Multiple sequence alignment - TraesCS2D01G083600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G083600 chr2D 100.000 3283 0 0 1 3283 36111676 36114958 0.000000e+00 6063.0
1 TraesCS2D01G083600 chr2D 93.453 947 60 2 1381 2326 36123881 36122936 0.000000e+00 1404.0
2 TraesCS2D01G083600 chr2B 93.712 2290 107 9 715 2982 61340392 61338118 0.000000e+00 3397.0
3 TraesCS2D01G083600 chr2B 91.847 1202 39 14 715 1895 61285235 61284072 0.000000e+00 1622.0
4 TraesCS2D01G083600 chr2B 94.452 721 33 6 1 718 61285980 61285264 0.000000e+00 1103.0
5 TraesCS2D01G083600 chr2B 84.005 769 99 20 889 1645 23597882 23597126 0.000000e+00 717.0
6 TraesCS2D01G083600 chr2B 82.458 838 102 30 1706 2532 23597031 23596228 0.000000e+00 691.0
7 TraesCS2D01G083600 chr2B 90.260 462 23 5 27 482 61341138 61340693 4.720000e-163 584.0
8 TraesCS2D01G083600 chr2B 90.756 238 18 1 485 718 61340658 61340421 6.840000e-82 315.0
9 TraesCS2D01G083600 chr2B 86.047 129 16 2 1 128 61285313 61285186 1.590000e-28 137.0
10 TraesCS2D01G083600 chr2B 84.496 129 18 2 1 128 61340470 61340343 3.440000e-25 126.0
11 TraesCS2D01G083600 chr3D 92.736 1652 78 24 572 2198 380046630 380044996 0.000000e+00 2348.0
12 TraesCS2D01G083600 chr3D 92.764 691 46 2 2191 2880 380032050 380031363 0.000000e+00 996.0
13 TraesCS2D01G083600 chr3D 89.613 491 39 5 1 486 380047437 380046954 6.020000e-172 614.0
14 TraesCS2D01G083600 chr3D 89.720 107 11 0 2980 3086 69662081 69662187 1.590000e-28 137.0
15 TraesCS2D01G083600 chr3D 85.345 116 17 0 1 116 380046534 380046419 1.600000e-23 121.0
16 TraesCS2D01G083600 chr2A 92.806 1390 65 9 1416 2804 39468942 39470297 0.000000e+00 1980.0
17 TraesCS2D01G083600 chr2A 93.425 730 17 5 715 1425 39468191 39468908 0.000000e+00 1053.0
18 TraesCS2D01G083600 chr2A 91.842 711 49 3 3 713 39467456 39468157 0.000000e+00 983.0
19 TraesCS2D01G083600 chr2A 82.134 834 105 27 1706 2528 15011957 15011157 0.000000e+00 675.0
20 TraesCS2D01G083600 chr2A 84.634 423 52 12 883 1301 15012960 15012547 3.050000e-110 409.0
21 TraesCS2D01G083600 chr1D 94.463 307 10 1 2984 3283 62719628 62719934 1.780000e-127 466.0
22 TraesCS2D01G083600 chr1D 96.203 79 3 0 3205 3283 93957807 93957885 2.660000e-26 130.0
23 TraesCS2D01G083600 chr1D 87.500 48 3 1 466 513 318513887 318513931 6.000000e-03 52.8
24 TraesCS2D01G083600 chr5B 83.962 212 34 0 2980 3191 408392434 408392645 1.540000e-48 204.0
25 TraesCS2D01G083600 chr4B 82.547 212 37 0 2980 3191 262827577 262827366 1.560000e-43 187.0
26 TraesCS2D01G083600 chr4B 97.619 42 1 0 513 554 644679852 644679811 4.540000e-09 73.1
27 TraesCS2D01G083600 chr7D 87.324 71 4 1 486 551 601065392 601065462 3.510000e-10 76.8
28 TraesCS2D01G083600 chr7A 89.062 64 2 1 486 544 692915182 692915245 1.260000e-09 75.0
29 TraesCS2D01G083600 chr7A 91.667 48 4 0 513 560 217722916 217722869 2.110000e-07 67.6
30 TraesCS2D01G083600 chr7A 88.889 54 4 2 461 513 138965531 138965479 7.600000e-07 65.8
31 TraesCS2D01G083600 chr7B 90.909 55 3 2 461 514 104055151 104055098 4.540000e-09 73.1
32 TraesCS2D01G083600 chr6A 95.556 45 2 0 513 557 611414451 611414495 4.540000e-09 73.1
33 TraesCS2D01G083600 chr4A 92.000 50 3 1 513 562 692805574 692805526 5.880000e-08 69.4
34 TraesCS2D01G083600 chr4D 96.875 32 1 0 486 517 372364349 372364318 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G083600 chr2D 36111676 36114958 3282 False 6063.000000 6063 100.000000 1 3283 1 chr2D.!!$F1 3282
1 TraesCS2D01G083600 chr2D 36122936 36123881 945 True 1404.000000 1404 93.453000 1381 2326 1 chr2D.!!$R1 945
2 TraesCS2D01G083600 chr2B 61338118 61341138 3020 True 1105.500000 3397 89.806000 1 2982 4 chr2B.!!$R3 2981
3 TraesCS2D01G083600 chr2B 61284072 61285980 1908 True 954.000000 1622 90.782000 1 1895 3 chr2B.!!$R2 1894
4 TraesCS2D01G083600 chr2B 23596228 23597882 1654 True 704.000000 717 83.231500 889 2532 2 chr2B.!!$R1 1643
5 TraesCS2D01G083600 chr3D 380044996 380047437 2441 True 1027.666667 2348 89.231333 1 2198 3 chr3D.!!$R2 2197
6 TraesCS2D01G083600 chr3D 380031363 380032050 687 True 996.000000 996 92.764000 2191 2880 1 chr3D.!!$R1 689
7 TraesCS2D01G083600 chr2A 39467456 39470297 2841 False 1338.666667 1980 92.691000 3 2804 3 chr2A.!!$F1 2801
8 TraesCS2D01G083600 chr2A 15011157 15012960 1803 True 542.000000 675 83.384000 883 2528 2 chr2A.!!$R1 1645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 866 0.250640 GATGATGGCCTCGCAGGAAT 60.251 55.0 3.32 0.0 37.67 3.01 F
846 1152 0.747255 TGTCTCGCTCCATCTAAGCC 59.253 55.0 0.00 0.0 36.36 4.35 F
1149 1465 0.763652 TTACTACCGGTTTGGGTGCA 59.236 50.0 15.04 0.0 44.64 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 2081 0.737367 CGTCGCTCCTTTGCTCATGA 60.737 55.000 0.00 0.0 0.00 3.07 R
1684 2240 1.127951 GACGCGGACACAAACTAATGG 59.872 52.381 12.47 0.0 0.00 3.16 R
3085 3665 0.031043 CGGGAATGTACGCGGTCATA 59.969 55.000 12.47 0.0 41.29 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 215 6.661740 TTACCAAGGGATAGTGGGTTTTAT 57.338 37.500 0.00 0.00 33.14 1.40
342 345 3.818210 TCTGAAGTTTGAAAATAGGCGCA 59.182 39.130 10.83 0.00 0.00 6.09
399 402 4.214310 TCAACTTCAGCCCTTCATTTCAA 58.786 39.130 0.00 0.00 0.00 2.69
434 437 2.423538 GGATTCCACAAGTTCCCATTCG 59.576 50.000 0.00 0.00 0.00 3.34
458 472 9.080097 TCGGAGGGAAATTTCATTTTAAAACTA 57.920 29.630 19.49 0.00 31.47 2.24
482 496 9.191479 CTAAATCATATATACTTCCTCCGTCCT 57.809 37.037 0.00 0.00 0.00 3.85
537 583 7.737972 TCCATTTCTTCGACAAGTATTTTCA 57.262 32.000 0.00 0.00 0.00 2.69
570 616 7.048512 GGAGTACCAAATTACTAGCAAGATGT 58.951 38.462 0.00 0.00 32.17 3.06
591 846 7.722728 AGATGTACCTAAGGATCGTTGTATACA 59.277 37.037 10.86 14.11 0.00 2.29
611 866 0.250640 GATGATGGCCTCGCAGGAAT 60.251 55.000 3.32 0.00 37.67 3.01
682 937 3.505293 AGGTGTACGTCCTTAGTCAAGAC 59.495 47.826 0.00 0.00 33.20 3.01
693 948 5.022100 CTTAGTCAAGACAGCATGCAGCC 62.022 52.174 21.98 3.92 42.53 4.85
844 1150 2.029470 GGGATGTCTCGCTCCATCTAAG 60.029 54.545 0.00 0.00 38.02 2.18
845 1151 2.609244 GGATGTCTCGCTCCATCTAAGC 60.609 54.545 0.00 0.00 38.02 3.09
846 1152 0.747255 TGTCTCGCTCCATCTAAGCC 59.253 55.000 0.00 0.00 36.36 4.35
847 1153 1.036707 GTCTCGCTCCATCTAAGCCT 58.963 55.000 0.00 0.00 36.36 4.58
848 1154 2.231529 GTCTCGCTCCATCTAAGCCTA 58.768 52.381 0.00 0.00 36.36 3.93
849 1155 2.623889 GTCTCGCTCCATCTAAGCCTAA 59.376 50.000 0.00 0.00 36.36 2.69
850 1156 2.887783 TCTCGCTCCATCTAAGCCTAAG 59.112 50.000 0.00 0.00 36.36 2.18
864 1170 1.691434 GCCTAAGCCTAGACATGCTCT 59.309 52.381 0.00 0.00 36.66 4.09
