Multiple sequence alignment - TraesCS2D01G083100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G083100 chr2D 100.000 5487 0 0 1 5487 35919490 35924976 0.000000e+00 10133
1 TraesCS2D01G083100 chr2A 96.804 1846 54 4 3270 5111 39414627 39412783 0.000000e+00 3077
2 TraesCS2D01G083100 chr2A 91.763 1736 109 13 3379 5111 39306975 39308679 0.000000e+00 2383
3 TraesCS2D01G083100 chr2A 94.928 1459 41 10 1078 2514 39291421 39292868 0.000000e+00 2254
4 TraesCS2D01G083100 chr2A 90.520 865 80 2 4 867 39289880 39290743 0.000000e+00 1142
5 TraesCS2D01G083100 chr2A 95.663 392 16 1 3000 3391 39293146 39293536 3.610000e-176 628
6 TraesCS2D01G083100 chr2A 82.520 246 16 5 5125 5370 39308788 39309006 2.020000e-44 191
7 TraesCS2D01G083100 chr2A 93.496 123 6 1 5291 5413 39412529 39412409 1.210000e-41 182
8 TraesCS2D01G083100 chr2A 97.872 94 2 0 2506 2599 39293056 39293149 4.400000e-36 163
9 TraesCS2D01G083100 chr2B 90.173 1333 122 8 3687 5018 61300912 61299588 0.000000e+00 1727
10 TraesCS2D01G083100 chr2B 89.483 1141 98 9 3641 4780 61495048 61493929 0.000000e+00 1423
11 TraesCS2D01G083100 chr2B 96.955 624 18 1 4823 5446 61493394 61492772 0.000000e+00 1046
12 TraesCS2D01G083100 chr2B 92.254 142 9 2 5111 5252 61299573 61299434 3.350000e-47 200
13 TraesCS2D01G083100 chr2B 93.388 121 7 1 5294 5413 61299442 61299322 1.570000e-40 178
14 TraesCS2D01G083100 chr7A 85.473 1005 87 21 1941 2896 194794812 194795806 0.000000e+00 992
15 TraesCS2D01G083100 chr7A 88.446 251 24 3 1528 1777 194793997 194794243 1.160000e-76 298
16 TraesCS2D01G083100 chr7A 90.270 185 10 3 1773 1951 194794528 194794710 9.190000e-58 235
17 TraesCS2D01G083100 chr7B 86.207 899 75 22 1941 2801 333959987 333959100 0.000000e+00 928
18 TraesCS2D01G083100 chr7B 91.351 185 8 3 1773 1951 333960279 333960097 4.250000e-61 246
19 TraesCS2D01G083100 chr7B 89.720 107 11 0 1674 1780 333960692 333960586 2.670000e-28 137
20 TraesCS2D01G083100 chr7D 83.414 826 67 20 2126 2896 189247292 189246482 0.000000e+00 702
21 TraesCS2D01G083100 chr7D 88.144 194 21 2 1946 2139 189247512 189247321 4.280000e-56 230
22 TraesCS2D01G083100 chr7D 89.189 185 12 3 1773 1951 189247792 189247610 1.990000e-54 224
23 TraesCS2D01G083100 chr6B 77.570 321 44 13 2352 2661 123488130 123487827 9.450000e-38 169
24 TraesCS2D01G083100 chr6B 75.661 378 57 20 2230 2588 123490474 123490113 7.360000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G083100 chr2D 35919490 35924976 5486 False 10133.000000 10133 100.000000 1 5487 1 chr2D.!!$F1 5486
1 TraesCS2D01G083100 chr2A 39412409 39414627 2218 True 1629.500000 3077 95.150000 3270 5413 2 chr2A.!!$R1 2143
2 TraesCS2D01G083100 chr2A 39306975 39309006 2031 False 1287.000000 2383 87.141500 3379 5370 2 chr2A.!!$F2 1991
3 TraesCS2D01G083100 chr2A 39289880 39293536 3656 False 1046.750000 2254 94.745750 4 3391 4 chr2A.!!$F1 3387
4 TraesCS2D01G083100 chr2B 61492772 61495048 2276 True 1234.500000 1423 93.219000 3641 5446 2 chr2B.!!$R2 1805
5 TraesCS2D01G083100 chr2B 61299322 61300912 1590 True 701.666667 1727 91.938333 3687 5413 3 chr2B.!!$R1 1726
