.86 46.89 4.75
1581 1800 0.388907 CAAATGCCTTCCAAGCGGTG 60.389 55.000 0.00 0.00 0.00 4.94
1582 1801 1.966762 CAAATGCCTTCCAAGCGGT 59.033 52.632 0.00 0.00 0.00 5.68
1583 1802 1.446618 GCAAATGCCTTCCAAGCGG 60.447 57.895 0.00 0.00 34.31 5.52
1596 1815 8.540388 TCTATCTAACCACAGAACTTAGCAAAT 58.460 33.333 0.00 0.00 0.00 2.32
1604 1823 5.896678 AGCTCATCTATCTAACCACAGAACT 59.103 40.000 0.00 0.00 0.00 3.01
1625 1857 2.355444 GCCAAAAACATTGCAACAAGCT 59.645 40.909 0.00 0.00 45.94 3.74
1659 1891 9.485591 AATTAGTAACGCATTACAATTTTCTCG 57.514 29.630 5.37 0.00 42.83 4.04
1712 1944 8.682710 TGAGCAAAAAGTATTGTAAGAAACACT 58.317 29.630 0.00 0.00 38.00 3.55
1713 1945 8.850454 TGAGCAAAAAGTATTGTAAGAAACAC 57.150 30.769 0.00 0.00 38.00 3.32
1714 1946 9.677567 GATGAGCAAAAAGTATTGTAAGAAACA 57.322 29.630 0.00 0.00 35.88 2.83
1835 2645 4.574674 ATCTGTCCCTTTTGCAGATGTA 57.425 40.909 5.60 0.00 45.09 2.29
1836 2646 2.957402 TCTGTCCCTTTTGCAGATGT 57.043 45.000 0.00 0.00 34.72 3.06
1911 2819 2.975489 GGGAGGAGCAATAATGAGAGGA 59.025 50.000 0.00 0.00 0.00 3.71
1920 2828 1.204146 GTCACCTGGGAGGAGCAATA 58.796 55.000 0.00 0.00 37.67 1.90
1942 2850 0.963962 GGGTTTTCGGTTTCCCCTTC 59.036 55.000 0.00 0.00 34.32 3.46
1969 2877 2.594592 AAGACCAACGGCAGTGGC 60.595 61.111 6.62 6.62 40.13 5.01
1970 2878 1.227823 TGAAGACCAACGGCAGTGG 60.228 57.895 2.00 2.00 0.00 4.00
1971 2879 1.507141 GGTGAAGACCAACGGCAGTG 61.507 60.000 0.00 0.00 42.59 3.66
1972 2880 1.227853 GGTGAAGACCAACGGCAGT 60.228 57.895 0.00 0.00 42.59 4.40
1973 2881 3.655481 GGTGAAGACCAACGGCAG 58.345 61.111 0.00 0.00 42.59 4.85
1987 2895 3.532501 AAAAAGCCCACCGTGGTG 58.467 55.556 16.55 12.17 45.02 4.17
2001 2909 5.556758 CGACATCAACGAACGGTTCTAAAAA 60.557 40.000 17.94 1.59 36.49 1.94
2002 2910 4.084952 CGACATCAACGAACGGTTCTAAAA 60.085 41.667 17.94 2.89 36.49 1.52
2003 2911 3.426191 CGACATCAACGAACGGTTCTAAA 59.574 43.478 17.94 2.56 36.49 1.85
2004 2912 2.981805 CGACATCAACGAACGGTTCTAA 59.018 45.455 17.94 2.24 36.49 2.10
2005 2913 2.226200 TCGACATCAACGAACGGTTCTA 59.774 45.455 17.94 2.54 36.49 2.10
2006 2914 1.001048 TCGACATCAACGAACGGTTCT 60.001 47.619 17.94 3.54 36.49 3.01
2007 2915 1.411394 TCGACATCAACGAACGGTTC 58.589 50.000 10.83 10.83 36.49 3.62