981 1297 2.234296 CCCTTGAACCAGAGCCCCT 61.234 63.158 0.00 0.00 0.00 4.79
1149 1465 0.763652 TTACTACCGGTTTGGGTGCA 59.236 50.000 15.04 0.00 44.64 4.57
1418 1941 7.969536 ATATTGGAGTGCATGATACAGTTAC 57.030 36.000 0.00 0.00 0.00 2.50
1486 2010 3.458118 AGTGATGGGGATATCCGTTGAAA 59.542 43.478 15.69 0.00 36.71 2.69
1524 2048 0.923358 TTGGTGGGACAGGACAGTTT 59.077 50.000 0.00 0.00 41.80 2.66
1557 2081 4.885325 ACCGGTGTCATCTACAAAAAGTTT 59.115 37.500 6.12 0.00 40.63 2.66
1684 2240 9.274206 ACTACTTTTTGTCTTCACCTAAATCTC 57.726 33.333 0.00 0.00 0.00 2.75
1810 2370 4.278669 GGAGGCTCAGATAAAGACATCGTA 59.721 45.833 17.69 0.00 0.00 3.43
1824 2385 1.204704 CATCGTAGAGGCACCAAGACA 59.795 52.381 0.00 0.00 43.63 3.41
2009 2571 7.364522 TCTCAGTTTCATATGTAAGCAACAC 57.635 36.000 1.90 0.00 42.09 3.32
2081 2647 3.202906 TGTGAAGGAAGTTTCTGGAACG 58.797 45.455 0.00 0.00 43.20 3.95
2165 2731 1.523032 GACATACGGGCCTTTCGGG 60.523 63.158 0.84 0.00 38.36 5.14
2310 2879 2.062519 GCTAGCGGCTAATGCTCTTAC 58.937 52.381 11.39 0.00 42.85 2.34
2349 2918 9.912634 TTTCTCAATCAATTTGAATAACAGGAC 57.087 29.630 2.68 0.00 43.64 3.85
2477 3055 7.744087 TGTGGGATGTGATTTGCTTATATAC 57.256 36.000 0.00 0.00 0.00 1.47
2600 3178 5.533112 ACCTGATAGGAAATCTCAAGGAGA 58.467 41.667 1.13 0.00 39.43 3.71
2618 3196 2.993899 GAGATTGTTTCGTCATCCGTGT 59.006 45.455 0.00 0.00 37.94 4.49
2656 3235 2.503356 CCTCCTACTCTCATGCAGGTTT 59.497 50.000 0.00 0.00 0.00 3.27
2664 3243 4.590222 ACTCTCATGCAGGTTTGGAAAATT 59.410 37.500 0.00 0.00 0.00 1.82
2666 3245 3.998341 CTCATGCAGGTTTGGAAAATTGG 59.002 43.478 0.00 0.00 0.00 3.16
2671 3250 4.195416 GCAGGTTTGGAAAATTGGACAAA 58.805 39.130 0.00 0.00 0.00 2.83
2730 3309 9.819793 GTGTGCTCACCATTTCTCACTAGAGAA 62.820 44.444 7.70 3.95 45.87 2.87
2749 3328 5.357032 AGAGAATGTGGTAAATAAAAGGGCG 59.643 40.000 0.00 0.00 0.00 6.13
2763 3342 2.981859 AGGGCGAGTATAAGGTTGTG 57.018 50.000 0.00 0.00 0.00 3.33
2804 3383 7.394016 TCCTTCATCATAGAACTGCTTACAAA 58.606 34.615 0.00 0.00 0.00 2.83
2812 3391 7.446931 TCATAGAACTGCTTACAAAAATGGACA 59.553 33.333 0.00 0.00 0.00 4.02
2815 3394 5.590530 ACTGCTTACAAAAATGGACACAA 57.409 34.783 0.00 0.00 0.00 3.33
2834 3413 4.516698 CACAATAGCTCTTTGTTCTGTGGT 59.483 41.667 11.23 0.00 35.18 4.16
2866 3445 6.753279 CCTACAATAATTTTGGACACATGCTG 59.247 38.462 0.00 0.00 0.00 4.41
2887 3466 4.800023 TGGTTACCTCTAGGATCGAATCA 58.200 43.478 2.07 0.00 38.94 2.57
2891 3470 4.186077 ACCTCTAGGATCGAATCAGGAA 57.814 45.455 2.23 0.00 38.94 3.36
2892 3471 4.547671 ACCTCTAGGATCGAATCAGGAAA 58.452 43.478 2.23 0.00 38.94 3.13
2911 3490 8.336235 TCAGGAAATGGTTAACCTAGATCAAAT 58.664 33.333 24.78 5.17 36.82 2.32
2918 3497 9.853177 ATGGTTAACCTAGATCAAATAAGGAAG 57.147 33.333 24.78 0.00 36.82 3.46
2945 3524 5.355350 GGACAGTAATTTGTGCTGCTCTAAT 59.645 40.000 0.00 3.34 43.33 1.73
2947 3526 5.032863 CAGTAATTTGTGCTGCTCTAATGC 58.967 41.667 11.03 8.18 32.85 3.56
2990 3570 8.700439 TTATTTCACTTTATATACCCAAGCCC 57.300 34.615 0.00 0.00 0.00 5.19
2991 3571 4.717279 TCACTTTATATACCCAAGCCCC 57.283 45.455 0.00 0.00 0.00 5.80
2992 3572 4.312487 TCACTTTATATACCCAAGCCCCT 58.688 43.478 0.00 0.00 0.00 4.79
2993 3573 5.478844 TCACTTTATATACCCAAGCCCCTA 58.521 41.667 0.00 0.00 0.00 3.53
2994 3574 6.095680 TCACTTTATATACCCAAGCCCCTAT 58.904 40.000 0.00 0.00 0.00 2.57
2995 3575 7.257893 TCACTTTATATACCCAAGCCCCTATA 58.742 38.462 0.00 0.00 0.00 1.31
2996 3576 7.910010 TCACTTTATATACCCAAGCCCCTATAT 59.090 37.037 0.00 0.00 0.00 0.86
2997 3577 8.211629 CACTTTATATACCCAAGCCCCTATATC 58.788 40.741 0.00 0.00 0.00 1.63
2998 3578 8.136248 ACTTTATATACCCAAGCCCCTATATCT 58.864 37.037 0.00 0.00 0.00 1.98
2999 3579 7.931015 TTATATACCCAAGCCCCTATATCTG 57.069 40.000 0.00 0.00 0.00 2.90
3000 3580 1.747444 ACCCAAGCCCCTATATCTGG 58.253 55.000 0.00 0.00 0.00 3.86
3001 3581 0.995024 CCCAAGCCCCTATATCTGGG 59.005 60.000 5.29 5.29 45.22 4.45
3012 3592 4.952335 CCCTATATCTGGGGATGAATTTGC 59.048 45.833 0.00 0.00 46.13 3.68
3013 3593 5.281401 CCCTATATCTGGGGATGAATTTGCT 60.281 44.000 0.00 0.00 46.13 3.91
3014 3594 6.251471 CCTATATCTGGGGATGAATTTGCTT 58.749 40.000 0.00 0.00 33.71 3.91
3015 3595 6.376581 CCTATATCTGGGGATGAATTTGCTTC 59.623 42.308 0.00 0.00 33.71 3.86
3016 3596 3.744940 TCTGGGGATGAATTTGCTTCT 57.255 42.857 0.00 0.00 34.75 2.85
3017 3597 4.860802 TCTGGGGATGAATTTGCTTCTA 57.139 40.909 0.00 0.00 34.75 2.10
3018 3598 4.526970 TCTGGGGATGAATTTGCTTCTAC 58.473 43.478 0.00 0.00 34.75 2.59
3019 3599 3.278574 TGGGGATGAATTTGCTTCTACG 58.721 45.455 0.00 0.00 34.75 3.51
3020 3600 3.279434 GGGGATGAATTTGCTTCTACGT 58.721 45.455 0.00 0.00 34.75 3.57
3021 3601 3.312697 GGGGATGAATTTGCTTCTACGTC 59.687 47.826 0.00 0.00 34.75 4.34
3022 3602 4.192317 GGGATGAATTTGCTTCTACGTCT 58.808 43.478 0.00 0.00 34.75 4.18
3023 3603 4.271291 GGGATGAATTTGCTTCTACGTCTC 59.729 45.833 0.00 0.00 34.75 3.36
3024 3604 4.026475 GGATGAATTTGCTTCTACGTCTCG 60.026 45.833 0.00 0.00 34.75 4.04
3025 3605 2.666508 TGAATTTGCTTCTACGTCTCGC 59.333 45.455 0.00 0.00 34.75 5.03
3026 3606 1.641577 ATTTGCTTCTACGTCTCGCC 58.358 50.000 0.00 0.00 0.00 5.54
3027 3607 0.315886 TTTGCTTCTACGTCTCGCCA 59.684 50.000 0.00 0.00 0.00 5.69
3028 3608 0.388134 TTGCTTCTACGTCTCGCCAC 60.388 55.000 0.00 0.00 0.00 5.01
3029 3609 1.241990 TGCTTCTACGTCTCGCCACT 61.242 55.000 0.00 0.00 0.00 4.00
3030 3610 0.109226 GCTTCTACGTCTCGCCACTT 60.109 55.000 0.00 0.00 0.00 3.16
3031 3611 1.618861 CTTCTACGTCTCGCCACTTG 58.381 55.000 0.00 0.00 0.00 3.16
3032 3612 0.242825 TTCTACGTCTCGCCACTTGG 59.757 55.000 0.00 0.00 38.53 3.61
3033 3613 0.892358 TCTACGTCTCGCCACTTGGT 60.892 55.000 0.00 0.00 37.57 3.67
3034 3614 0.038526 CTACGTCTCGCCACTTGGTT 60.039 55.000 0.00 0.00 37.57 3.67
3035 3615 0.319211 TACGTCTCGCCACTTGGTTG 60.319 55.000 0.00 0.00 37.57 3.77
3036 3616 1.300620 CGTCTCGCCACTTGGTTGA 60.301 57.895 0.00 0.00 37.57 3.18
3037 3617 0.878523 CGTCTCGCCACTTGGTTGAA 60.879 55.000 0.00 0.00 37.57 2.69
3038 3618 1.305201 GTCTCGCCACTTGGTTGAAA 58.695 50.000 0.00 0.00 37.57 2.69
3039 3619 1.673920 GTCTCGCCACTTGGTTGAAAA 59.326 47.619 0.00 0.00 37.57 2.29
3040 3620 2.293399 GTCTCGCCACTTGGTTGAAAAT 59.707 45.455 0.00 0.00 37.57 1.82
3041 3621 2.293122 TCTCGCCACTTGGTTGAAAATG 59.707 45.455 0.00 0.00 37.57 2.32
3042 3622 2.293122 CTCGCCACTTGGTTGAAAATGA 59.707 45.455 0.00 0.00 37.57 2.57
3043 3623 2.034053 TCGCCACTTGGTTGAAAATGAC 59.966 45.455 0.00 0.00 37.57 3.06
3044 3624 2.754472 GCCACTTGGTTGAAAATGACC 58.246 47.619 0.00 0.00 37.57 4.02
3045 3625 2.547855 GCCACTTGGTTGAAAATGACCC 60.548 50.000 0.00 0.00 37.57 4.46