6 TraesCS2D01G083100 chr7A 194793997 194795806 1809 False 508.333333 992 88.063000 1528 2896 3 chr7A.!!$F1 1368
7 TraesCS2D01G083100 chr7B 333959100 333960692 1592 True 437.000000 928 89.092667 1674 2801 3 chr7B.!!$R1 1127
8 TraesCS2D01G083100 chr7D 189246482 189247792 1310 True 385.333333 702 86.915667 1773 2896 3 chr7D.!!$R1 1123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.032017 ACACCTACTAGCCCCTCCTG 60.032 60.0 0.00 0.00 0.00 3.86 F
969 971 0.032515 AATCCCCCAAATCGGAACCC 60.033 55.0 0.00 0.00 36.56 4.11 F
2902 4136 0.099968 CATCACTCCGGCAAATGCTG 59.900 55.0 7.25 7.25 46.63 4.41 F
2975 4209 0.038892 CAAACCATGTCAGCTGGCAC 60.039 55.0 25.88 11.20 37.27 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1198 1667 0.898789 TCTTGTGTCCCTCCTCCGTC 60.899 60.00 0.00 0.0 0.00 4.79 R
2956 4190 0.038892 GTGCCAGCTGACATGGTTTG 60.039 55.00 17.39 0.0 40.17 2.93 R
3725 4959 0.671781 GCTCCTTCTTCGCAGCTCAA 60.672 55.00 0.00 0.0 0.00 3.02 R
4755 6004 5.786401 AAGAATATCAAATCGCTATCCGC 57.214 39.13 0.00 0.0 36.73 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.974645 TCCACACACTCTAATTCAACCT 57.025 40.909 0.00 0.00 0.00 3.50
55 56 2.236395 ACACTCTAATTCAACCTCCCCG 59.764 50.000 0.00 0.00 0.00 5.73
59 60 1.486726 CTAATTCAACCTCCCCGCTCT 59.513 52.381 0.00 0.00 0.00 4.09
64 65 1.985116 AACCTCCCCGCTCTCTCAC 60.985 63.158 0.00 0.00 0.00 3.51
78 79 0.593618 TCTCACTCGCTCTCACACAC 59.406 55.000 0.00 0.00 0.00 3.82
101 102 1.629043 TTTGTGCGTCTCCTACCTCT 58.371 50.000 0.00 0.00 0.00 3.69
111 112 4.706035 GTCTCCTACCTCTCTTATCGTCA 58.294 47.826 0.00 0.00 0.00 4.35
124 125 7.096551 TCTCTTATCGTCATTCACATTGACAA 58.903 34.615 4.86 0.00 42.90 3.18
151 152 4.496341 CGCTCACAACACCATGGATTAATC 60.496 45.833 21.47 6.93 0.00 1.75
167 168 7.064866 TGGATTAATCTTTCTCTTGCCATCAT 58.935 34.615 14.95 0.00 0.00 2.45
200 201 6.753913 TCCTCCTCTAAATATCATTGCACT 57.246 37.500 0.00 0.00 0.00 4.40
201 202 6.528321 TCCTCCTCTAAATATCATTGCACTG 58.472 40.000 0.00 0.00 0.00 3.66
220 221 2.959030 CTGCTATGGCTCACACCTACTA 59.041 50.000 1.68 0.00 39.59 1.82
230 231 0.032017 ACACCTACTAGCCCCTCCTG 60.032 60.000 0.00 0.00 0.00 3.86
233 234 1.075226 CTACTAGCCCCTCCTGCCA 60.075 63.158 0.00 0.00 0.00 4.92
256 257 2.507102 CGCTACAGGGCAGTGTCG 60.507 66.667 0.00 0.00 31.46 4.35
328 329 2.179517 CGATATCCTCCGGCGAGC 59.820 66.667 9.30 0.00 34.49 5.03
357 358 1.662044 CCACAAGGCTTCTGCAACC 59.338 57.895 0.00 0.00 41.91 3.77
423 424 0.724549 GTGTGTGTGCTGTGAACGAA 59.275 50.000 0.00 0.00 0.00 3.85
427 428 2.248431 GTGCTGTGAACGAACGCC 59.752 61.111 0.00 0.00 0.00 5.68
459 460 4.505217 GCGAGCATCCGTGTTGCG 62.505 66.667 0.00 0.00 44.82 4.85
469 470 1.497278 CGTGTTGCGATGTTGGGAG 59.503 57.895 0.00 0.00 44.77 4.30
535 536 1.973281 CCACGCACTTTGCTGGGAT 60.973 57.895 8.11 0.00 42.25 3.85
556 557 1.134788 GGTGATCACCCAACTCTACGG 60.135 57.143 31.37 0.00 45.68 4.02
559 560 1.956629 ATCACCCAACTCTACGGCCG 61.957 60.000 26.86 26.86 0.00 6.13
583 584 2.139118 GTGACCTGTGCAGAGTTTCTC 58.861 52.381 10.34 3.46 0.00 2.87
