Multiple sequence alignment - TraesCS2D01G084800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G084800 chr2D 100.000 2606 0 0 1 2606 36750139 36752744 0.000000e+00 4813
1 TraesCS2D01G084800 chr2D 77.674 533 67 27 1015 1530 36771124 36771621 7.100000e-71 278
2 TraesCS2D01G084800 chr2D 79.479 307 39 17 1317 1608 36783840 36784137 2.050000e-46 196
3 TraesCS2D01G084800 chr2A 96.352 1672 37 7 1 1655 41102408 41104072 0.000000e+00 2728
4 TraesCS2D01G084800 chr2A 93.464 765 41 3 1848 2606 41104226 41104987 0.000000e+00 1127
5 TraesCS2D01G084800 chr2A 75.197 633 83 41 1015 1608 41170253 41170850 5.610000e-57 231
6 TraesCS2D01G084800 chr2A 79.618 314 40 17 1310 1608 41208491 41208795 1.220000e-48 204
7 TraesCS2D01G084800 chr2A 79.618 314 40 17 1310 1608 41218346 41218650 1.220000e-48 204
8 TraesCS2D01G084800 chr2B 90.669 1779 120 25 3 1760 63093363 63095116 0.000000e+00 2324
9 TraesCS2D01G084800 chr2B 94.723 758 38 2 1848 2605 63100581 63101336 0.000000e+00 1177
10 TraesCS2D01G084800 chr2B 77.381 588 88 24 1048 1608 63260768 63261337 9.060000e-80 307
11 TraesCS2D01G084800 chr2B 74.897 725 102 42 1016 1705 63140650 63141329 9.250000e-65 257
12 TraesCS2D01G084800 chr2B 74.878 617 95 35 1042 1607 63255255 63255862 2.610000e-55 226
13 TraesCS2D01G084800 chr2B 78.549 317 39 19 1310 1608 63250351 63250656 5.730000e-42 182
14 TraesCS2D01G084800 chr4B 87.179 234 27 1 2305 2535 52856034 52855801 1.990000e-66 263
15 TraesCS2D01G084800 chr6B 86.325 234 29 1 2305 2535 104431417 104431650 4.310000e-63 252
16 TraesCS2D01G084800 chrUn 82.684 231 34 2 2305 2535 290842537 290842313 1.580000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G084800 chr2D 36750139 36752744 2605 False 4813.0 4813 100.000 1 2606 1 chr2D.!!$F1 2605
1 TraesCS2D01G084800 chr2A 41102408 41104987 2579 False 1927.5 2728 94.908 1 2606 2 chr2A.!!$F4 2605
2 TraesCS2D01G084800 chr2A 41170253 41170850 597 False 231.0 231 75.197 1015 1608 1 chr2A.!!$F1 593
3 TraesCS2D01G084800 chr2B 63093363 63095116 1753 False 2324.0 2324 90.669 3 1760 1 chr2B.!!$F1 1757
4 TraesCS2D01G084800 chr2B 63100581 63101336 755 False 1177.0 1177 94.723 1848 2605 1 chr2B.!!$F2 757
5 TraesCS2D01G084800 chr2B 63260768 63261337 569 False 307.0 307 77.381 1048 1608 1 chr2B.!!$F6 560
6 TraesCS2D01G084800 chr2B 63140650 63141329 679 False 257.0 257 74.897 1016 1705 1 chr2B.!!$F3 689