2008 2916 1.990563 GATCGACATCAACGAACGGTT 59.009 47.619 0.00 0.00 42.80 4.44
2009 2917 1.201647 AGATCGACATCAACGAACGGT 59.798 47.619 0.00 0.00 42.80 4.83
2010 2918 1.909376 AGATCGACATCAACGAACGG 58.091 50.000 0.00 0.00 42.80 4.44
2011 2919 3.062707 CGTTAGATCGACATCAACGAACG 60.063 47.826 14.62 9.92 41.29 3.95
2012 2920 3.239941 CCGTTAGATCGACATCAACGAAC 59.760 47.826 19.06 0.00 41.29 3.95
2013 2921 3.431856 CCGTTAGATCGACATCAACGAA 58.568 45.455 19.06 0.00 41.29 3.85
2014 2922 2.793585 GCCGTTAGATCGACATCAACGA 60.794 50.000 19.06 0.00 41.29 3.85
2015 2923 1.517276 GCCGTTAGATCGACATCAACG 59.483 52.381 13.42 13.42 40.02 4.10
2016 2924 2.535984 CTGCCGTTAGATCGACATCAAC 59.464 50.000 0.00 0.00 0.00 3.18
2017 2925 2.425668 TCTGCCGTTAGATCGACATCAA 59.574 45.455 0.00 0.00 0.00 2.57
2018 2926 2.021457 TCTGCCGTTAGATCGACATCA 58.979 47.619 0.00 0.37 0.00 3.07
2019 2927 2.223502 TGTCTGCCGTTAGATCGACATC 60.224 50.000 0.00 0.00 0.00 3.06
2020 2928 1.749063 TGTCTGCCGTTAGATCGACAT 59.251 47.619 0.00 0.00 0.00 3.06
2021 2929 1.170442 TGTCTGCCGTTAGATCGACA 58.830 50.000 0.00 0.00 0.00 4.35
2022 2930 2.273370 TTGTCTGCCGTTAGATCGAC 57.727 50.000 0.00 0.00 0.00 4.20
2023 2931 3.520290 ATTTGTCTGCCGTTAGATCGA 57.480 42.857 0.00 0.00 0.00 3.59
2024 2932 3.179795 CGTATTTGTCTGCCGTTAGATCG 59.820 47.826 0.00 0.00 0.00 3.69
2025 2933 4.357142 TCGTATTTGTCTGCCGTTAGATC 58.643 43.478 0.00 0.00 0.00 2.75
2026 2934 4.380841 TCGTATTTGTCTGCCGTTAGAT 57.619 40.909 0.00 0.00 0.00 1.98
2027 2935 3.853831 TCGTATTTGTCTGCCGTTAGA 57.146 42.857 0.00 0.00 0.00 2.10
2028 2936 3.924686 ACTTCGTATTTGTCTGCCGTTAG 59.075 43.478 0.00 0.00 0.00 2.34
2029 2937 3.916761 ACTTCGTATTTGTCTGCCGTTA 58.083 40.909 0.00 0.00 0.00 3.18
2030 2938 2.762745 ACTTCGTATTTGTCTGCCGTT 58.237 42.857 0.00 0.00 0.00 4.44
2031 2939 2.450609 ACTTCGTATTTGTCTGCCGT 57.549 45.000 0.00 0.00 0.00 5.68
2032 2940 3.303495 CAGTACTTCGTATTTGTCTGCCG 59.697 47.826 0.00 0.00 0.00 5.69
2033 2941 3.617263 CCAGTACTTCGTATTTGTCTGCC 59.383 47.826 0.00 0.00 0.00 4.85
2034 2942 4.491676 TCCAGTACTTCGTATTTGTCTGC 58.508 43.478 0.00 0.00 0.00 4.26
2035 2943 7.481642 ACTATCCAGTACTTCGTATTTGTCTG 58.518 38.462 0.00 0.00 31.45 3.51
2036 2944 7.642082 ACTATCCAGTACTTCGTATTTGTCT 57.358 36.000 0.00 0.00 31.45 3.41