585 586 0.601311 ACCTGTGCAGAGTTTCTCGC 60.601 55.000 10.34 0.00 35.36 5.03
591 592 1.517832 CAGAGTTTCTCGCCGGGAT 59.482 57.895 2.18 0.00 35.36 3.85
597 598 0.828022 TTTCTCGCCGGGATATGTGT 59.172 50.000 2.18 0.00 0.00 3.72
598 599 0.387929 TTCTCGCCGGGATATGTGTC 59.612 55.000 2.18 0.00 0.00 3.67
602 603 1.440060 GCCGGGATATGTGTCGACA 59.560 57.895 15.76 15.76 36.22 4.35
603 604 0.597637 GCCGGGATATGTGTCGACAG 60.598 60.000 20.73 4.80 34.87 3.51
609 610 2.223829 GGATATGTGTCGACAGGGTGAG 60.224 54.545 20.73 0.00 34.87 3.51
610 611 1.919240 TATGTGTCGACAGGGTGAGT 58.081 50.000 20.73 2.70 34.87 3.41
611 612 0.318441 ATGTGTCGACAGGGTGAGTG 59.682 55.000 20.73 0.00 34.87 3.51
615 616 3.314331 CGACAGGGTGAGTGGCCT 61.314 66.667 3.32 0.00 0.00 5.19
616 617 2.348998 GACAGGGTGAGTGGCCTG 59.651 66.667 3.32 0.00 36.49 4.85
627 628 1.815421 GTGGCCTGCACTATGACCG 60.815 63.158 3.32 0.00 0.00 4.79
776 778 0.749454 AGCCGGACTGATCAAATGGC 60.749 55.000 5.05 16.18 41.27 4.40
809 811 2.434331 CAACGGCTTGGGAGGGAA 59.566 61.111 0.00 0.00 0.00 3.97
870 872 3.353836 GCGCAAACGGCTCTTCCA 61.354 61.111 0.30 0.00 41.67 3.53
871 873 2.863153 CGCAAACGGCTCTTCCAG 59.137 61.111 0.00 0.00 41.67 3.86
872 874 1.667830 CGCAAACGGCTCTTCCAGA 60.668 57.895 0.00 0.00 41.67 3.86
873 875 1.227999 CGCAAACGGCTCTTCCAGAA 61.228 55.000 0.00 0.00 41.67 3.02
874 876 0.519077 GCAAACGGCTCTTCCAGAAG 59.481 55.000 0.73 0.73 40.25 2.85
875 877 1.160137 CAAACGGCTCTTCCAGAAGG 58.840 55.000 7.53 0.44 38.88 3.46
876 878 0.606673 AAACGGCTCTTCCAGAAGGC 60.607 55.000 7.53 9.30 38.88 4.35
877 879 2.124942 CGGCTCTTCCAGAAGGCC 60.125 66.667 20.92 20.92 44.30 5.19
878 880 2.959484 CGGCTCTTCCAGAAGGCCA 61.959 63.158 25.96 4.61 46.17 5.36
879 881 1.377856 GGCTCTTCCAGAAGGCCAC 60.378 63.158 23.72 0.00 45.66 5.01
880 882 1.376466 GCTCTTCCAGAAGGCCACA 59.624 57.895 5.01 0.00 38.88 4.17
881 883 0.676151 GCTCTTCCAGAAGGCCACAG 60.676 60.000 5.01 0.00 38.88 3.66
882 884 0.676151 CTCTTCCAGAAGGCCACAGC 60.676 60.000 5.01 0.00 38.88 4.40
883 885 1.130054 TCTTCCAGAAGGCCACAGCT 61.130 55.000 5.01 0.00 38.88 4.24
884 886 0.251077 CTTCCAGAAGGCCACAGCTT 60.251 55.000 5.01 0.00 39.73 3.74
885 887 0.250901 TTCCAGAAGGCCACAGCTTC 60.251 55.000 5.01 0.00 39.73 3.86
886 888 2.037136 CCAGAAGGCCACAGCTTCG 61.037 63.158 5.01 0.00 39.73 3.79
887 889 1.004560 CAGAAGGCCACAGCTTCGA 60.005 57.895 5.01 0.00 39.73 3.71
888 890 0.603707 CAGAAGGCCACAGCTTCGAA 60.604 55.000 5.01 0.00 39.73 3.71
889 891 0.326264 AGAAGGCCACAGCTTCGAAT 59.674 50.000 5.01 0.00 39.73 3.34
890 892 0.729690 GAAGGCCACAGCTTCGAATC 59.270 55.000 5.01 0.00 39.73 2.52
891 893 1.021390 AAGGCCACAGCTTCGAATCG 61.021 55.000 5.01 0.00 39.73 3.34
892 894 2.464459 GGCCACAGCTTCGAATCGG 61.464 63.158 1.76 0.00 39.73 4.18
893 895 3.093278 CCACAGCTTCGAATCGGC 58.907 61.111 1.76 0.00 0.00 5.54
894 896 2.464459 CCACAGCTTCGAATCGGCC 61.464 63.158 1.76 0.00 0.00 6.13
895 897 2.125106 ACAGCTTCGAATCGGCCC 60.125 61.111 1.76 0.00 0.00 5.80
896 898 2.897350 CAGCTTCGAATCGGCCCC 60.897 66.667 1.76 0.00 0.00 5.80