7 TraesCS2D01G084800 chr2B 63255255 63255862 607 False 226.0 226 74.878 1042 1607 1 chr2B.!!$F5 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 120 1.148273 GGTGAAGCTGTGACCCACA 59.852 57.895 0.0 0.0 42.45 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2098 0.036732 ATCACCGCAGCAAGGAGAAA 59.963 50.0 0.0 0.0 32.4 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 77 2.115427 TGGCTATTGCTACTACTGGCA 58.885 47.619 0.00 0.00 39.59 4.92
113 120 1.148273 GGTGAAGCTGTGACCCACA 59.852 57.895 0.00 0.00 42.45 4.17
145 152 1.435577 ATTTGCTGTAACCGTCGTCC 58.564 50.000 0.00 0.00 0.00 4.79
285 292 7.918562 GCCGAGGAAATTTGCTACAATTATTTA 59.081 33.333 12.63 0.00 0.00 1.40
990 1015 2.520754 GTCGCGTGCGTTTTTATCAATC 59.479 45.455 14.47 0.00 40.74 2.67
1037 1068 2.362369 CCTCGGATGACCTGCCACT 61.362 63.158 0.00 0.00 0.00 4.00
1125 1160 2.125673 GGCTACTCGCGGCTCAAA 60.126 61.111 6.13 0.00 40.44 2.69
1218 1262 1.070105 CAACGGGTCGGTCAAGGAA 59.930 57.895 0.00 0.00 0.00 3.36
1299 1373 3.567797 GAAGCTGCCGATGCCGTC 61.568 66.667 0.00 0.00 36.33 4.79
1530 1607 1.068417 CAAGGTCACCGTCGTCCAA 59.932 57.895 0.00 0.00 0.00 3.53
1617 1721 6.039829 GCATCCGTGGATAGATCATAGATGTA 59.960 42.308 0.05 0.00 33.19 2.29
1693 1800 5.924475 ACTAATTCCTGTTGTTTCACTCG 57.076 39.130 0.00 0.00 0.00 4.18
1755 1863 1.593196 TGAGAAAACAACTGCTCGGG 58.407 50.000 0.00 0.00 0.00 5.14
1760 1868 1.734388 AAACAACTGCTCGGGCCAAC 61.734 55.000 3.94 0.00 37.74 3.77
1761 1869 2.594303 CAACTGCTCGGGCCAACA 60.594 61.111 3.94 0.00 37.74 3.33
1764 1872 2.281761 CTGCTCGGGCCAACAGTT 60.282 61.111 3.94 0.00 37.74 3.16
1765 1873 1.898574 CTGCTCGGGCCAACAGTTT 60.899 57.895 3.94 0.00 37.74 2.66
1766 1874 0.605319 CTGCTCGGGCCAACAGTTTA 60.605 55.000 3.94 0.00 37.74 2.01
1767 1875 0.605319 TGCTCGGGCCAACAGTTTAG 60.605 55.000 3.94 0.00 37.74 1.85
1768 1876 0.321298 GCTCGGGCCAACAGTTTAGA 60.321 55.000 4.39 0.00 0.00 2.10
1769 1877 1.880646 GCTCGGGCCAACAGTTTAGAA 60.881 52.381 4.39 0.00 0.00 2.10
1770 1878 1.804748 CTCGGGCCAACAGTTTAGAAC 59.195 52.381 4.39 0.00 0.00 3.01
1771 1879 1.141254 TCGGGCCAACAGTTTAGAACA 59.859 47.619 4.39 0.00 0.00 3.18
1772 1880 1.950909 CGGGCCAACAGTTTAGAACAA 59.049 47.619 4.39 0.00 0.00 2.83
1773 1881 2.031157 CGGGCCAACAGTTTAGAACAAG 60.031 50.000 4.39 0.00 0.00 3.16
1774 1882 3.219281 GGGCCAACAGTTTAGAACAAGA 58.781 45.455 4.39 0.00 0.00 3.02
1775 1883 3.253432 GGGCCAACAGTTTAGAACAAGAG 59.747 47.826 4.39 0.00 0.00 2.85
1776 1884 3.253432 GGCCAACAGTTTAGAACAAGAGG 59.747 47.826 0.00 0.00 0.00 3.69
1777 1885 3.883489 GCCAACAGTTTAGAACAAGAGGT 59.117 43.478 0.00 0.00 0.00 3.85
1778 1886 4.023963 GCCAACAGTTTAGAACAAGAGGTC 60.024 45.833 0.00 0.00 0.00 3.85