2050 2958 6.363065 ACTTTCATCGGAGTACTATCCAGTA 58.637 40.000 0.00 0.00 39.53 2.74
2051 2959 5.202004 ACTTTCATCGGAGTACTATCCAGT 58.798 41.667 0.00 0.00 39.53 4.00
2052 2960 5.776173 ACTTTCATCGGAGTACTATCCAG 57.224 43.478 0.00 0.00 39.53 3.86
2053 2961 5.237996 CGTACTTTCATCGGAGTACTATCCA 59.762 44.000 0.00 0.00 43.73 3.41
2054 2962 5.687828 CGTACTTTCATCGGAGTACTATCC 58.312 45.833 0.00 0.00 43.73 2.59
2055 2963 5.145759 GCGTACTTTCATCGGAGTACTATC 58.854 45.833 0.00 0.00 43.73 2.08
2056 2964 4.577693 TGCGTACTTTCATCGGAGTACTAT 59.422 41.667 0.00 0.00 43.73 2.12
2057 2965 3.940852 TGCGTACTTTCATCGGAGTACTA 59.059 43.478 0.00 0.00 43.73 1.82
2058 2966 2.751259 TGCGTACTTTCATCGGAGTACT 59.249 45.455 0.00 0.00 43.73 2.73
2059 2967 3.141002 TGCGTACTTTCATCGGAGTAC 57.859 47.619 4.10 4.10 42.92 2.73
2060 2968 3.853831 TTGCGTACTTTCATCGGAGTA 57.146 42.857 0.00 0.00 0.00 2.59
2061 2969 2.736144 TTGCGTACTTTCATCGGAGT 57.264 45.000 0.00 0.00 0.00 3.85
2062 2970 3.432252 ACTTTTGCGTACTTTCATCGGAG 59.568 43.478 0.00 0.00 0.00 4.63
2063 2971 3.395639 ACTTTTGCGTACTTTCATCGGA 58.604 40.909 0.00 0.00 0.00 4.55
2064 2972 3.806316 ACTTTTGCGTACTTTCATCGG 57.194 42.857 0.00 0.00 0.00 4.18
2065 2973 5.511088 AGTACTTTTGCGTACTTTCATCG 57.489 39.130 0.00 0.00 45.76 3.84
2066 2974 9.099820 GTTTTAGTACTTTTGCGTACTTTCATC 57.900 33.333 0.00 0.00 45.76 2.92
2067 2975 7.795272 CGTTTTAGTACTTTTGCGTACTTTCAT 59.205 33.333 0.00 0.00 45.76 2.57
2068 2976 7.009999 TCGTTTTAGTACTTTTGCGTACTTTCA 59.990 33.333 0.00 0.00 45.76 2.69
2069 2977 7.336975 TCGTTTTAGTACTTTTGCGTACTTTC 58.663 34.615 0.00 0.00 45.76 2.62
2070 2978 7.010460 ACTCGTTTTAGTACTTTTGCGTACTTT 59.990 33.333 0.00 0.00 45.76 2.66
2071 2979 6.476706 ACTCGTTTTAGTACTTTTGCGTACTT 59.523 34.615 0.00 0.00 45.76 2.24
2073 2981 6.060773 CACTCGTTTTAGTACTTTTGCGTAC 58.939 40.000 0.00 0.00 39.97 3.67
2074 2982 5.175491 CCACTCGTTTTAGTACTTTTGCGTA 59.825 40.000 0.00 0.00 0.00 4.42
2075 2983 4.025480 CCACTCGTTTTAGTACTTTTGCGT 60.025 41.667 0.00 0.00 0.00 5.24
2076 2984 4.451557 CCACTCGTTTTAGTACTTTTGCG 58.548 43.478 0.00 1.98 0.00 4.85
2077 2985 4.319984 CCCCACTCGTTTTAGTACTTTTGC 60.320 45.833 0.00 0.00 0.00 3.68
2078 2986 4.319984 GCCCCACTCGTTTTAGTACTTTTG 60.320 45.833 0.00 0.00 0.00 2.44