897 899 4.176752 AGCTTCGAATCGGCCCCC 62.177 66.667 1.76 0.00 0.00 5.40
919 921 2.683475 CCCCCGCCTCCTCAAAAT 59.317 61.111 0.00 0.00 0.00 1.82
920 922 1.000359 CCCCCGCCTCCTCAAAATT 60.000 57.895 0.00 0.00 0.00 1.82
921 923 0.614697 CCCCCGCCTCCTCAAAATTT 60.615 55.000 0.00 0.00 0.00 1.82
922 924 0.817654 CCCCGCCTCCTCAAAATTTC 59.182 55.000 0.00 0.00 0.00 2.17
923 925 0.817654 CCCGCCTCCTCAAAATTTCC 59.182 55.000 0.00 0.00 0.00 3.13
924 926 0.817654 CCGCCTCCTCAAAATTTCCC 59.182 55.000 0.00 0.00 0.00 3.97
925 927 1.544724 CGCCTCCTCAAAATTTCCCA 58.455 50.000 0.00 0.00 0.00 4.37
926 928 1.202348 CGCCTCCTCAAAATTTCCCAC 59.798 52.381 0.00 0.00 0.00 4.61
927 929 1.550524 GCCTCCTCAAAATTTCCCACC 59.449 52.381 0.00 0.00 0.00 4.61
928 930 2.823152 GCCTCCTCAAAATTTCCCACCT 60.823 50.000 0.00 0.00 0.00 4.00
929 931 3.092301 CCTCCTCAAAATTTCCCACCTC 58.908 50.000 0.00 0.00 0.00 3.85
930 932 3.245407 CCTCCTCAAAATTTCCCACCTCT 60.245 47.826 0.00 0.00 0.00 3.69
931 933 4.013050 CTCCTCAAAATTTCCCACCTCTC 58.987 47.826 0.00 0.00 0.00 3.20
932 934 3.092301 CCTCAAAATTTCCCACCTCTCC 58.908 50.000 0.00 0.00 0.00 3.71
933 935 3.092301 CTCAAAATTTCCCACCTCTCCC 58.908 50.000 0.00 0.00 0.00 4.30
934 936 2.179427 CAAAATTTCCCACCTCTCCCC 58.821 52.381 0.00 0.00 0.00 4.81
935 937 0.710588 AAATTTCCCACCTCTCCCCC 59.289 55.000 0.00 0.00 0.00 5.40
950 952 3.662290 CCCCCGAATTCTTGGAACA 57.338 52.632 11.37 0.00 0.00 3.18
963 965 1.846007 TGGAACAATCCCCCAAATCG 58.154 50.000 0.00 0.00 45.95 3.34
964 966 1.111277 GGAACAATCCCCCAAATCGG 58.889 55.000 0.00 0.00 40.10 4.18
965 967 1.341581 GGAACAATCCCCCAAATCGGA 60.342 52.381 0.00 0.00 40.10 4.55
966 968 2.452505 GAACAATCCCCCAAATCGGAA 58.547 47.619 0.00 0.00 36.56 4.30
967 969 1.847328 ACAATCCCCCAAATCGGAAC 58.153 50.000 0.00 0.00 36.56 3.62
968 970 1.111277 CAATCCCCCAAATCGGAACC 58.889 55.000 0.00 0.00 36.56 3.62
969 971 0.032515 AATCCCCCAAATCGGAACCC 60.033 55.000 0.00 0.00 36.56 4.11
970 972 1.944896 ATCCCCCAAATCGGAACCCC 61.945 60.000 0.00 0.00 36.56 4.95
971 973 2.622447 CCCCCAAATCGGAACCCCT 61.622 63.158 0.00 0.00 36.56 4.79
972 974 1.076995 CCCCAAATCGGAACCCCTC 60.077 63.158 0.00 0.00 36.56 4.30
973 975 1.076995 CCCAAATCGGAACCCCTCC 60.077 63.158 0.00 0.00 41.40 4.30
974 976 1.076995 CCAAATCGGAACCCCTCCC 60.077 63.158 0.00 0.00 41.87 4.30
975 977 1.571773 CCAAATCGGAACCCCTCCCT 61.572 60.000 0.00 0.00 41.87 4.20
976 978 0.107165 CAAATCGGAACCCCTCCCTC 60.107 60.000 0.00 0.00 41.87 4.30
977 979 1.279749 AAATCGGAACCCCTCCCTCC 61.280 60.000 0.00 0.00 41.87 4.30
978 980 3.715848 ATCGGAACCCCTCCCTCCC 62.716 68.421 0.00 0.00 41.87 4.30
979 981 4.416601 CGGAACCCCTCCCTCCCT 62.417 72.222 0.00 0.00 41.87 4.20
980 982 2.127528 GGAACCCCTCCCTCCCTT 59.872 66.667 0.00 0.00 38.44 3.95
981 983 2.001838 GGAACCCCTCCCTCCCTTC 61.002 68.421 0.00 0.00 38.44 3.46
982 984 2.001838 GAACCCCTCCCTCCCTTCC 61.002 68.421 0.00 0.00 0.00 3.46
983 985 2.494151 GAACCCCTCCCTCCCTTCCT 62.494 65.000 0.00 0.00 0.00 3.36
984 986 2.040359 CCCCTCCCTCCCTTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