3046 3626 2.965147 CCACTTGGTTGAAAATGACCCT 59.035 45.455 0.00 0.00 34.99 4.34
3047 3627 3.243839 CCACTTGGTTGAAAATGACCCTG 60.244 47.826 0.00 0.00 34.99 4.45
3048 3628 3.384467 CACTTGGTTGAAAATGACCCTGT 59.616 43.478 0.00 0.00 34.99 4.00
3049 3629 3.384467 ACTTGGTTGAAAATGACCCTGTG 59.616 43.478 0.00 0.00 34.99 3.66
3050 3630 2.315176 TGGTTGAAAATGACCCTGTGG 58.685 47.619 0.00 0.00 34.99 4.17
3059 3639 3.990815 ACCCTGTGGTAAACCGGT 58.009 55.556 0.00 0.00 45.45 5.28
3060 3640 2.233603 ACCCTGTGGTAAACCGGTT 58.766 52.632 15.86 15.86 45.45 4.44
3061 3641 0.109153 ACCCTGTGGTAAACCGGTTC 59.891 55.000 22.53 9.09 45.45 3.62
3062 3642 0.952010 CCCTGTGGTAAACCGGTTCG 60.952 60.000 22.53 4.30 39.43 3.95
3063 3643 0.249996 CCTGTGGTAAACCGGTTCGT 60.250 55.000 22.53 8.74 39.43 3.85
3064 3644 0.863144 CTGTGGTAAACCGGTTCGTG 59.137 55.000 22.53 3.32 39.43 4.35
3065 3645 0.532417 TGTGGTAAACCGGTTCGTGG 60.532 55.000 22.53 0.00 39.43 4.94
3066 3646 1.597578 TGGTAAACCGGTTCGTGGC 60.598 57.895 22.53 8.96 39.43 5.01
3067 3647 1.597578 GGTAAACCGGTTCGTGGCA 60.598 57.895 22.53 0.00 0.00 4.92
3068 3648 1.570967 GTAAACCGGTTCGTGGCAC 59.429 57.895 22.53 7.79 0.00 5.01
3069 3649 1.955157 TAAACCGGTTCGTGGCACG 60.955 57.895 32.75 32.75 44.19 5.34
3070 3650 2.641439 TAAACCGGTTCGTGGCACGT 62.641 55.000 35.65 18.78 43.14 4.49
3073 3653 2.354891 CGGTTCGTGGCACGTGTA 60.355 61.111 35.65 21.09 43.14 2.90
3074 3654 1.735198 CGGTTCGTGGCACGTGTAT 60.735 57.895 35.65 0.00 43.14 2.29
3075 3655 1.286354 CGGTTCGTGGCACGTGTATT 61.286 55.000 35.65 0.00 43.14 1.89
3076 3656 1.712401 GGTTCGTGGCACGTGTATTA 58.288 50.000 35.65 15.99 43.14 0.98
3077 3657 2.067766 GGTTCGTGGCACGTGTATTAA 58.932 47.619 35.65 20.80 43.14 1.40
3078 3658 2.479656 GGTTCGTGGCACGTGTATTAAA 59.520 45.455 35.65 20.10 43.14 1.52
3079 3659 3.125658 GGTTCGTGGCACGTGTATTAAAT 59.874 43.478 35.65 0.00 43.14 1.40
3080 3660 4.378666 GGTTCGTGGCACGTGTATTAAATT 60.379 41.667 35.65 0.00 43.14 1.82
3081 3661 4.329296 TCGTGGCACGTGTATTAAATTG 57.671 40.909 35.65 6.94 43.14 2.32
3082 3662 3.125487 TCGTGGCACGTGTATTAAATTGG 59.875 43.478 35.65 6.49 43.14 3.16
3083 3663 3.729462 CGTGGCACGTGTATTAAATTGGG 60.729 47.826 30.56 0.00 36.74 4.12
3084 3664 3.440872 GTGGCACGTGTATTAAATTGGGA 59.559 43.478 18.38 0.00 0.00 4.37
3085 3665 4.097286 GTGGCACGTGTATTAAATTGGGAT 59.903 41.667 18.38 0.00 0.00 3.85
3086 3666 5.297278 GTGGCACGTGTATTAAATTGGGATA 59.703 40.000 18.38 0.00 0.00 2.59
3087 3667 6.016610 GTGGCACGTGTATTAAATTGGGATAT 60.017 38.462 18.38 0.00 0.00 1.63
3088 3668 6.016693 TGGCACGTGTATTAAATTGGGATATG 60.017 38.462 18.38 0.00 0.00 1.78
3089 3669 6.205853 GGCACGTGTATTAAATTGGGATATGA 59.794 38.462 18.38 0.00 0.00 2.15
3090 3670 7.075741 GCACGTGTATTAAATTGGGATATGAC 58.924 38.462 18.38 0.00 0.00 3.06
3091 3671 7.581476 CACGTGTATTAAATTGGGATATGACC 58.419 38.462 7.58 0.00 0.00 4.02
3092 3672 6.425721 ACGTGTATTAAATTGGGATATGACCG 59.574 38.462 0.00 0.00 0.00 4.79
3093 3673 6.608610 GTGTATTAAATTGGGATATGACCGC 58.391 40.000 0.00 0.00 0.00 5.68
3094 3674 5.410132 TGTATTAAATTGGGATATGACCGCG 59.590 40.000 0.00 0.00 0.00 6.46
3095 3675 2.341846 AAATTGGGATATGACCGCGT 57.658 45.000 4.92 0.00 0.00 6.01
3096 3676 3.478857 AAATTGGGATATGACCGCGTA 57.521 42.857 4.92 0.00 0.00 4.42
3097 3677 2.450609 ATTGGGATATGACCGCGTAC 57.549 50.000 4.92 0.00 0.00 3.67
3098 3678 1.112950 TTGGGATATGACCGCGTACA 58.887 50.000 4.92 5.00 0.00 2.90
3099 3679 1.334160 TGGGATATGACCGCGTACAT 58.666 50.000 16.77 16.77 0.00 2.29
3100 3680 1.689813 TGGGATATGACCGCGTACATT 59.310 47.619 17.53 8.23 0.00 2.71
3101 3681 2.288579 TGGGATATGACCGCGTACATTC 60.289 50.000 17.53 14.21 0.00 2.67
3102 3682 2.334838 GGATATGACCGCGTACATTCC 58.665 52.381 17.53 17.70 0.00 3.01
3103 3683 2.334838 GATATGACCGCGTACATTCCC 58.665 52.381 17.53 6.73 0.00 3.97
3104 3684 0.031043 TATGACCGCGTACATTCCCG 59.969 55.000 17.53 0.00 0.00 5.14
3105 3685 1.952102 ATGACCGCGTACATTCCCGT 61.952 55.000 4.92 0.00 0.00 5.28
3106 3686 2.125832 ACCGCGTACATTCCCGTG 60.126 61.111 4.92 0.00 0.00 4.94
3107 3687 2.888534 CCGCGTACATTCCCGTGG 60.889 66.667 4.92 0.00 46.75 4.94
3108 3688 2.125832 CGCGTACATTCCCGTGGT 60.126 61.111 0.00 0.00 0.00 4.16
3109 3689 2.449525 CGCGTACATTCCCGTGGTG 61.450 63.158 0.00 0.00 0.00 4.17
3110 3690 1.079681 GCGTACATTCCCGTGGTGA 60.080 57.895 0.00 0.00 0.00 4.02
3111 3691 1.356527 GCGTACATTCCCGTGGTGAC 61.357 60.000 0.00 0.00 0.00 3.67
3112 3692 0.245539 CGTACATTCCCGTGGTGACT 59.754 55.000 0.00 0.00 0.00 3.41
3113 3693 1.734707 CGTACATTCCCGTGGTGACTC 60.735 57.143 0.00 0.00 0.00 3.36
3114 3694 1.549170 GTACATTCCCGTGGTGACTCT 59.451 52.381 0.00 0.00 0.00 3.24
3115 3695 1.933021 ACATTCCCGTGGTGACTCTA 58.067 50.000 0.00 0.00 0.00 2.43
3116 3696 2.253610 ACATTCCCGTGGTGACTCTAA 58.746 47.619 0.00 0.00 0.00 2.10
3117 3697 2.233922 ACATTCCCGTGGTGACTCTAAG 59.766 50.000 0.00 0.00 0.00 2.18
3118 3698 2.005370 TTCCCGTGGTGACTCTAAGT 57.995 50.000 0.00 0.00 0.00 2.24
3119 3699 2.005370 TCCCGTGGTGACTCTAAGTT 57.995 50.000 0.00 0.00 0.00 2.66
3120 3700 2.322658 TCCCGTGGTGACTCTAAGTTT 58.677 47.619 0.00 0.00 0.00 2.66
3121 3701 2.036733 TCCCGTGGTGACTCTAAGTTTG 59.963 50.000 0.00 0.00 0.00 2.93
3122 3702 2.224209 CCCGTGGTGACTCTAAGTTTGT 60.224 50.000 0.00 0.00 0.00 2.83
3123 3703 2.800544 CCGTGGTGACTCTAAGTTTGTG 59.199 50.000 0.00 0.00 0.00 3.33
3124 3704 3.454375 CGTGGTGACTCTAAGTTTGTGT 58.546 45.455 0.00 0.00 0.00 3.72
3125 3705 3.869246 CGTGGTGACTCTAAGTTTGTGTT 59.131 43.478 0.00 0.00 0.00 3.32
3126 3706 4.025979 CGTGGTGACTCTAAGTTTGTGTTC 60.026 45.833 0.00 0.00 0.00 3.18
3127 3707 4.873827 GTGGTGACTCTAAGTTTGTGTTCA 59.126 41.667 0.00 0.00 0.00 3.18
3128 3708 5.353123 GTGGTGACTCTAAGTTTGTGTTCAA 59.647 40.000 0.00 0.00 0.00 2.69
3129 3709 5.941058 TGGTGACTCTAAGTTTGTGTTCAAA 59.059 36.000 0.00 0.00 40.64 2.69
3130 3710 6.431543 TGGTGACTCTAAGTTTGTGTTCAAAA 59.568 34.615 0.00 0.00 43.78 2.44
3131 3711 7.122055 TGGTGACTCTAAGTTTGTGTTCAAAAT 59.878 33.333 0.00 0.00 43.78 1.82
3133 3713 9.353999 GTGACTCTAAGTTTGTGTTCAAAATTT 57.646 29.630 10.61 4.97 45.33 1.82
3134 3714 9.921637 TGACTCTAAGTTTGTGTTCAAAATTTT 57.078 25.926 10.61 0.00 45.33 1.82
3145 3725 4.736562 GTTCAAAATTTTCTGAACGTGCG 58.263 39.130 16.15 0.00 41.33 5.34
3146 3726 4.022464 TCAAAATTTTCTGAACGTGCGT 57.978 36.364 0.00 0.00 0.00 5.24
3147 3727 5.158101 TCAAAATTTTCTGAACGTGCGTA 57.842 34.783 0.00 0.00 0.00 4.42
3148 3728 5.753744 TCAAAATTTTCTGAACGTGCGTAT 58.246 33.333 0.00 0.00 0.00 3.06
3149 3729 5.849081 TCAAAATTTTCTGAACGTGCGTATC 59.151 36.000 0.00 0.00 0.00 2.24