1779 1887 4.211374 CCAACAGTTTAGAACAAGAGGTCG 59.789 45.833 0.00 0.00 0.00 4.79
1780 1888 4.667519 ACAGTTTAGAACAAGAGGTCGT 57.332 40.909 0.00 0.00 0.00 4.34
1781 1889 5.779529 ACAGTTTAGAACAAGAGGTCGTA 57.220 39.130 0.00 0.00 0.00 3.43
1782 1890 5.770417 ACAGTTTAGAACAAGAGGTCGTAG 58.230 41.667 0.00 0.00 0.00 3.51
1783 1891 4.621886 CAGTTTAGAACAAGAGGTCGTAGC 59.378 45.833 0.00 0.00 0.00 3.58
1784 1892 3.482722 TTAGAACAAGAGGTCGTAGCG 57.517 47.619 0.00 0.00 0.00 4.26
1785 1893 1.245732 AGAACAAGAGGTCGTAGCGT 58.754 50.000 0.00 0.00 0.00 5.07
1786 1894 2.430465 AGAACAAGAGGTCGTAGCGTA 58.570 47.619 0.00 0.00 0.00 4.42
1787 1895 2.161211 AGAACAAGAGGTCGTAGCGTAC 59.839 50.000 0.00 0.00 0.00 3.67
1788 1896 0.807496 ACAAGAGGTCGTAGCGTACC 59.193 55.000 0.00 0.00 35.91 3.34
1789 1897 0.100146 CAAGAGGTCGTAGCGTACCC 59.900 60.000 0.00 0.00 36.34 3.69
1790 1898 1.034292 AAGAGGTCGTAGCGTACCCC 61.034 60.000 0.00 0.00 36.34 4.95
1791 1899 1.750399 GAGGTCGTAGCGTACCCCA 60.750 63.158 0.00 0.00 36.34 4.96
1792 1900 1.304381 AGGTCGTAGCGTACCCCAA 60.304 57.895 0.00 0.00 36.34 4.12
1793 1901 1.153765 GGTCGTAGCGTACCCCAAC 60.154 63.158 0.00 0.00 0.00 3.77
1794 1902 1.153765 GTCGTAGCGTACCCCAACC 60.154 63.158 0.00 0.00 0.00 3.77
1795 1903 2.185093 CGTAGCGTACCCCAACCC 59.815 66.667 0.00 0.00 0.00 4.11
1796 1904 2.353610 CGTAGCGTACCCCAACCCT 61.354 63.158 0.00 0.00 0.00 4.34
1797 1905 1.037030 CGTAGCGTACCCCAACCCTA 61.037 60.000 0.00 0.00 0.00 3.53
1798 1906 0.749049 GTAGCGTACCCCAACCCTAG 59.251 60.000 0.00 0.00 0.00 3.02
1799 1907 1.044790 TAGCGTACCCCAACCCTAGC 61.045 60.000 0.00 0.00 0.00 3.42
1800 1908 2.905681 CGTACCCCAACCCTAGCC 59.094 66.667 0.00 0.00 0.00 3.93
1801 1909 1.991167 CGTACCCCAACCCTAGCCA 60.991 63.158 0.00 0.00 0.00 4.75
1802 1910 1.605992 GTACCCCAACCCTAGCCAC 59.394 63.158 0.00 0.00 0.00 5.01
1803 1911 1.617233 TACCCCAACCCTAGCCACC 60.617 63.158 0.00 0.00 0.00 4.61
1804 1912 4.109675 CCCCAACCCTAGCCACCG 62.110 72.222 0.00 0.00 0.00 4.94
1805 1913 3.327404 CCCAACCCTAGCCACCGT 61.327 66.667 0.00 0.00 0.00 4.83
1806 1914 2.267961 CCAACCCTAGCCACCGTC 59.732 66.667 0.00 0.00 0.00 4.79
1807 1915 2.589157 CCAACCCTAGCCACCGTCA 61.589 63.158 0.00 0.00 0.00 4.35
1808 1916 1.602237 CAACCCTAGCCACCGTCAT 59.398 57.895 0.00 0.00 0.00 3.06
1809 1917 0.744414 CAACCCTAGCCACCGTCATG 60.744 60.000 0.00 0.00 0.00 3.07
1810 1918 1.910580 AACCCTAGCCACCGTCATGG 61.911 60.000 0.00 0.00 46.41 3.66
1819 1927 3.221222 CCGTCATGGTCCTCCTCC 58.779 66.667 0.00 0.00 34.23 4.30
1838 1948 0.547075 CGTCTACCTCCTCTCTCCCA 59.453 60.000 0.00 0.00 0.00 4.37