2079 2987 3.817084 GCCCCACTCGTTTTAGTACTTTT 59.183 43.478 0.00 0.00 0.00 2.27
2080 2988 3.405831 GCCCCACTCGTTTTAGTACTTT 58.594 45.455 0.00 0.00 0.00 2.66
2081 2989 2.289882 GGCCCCACTCGTTTTAGTACTT 60.290 50.000 0.00 0.00 0.00 2.24
2082 2990 1.277273 GGCCCCACTCGTTTTAGTACT 59.723 52.381 0.00 0.00 0.00 2.73
2083 2991 1.730501 GGCCCCACTCGTTTTAGTAC 58.269 55.000 0.00 0.00 0.00 2.73
2084 2992 0.247185 CGGCCCCACTCGTTTTAGTA 59.753 55.000 0.00 0.00 0.00 1.82
2085 2993 1.004200 CGGCCCCACTCGTTTTAGT 60.004 57.895 0.00 0.00 0.00 2.24
2086 2994 1.743995 CCGGCCCCACTCGTTTTAG 60.744 63.158 0.00 0.00 0.00 1.85
2087 2995 1.190833 TACCGGCCCCACTCGTTTTA 61.191 55.000 0.00 0.00 0.00 1.52
2088 2996 2.518709 TACCGGCCCCACTCGTTTT 61.519 57.895 0.00 0.00 0.00 2.43
2089 2997 2.924101 TACCGGCCCCACTCGTTT 60.924 61.111 0.00 0.00 0.00 3.60
2090 2998 3.698820 GTACCGGCCCCACTCGTT 61.699 66.667 0.00 0.00 0.00 3.85
2091 2999 4.691359 AGTACCGGCCCCACTCGT 62.691 66.667 0.00 0.00 0.00 4.18
2092 3000 3.834799 GAGTACCGGCCCCACTCG 61.835 72.222 0.00 0.00 30.27 4.18
2093 3001 3.834799 CGAGTACCGGCCCCACTC 61.835 72.222 0.00 13.55 36.23 3.51
2094 3002 4.691359 ACGAGTACCGGCCCCACT 62.691 66.667 0.00 0.00 43.93 4.00
2095 3003 4.446413 CACGAGTACCGGCCCCAC 62.446 72.222 0.00 0.00 43.93 4.61
2096 3004 4.682334 TCACGAGTACCGGCCCCA 62.682 66.667 0.00 0.00 43.93 4.96
2097 3005 4.139234 GTCACGAGTACCGGCCCC 62.139 72.222 0.00 0.00 43.93 5.80
2098 3006 2.830704 CTTGTCACGAGTACCGGCCC 62.831 65.000 0.00 0.00 43.93 5.80
2099 3007 1.445582 CTTGTCACGAGTACCGGCC 60.446 63.158 0.00 0.00 43.93 6.13
2100 3008 2.092882 GCTTGTCACGAGTACCGGC 61.093 63.158 0.00 0.00 43.93 6.13
2101 3009 0.732880 CAGCTTGTCACGAGTACCGG 60.733 60.000 0.00 0.00 43.93 5.28
2102 3010 0.732880 CCAGCTTGTCACGAGTACCG 60.733 60.000 0.00 2.71 45.44 4.02
2103 3011 0.389948 CCCAGCTTGTCACGAGTACC 60.390 60.000 0.00 0.00 0.00 3.34
2104 3012 0.389948 CCCCAGCTTGTCACGAGTAC 60.390 60.000 0.00 0.00 0.00 2.73
2105 3013 0.541063 TCCCCAGCTTGTCACGAGTA 60.541 55.000 0.00 0.00 0.00 2.59
2106 3014 1.837051 TCCCCAGCTTGTCACGAGT 60.837 57.895 0.00 0.00 0.00 4.18
2107 3015 1.374758 GTCCCCAGCTTGTCACGAG 60.375 63.158 0.00 0.00 0.00 4.18
2108 3016 2.741092 GTCCCCAGCTTGTCACGA 59.259 61.111 0.00 0.00 0.00 4.35