3150 3730 5.607119 AAATTTTCTGAACGTGCGTATCT 57.393 34.783 0.00 0.00 0.00 1.98
3151 3731 6.715344 AAATTTTCTGAACGTGCGTATCTA 57.285 33.333 0.00 0.00 0.00 1.98
3152 3732 5.697848 ATTTTCTGAACGTGCGTATCTAC 57.302 39.130 0.00 0.00 0.00 2.59
3153 3733 4.430137 TTTCTGAACGTGCGTATCTACT 57.570 40.909 0.00 0.00 0.00 2.57
3154 3734 4.430137 TTCTGAACGTGCGTATCTACTT 57.570 40.909 0.00 0.00 0.00 2.24
3155 3735 3.754955 TCTGAACGTGCGTATCTACTTG 58.245 45.455 0.00 0.00 0.00 3.16
3156 3736 3.437741 TCTGAACGTGCGTATCTACTTGA 59.562 43.478 0.00 0.00 0.00 3.02
3157 3737 4.095932 TCTGAACGTGCGTATCTACTTGAT 59.904 41.667 0.00 0.00 39.11 2.57
3158 3738 4.740268 TGAACGTGCGTATCTACTTGATT 58.260 39.130 0.00 0.00 36.65 2.57
3159 3739 4.561213 TGAACGTGCGTATCTACTTGATTG 59.439 41.667 0.00 0.00 36.65 2.67
3160 3740 3.444916 ACGTGCGTATCTACTTGATTGG 58.555 45.455 0.00 0.00 36.65 3.16
3161 3741 3.119245 ACGTGCGTATCTACTTGATTGGT 60.119 43.478 0.00 0.00 36.65 3.67
3162 3742 3.863424 CGTGCGTATCTACTTGATTGGTT 59.137 43.478 0.00 0.00 36.65 3.67
3163 3743 4.026804 CGTGCGTATCTACTTGATTGGTTC 60.027 45.833 0.00 0.00 36.65 3.62
3164 3744 4.026804 GTGCGTATCTACTTGATTGGTTCG 60.027 45.833 0.00 0.00 36.65 3.95
3165 3745 4.110482 GCGTATCTACTTGATTGGTTCGT 58.890 43.478 0.00 0.00 36.65 3.85
3166 3746 4.206609 GCGTATCTACTTGATTGGTTCGTC 59.793 45.833 0.00 0.00 36.65 4.20
3167 3747 5.579718 CGTATCTACTTGATTGGTTCGTCT 58.420 41.667 0.00 0.00 36.65 4.18
3168 3748 6.722301 CGTATCTACTTGATTGGTTCGTCTA 58.278 40.000 0.00 0.00 36.65 2.59
3169 3749 6.851837 CGTATCTACTTGATTGGTTCGTCTAG 59.148 42.308 0.00 0.00 36.65 2.43
3170 3750 4.995124 TCTACTTGATTGGTTCGTCTAGC 58.005 43.478 0.00 0.00 0.00 3.42
3171 3751 2.607187 ACTTGATTGGTTCGTCTAGCG 58.393 47.619 0.83 0.83 43.01 4.26
3172 3752 2.029290 ACTTGATTGGTTCGTCTAGCGT 60.029 45.455 6.49 0.00 42.13 5.07
3173 3753 2.736144 TGATTGGTTCGTCTAGCGTT 57.264 45.000 6.49 0.00 42.13 4.84
3174 3754 3.034721 TGATTGGTTCGTCTAGCGTTT 57.965 42.857 6.49 0.00 42.13 3.60
3175 3755 3.395639 TGATTGGTTCGTCTAGCGTTTT 58.604 40.909 6.49 0.00 42.13 2.43
3176 3756 3.430895 TGATTGGTTCGTCTAGCGTTTTC 59.569 43.478 6.49 0.13 42.13 2.29
3177 3757 2.806608 TGGTTCGTCTAGCGTTTTCT 57.193 45.000 6.49 0.00 42.13 2.52
3178 3758 2.400399 TGGTTCGTCTAGCGTTTTCTG 58.600 47.619 6.49 0.00 42.13 3.02
3179 3759 2.223876 TGGTTCGTCTAGCGTTTTCTGT 60.224 45.455 6.49 0.00 42.13 3.41
3180 3760 2.155155 GGTTCGTCTAGCGTTTTCTGTG 59.845 50.000 6.49 0.00 42.13 3.66
3181 3761 2.787601 TCGTCTAGCGTTTTCTGTGT 57.212 45.000 6.49 0.00 42.13 3.72
3182 3762 3.088194 TCGTCTAGCGTTTTCTGTGTT 57.912 42.857 6.49 0.00 42.13 3.32
3183 3763 2.792674 TCGTCTAGCGTTTTCTGTGTTG 59.207 45.455 6.49 0.00 42.13 3.33
3184 3764 2.538449 CGTCTAGCGTTTTCTGTGTTGT 59.462 45.455 0.00 0.00 35.54 3.32
3185 3765 3.601586 CGTCTAGCGTTTTCTGTGTTGTG 60.602 47.826 0.00 0.00 35.54 3.33
3186 3766 3.308866 GTCTAGCGTTTTCTGTGTTGTGT 59.691 43.478 0.00 0.00 0.00 3.72
3187 3767 2.542766 AGCGTTTTCTGTGTTGTGTG 57.457 45.000 0.00 0.00 0.00 3.82
3188 3768 1.132262 AGCGTTTTCTGTGTTGTGTGG 59.868 47.619 0.00 0.00 0.00 4.17
3189 3769 1.797348 GCGTTTTCTGTGTTGTGTGGG 60.797 52.381 0.00 0.00 0.00 4.61
3190 3770 1.797348 CGTTTTCTGTGTTGTGTGGGC 60.797 52.381 0.00 0.00 0.00 5.36
3191 3771 0.820871 TTTTCTGTGTTGTGTGGGCC 59.179 50.000 0.00 0.00 0.00 5.80
3192 3772 0.323816 TTTCTGTGTTGTGTGGGCCA 60.324 50.000 0.00 0.00 0.00 5.36
3193 3773 0.106268 TTCTGTGTTGTGTGGGCCAT 60.106 50.000 10.70 0.00 0.00 4.40
3194 3774 0.822944 TCTGTGTTGTGTGGGCCATG 60.823 55.000 10.70 0.00 0.00 3.66
3195 3775 1.808531 CTGTGTTGTGTGGGCCATGG 61.809 60.000 10.70 7.63 0.00 3.66
3196 3776 1.832167 GTGTTGTGTGGGCCATGGT 60.832 57.895 10.70 0.00 0.00 3.55
3197 3777 1.075674 TGTTGTGTGGGCCATGGTT 60.076 52.632 10.70 0.00 0.00 3.67
3198 3778 1.367102 GTTGTGTGGGCCATGGTTG 59.633 57.895 10.70 0.00 0.00 3.77
3199 3779 1.112315 GTTGTGTGGGCCATGGTTGA 61.112 55.000 10.70 0.00 0.00 3.18
3200 3780 0.397675 TTGTGTGGGCCATGGTTGAA 60.398 50.000 10.70 0.00 0.00 2.69
3201 3781 0.178938 TGTGTGGGCCATGGTTGAAT 60.179 50.000 10.70 0.00 0.00 2.57
3202 3782 0.975887 GTGTGGGCCATGGTTGAATT 59.024 50.000 10.70 0.00 0.00 2.17
3203 3783 1.066929 GTGTGGGCCATGGTTGAATTC 60.067 52.381 10.70 0.00 0.00 2.17
3204 3784 0.173255 GTGGGCCATGGTTGAATTCG 59.827 55.000 10.70 0.00 0.00 3.34
3205 3785 1.141665 GGGCCATGGTTGAATTCGC 59.858 57.895 14.67 0.00 0.00 4.70
3206 3786 1.226660 GGCCATGGTTGAATTCGCG 60.227 57.895 14.67 0.00 0.00 5.87
3207 3787 1.226660 GCCATGGTTGAATTCGCGG 60.227 57.895 14.67 0.00 0.00 6.46
3208 3788 1.933115 GCCATGGTTGAATTCGCGGT 61.933 55.000 14.67 0.00 0.00 5.68
3209 3789 0.098728 CCATGGTTGAATTCGCGGTC 59.901 55.000 6.13 1.95 0.00 4.79
3210 3790 1.086696 CATGGTTGAATTCGCGGTCT 58.913 50.000 6.13 0.00 0.00 3.85
3211 3791 1.086696 ATGGTTGAATTCGCGGTCTG 58.913 50.000 6.13 0.00 0.00 3.51
3212 3792 1.134694 GGTTGAATTCGCGGTCTGC 59.865 57.895 6.13 0.00 41.47 4.26
3213 3793 1.573829 GGTTGAATTCGCGGTCTGCA 61.574 55.000 6.13 0.00 46.97 4.41
3214 3794 0.179215 GTTGAATTCGCGGTCTGCAG 60.179 55.000 7.63 7.63 46.97 4.41
3215 3795 1.911293 TTGAATTCGCGGTCTGCAGC 61.911 55.000 9.47 4.04 46.97 5.25
3216 3796 2.358615 AATTCGCGGTCTGCAGCA 60.359 55.556 9.47 0.00 46.97 4.41
3217 3797 1.709147 GAATTCGCGGTCTGCAGCAT 61.709 55.000 9.47 0.00 46.97 3.79
3218 3798 0.461870 AATTCGCGGTCTGCAGCATA 60.462 50.000 9.47 0.00 46.97 3.14
3219 3799 0.250038 ATTCGCGGTCTGCAGCATAT 60.250 50.000 9.47 0.00 46.97 1.78
3220 3800 0.875908 TTCGCGGTCTGCAGCATATC 60.876 55.000 9.47 0.00 46.97 1.63
3221 3801 1.300465 CGCGGTCTGCAGCATATCT 60.300 57.895 9.47 0.00 46.97 1.98
3222 3802 1.280886 CGCGGTCTGCAGCATATCTC 61.281 60.000 9.47 0.00 46.97 2.75
3223 3803 1.280886 GCGGTCTGCAGCATATCTCG 61.281 60.000 9.47 5.89 45.45 4.04
3224 3804 0.665670 CGGTCTGCAGCATATCTCGG 60.666 60.000 9.47 0.00 0.00 4.63
3225 3805 0.676184 GGTCTGCAGCATATCTCGGA 59.324 55.000 9.47 0.00 0.00 4.55
3226 3806 1.604185 GGTCTGCAGCATATCTCGGAC 60.604 57.143 9.47 0.00 0.00 4.79
3227 3807 1.067669 GTCTGCAGCATATCTCGGACA 59.932 52.381 9.47 0.00 0.00 4.02
3228 3808 1.966354 TCTGCAGCATATCTCGGACAT 59.034 47.619 9.47 0.00 0.00 3.06
3229 3809 2.366590 TCTGCAGCATATCTCGGACATT 59.633 45.455 9.47 0.00 0.00 2.71
3230 3810 2.735663 CTGCAGCATATCTCGGACATTC 59.264 50.000 0.00 0.00 0.00 2.67
3231 3811 2.072298 GCAGCATATCTCGGACATTCC 58.928 52.381 0.00 0.00 0.00 3.01
3232 3812 2.289320 GCAGCATATCTCGGACATTCCT 60.289 50.000 0.00 0.00 33.30 3.36
3233 3813 3.805108 GCAGCATATCTCGGACATTCCTT 60.805 47.826 0.00 0.00 33.30 3.36