1891 2049 8.026607 TCTTTAGAATTTTGTTTCCTATTGGCG 58.973 33.333 0.00 0.00 0.00 5.69
1894 2052 3.926821 TTTTGTTTCCTATTGGCGTCC 57.073 42.857 0.00 0.00 0.00 4.79
1896 2054 2.799126 TGTTTCCTATTGGCGTCCAT 57.201 45.000 0.00 0.00 31.53 3.41
1915 2073 0.830023 TGAGGTGGTGATGGTGACGA 60.830 55.000 0.00 0.00 0.00 4.20
1917 2075 1.736645 GGTGGTGATGGTGACGACG 60.737 63.158 0.00 0.00 0.00 5.12
1920 2078 2.380410 GGTGATGGTGACGACGCAC 61.380 63.158 12.16 12.16 38.05 5.34
1929 2087 2.092211 GGTGACGACGCACTGAAATAAG 59.908 50.000 17.60 0.00 38.78 1.73
1940 2098 3.195825 CACTGAAATAAGGTCTCTCCGGT 59.804 47.826 0.00 0.00 41.99 5.28
1943 2101 4.828829 TGAAATAAGGTCTCTCCGGTTTC 58.171 43.478 0.00 0.33 41.99 2.78
1951 2109 0.610687 CTCTCCGGTTTCTCCTTGCT 59.389 55.000 0.00 0.00 0.00 3.91
1956 2114 1.600916 GGTTTCTCCTTGCTGCGGT 60.601 57.895 0.00 0.00 0.00 5.68
1959 2117 0.036732 TTTCTCCTTGCTGCGGTGAT 59.963 50.000 0.00 0.00 0.00 3.06
1963 2121 2.401766 CCTTGCTGCGGTGATGTCC 61.402 63.158 0.00 0.00 0.00 4.02
1975 2133 2.481449 GGTGATGTCCGATCTAAGCGTT 60.481 50.000 0.00 0.00 0.00 4.84
2074 2236 7.981225 ACAACATCTTCTTTACATTTGTTTGCT 59.019 29.630 0.00 0.00 0.00 3.91
2083 2245 4.804868 ACATTTGTTTGCTGGCATGATA 57.195 36.364 0.00 0.00 0.00 2.15
2466 2633 7.974675 TGTGTATAAGTGTAGTTACGAGGTAC 58.025 38.462 0.00 0.00 0.00 3.34
2537 2704 0.996583 TATTTGGTCGGGAAAGGCCT 59.003 50.000 0.00 0.00 36.69 5.19
2557 2724 1.354101 ATGACAACCCCAACGGACTA 58.646 50.000 0.00 0.00 34.64 2.59
2601 2768 3.410541 CCAACGGGATGGGAAGGA 58.589 61.111 0.00 0.00 36.79 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 77 1.904287 TGGTTCTAGCAATTGCCGTT 58.096 45.000 26.45 11.28 43.38 4.44
113 120 1.802960 CAGCAAATTGTCGTCTCTGCT 59.197 47.619 0.00 0.00 40.64 4.24
285 292 2.762327 ACTACGACCGGTTATCACCATT 59.238 45.455 9.42 0.00 44.53 3.16
358 365 2.697761 CCATCCTCGTCGTCACCGT 61.698 63.158 0.00 0.00 35.01 4.83
362 369 1.313091 CCACTCCATCCTCGTCGTCA 61.313 60.000 0.00 0.00 0.00 4.35
831 845 2.905959 ACGGCCGTAAAGTATTTTGC 57.094 45.000 33.34 0.00 40.09 3.68
1125 1160 1.743995 GTAGCCGCCGTTCATGGTT 60.744 57.895 0.00 0.00 0.00 3.67
1299 1373 1.260206 CGATGTTCTCCTTGTCGACG 58.740 55.000 11.62 0.00 34.46 5.12
1301 1375 1.201647 GGACGATGTTCTCCTTGTCGA 59.798 52.381 0.00 0.00 36.28 4.20
1458 1535 1.446272 GGAACGCTTCAGGTCCTCG 60.446 63.158 0.00 0.00 44.45 4.63
1530 1607 1.106944 CCCCTTTGACGGCACACTTT 61.107 55.000 0.00 0.00 0.00 2.66
1647 1752 5.461032 AACGCATAACAAATTTTCTCCCA 57.539 34.783 0.00 0.00 0.00 4.37