985 987 2.040359 CCCTCCCTCCCTTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
986 988 2.040359 CCTCCCTCCCTTCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
987 989 2.040359 CTCCCTCCCTTCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
988 990 3.707189 TCCCTCCCTTCCTCCCCC 61.707 72.222 0.00 0.00 0.00 5.40
1002 1004 4.873129 CCCCCGCTCGTCGTCATG 62.873 72.222 0.00 0.00 36.19 3.07
1008 1010 4.873129 CTCGTCGTCATGCCGGGG 62.873 72.222 2.18 0.00 0.00 5.73
1026 1028 3.160047 CTCCGCCTGCCTCCAGAT 61.160 66.667 0.00 0.00 41.77 2.90
1027 1029 3.157252 TCCGCCTGCCTCCAGATC 61.157 66.667 0.00 0.00 41.77 2.75
1028 1030 4.598894 CCGCCTGCCTCCAGATCG 62.599 72.222 0.00 0.00 41.77 3.69
1030 1032 4.166888 GCCTGCCTCCAGATCGCA 62.167 66.667 0.00 0.00 41.77 5.10
1032 1034 2.588314 CTGCCTCCAGATCGCAGC 60.588 66.667 6.61 0.00 43.12 5.25
1033 1035 4.519437 TGCCTCCAGATCGCAGCG 62.519 66.667 9.06 9.06 0.00 5.18
1035 1037 4.598894 CCTCCAGATCGCAGCGGG 62.599 72.222 16.42 8.33 0.00 6.13
1036 1038 3.531207 CTCCAGATCGCAGCGGGA 61.531 66.667 16.42 12.57 0.00 5.14
1037 1039 3.496875 CTCCAGATCGCAGCGGGAG 62.497 68.421 19.47 19.47 40.43 4.30
1038 1040 4.598894 CCAGATCGCAGCGGGAGG 62.599 72.222 16.42 8.48 0.00 4.30
1114 1583 0.600255 CAAGTCCGCCGTCTTCAAGT 60.600 55.000 0.00 0.00 0.00 3.16
1122 1591 1.660575 CGTCTTCAAGTCCACGCGT 60.661 57.895 5.58 5.58 0.00 6.01
1487 1968 1.751924 CTCCGGATTCCTCTTCGTCTT 59.248 52.381 3.57 0.00 0.00 3.01
1607 2088 5.660417 TGGAATTTGGGAGCAATAGCATAAA 59.340 36.000 0.00 0.00 45.49 1.40
1608 2089 6.155910 TGGAATTTGGGAGCAATAGCATAAAA 59.844 34.615 0.00 0.00 45.49 1.52
1686 2172 2.393271 ATGTCTCCTTGTAGCTGCAC 57.607 50.000 3.11 0.00 0.00 4.57
1770 2256 6.849085 TGCTCCATTTTGGTTGTATACATT 57.151 33.333 6.36 0.00 39.03 2.71
1985 2917 6.759497 AGTAAAATTGACCTGTAAGCATCC 57.241 37.500 0.00 0.00 0.00 3.51
1995 2927 1.899814 TGTAAGCATCCGTGTCCTCTT 59.100 47.619 0.00 0.00 0.00 2.85
1996 2928 2.301870 TGTAAGCATCCGTGTCCTCTTT 59.698 45.455 0.00 0.00 0.00 2.52
2080 3014 7.566509 GGACTTTCCCCTAGTTCTAATTAGGTA 59.433 40.741 12.54 0.00 36.84 3.08
2246 3222 7.275560 GGTAAATCCTAAATTGTGACATTGTGC 59.724 37.037 0.00 0.00 0.00 4.57
2296 3273 7.543868 TGTTATATGTGGTTGCAAAAGTATTGC 59.456 33.333 0.00 6.23 45.11 3.56
2309 3286 6.648725 GCAAAAGTATTGCCCAGTCATTTTAA 59.351 34.615 1.80 0.00 39.38 1.52
2683 3902 8.567285 AAACTCTTGATCTAATAACACTTGGG 57.433 34.615 0.00 0.00 0.00 4.12
2685 3904 6.215636 ACTCTTGATCTAATAACACTTGGGGT 59.784 38.462 0.00 0.00 0.00 4.95
2686 3905 7.027874 TCTTGATCTAATAACACTTGGGGTT 57.972 36.000 0.00 0.00 0.00 4.11
2695 3914 2.815158 ACACTTGGGGTTTCTGTTGTT 58.185 42.857 0.00 0.00 0.00 2.83
2702 3921 5.017294 TGGGGTTTCTGTTGTTCAATTTC 57.983 39.130 0.00 0.00 0.00 2.17
2703 3922 4.141824 TGGGGTTTCTGTTGTTCAATTTCC 60.142 41.667 0.00 0.00 0.00 3.13
2716 3935 6.744112 TGTTCAATTTCCAGATTGTTGTACC 58.256 36.000 0.00 0.00 38.04 3.34
2736 3955 1.348008 TTGATCTGGGCTGGCTAGGG 61.348 60.000 14.39 0.00 0.00 3.53
2737 3956 2.449322 ATCTGGGCTGGCTAGGGG 60.449 66.667 14.39 0.00 0.00 4.79