3234 3814 4.384056 CAGCATATCTCGGACATTCCTTT 58.616 43.478 0.00 0.00 33.30 3.11
3235 3815 4.818546 CAGCATATCTCGGACATTCCTTTT 59.181 41.667 0.00 0.00 33.30 2.27
3236 3816 4.818546 AGCATATCTCGGACATTCCTTTTG 59.181 41.667 0.00 0.00 33.30 2.44
3237 3817 4.576463 GCATATCTCGGACATTCCTTTTGT 59.424 41.667 0.00 0.00 33.30 2.83
3238 3818 5.277538 GCATATCTCGGACATTCCTTTTGTC 60.278 44.000 0.00 0.00 42.20 3.18
3239 3819 3.762407 TCTCGGACATTCCTTTTGTCA 57.238 42.857 6.20 0.00 44.22 3.58
3240 3820 4.286297 TCTCGGACATTCCTTTTGTCAT 57.714 40.909 6.20 0.00 44.22 3.06
3241 3821 5.414789 TCTCGGACATTCCTTTTGTCATA 57.585 39.130 6.20 0.00 44.22 2.15
3242 3822 5.989477 TCTCGGACATTCCTTTTGTCATAT 58.011 37.500 6.20 0.00 44.22 1.78
3243 3823 5.817296 TCTCGGACATTCCTTTTGTCATATG 59.183 40.000 0.00 0.00 44.22 1.78
3244 3824 5.496556 TCGGACATTCCTTTTGTCATATGT 58.503 37.500 1.90 0.00 44.22 2.29
3245 3825 5.584649 TCGGACATTCCTTTTGTCATATGTC 59.415 40.000 1.90 0.00 44.22 3.06
3246 3826 5.353956 CGGACATTCCTTTTGTCATATGTCA 59.646 40.000 13.15 0.00 44.22 3.58
3247 3827 6.457392 CGGACATTCCTTTTGTCATATGTCAG 60.457 42.308 13.15 6.96 44.22 3.51
3248 3828 6.375455 GGACATTCCTTTTGTCATATGTCAGT 59.625 38.462 13.15 0.00 44.22 3.41
3249 3829 7.094205 GGACATTCCTTTTGTCATATGTCAGTT 60.094 37.037 13.15 0.00 44.22 3.16
3250 3830 7.596494 ACATTCCTTTTGTCATATGTCAGTTG 58.404 34.615 1.90 0.00 0.00 3.16
3251 3831 7.231317 ACATTCCTTTTGTCATATGTCAGTTGT 59.769 33.333 1.90 0.00 0.00 3.32
3252 3832 6.558771 TCCTTTTGTCATATGTCAGTTGTG 57.441 37.500 1.90 0.00 0.00 3.33
3253 3833 5.048782 TCCTTTTGTCATATGTCAGTTGTGC 60.049 40.000 1.90 0.00 0.00 4.57
3254 3834 5.278414 CCTTTTGTCATATGTCAGTTGTGCA 60.278 40.000 1.90 0.00 0.00 4.57
3255 3835 5.963176 TTTGTCATATGTCAGTTGTGCAT 57.037 34.783 1.90 0.00 0.00 3.96
3256 3836 4.950434 TGTCATATGTCAGTTGTGCATG 57.050 40.909 1.90 0.00 0.00 4.06
3257 3837 3.127376 TGTCATATGTCAGTTGTGCATGC 59.873 43.478 11.82 11.82 0.00 4.06
3258 3838 2.352342 TCATATGTCAGTTGTGCATGCG 59.648 45.455 14.09 0.00 0.00 4.73
3259 3839 1.807139 TATGTCAGTTGTGCATGCGT 58.193 45.000 14.09 0.00 0.00 5.24
3260 3840 0.953727 ATGTCAGTTGTGCATGCGTT 59.046 45.000 14.09 0.00 0.00 4.84
3261 3841 0.737804 TGTCAGTTGTGCATGCGTTT 59.262 45.000 14.09 0.00 0.00 3.60
3262 3842 1.122849 GTCAGTTGTGCATGCGTTTG 58.877 50.000 14.09 7.14 0.00 2.93
3263 3843 1.020437 TCAGTTGTGCATGCGTTTGA 58.980 45.000 14.09 9.38 0.00 2.69
3264 3844 1.608109 TCAGTTGTGCATGCGTTTGAT 59.392 42.857 14.09 0.00 0.00 2.57
3265 3845 2.034432 TCAGTTGTGCATGCGTTTGATT 59.966 40.909 14.09 0.00 0.00 2.57
3266 3846 2.796031 CAGTTGTGCATGCGTTTGATTT 59.204 40.909 14.09 0.00 0.00 2.17
3267 3847 2.796031 AGTTGTGCATGCGTTTGATTTG 59.204 40.909 14.09 0.00 0.00 2.32
3268 3848 2.789491 TGTGCATGCGTTTGATTTGA 57.211 40.000 14.09 0.00 0.00 2.69
3269 3849 3.300852 TGTGCATGCGTTTGATTTGAT 57.699 38.095 14.09 0.00 0.00 2.57
3270 3850 3.244156 TGTGCATGCGTTTGATTTGATC 58.756 40.909 14.09 0.00 0.00 2.92
3271 3851 3.244156 GTGCATGCGTTTGATTTGATCA 58.756 40.909 14.09 0.00 37.55 2.92
3272 3852 3.059834 GTGCATGCGTTTGATTTGATCAC 59.940 43.478 14.09 0.00 39.39 3.06
3273 3853 2.277057 GCATGCGTTTGATTTGATCACG 59.723 45.455 0.00 0.00 39.39 4.35
3274 3854 3.491356 CATGCGTTTGATTTGATCACGT 58.509 40.909 0.00 0.00 39.39 4.49
3275 3855 4.646960 CATGCGTTTGATTTGATCACGTA 58.353 39.130 0.00 0.00 39.39 3.57
3276 3856 4.937696 TGCGTTTGATTTGATCACGTAT 57.062 36.364 0.00 0.00 39.39 3.06
3277 3857 4.646960 TGCGTTTGATTTGATCACGTATG 58.353 39.130 0.00 0.00 39.39 2.39
3278 3858 4.153296 TGCGTTTGATTTGATCACGTATGT 59.847 37.500 0.00 0.00 39.39 2.29
3279 3859 5.086058 GCGTTTGATTTGATCACGTATGTT 58.914 37.500 0.00 0.00 39.39 2.71
3280 3860 5.567534 GCGTTTGATTTGATCACGTATGTTT 59.432 36.000 0.00 0.00 39.39 2.83
3281 3861 6.236941 GCGTTTGATTTGATCACGTATGTTTC 60.237 38.462 0.00 0.00 39.39 2.78
3282 3862 7.015289 CGTTTGATTTGATCACGTATGTTTCT 58.985 34.615 0.00 0.00 39.39 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 122 8.612619 CATAATTAGGACAACGTTTGCTATTCT 58.387 33.333 0.00 0.00 0.00 2.40
239 242 9.458727 AATTTCACATGATCATTGAGAACTACT 57.541 29.630 5.16 0.00 0.00 2.57
307 310 1.346068 ACTTCAGAGCCCAAGTGTCTC 59.654 52.381 0.00 0.00 31.42 3.36
342 345 2.672098 AGAGAGATAGGGTCGTGCATT 58.328 47.619 0.00 0.00 0.00 3.56
458 472 7.093289 CCAGGACGGAGGAAGTATATATGATTT 60.093 40.741 0.00 0.00 36.56 2.17
482 496 2.571653 ACTTGTCGGAGAAATGGATCCA 59.428 45.455 18.88 18.88 39.69 3.41
537 583 2.249309 ATTTGGTACTCCCTCCGTCT 57.751 50.000 0.00 0.00 0.00 4.18
570 616 7.940688 TCATCTGTATACAACGATCCTTAGGTA 59.059 37.037 7.06 0.00 0.00 3.08
591 846 1.340399 TTCCTGCGAGGCCATCATCT 61.340 55.000 5.01 0.00 34.61 2.90
611 866 6.888105 TGTGCTCACAATCAGGATAAGATTA 58.112 36.000 0.00 0.00 38.56 1.75
682 937 2.475466 CGGGTAAGGCTGCATGCTG 61.475 63.158 20.33 19.80 42.39 4.41
693 948 2.652941 TAAAGGCACGTACGGGTAAG 57.347 50.000 20.35 4.57 0.00 2.34
844 1150 1.691434 AGAGCATGTCTAGGCTTAGGC 59.309 52.381 0.00 0.00 45.21 3.93
845 1151 2.961741 TGAGAGCATGTCTAGGCTTAGG 59.038 50.000 2.65 0.00 45.21 2.69
846 1152 4.870123 ATGAGAGCATGTCTAGGCTTAG 57.130 45.455 0.00 0.00 45.21 2.18
847 1153 4.202295 CCAATGAGAGCATGTCTAGGCTTA 60.202 45.833 0.00 0.00 45.21 3.09
848 1154 3.433314 CCAATGAGAGCATGTCTAGGCTT 60.433 47.826 0.00 0.00 45.21 4.35
850 1156 2.492012 CCAATGAGAGCATGTCTAGGC 58.508 52.381 0.00 0.00 34.71 3.93
981 1297 2.391926 TGGTGACTACTGAGTTGGGA 57.608 50.000 0.00 0.00 35.45 4.37
1149 1465 0.939419 GCCAGTTGTTAACGACGGTT 59.061 50.000 24.92 8.77 40.20 4.44
1400 1880 4.332819 GGTTGGTAACTGTATCATGCACTC 59.667 45.833 0.00 0.00 37.61 3.51
1418 1941 6.368791 CCTATATCACGTTCACATATGGTTGG 59.631 42.308 7.80 0.00 0.00 3.77
1486 2010 3.157087 CAACAATAGCCCACTCACCTTT 58.843 45.455 0.00 0.00 0.00 3.11
1524 2048 3.365291 GACACCGGTCGCCATAGCA 62.365 63.158 2.59 0.00 39.83 3.49
1557 2081 0.737367 CGTCGCTCCTTTGCTCATGA 60.737 55.000 0.00 0.00 0.00 3.07
1684 2240 1.127951 GACGCGGACACAAACTAATGG 59.872 52.381 12.47 0.00 0.00 3.16
1810 2370 3.030291 CTCTAGATGTCTTGGTGCCTCT 58.970 50.000 0.00 0.00 0.00 3.69
1824 2385 4.892345 TGCTAACTGTGATGCTCTCTAGAT 59.108 41.667 0.00 0.00 0.00 1.98
1904 2465 2.515398 CCAGGGTCCAACAGTGCA 59.485 61.111 0.00 0.00 0.00 4.57
2009 2571 6.183359 GCATTGCGAAAGAATAAAGAAGTGTG 60.183 38.462 0.00 0.00 0.00 3.82
2165 2731 1.172812 AAGTGGTTCCCTTCGCTTGC 61.173 55.000 0.00 0.00 33.15 4.01
2310 2879 4.935205 TGATTGAGAAATACACACCGGAAG 59.065 41.667 9.46 1.96 0.00 3.46