2109 3017 2.738521 CGTCCCCAGCTTGTCACG 60.739 66.667 0.00 0.00 0.00 4.35
2110 3018 3.050275 GCGTCCCCAGCTTGTCAC 61.050 66.667 0.00 0.00 0.00 3.67
2111 3019 4.680237 CGCGTCCCCAGCTTGTCA 62.680 66.667 0.00 0.00 0.00 3.58
2112 3020 4.681978 ACGCGTCCCCAGCTTGTC 62.682 66.667 5.58 0.00 0.00 3.18
2113 3021 3.767630 AAACGCGTCCCCAGCTTGT 62.768 57.895 14.44 0.00 0.00 3.16
2114 3022 1.231958 TAAAACGCGTCCCCAGCTTG 61.232 55.000 14.44 0.00 0.00 4.01
2115 3023 0.535553 TTAAAACGCGTCCCCAGCTT 60.536 50.000 14.44 0.00 0.00 3.74
2116 3024 0.322187 ATTAAAACGCGTCCCCAGCT 60.322 50.000 14.44 0.00 0.00 4.24
2117 3025 1.371595 TATTAAAACGCGTCCCCAGC 58.628 50.000 14.44 0.00 0.00 4.85
2118 3026 3.744426 CCTATATTAAAACGCGTCCCCAG 59.256 47.826 14.44 1.97 0.00 4.45
2119 3027 3.494749 CCCTATATTAAAACGCGTCCCCA 60.495 47.826 14.44 0.00 0.00 4.96
2120 3028 3.069289 CCCTATATTAAAACGCGTCCCC 58.931 50.000 14.44 0.00 0.00 4.81
2121 3029 3.069289 CCCCTATATTAAAACGCGTCCC 58.931 50.000 14.44 0.00 0.00 4.46
2122 3030 2.481568 GCCCCTATATTAAAACGCGTCC 59.518 50.000 14.44 0.00 0.00 4.79
2123 3031 3.132925 TGCCCCTATATTAAAACGCGTC 58.867 45.455 14.44 0.00 0.00 5.19
2124 3032 3.135994 CTGCCCCTATATTAAAACGCGT 58.864 45.455 5.58 5.58 0.00 6.01
2125 3033 3.135994 ACTGCCCCTATATTAAAACGCG 58.864 45.455 3.53 3.53 0.00 6.01
2126 3034 5.509716 AAACTGCCCCTATATTAAAACGC 57.490 39.130 0.00 0.00 0.00 4.84
2127 3035 7.041576 GGACTAAACTGCCCCTATATTAAAACG 60.042 40.741 0.00 0.00 0.00 3.60
2128 3036 7.997223 AGGACTAAACTGCCCCTATATTAAAAC 59.003 37.037 0.00 0.00 0.00 2.43
2129 3037 8.109560 AGGACTAAACTGCCCCTATATTAAAA 57.890 34.615 0.00 0.00 0.00 1.52
2130 3038 7.701257 AGGACTAAACTGCCCCTATATTAAA 57.299 36.000 0.00 0.00 0.00 1.52
2131 3039 7.456902 CCTAGGACTAAACTGCCCCTATATTAA 59.543 40.741 1.05 0.00 0.00 1.40
2132 3040 6.958192 CCTAGGACTAAACTGCCCCTATATTA 59.042 42.308 1.05 0.00 0.00 0.98
2133 3041 5.785940 CCTAGGACTAAACTGCCCCTATATT 59.214 44.000 1.05 0.00 0.00 1.28
2134 3042 5.342866 CCTAGGACTAAACTGCCCCTATAT 58.657 45.833 1.05 0.00 0.00 0.86
2135 3043 4.450265 CCCTAGGACTAAACTGCCCCTATA 60.450 50.000 11.48 0.00 0.00 1.31
2136 3044 3.588569 CCTAGGACTAAACTGCCCCTAT 58.411 50.000 1.05 0.00 0.00 2.57
2137 3045 2.359994 CCCTAGGACTAAACTGCCCCTA 60.360 54.545 11.48 0.00 0.00 3.53