1755 1863 3.883489 ACCTCTTGTTCTAAACTGTTGGC 59.117 43.478 0.00 0.00 0.00 4.52
1760 1868 4.621886 GCTACGACCTCTTGTTCTAAACTG 59.378 45.833 0.00 0.00 0.00 3.16
1761 1869 4.615452 CGCTACGACCTCTTGTTCTAAACT 60.615 45.833 0.00 0.00 0.00 2.66
1764 1872 2.816087 ACGCTACGACCTCTTGTTCTAA 59.184 45.455 0.00 0.00 0.00 2.10
1765 1873 2.430465 ACGCTACGACCTCTTGTTCTA 58.570 47.619 0.00 0.00 0.00 2.10
1766 1874 1.245732 ACGCTACGACCTCTTGTTCT 58.754 50.000 0.00 0.00 0.00 3.01
1767 1875 2.513893 GTACGCTACGACCTCTTGTTC 58.486 52.381 0.00 0.00 0.00 3.18
1768 1876 1.200948 GGTACGCTACGACCTCTTGTT 59.799 52.381 0.00 0.00 32.58 2.83
1769 1877 0.807496 GGTACGCTACGACCTCTTGT 59.193 55.000 0.00 0.00 32.58 3.16
1770 1878 0.100146 GGGTACGCTACGACCTCTTG 59.900 60.000 2.05 0.00 35.91 3.02
1771 1879 1.034292 GGGGTACGCTACGACCTCTT 61.034 60.000 10.04 0.00 38.67 2.85
1772 1880 1.452833 GGGGTACGCTACGACCTCT 60.453 63.158 10.04 0.00 38.67 3.69
1773 1881 1.315257 TTGGGGTACGCTACGACCTC 61.315 60.000 10.04 0.00 43.80 3.85
1774 1882 1.304381 TTGGGGTACGCTACGACCT 60.304 57.895 10.04 0.00 43.80 3.85
1775 1883 1.153765 GTTGGGGTACGCTACGACC 60.154 63.158 10.04 0.00 43.80 4.79
1776 1884 1.153765 GGTTGGGGTACGCTACGAC 60.154 63.158 10.04 4.20 46.37 4.34
1777 1885 2.350458 GGGTTGGGGTACGCTACGA 61.350 63.158 10.04 0.00 46.37 3.43
1778 1886 1.037030 TAGGGTTGGGGTACGCTACG 61.037 60.000 10.04 0.00 46.37 3.51
1779 1887 0.749049 CTAGGGTTGGGGTACGCTAC 59.251 60.000 10.04 8.27 44.95 3.58
1780 1888 1.044790 GCTAGGGTTGGGGTACGCTA 61.045 60.000 10.04 0.00 43.80 4.26
1781 1889 2.364780 GCTAGGGTTGGGGTACGCT 61.365 63.158 10.04 0.00 43.80 5.07
1782 1890 2.188731 GCTAGGGTTGGGGTACGC 59.811 66.667 0.29 0.29 43.69 4.42
1783 1891 1.991167 TGGCTAGGGTTGGGGTACG 60.991 63.158 0.00 0.00 0.00 3.67
1784 1892 1.605992 GTGGCTAGGGTTGGGGTAC 59.394 63.158 0.00 0.00 0.00 3.34
1785 1893 1.617233 GGTGGCTAGGGTTGGGGTA 60.617 63.158 0.00 0.00 0.00 3.69
1786 1894 2.939353 GGTGGCTAGGGTTGGGGT 60.939 66.667 0.00 0.00 0.00 4.95
1787 1895 4.109675 CGGTGGCTAGGGTTGGGG 62.110 72.222 0.00 0.00 0.00 4.96
1788 1896 3.325201 GACGGTGGCTAGGGTTGGG 62.325 68.421 0.00 0.00 0.00 4.12
1789 1897 1.910580 ATGACGGTGGCTAGGGTTGG 61.911 60.000 0.00 0.00 0.00 3.77
1790 1898 0.744414 CATGACGGTGGCTAGGGTTG 60.744 60.000 0.00 0.00 0.00 3.77
1791 1899 1.602237 CATGACGGTGGCTAGGGTT 59.398 57.895 0.00 0.00 0.00 4.11
1792 1900 2.367202 CCATGACGGTGGCTAGGGT 61.367 63.158 0.00 0.00 31.43 4.34
1793 1901 2.505982 CCATGACGGTGGCTAGGG 59.494 66.667 0.00 0.00 31.43 3.53
1802 1910 2.786495 CGGAGGAGGACCATGACGG 61.786 68.421 0.00 0.00 42.50 4.79