2742 3961 2.044946 GGCTGGCTAGGGGTGTTG 60.045 66.667 0.00 0.00 0.00 3.33
2743 3962 2.757077 GCTGGCTAGGGGTGTTGT 59.243 61.111 0.00 0.00 0.00 3.32
2749 3968 1.066358 GGCTAGGGGTGTTGTAGTCAC 60.066 57.143 0.00 0.00 35.36 3.67
2750 3969 1.403780 GCTAGGGGTGTTGTAGTCACG 60.404 57.143 0.00 0.00 36.76 4.35
2771 3990 8.800031 GTCACGAAATCTAGAGTATCAACTTTC 58.200 37.037 0.00 0.14 37.82 2.62
2774 3993 7.976734 ACGAAATCTAGAGTATCAACTTTCCTG 59.023 37.037 0.00 0.00 37.82 3.86
2806 4025 5.784578 TTTTTGGGACTCTTTTAAGCCTC 57.215 39.130 0.00 0.00 0.00 4.70
2807 4026 4.447138 TTTGGGACTCTTTTAAGCCTCA 57.553 40.909 0.00 0.00 0.00 3.86
2808 4027 4.657814 TTGGGACTCTTTTAAGCCTCAT 57.342 40.909 0.00 0.00 0.00 2.90
2809 4028 4.657814 TGGGACTCTTTTAAGCCTCATT 57.342 40.909 0.00 0.00 0.00 2.57
2810 4029 4.335416 TGGGACTCTTTTAAGCCTCATTG 58.665 43.478 0.00 0.00 0.00 2.82
2814 4033 6.433093 GGGACTCTTTTAAGCCTCATTGTTAA 59.567 38.462 0.00 0.00 0.00 2.01
2815 4034 7.306213 GGACTCTTTTAAGCCTCATTGTTAAC 58.694 38.462 0.00 0.00 0.00 2.01
2817 4036 7.649057 ACTCTTTTAAGCCTCATTGTTAACAC 58.351 34.615 8.07 0.00 0.00 3.32
2826 4060 6.435277 AGCCTCATTGTTAACACTGAAATCAT 59.565 34.615 23.80 10.07 35.56 2.45
2850 4084 1.274167 AGCCACATTTGTCAGCATTGG 59.726 47.619 5.36 0.00 0.00 3.16
2861 4095 7.517614 TTTGTCAGCATTGGTTTAGTTGATA 57.482 32.000 0.00 0.00 0.00 2.15
2866 4100 8.028938 GTCAGCATTGGTTTAGTTGATATTGTT 58.971 33.333 0.00 0.00 0.00 2.83
2874 4108 7.831690 TGGTTTAGTTGATATTGTTAGGCATGA 59.168 33.333 0.00 0.00 0.00 3.07
2891 4125 4.394300 GGCATGATATAGTTGCATCACTCC 59.606 45.833 0.00 0.00 38.12 3.85
2896 4130 0.323302 TAGTTGCATCACTCCGGCAA 59.677 50.000 0.00 0.00 44.50 4.52
2897 4131 4.490696 TTGCATCACTCCGGCAAA 57.509 50.000 0.00 0.00 43.82 3.68
2898 4132 2.959967 TTGCATCACTCCGGCAAAT 58.040 47.368 0.00 0.00 43.82 2.32
2899 4133 0.527113 TTGCATCACTCCGGCAAATG 59.473 50.000 0.00 0.00 43.82 2.32
2900 4134 1.226773 GCATCACTCCGGCAAATGC 60.227 57.895 12.85 12.85 41.14 3.56
2901 4135 1.660560 GCATCACTCCGGCAAATGCT 61.661 55.000 17.99 0.00 39.62 3.79
2902 4136 0.099968 CATCACTCCGGCAAATGCTG 59.900 55.000 7.25 7.25 46.63 4.41
2911 4145 1.826385 GGCAAATGCTGACAGTAGGT 58.174 50.000 3.99 0.00 41.70 3.08
2912 4146 2.162681 GGCAAATGCTGACAGTAGGTT 58.837 47.619 3.99 0.00 41.70 3.50
2913 4147 2.558359 GGCAAATGCTGACAGTAGGTTT 59.442 45.455 3.99 0.00 41.70 3.27
2914 4148 3.756434 GGCAAATGCTGACAGTAGGTTTA 59.244 43.478 3.99 0.00 41.70 2.01
2915 4149 4.399303 GGCAAATGCTGACAGTAGGTTTAT 59.601 41.667 3.99 0.00 41.70 1.40
2916 4150 5.105756 GGCAAATGCTGACAGTAGGTTTATT 60.106 40.000 3.99 0.00 41.70 1.40
2917 4151 6.030228 GCAAATGCTGACAGTAGGTTTATTC 58.970 40.000 3.99 0.00 38.21 1.75
2918 4152 6.555315 CAAATGCTGACAGTAGGTTTATTCC 58.445 40.000 3.99 0.00 0.00 3.01
2919 4153 3.857052 TGCTGACAGTAGGTTTATTCCG 58.143 45.455 3.99 0.00 0.00 4.30
2920 4154 3.259876 TGCTGACAGTAGGTTTATTCCGT 59.740 43.478 3.99 0.00 0.00 4.69
2921 4155 4.463539 TGCTGACAGTAGGTTTATTCCGTA 59.536 41.667 3.99 0.00 0.00 4.02