2138 3046 1.625508 CCCTAGGACTAAACTGCCCCT 60.626 57.143 11.48 0.00 0.00 4.79
2139 3047 0.837940 CCCTAGGACTAAACTGCCCC 59.162 60.000 11.48 0.00 0.00 5.80
2140 3048 1.875488 TCCCTAGGACTAAACTGCCC 58.125 55.000 11.48 0.00 0.00 5.36
2141 3049 3.607741 GTTTCCCTAGGACTAAACTGCC 58.392 50.000 11.48 0.00 0.00 4.85
2142 3050 3.607741 GGTTTCCCTAGGACTAAACTGC 58.392 50.000 22.70 11.43 33.40 4.40
2143 3051 3.512724 TCGGTTTCCCTAGGACTAAACTG 59.487 47.826 23.72 23.72 38.81 3.16
2144 3052 3.782992 TCGGTTTCCCTAGGACTAAACT 58.217 45.455 22.70 0.00 33.40 2.66
2145 3053 4.541973 TTCGGTTTCCCTAGGACTAAAC 57.458 45.455 11.48 16.32 0.00 2.01
2146 3054 5.308014 GTTTTCGGTTTCCCTAGGACTAAA 58.692 41.667 11.48 5.09 0.00 1.85
2147 3055 4.263025 GGTTTTCGGTTTCCCTAGGACTAA 60.263 45.833 11.48 0.00 0.00 2.24
2148 3056 3.261643 GGTTTTCGGTTTCCCTAGGACTA 59.738 47.826 11.48 0.00 0.00 2.59
2149 3057 2.039480 GGTTTTCGGTTTCCCTAGGACT 59.961 50.000 11.48 0.00 0.00 3.85
2150 3058 2.430465 GGTTTTCGGTTTCCCTAGGAC 58.570 52.381 11.48 0.00 0.00 3.85
2151 3059 1.352017 GGGTTTTCGGTTTCCCTAGGA 59.648 52.381 11.48 0.00 37.18 2.94
2152 3060 1.830279 GGGTTTTCGGTTTCCCTAGG 58.170 55.000 0.06 0.06 37.18 3.02
2156 3064 2.094390 GCATTAGGGTTTTCGGTTTCCC 60.094 50.000 0.00 0.00 40.16 3.97
2157 3065 2.414957 CGCATTAGGGTTTTCGGTTTCC 60.415 50.000 0.00 0.00 0.00 3.13
2158 3066 2.414957 CCGCATTAGGGTTTTCGGTTTC 60.415 50.000 0.00 0.00 32.93 2.78
2159 3067 1.542472 CCGCATTAGGGTTTTCGGTTT 59.458 47.619 0.00 0.00 32.93 3.27
2160 3068 1.170442 CCGCATTAGGGTTTTCGGTT 58.830 50.000 0.00 0.00 32.93 4.44
2161 3069 1.310216 GCCGCATTAGGGTTTTCGGT 61.310 55.000 0.00 0.00 39.11 4.69
2162 3070 1.431845 GCCGCATTAGGGTTTTCGG 59.568 57.895 0.00 0.00 39.81 4.30
2163 3071 1.431845 GGCCGCATTAGGGTTTTCG 59.568 57.895 0.00 0.00 0.00 3.46
2164 3072 1.431845 CGGCCGCATTAGGGTTTTC 59.568 57.895 14.67 0.00 0.00 2.29
2165 3073 2.706834 GCGGCCGCATTAGGGTTTT 61.707 57.895 43.55 0.00 41.49 2.43
2166 3074 3.138128 GCGGCCGCATTAGGGTTT 61.138 61.111 43.55 0.00 41.49 3.27
2306 3218 0.980754 ATGCAGGGGTGACGGATACA 60.981 55.000 0.00 0.00 0.00 2.29
2345 3260 5.819901 GCAATAAAGTGCCAATAGACTCTCT 59.180 40.000 0.00 0.00 38.66 3.10
2468 3384 4.142138 TGCAAAGCCCTTCTTTCGTAAAAA 60.142 37.500 0.00 0.00 42.82 1.94