1803 1911 2.005960 GACGGAGGAGGACCATGACG 62.006 65.000 0.00 0.00 38.94 4.35
1804 1912 0.684805 AGACGGAGGAGGACCATGAC 60.685 60.000 0.00 0.00 38.94 3.06
1805 1913 0.924090 TAGACGGAGGAGGACCATGA 59.076 55.000 0.00 0.00 38.94 3.07
1806 1914 1.033574 GTAGACGGAGGAGGACCATG 58.966 60.000 0.00 0.00 38.94 3.66
1807 1915 0.106116 GGTAGACGGAGGAGGACCAT 60.106 60.000 0.00 0.00 38.94 3.55
1808 1916 1.212934 AGGTAGACGGAGGAGGACCA 61.213 60.000 0.00 0.00 38.94 4.02
1809 1917 0.466007 GAGGTAGACGGAGGAGGACC 60.466 65.000 0.00 0.00 0.00 4.46
1810 1918 0.466007 GGAGGTAGACGGAGGAGGAC 60.466 65.000 0.00 0.00 0.00 3.85
1819 1927 0.547075 TGGGAGAGAGGAGGTAGACG 59.453 60.000 0.00 0.00 0.00 4.18
1838 1948 1.152525 ACCTGATAGACCGCCCGAT 60.153 57.895 0.00 0.00 0.00 4.18
1873 2031 3.829601 TGGACGCCAATAGGAAACAAAAT 59.170 39.130 0.00 0.00 36.89 1.82
1894 2052 1.742761 GTCACCATCACCACCTCATG 58.257 55.000 0.00 0.00 0.00 3.07
1896 2054 0.830023 TCGTCACCATCACCACCTCA 60.830 55.000 0.00 0.00 0.00 3.86
1910 2068 2.288579 ACCTTATTTCAGTGCGTCGTCA 60.289 45.455 0.00 0.00 0.00 4.35
1915 2073 3.368531 GGAGAGACCTTATTTCAGTGCGT 60.369 47.826 0.00 0.00 35.41 5.24
1917 2075 3.190874 CGGAGAGACCTTATTTCAGTGC 58.809 50.000 0.00 0.00 36.31 4.40
1920 2078 4.473477 AACCGGAGAGACCTTATTTCAG 57.527 45.455 9.46 0.00 36.31 3.02
1929 2087 1.066787 CAAGGAGAAACCGGAGAGACC 60.067 57.143 9.46 6.02 44.74 3.85
1940 2098 0.036732 ATCACCGCAGCAAGGAGAAA 59.963 50.000 0.00 0.00 32.40 2.52
1943 2101 1.364626 GACATCACCGCAGCAAGGAG 61.365 60.000 0.00 0.00 0.00 3.69
1956 2114 4.357142 GTTAACGCTTAGATCGGACATCA 58.643 43.478 0.00 0.00 0.00 3.07
1959 2117 2.419673 TCGTTAACGCTTAGATCGGACA 59.580 45.455 22.96 0.00 39.60 4.02
1975 2133 2.435234 GCCACATGCCCGTCGTTA 60.435 61.111 0.00 0.00 0.00 3.18
2004 2162 4.053295 CCAACTGCTTTCCTTGATTGTTG 58.947 43.478 0.00 0.00 34.96 3.33
2005 2163 3.493176 GCCAACTGCTTTCCTTGATTGTT 60.493 43.478 0.00 0.00 36.87 2.83
2006 2164 2.036346 GCCAACTGCTTTCCTTGATTGT 59.964 45.455 0.00 0.00 36.87 2.71
2074 2236 3.342377 TGAAGAAACCGTATCATGCCA 57.658 42.857 0.00 0.00 0.00 4.92
2083 2245 5.753921 CAGTCTAGAAAGTTGAAGAAACCGT 59.246 40.000 0.00 0.00 39.85 4.83
2441 2608 7.065803 GGTACCTCGTAACTACACTTATACACA 59.934 40.741 4.06 0.00 0.00 3.72
2466 2633 1.684248 CCATCCTCTCCTTGCTTTGGG 60.684 57.143 0.00 0.00 0.00 4.12
2537 2704 1.354101 AGTCCGTTGGGGTTGTCATA 58.646 50.000 0.00 0.00 37.00 2.15
2557 2724 2.238144 CCATGGGCCTATCTCGATCAAT 59.762 50.000 2.85 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.