2922 4156 5.128171 TGCTGACAGTAGGTTTATTCCGTAT 59.872 40.000 3.99 0.00 0.00 3.06
2923 4157 6.321945 TGCTGACAGTAGGTTTATTCCGTATA 59.678 38.462 3.99 0.00 0.00 1.47
2924 4158 6.862090 GCTGACAGTAGGTTTATTCCGTATAG 59.138 42.308 3.99 0.00 0.00 1.31
2925 4159 7.255381 GCTGACAGTAGGTTTATTCCGTATAGA 60.255 40.741 3.99 0.00 0.00 1.98
2926 4160 8.523915 TGACAGTAGGTTTATTCCGTATAGAA 57.476 34.615 0.00 0.00 0.00 2.10
2927 4161 8.627403 TGACAGTAGGTTTATTCCGTATAGAAG 58.373 37.037 0.00 0.00 0.00 2.85
2928 4162 7.949434 ACAGTAGGTTTATTCCGTATAGAAGG 58.051 38.462 0.00 0.00 0.00 3.46
2929 4163 6.867293 CAGTAGGTTTATTCCGTATAGAAGGC 59.133 42.308 0.00 0.00 0.00 4.35
2930 4164 5.224821 AGGTTTATTCCGTATAGAAGGCC 57.775 43.478 0.00 0.00 0.00 5.19
2931 4165 4.657039 AGGTTTATTCCGTATAGAAGGCCA 59.343 41.667 5.01 0.00 0.00 5.36
2932 4166 4.995487 GGTTTATTCCGTATAGAAGGCCAG 59.005 45.833 5.01 0.00 0.00 4.85
2933 4167 2.841442 ATTCCGTATAGAAGGCCAGC 57.159 50.000 5.01 0.00 0.00 4.85
2934 4168 1.789523 TTCCGTATAGAAGGCCAGCT 58.210 50.000 5.01 3.66 0.00 4.24
2935 4169 1.789523 TCCGTATAGAAGGCCAGCTT 58.210 50.000 5.01 0.00 0.00 3.74
2936 4170 2.116238 TCCGTATAGAAGGCCAGCTTT 58.884 47.619 5.01 0.00 0.00 3.51
2937 4171 2.102588 TCCGTATAGAAGGCCAGCTTTC 59.897 50.000 5.01 6.39 33.02 2.62
2938 4172 2.158957 CCGTATAGAAGGCCAGCTTTCA 60.159 50.000 15.72 3.79 34.94 2.69
2939 4173 3.531538 CGTATAGAAGGCCAGCTTTCAA 58.468 45.455 15.72 0.00 34.94 2.69
2940 4174 4.130118 CGTATAGAAGGCCAGCTTTCAAT 58.870 43.478 15.72 0.19 34.94 2.57
2941 4175 4.024556 CGTATAGAAGGCCAGCTTTCAATG 60.025 45.833 15.72 4.02 34.94 2.82
2942 4176 2.299326 AGAAGGCCAGCTTTCAATGT 57.701 45.000 15.72 0.00 34.94 2.71
2943 4177 2.601905 AGAAGGCCAGCTTTCAATGTT 58.398 42.857 15.72 0.00 34.94 2.71
2944 4178 2.298163 AGAAGGCCAGCTTTCAATGTTG 59.702 45.455 15.72 0.00 34.94 3.33
2945 4179 1.999648 AGGCCAGCTTTCAATGTTGA 58.000 45.000 5.01 0.00 34.92 3.18
2946 4180 1.615392 AGGCCAGCTTTCAATGTTGAC 59.385 47.619 5.01 0.00 36.83 3.18
2947 4181 1.340889 GGCCAGCTTTCAATGTTGACA 59.659 47.619 0.00 0.00 36.83 3.58
2948 4182 2.224018 GGCCAGCTTTCAATGTTGACAA 60.224 45.455 0.00 0.00 36.83 3.18
2949 4183 3.456280 GCCAGCTTTCAATGTTGACAAA 58.544 40.909 0.00 0.00 36.83 2.83
2950 4184 3.492011 GCCAGCTTTCAATGTTGACAAAG 59.508 43.478 0.00 0.00 36.83 2.77
2951 4185 3.492011 CCAGCTTTCAATGTTGACAAAGC 59.508 43.478 17.96 17.96 43.07 3.51
2952 4186 4.660789 AGCTTTCAATGTTGACAAAGCT 57.339 36.364 20.72 20.72 45.56 3.74
2953 4187 4.703899 GCTTTCAATGTTGACAAAGCTG 57.296 40.909 18.20 0.00 41.23 4.24
2954 4188 3.492011 GCTTTCAATGTTGACAAAGCTGG 59.508 43.478 18.20 0.00 41.23 4.85
2955 4189 2.798976 TCAATGTTGACAAAGCTGGC 57.201 45.000 0.00 0.00 31.01 4.85
2956 4190 1.340889 TCAATGTTGACAAAGCTGGCC 59.659 47.619 0.00 0.00 31.01 5.36
2957 4191 1.068895 CAATGTTGACAAAGCTGGCCA 59.931 47.619 4.71 4.71 0.00 5.36
2958 4192 1.412079 ATGTTGACAAAGCTGGCCAA 58.588 45.000 7.01 0.00 0.00 4.52
2959 4193 1.189752 TGTTGACAAAGCTGGCCAAA 58.810 45.000 7.01 0.00 0.00 3.28
2960 4194 1.134848 TGTTGACAAAGCTGGCCAAAC 60.135 47.619 7.01 6.29 0.00 2.93