2469 3385 3.381908 TGCAAAGCCCTTCTTTCGTAAAA 59.618 39.130 0.00 0.00 42.82 1.52
2470 3386 2.952978 TGCAAAGCCCTTCTTTCGTAAA 59.047 40.909 0.00 0.00 42.82 2.01
2471 3387 2.292292 GTGCAAAGCCCTTCTTTCGTAA 59.708 45.455 0.00 0.00 42.82 3.18
2472 3388 1.877443 GTGCAAAGCCCTTCTTTCGTA 59.123 47.619 0.00 0.00 42.82 3.43
2473 3389 0.668535 GTGCAAAGCCCTTCTTTCGT 59.331 50.000 0.00 0.00 42.82 3.85
2474 3390 0.039165 GGTGCAAAGCCCTTCTTTCG 60.039 55.000 0.00 0.00 42.82 3.46
2475 3391 0.318441 GGGTGCAAAGCCCTTCTTTC 59.682 55.000 3.59 0.00 42.82 2.62
2476 3392 2.440946 GGGTGCAAAGCCCTTCTTT 58.559 52.632 3.59 0.00 45.43 2.52
2477 3393 4.198087 GGGTGCAAAGCCCTTCTT 57.802 55.556 3.59 0.00 42.81 2.52
2482 3398 1.194121 ATTGGAAGGGTGCAAAGCCC 61.194 55.000 2.55 2.55 46.43 5.19
2483 3399 0.686789 AATTGGAAGGGTGCAAAGCC 59.313 50.000 0.00 0.00 38.70 4.35
2484 3400 2.549064 AAATTGGAAGGGTGCAAAGC 57.451 45.000 0.00 0.00 38.70 3.51
2485 3401 4.070630 TGAAAATTGGAAGGGTGCAAAG 57.929 40.909 0.00 0.00 38.70 2.77
2486 3402 4.703379 ATGAAAATTGGAAGGGTGCAAA 57.297 36.364 0.00 0.00 38.70 3.68
2487 3403 4.703379 AATGAAAATTGGAAGGGTGCAA 57.297 36.364 0.00 0.00 39.64 4.08
2488 3404 5.815233 TTAATGAAAATTGGAAGGGTGCA 57.185 34.783 0.00 0.00 0.00 4.57
2489 3405 6.405538 TCATTAATGAAAATTGGAAGGGTGC 58.594 36.000 15.82 0.00 33.08 5.01
2504 3420 9.402320 TCCGAATTCTATGGTTTTCATTAATGA 57.598 29.630 14.23 14.23 37.30 2.57
2505 3421 9.669353 CTCCGAATTCTATGGTTTTCATTAATG 57.331 33.333 9.29 9.29 37.30 1.90
2506 3422 8.352942 GCTCCGAATTCTATGGTTTTCATTAAT 58.647 33.333 3.52 0.00 37.30 1.40
2507 3423 7.556275 AGCTCCGAATTCTATGGTTTTCATTAA 59.444 33.333 3.52 0.00 37.30 1.40
2508 3424 7.054124 AGCTCCGAATTCTATGGTTTTCATTA 58.946 34.615 3.52 0.00 37.30 1.90
2509 3425 5.888161 AGCTCCGAATTCTATGGTTTTCATT 59.112 36.000 3.52 0.00 37.30 2.57
2510 3426 5.440610 AGCTCCGAATTCTATGGTTTTCAT 58.559 37.500 3.52 0.00 39.78 2.57
2511 3427 4.843728 AGCTCCGAATTCTATGGTTTTCA 58.156 39.130 3.52 0.00 0.00 2.69
2512 3428 5.815740 TGTAGCTCCGAATTCTATGGTTTTC 59.184 40.000 3.52 0.00 0.00 2.29
2513 3429 5.741011 TGTAGCTCCGAATTCTATGGTTTT 58.259 37.500 3.52 0.00 0.00 2.43
2514 3430 5.353394 TGTAGCTCCGAATTCTATGGTTT 57.647 39.130 3.52 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.