2344 2913 3.495434 AGTCTACTAGATCCCGTCCTG 57.505 52.381 0.00 0.00 0.00 3.86
2349 2918 5.049954 CGAGAGAAAAGTCTACTAGATCCCG 60.050 48.000 0.00 0.00 32.80 5.14
2477 3055 1.236616 TGCATCCCAAGCAAGACACG 61.237 55.000 0.00 0.00 39.39 4.49
2571 3149 8.844244 CCTTGAGATTTCCTATCAGGTTAATTG 58.156 37.037 0.00 0.00 36.53 2.32
2618 3196 1.682684 GGAGGACGAGGAGCAGGAA 60.683 63.158 0.00 0.00 0.00 3.36
2656 3235 3.645687 CCTCCCTTTTGTCCAATTTTCCA 59.354 43.478 0.00 0.00 0.00 3.53
2664 3243 2.851045 GGCCCTCCCTTTTGTCCA 59.149 61.111 0.00 0.00 0.00 4.02
2690 3269 4.002982 TGAGCACACAATAAGCTTACTGG 58.997 43.478 18.38 10.10 39.02 4.00
2730 3309 4.595986 ACTCGCCCTTTTATTTACCACAT 58.404 39.130 0.00 0.00 0.00 3.21
2749 3328 5.797051 TGTTACCACCACAACCTTATACTC 58.203 41.667 0.00 0.00 0.00 2.59
2763 3342 4.394729 TGAAGGATGTCTTTGTTACCACC 58.605 43.478 0.00 0.00 35.50 4.61
2804 3383 6.491403 AGAACAAAGAGCTATTGTGTCCATTT 59.509 34.615 15.81 1.56 39.98 2.32
2807 3386 4.756642 CAGAACAAAGAGCTATTGTGTCCA 59.243 41.667 15.81 0.00 39.98 4.02
2812 3391 4.718961 ACCACAGAACAAAGAGCTATTGT 58.281 39.130 10.71 10.71 42.56 2.71
2815 3394 4.080863 CCCTACCACAGAACAAAGAGCTAT 60.081 45.833 0.00 0.00 0.00 2.97
2834 3413 7.996644 GTGTCCAAAATTATTGTAGGATCCCTA 59.003 37.037 8.55 0.00 34.61 3.53
2866 3445 4.218852 CCTGATTCGATCCTAGAGGTAACC 59.781 50.000 0.00 0.00 36.34 2.85
2892 3471 9.853177 CTTCCTTATTTGATCTAGGTTAACCAT 57.147 33.333 26.26 11.40 38.89 3.55
2911 3490 6.430000 GCACAAATTACTGTCCTTCTTCCTTA 59.570 38.462 0.00 0.00 0.00 2.69
2916 3495 4.022849 GCAGCACAAATTACTGTCCTTCTT 60.023 41.667 0.00 0.00 33.87 2.52
2917 3496 3.503748 GCAGCACAAATTACTGTCCTTCT 59.496 43.478 0.00 0.00 33.87 2.85
2918 3497 3.503748 AGCAGCACAAATTACTGTCCTTC 59.496 43.478 0.00 0.00 33.87 3.46
2945 3524 9.769093 GAAATAAAAGATTTAAGAAGCTACGCA 57.231 29.630 0.00 0.00 29.85 5.24
2971 3551 4.724279 AGGGGCTTGGGTATATAAAGTG 57.276 45.455 0.00 0.00 0.00 3.16
2982 3562 0.995024 CCCAGATATAGGGGCTTGGG 59.005 60.000 5.02 0.00 42.90 4.12
2989 3569 4.952335 GCAAATTCATCCCCAGATATAGGG 59.048 45.833 5.84 5.84 46.36 3.53
2990 3570 5.824421 AGCAAATTCATCCCCAGATATAGG 58.176 41.667 0.00 0.00 0.00 2.57
2991 3571 7.173722 AGAAGCAAATTCATCCCCAGATATAG 58.826 38.462 0.00 0.00 40.67 1.31
2992 3572 7.095183 AGAAGCAAATTCATCCCCAGATATA 57.905 36.000 0.00 0.00 40.67 0.86
2993 3573 5.961897 AGAAGCAAATTCATCCCCAGATAT 58.038 37.500 0.00 0.00 40.67 1.63
2994 3574 5.393068 AGAAGCAAATTCATCCCCAGATA 57.607 39.130 0.00 0.00 40.67 1.98
2995 3575 4.261411 AGAAGCAAATTCATCCCCAGAT 57.739 40.909 0.00 0.00 40.67 2.90
2996 3576 3.744940 AGAAGCAAATTCATCCCCAGA 57.255 42.857 0.00 0.00 40.67 3.86
2997 3577 3.313526 CGTAGAAGCAAATTCATCCCCAG 59.686 47.826 0.00 0.00 40.67 4.45
2998 3578 3.278574 CGTAGAAGCAAATTCATCCCCA 58.721 45.455 0.00 0.00 40.67 4.96
2999 3579 3.279434 ACGTAGAAGCAAATTCATCCCC 58.721 45.455 0.00 0.00 40.67 4.81
3000 3580 4.192317 AGACGTAGAAGCAAATTCATCCC 58.808 43.478 0.00 0.00 40.67 3.85
3001 3581 4.026475 CGAGACGTAGAAGCAAATTCATCC 60.026 45.833 0.00 0.00 40.67 3.51
3002 3582 4.549107 GCGAGACGTAGAAGCAAATTCATC 60.549 45.833 0.00 0.00 40.67 2.92
3003 3583 3.307242 GCGAGACGTAGAAGCAAATTCAT 59.693 43.478 0.00 0.00 40.67 2.57
3004 3584 2.666508 GCGAGACGTAGAAGCAAATTCA 59.333 45.455 0.00 0.00 40.67 2.57
3005 3585 2.029365 GGCGAGACGTAGAAGCAAATTC 59.971 50.000 0.00 0.00 38.28 2.17
3006 3586 2.000447 GGCGAGACGTAGAAGCAAATT 59.000 47.619 0.00 0.00 0.00 1.82
3007 3587 1.067142 TGGCGAGACGTAGAAGCAAAT 60.067 47.619 0.00 0.00 0.00 2.32
3008 3588 0.315886 TGGCGAGACGTAGAAGCAAA 59.684 50.000 0.00 0.00 0.00 3.68
3009 3589 0.388134 GTGGCGAGACGTAGAAGCAA 60.388 55.000 0.00 0.00 0.00 3.91
3010 3590 1.211969 GTGGCGAGACGTAGAAGCA 59.788 57.895 0.00 0.00 0.00 3.91
3011 3591 0.109226 AAGTGGCGAGACGTAGAAGC 60.109 55.000 0.00 0.00 0.00 3.86
3012 3592 1.618861 CAAGTGGCGAGACGTAGAAG 58.381 55.000 0.00 0.00 0.00 2.85
3013 3593 0.242825 CCAAGTGGCGAGACGTAGAA 59.757 55.000 0.00 0.00 0.00 2.10
3014 3594 0.892358 ACCAAGTGGCGAGACGTAGA 60.892 55.000 0.00 0.00 39.32 2.59
3015 3595 0.038526 AACCAAGTGGCGAGACGTAG 60.039 55.000 0.00 0.00 39.32 3.51
3016 3596 0.319211 CAACCAAGTGGCGAGACGTA 60.319 55.000 0.00 0.00 39.32 3.57
3017 3597 1.594293 CAACCAAGTGGCGAGACGT 60.594 57.895 0.00 0.00 39.32 4.34
3018 3598 0.878523 TTCAACCAAGTGGCGAGACG 60.879 55.000 0.00 0.00 39.32 4.18
3019 3599 1.305201 TTTCAACCAAGTGGCGAGAC 58.695 50.000 0.00 0.00 39.32 3.36
3020 3600 2.045561 TTTTCAACCAAGTGGCGAGA 57.954 45.000 0.00 0.00 39.32 4.04
3021 3601 2.293122 TCATTTTCAACCAAGTGGCGAG 59.707 45.455 0.00 0.00 39.32 5.03
3022 3602 2.034053 GTCATTTTCAACCAAGTGGCGA 59.966 45.455 0.00 0.00 39.32 5.54
3023 3603 2.393764 GTCATTTTCAACCAAGTGGCG 58.606 47.619 0.00 0.00 39.32 5.69
3024 3604 2.547855 GGGTCATTTTCAACCAAGTGGC 60.548 50.000 0.00 0.00 39.32 5.01
3025 3605 2.965147 AGGGTCATTTTCAACCAAGTGG 59.035 45.455 0.00 0.00 37.28 4.00
3026 3606 3.384467 ACAGGGTCATTTTCAACCAAGTG 59.616 43.478 0.00 0.00 37.28 3.16
3027 3607 3.384467 CACAGGGTCATTTTCAACCAAGT 59.616 43.478 0.00 0.00 37.28 3.16
3028 3608 3.243839 CCACAGGGTCATTTTCAACCAAG 60.244 47.826 0.00 0.00 37.28 3.61
3029 3609 2.697751 CCACAGGGTCATTTTCAACCAA 59.302 45.455 0.00 0.00 37.28 3.67
3030 3610 2.315176 CCACAGGGTCATTTTCAACCA 58.685 47.619 0.00 0.00 37.28 3.67
3042 3622 0.109153 GAACCGGTTTACCACAGGGT 59.891 55.000 23.22 0.00 44.71 4.34
3043 3623 0.952010 CGAACCGGTTTACCACAGGG 60.952 60.000 23.22 0.00 44.78 4.45
3044 3624 0.249996 ACGAACCGGTTTACCACAGG 60.250 55.000 23.22 6.21 45.91 4.00
3045 3625 0.863144 CACGAACCGGTTTACCACAG 59.137 55.000 23.22 9.48 35.14 3.66
3046 3626 0.532417 CCACGAACCGGTTTACCACA 60.532 55.000 23.22 0.00 35.14 4.17
3047 3627 1.844771 GCCACGAACCGGTTTACCAC 61.845 60.000 23.22 7.12 35.14 4.16
3048 3628 1.597578 GCCACGAACCGGTTTACCA 60.598 57.895 23.22 0.00 35.14 3.25
3049 3629 1.597578 TGCCACGAACCGGTTTACC 60.598 57.895 23.22 7.95 0.00 2.85
3050 3630 1.570967 GTGCCACGAACCGGTTTAC 59.429 57.895 23.22 8.76 0.00 2.01
3051 3631 1.955157 CGTGCCACGAACCGGTTTA 60.955 57.895 23.22 1.34 46.05 2.01
3052 3632 3.273834 CGTGCCACGAACCGGTTT 61.274 61.111 23.22 2.84 46.05 3.27
3053 3633 4.534141 ACGTGCCACGAACCGGTT 62.534 61.111 25.94 22.50 46.05 4.44
3055 3635 3.844858 TACACGTGCCACGAACCGG 62.845 63.158 25.94 0.00 46.05 5.28
3056 3636 1.286354 AATACACGTGCCACGAACCG 61.286 55.000 25.94 11.31 46.05 4.44
3057 3637 1.712401 TAATACACGTGCCACGAACC 58.288 50.000 25.94 0.00 46.05 3.62
3058 3638 3.791993 TTTAATACACGTGCCACGAAC 57.208 42.857 25.94 0.00 46.05 3.95
3059 3639 4.378563 CCAATTTAATACACGTGCCACGAA 60.379 41.667 25.94 9.18 46.05 3.85
3060 3640 3.125487 CCAATTTAATACACGTGCCACGA 59.875 43.478 25.94 1.03 46.05 4.35
3062 3642 3.440872 TCCCAATTTAATACACGTGCCAC 59.559 43.478 17.22 0.00 0.00 5.01
3063 3643 3.687125 TCCCAATTTAATACACGTGCCA 58.313 40.909 17.22 3.83 0.00 4.92
3064 3644 4.911514 ATCCCAATTTAATACACGTGCC 57.088 40.909 17.22 0.00 0.00 5.01
3065 3645 7.075741 GTCATATCCCAATTTAATACACGTGC 58.924 38.462 17.22 0.00 0.00 5.34
3066 3646 7.570507 CGGTCATATCCCAATTTAATACACGTG 60.571 40.741 15.48 15.48 0.00 4.49
3067 3647 6.425721 CGGTCATATCCCAATTTAATACACGT 59.574 38.462 0.00 0.00 0.00 4.49
3068 3648 6.619874 GCGGTCATATCCCAATTTAATACACG 60.620 42.308 0.00 0.00 0.00 4.49
3069 3649 6.608610 GCGGTCATATCCCAATTTAATACAC 58.391 40.000 0.00 0.00 0.00 2.90
3070 3650 5.410132 CGCGGTCATATCCCAATTTAATACA 59.590 40.000 0.00 0.00 0.00 2.29
3071 3651 5.410439 ACGCGGTCATATCCCAATTTAATAC 59.590 40.000 12.47 0.00 0.00 1.89
3072 3652 5.553123 ACGCGGTCATATCCCAATTTAATA 58.447 37.500 12.47 0.00 0.00 0.98
3073 3653 4.394729 ACGCGGTCATATCCCAATTTAAT 58.605 39.130 12.47 0.00 0.00 1.40
3074 3654 3.811083 ACGCGGTCATATCCCAATTTAA 58.189 40.909 12.47 0.00 0.00 1.52
3075 3655 3.478857 ACGCGGTCATATCCCAATTTA 57.521 42.857 12.47 0.00 0.00 1.40
3076 3656 2.341846 ACGCGGTCATATCCCAATTT 57.658 45.000 12.47 0.00 0.00 1.82
3077 3657 2.103432 TGTACGCGGTCATATCCCAATT 59.897 45.455 12.47 0.00 0.00 2.32
3078 3658 1.689813 TGTACGCGGTCATATCCCAAT 59.310 47.619 12.47 0.00 0.00 3.16
3079 3659 1.112950 TGTACGCGGTCATATCCCAA 58.887 50.000 12.47 0.00 0.00 4.12
3080 3660 1.334160 ATGTACGCGGTCATATCCCA 58.666 50.000 12.47 0.00 0.00 4.37
3081 3661 2.334838 GAATGTACGCGGTCATATCCC 58.665 52.381 12.47 2.13 0.00 3.85
3082 3662 2.334838 GGAATGTACGCGGTCATATCC 58.665 52.381 12.47 17.36 0.00 2.59
3083 3663 2.334838 GGGAATGTACGCGGTCATATC 58.665 52.381 12.47 13.18 0.00 1.63
3084 3664 1.336517 CGGGAATGTACGCGGTCATAT 60.337 52.381 12.47 5.74 41.29 1.78
3085 3665 0.031043 CGGGAATGTACGCGGTCATA 59.969 55.000 12.47 0.00 41.29 2.15
3086 3666 1.227147 CGGGAATGTACGCGGTCAT 60.227 57.895 12.47 11.82 41.29 3.06
3087 3667 2.182284 CGGGAATGTACGCGGTCA 59.818 61.111 12.47 9.72 41.29 4.02
3092 3672 1.079681 TCACCACGGGAATGTACGC 60.080 57.895 0.00 0.00 0.00 4.42
3093 3673 0.245539 AGTCACCACGGGAATGTACG 59.754 55.000 0.00 0.00 0.00 3.67
3094 3674 1.549170 AGAGTCACCACGGGAATGTAC 59.451 52.381 0.00 0.00 0.00 2.90
3095 3675 1.933021 AGAGTCACCACGGGAATGTA 58.067 50.000 0.00 0.00 0.00 2.29
3096 3676 1.933021 TAGAGTCACCACGGGAATGT 58.067 50.000 0.00 0.00 0.00 2.71
3097 3677 2.233922 ACTTAGAGTCACCACGGGAATG 59.766 50.000 0.00 0.00 0.00 2.67
3098 3678 2.537143 ACTTAGAGTCACCACGGGAAT 58.463 47.619 0.00 0.00 0.00 3.01
3099 3679 2.005370 ACTTAGAGTCACCACGGGAA 57.995 50.000 0.00 0.00 0.00 3.97
3100 3680 2.005370 AACTTAGAGTCACCACGGGA 57.995 50.000 0.00 0.00 0.00 5.14
3101 3681 2.224209 ACAAACTTAGAGTCACCACGGG 60.224 50.000 0.00 0.00 0.00 5.28
3102 3682 2.800544 CACAAACTTAGAGTCACCACGG 59.199 50.000 0.00 0.00 0.00 4.94
3103 3683 3.454375 ACACAAACTTAGAGTCACCACG 58.546 45.455 0.00 0.00 0.00 4.94
3104 3684 4.873827 TGAACACAAACTTAGAGTCACCAC 59.126 41.667 0.00 0.00 0.00 4.16
3105 3685 5.092554 TGAACACAAACTTAGAGTCACCA 57.907 39.130 0.00 0.00 0.00 4.17
3106 3686 6.431198 TTTGAACACAAACTTAGAGTCACC 57.569 37.500 0.00 0.00 0.00 4.02
3107 3687 8.911247 AATTTTGAACACAAACTTAGAGTCAC 57.089 30.769 0.00 0.00 33.98 3.67
3108 3688 9.921637 AAAATTTTGAACACAAACTTAGAGTCA 57.078 25.926 1.75 0.00 33.98 3.41
3123 3703 4.264380 ACGCACGTTCAGAAAATTTTGAAC 59.736 37.500 19.29 19.29 46.01 3.18
3124 3704 4.416620 ACGCACGTTCAGAAAATTTTGAA 58.583 34.783 8.47 4.66 0.00 2.69
3125 3705 4.022464 ACGCACGTTCAGAAAATTTTGA 57.978 36.364 8.47 0.00 0.00 2.69
3126 3706 5.851177 AGATACGCACGTTCAGAAAATTTTG 59.149 36.000 8.47 0.00 0.00 2.44
3127 3707 5.997385 AGATACGCACGTTCAGAAAATTTT 58.003 33.333 2.28 2.28 0.00 1.82
3128 3708 5.607119 AGATACGCACGTTCAGAAAATTT 57.393 34.783 0.00 0.00 0.00 1.82
3129 3709 5.867716 AGTAGATACGCACGTTCAGAAAATT 59.132 36.000 0.00 0.00 0.00 1.82
3130 3710 5.408356 AGTAGATACGCACGTTCAGAAAAT 58.592 37.500 0.00 0.00 0.00 1.82
3131 3711 4.801891 AGTAGATACGCACGTTCAGAAAA 58.198 39.130 0.00 0.00 0.00 2.29
3132 3712 4.430137 AGTAGATACGCACGTTCAGAAA 57.570 40.909 0.00 0.00 0.00 2.52
3133 3713 4.083164 TCAAGTAGATACGCACGTTCAGAA 60.083 41.667 0.00 0.00 0.00 3.02
3134 3714 3.437741 TCAAGTAGATACGCACGTTCAGA 59.562 43.478 0.00 0.00 0.00 3.27
3135 3715 3.754955 TCAAGTAGATACGCACGTTCAG 58.245 45.455 0.00 0.00 0.00 3.02
3136 3716 3.835378 TCAAGTAGATACGCACGTTCA 57.165 42.857 0.00 0.00 0.00 3.18
3137 3717 4.026804 CCAATCAAGTAGATACGCACGTTC 60.027 45.833 0.00 0.00 35.39 3.95
3138 3718 3.863424 CCAATCAAGTAGATACGCACGTT 59.137 43.478 0.00 0.00 35.39 3.99
3139 3719 3.119245 ACCAATCAAGTAGATACGCACGT 60.119 43.478 0.00 0.00 35.39 4.49
3140 3720 3.444916 ACCAATCAAGTAGATACGCACG 58.555 45.455 0.00 0.00 35.39 5.34
3141 3721 4.026804 CGAACCAATCAAGTAGATACGCAC 60.027 45.833 0.00 0.00 35.39 5.34
3142 3722 4.109766 CGAACCAATCAAGTAGATACGCA 58.890 43.478 0.00 0.00 35.39 5.24
3143 3723 4.110482 ACGAACCAATCAAGTAGATACGC 58.890 43.478 0.00 0.00 35.39 4.42
3144 3724 5.579718 AGACGAACCAATCAAGTAGATACG 58.420 41.667 0.00 0.00 35.39 3.06
3145 3725 6.637658 GCTAGACGAACCAATCAAGTAGATAC 59.362 42.308 0.00 0.00 35.39 2.24
3146 3726 6.736123 GCTAGACGAACCAATCAAGTAGATA 58.264 40.000 0.00 0.00 35.39 1.98
3147 3727 5.593010 GCTAGACGAACCAATCAAGTAGAT 58.407 41.667 0.00 0.00 39.09 1.98
3148 3728 4.995124 GCTAGACGAACCAATCAAGTAGA 58.005 43.478 0.00 0.00 0.00 2.59
3164 3744 3.308866 ACACAACACAGAAAACGCTAGAC 59.691 43.478 0.00 0.00 0.00 2.59
3165 3745 3.308595 CACACAACACAGAAAACGCTAGA 59.691 43.478 0.00 0.00 0.00 2.43
3166 3746 3.546020 CCACACAACACAGAAAACGCTAG 60.546 47.826 0.00 0.00 0.00 3.42
3167 3747 2.353269 CCACACAACACAGAAAACGCTA 59.647 45.455 0.00 0.00 0.00 4.26
3168 3748 1.132262 CCACACAACACAGAAAACGCT 59.868 47.619 0.00 0.00 0.00 5.07
3169 3749 1.544686 CCACACAACACAGAAAACGC 58.455 50.000 0.00 0.00 0.00 4.84
3170 3750 1.797348 GCCCACACAACACAGAAAACG 60.797 52.381 0.00 0.00 0.00 3.60
3171 3751 1.470805 GGCCCACACAACACAGAAAAC 60.471 52.381 0.00 0.00 0.00 2.43
3172 3752 0.820871 GGCCCACACAACACAGAAAA 59.179 50.000 0.00 0.00 0.00 2.29
3173 3753 0.323816 TGGCCCACACAACACAGAAA 60.324 50.000 0.00 0.00 0.00 2.52
3174 3754 0.106268 ATGGCCCACACAACACAGAA 60.106 50.000 0.00 0.00 0.00 3.02
3175 3755 0.822944 CATGGCCCACACAACACAGA 60.823 55.000 0.00 0.00 0.00 3.41
3176 3756 1.661480 CATGGCCCACACAACACAG 59.339 57.895 0.00 0.00 0.00 3.66
3177 3757 1.831726 CCATGGCCCACACAACACA 60.832 57.895 0.00 0.00 0.00 3.72
3178 3758 1.398958 AACCATGGCCCACACAACAC 61.399 55.000 13.04 0.00 0.00 3.32
3179 3759 1.075674 AACCATGGCCCACACAACA 60.076 52.632 13.04 0.00 0.00 3.33
3180 3760 1.112315 TCAACCATGGCCCACACAAC 61.112 55.000 13.04 0.00 0.00 3.32
3181 3761 0.397675 TTCAACCATGGCCCACACAA 60.398 50.000 13.04 0.00 0.00 3.33
3182 3762 0.178938 ATTCAACCATGGCCCACACA 60.179 50.000 13.04 0.00 0.00 3.72
3183 3763 0.975887 AATTCAACCATGGCCCACAC 59.024 50.000 13.04 0.00 0.00 3.82
3184 3764 1.265236 GAATTCAACCATGGCCCACA 58.735 50.000 13.04 0.00 0.00 4.17
3185 3765 0.173255 CGAATTCAACCATGGCCCAC 59.827 55.000 13.04 0.00 0.00 4.61
3186 3766 1.603236 GCGAATTCAACCATGGCCCA 61.603 55.000 13.04 0.00 0.00 5.36
3187 3767 1.141665 GCGAATTCAACCATGGCCC 59.858 57.895 13.04 0.00 0.00 5.80
3188 3768 1.226660 CGCGAATTCAACCATGGCC 60.227 57.895 13.04 0.00 0.00 5.36
3189 3769 1.226660 CCGCGAATTCAACCATGGC 60.227 57.895 13.04 0.00 0.00 4.40
3190 3770 0.098728 GACCGCGAATTCAACCATGG 59.901 55.000 11.19 11.19 0.00 3.66
3191 3771 1.086696 AGACCGCGAATTCAACCATG 58.913 50.000 8.23 0.00 0.00 3.66
3192 3772 1.086696 CAGACCGCGAATTCAACCAT 58.913 50.000 8.23 0.00 0.00 3.55
3193 3773 1.573829 GCAGACCGCGAATTCAACCA 61.574 55.000 8.23 0.00 0.00 3.67
3194 3774 1.134694 GCAGACCGCGAATTCAACC 59.865 57.895 8.23 0.00 0.00 3.77
3195 3775 0.179215 CTGCAGACCGCGAATTCAAC 60.179 55.000 8.42 0.00 46.97 3.18
3196 3776 1.911293 GCTGCAGACCGCGAATTCAA 61.911 55.000 20.43 0.00 46.97 2.69
3197 3777 2.390599 GCTGCAGACCGCGAATTCA 61.391 57.895 20.43 0.00 46.97 2.57
3198 3778 1.709147 ATGCTGCAGACCGCGAATTC 61.709 55.000 20.43 0.00 46.97 2.17
3199 3779 0.461870 TATGCTGCAGACCGCGAATT 60.462 50.000 20.43 0.00 46.97 2.17
3200 3780 0.250038 ATATGCTGCAGACCGCGAAT 60.250 50.000 20.43 0.00 46.97 3.34
3201 3781 0.875908 GATATGCTGCAGACCGCGAA 60.876 55.000 20.43 0.00 46.97 4.70
3202 3782 1.300156 GATATGCTGCAGACCGCGA 60.300 57.895 20.43 0.00 46.97 5.87
3203 3783 1.280886 GAGATATGCTGCAGACCGCG 61.281 60.000 20.43 0.00 46.97 6.46
3204 3784 1.280886 CGAGATATGCTGCAGACCGC 61.281 60.000 20.43 2.64 42.89 5.68
3205 3785 0.665670 CCGAGATATGCTGCAGACCG 60.666 60.000 20.43 8.35 0.00 4.79
3206 3786 0.676184 TCCGAGATATGCTGCAGACC 59.324 55.000 20.43 0.12 0.00 3.85
3207 3787 1.067669 TGTCCGAGATATGCTGCAGAC 59.932 52.381 20.43 9.67 0.00 3.51
3208 3788 1.402787 TGTCCGAGATATGCTGCAGA 58.597 50.000 20.43 3.27 0.00 4.26
3209 3789 2.452295 ATGTCCGAGATATGCTGCAG 57.548 50.000 10.11 10.11 0.00 4.41
3210 3790 2.548707 GGAATGTCCGAGATATGCTGCA 60.549 50.000 4.13 4.13 0.00 4.41
3211 3791 2.072298 GGAATGTCCGAGATATGCTGC 58.928 52.381 0.00 0.00 0.00 5.25
3212 3792 3.674528 AGGAATGTCCGAGATATGCTG 57.325 47.619 0.00 0.00 42.75 4.41
3213 3793 4.696479 AAAGGAATGTCCGAGATATGCT 57.304 40.909 0.00 0.00 42.75 3.79
3214 3794 4.576463 ACAAAAGGAATGTCCGAGATATGC 59.424 41.667 0.00 0.00 42.75 3.14
3215 3795 5.817296 TGACAAAAGGAATGTCCGAGATATG 59.183 40.000 4.40 0.00 45.19 1.78
3216 3796 5.989477 TGACAAAAGGAATGTCCGAGATAT 58.011 37.500 4.40 0.00 45.19 1.63
3217 3797 5.414789 TGACAAAAGGAATGTCCGAGATA 57.585 39.130 4.40 0.00 45.19 1.98
3218 3798 4.286297 TGACAAAAGGAATGTCCGAGAT 57.714 40.909 4.40 0.00 45.19 2.75
3219 3799 3.762407 TGACAAAAGGAATGTCCGAGA 57.238 42.857 4.40 0.00 45.19 4.04
3220 3800 5.586243 ACATATGACAAAAGGAATGTCCGAG 59.414 40.000 10.38 0.00 45.19 4.63
3221 3801 5.496556 ACATATGACAAAAGGAATGTCCGA 58.503 37.500 10.38 0.00 45.19 4.55
3222 3802 5.353956 TGACATATGACAAAAGGAATGTCCG 59.646 40.000 10.38 0.00 45.19 4.79
3223 3803 6.375455 ACTGACATATGACAAAAGGAATGTCC 59.625 38.462 10.38 0.00 45.19 4.02
3224 3804 7.383102 ACTGACATATGACAAAAGGAATGTC 57.617 36.000 10.38 6.36 45.82 3.06
3225 3805 7.231317 ACAACTGACATATGACAAAAGGAATGT 59.769 33.333 10.38 6.23 0.00 2.71
3226 3806 7.539710 CACAACTGACATATGACAAAAGGAATG 59.460 37.037 10.38 5.70 0.00 2.67
3227 3807 7.596494 CACAACTGACATATGACAAAAGGAAT 58.404 34.615 10.38 0.00 0.00 3.01
3228 3808 6.514870 GCACAACTGACATATGACAAAAGGAA 60.515 38.462 10.38 0.00 0.00 3.36
3229 3809 5.048782 GCACAACTGACATATGACAAAAGGA 60.049 40.000 10.38 0.00 0.00 3.36
3230 3810 5.156355 GCACAACTGACATATGACAAAAGG 58.844 41.667 10.38 0.23 0.00 3.11
3231 3811 5.761003 TGCACAACTGACATATGACAAAAG 58.239 37.500 10.38 4.54 0.00 2.27
3232 3812 5.764487 TGCACAACTGACATATGACAAAA 57.236 34.783 10.38 0.00 0.00 2.44
3233 3813 5.701855 CATGCACAACTGACATATGACAAA 58.298 37.500 10.38 0.00 0.00 2.83
3234 3814 4.379708 GCATGCACAACTGACATATGACAA 60.380 41.667 14.21 0.00 0.00 3.18
3235 3815 3.127376 GCATGCACAACTGACATATGACA 59.873 43.478 14.21 8.83 0.00 3.58
3236 3816 3.688272 GCATGCACAACTGACATATGAC 58.312 45.455 14.21 3.62 0.00 3.06
3237 3817 2.352342 CGCATGCACAACTGACATATGA 59.648 45.455 19.57 0.00 0.00 2.15
3238 3818 2.096335 ACGCATGCACAACTGACATATG 59.904 45.455 19.57 0.00 0.00 1.78
3239 3819 2.358957 ACGCATGCACAACTGACATAT 58.641 42.857 19.57 0.00 0.00 1.78
3240 3820 1.807139 ACGCATGCACAACTGACATA 58.193 45.000 19.57 0.00 0.00 2.29
3241 3821 0.953727 AACGCATGCACAACTGACAT 59.046 45.000 19.57 0.00 0.00 3.06
3242 3822 0.737804 AAACGCATGCACAACTGACA 59.262 45.000 19.57 0.00 0.00 3.58
3243 3823 1.122849 CAAACGCATGCACAACTGAC 58.877 50.000 19.57 0.00 0.00 3.51
3244 3824 1.020437 TCAAACGCATGCACAACTGA 58.980 45.000 19.57 9.44 0.00 3.41
3245 3825 2.054687 ATCAAACGCATGCACAACTG 57.945 45.000 19.57 7.17 0.00 3.16
3246 3826 2.796031 CAAATCAAACGCATGCACAACT 59.204 40.909 19.57 0.00 0.00 3.16
3247 3827 2.793790 TCAAATCAAACGCATGCACAAC 59.206 40.909 19.57 0.00 0.00 3.32
3248 3828 3.089573 TCAAATCAAACGCATGCACAA 57.910 38.095 19.57 0.00 0.00 3.33
3249 3829 2.789491 TCAAATCAAACGCATGCACA 57.211 40.000 19.57 0.00 0.00 4.57
3250 3830 3.059834 GTGATCAAATCAAACGCATGCAC 59.940 43.478 19.57 0.00 41.69 4.57
3251 3831 3.244156 GTGATCAAATCAAACGCATGCA 58.756 40.909 19.57 0.00 41.69 3.96
3252 3832 2.277057 CGTGATCAAATCAAACGCATGC 59.723 45.455 7.91 7.91 41.69 4.06
3253 3833 3.491356 ACGTGATCAAATCAAACGCATG 58.509 40.909 0.00 0.00 41.69 4.06
3254 3834 3.829886 ACGTGATCAAATCAAACGCAT 57.170 38.095 0.00 0.00 41.69 4.73
3255 3835 4.153296 ACATACGTGATCAAATCAAACGCA 59.847 37.500 0.00 0.00 41.69 5.24
3256 3836 4.647964 ACATACGTGATCAAATCAAACGC 58.352 39.130 0.00 0.00 41.69 4.84
3257 3837 7.015289 AGAAACATACGTGATCAAATCAAACG 58.985 34.615 0.00 0.00 41.69 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.