2961 4195 0.463620 TTGACAAAGCTGGCCAAACC 59.536 50.000 7.01 0.00 39.84 3.27
2969 4203 3.776158 TGGCCAAACCATGTCAGC 58.224 55.556 0.61 0.00 46.36 4.26
2970 4204 1.153524 TGGCCAAACCATGTCAGCT 59.846 52.632 0.61 0.00 46.36 4.24
2971 4205 1.180456 TGGCCAAACCATGTCAGCTG 61.180 55.000 0.61 7.63 46.36 4.24
2972 4206 1.588082 GCCAAACCATGTCAGCTGG 59.412 57.895 15.13 0.00 39.80 4.85
2973 4207 1.588082 CCAAACCATGTCAGCTGGC 59.412 57.895 12.53 12.53 37.27 4.85
2974 4208 1.180456 CCAAACCATGTCAGCTGGCA 61.180 55.000 25.54 25.54 37.27 4.92
2975 4209 0.038892 CAAACCATGTCAGCTGGCAC 60.039 55.000 25.88 11.20 37.27 5.01
2976 4210 0.467844 AAACCATGTCAGCTGGCACA 60.468 50.000 25.88 17.20 37.27 4.57
2977 4211 1.174712 AACCATGTCAGCTGGCACAC 61.175 55.000 25.88 9.96 37.27 3.82
2978 4212 2.338015 CCATGTCAGCTGGCACACC 61.338 63.158 25.88 0.36 29.57 4.16
2979 4213 1.601477 CATGTCAGCTGGCACACCA 60.601 57.895 25.88 0.00 46.51 4.17
3066 4300 1.202110 CGCAGGACTTTGCAGCTTATG 60.202 52.381 0.00 0.00 44.28 1.90
3079 4313 5.255687 TGCAGCTTATGAGGAAAAGATTGA 58.744 37.500 0.00 0.00 0.00 2.57
3152 4386 9.515226 ACACACATAATTGTCAAGGTAGTATTT 57.485 29.630 0.00 0.00 32.34 1.40
3260 4494 0.039618 GGGCAAGGATCTTGTGGGAA 59.960 55.000 9.07 0.00 0.00 3.97
3281 4515 4.537135 ATCGGAGTTAAAGCAAGTGAGA 57.463 40.909 0.00 0.00 0.00 3.27
3305 4539 1.109920 TAGGATGGGTCGAGAGCTGC 61.110 60.000 0.00 0.00 0.00 5.25
3725 4959 1.646447 TCCCTGGATGTAGAGGTGTCT 59.354 52.381 0.00 0.00 36.75 3.41
4349 5598 4.103153 TGAGGTTGTTGATGAACTCCTTCT 59.897 41.667 11.73 0.00 37.30 2.85
4711 5960 3.322828 ACAATGCAATGAAAGCTGAAGGT 59.677 39.130 9.20 0.00 0.00 3.50
4755 6004 6.844696 TGAACACAGCTTGTAACTAGAAAG 57.155 37.500 0.00 0.00 37.51 2.62
5189 7163 1.266989 CTCGAAACACAAAAGGGGAGC 59.733 52.381 0.00 0.00 0.00 4.70
5192 7166 1.068588 GAAACACAAAAGGGGAGCCAC 59.931 52.381 0.00 0.00 0.00 5.01
5435 7410 5.071788 TCTGGGTTTCAGTCTGTACAGATTT 59.928 40.000 27.54 16.46 43.76 2.17
5438 7413 5.998363 GGGTTTCAGTCTGTACAGATTTTCT 59.002 40.000 27.54 17.01 39.97 2.52
5442 7417 5.794894 TCAGTCTGTACAGATTTTCTTCCC 58.205 41.667 27.54 11.89 39.97 3.97
5445 7420 6.712547 CAGTCTGTACAGATTTTCTTCCCTTT 59.287 38.462 27.54 0.00 39.97 3.11
5446 7421 6.712547 AGTCTGTACAGATTTTCTTCCCTTTG 59.287 38.462 27.54 0.00 39.97 2.77
5447 7422 6.003950 TCTGTACAGATTTTCTTCCCTTTGG 58.996 40.000 21.74 0.00 31.41 3.28
5448 7423 4.522789 TGTACAGATTTTCTTCCCTTTGGC 59.477 41.667 0.00 0.00 0.00 4.52
5449 7424 3.849527 ACAGATTTTCTTCCCTTTGGCT 58.150 40.909 0.00 0.00 0.00 4.75
5450 7425 3.575687 ACAGATTTTCTTCCCTTTGGCTG 59.424 43.478 0.00 0.00 0.00 4.85
5451 7426 3.056322 CAGATTTTCTTCCCTTTGGCTGG 60.056 47.826 0.00 0.00 0.00 4.85
5452 7427 1.715785 TTTTCTTCCCTTTGGCTGGG 58.284 50.000 4.76 4.76 45.90 4.45
5453 7428 0.560688 TTTCTTCCCTTTGGCTGGGT 59.439 50.000 9.81 0.00 44.84 4.51
5454 7429 0.560688 TTCTTCCCTTTGGCTGGGTT 59.439 50.000 9.81 0.00 44.84 4.11
5455 7430 0.560688 TCTTCCCTTTGGCTGGGTTT 59.439 50.000 9.81 0.00 44.84 3.27
5456 7431 0.969149 CTTCCCTTTGGCTGGGTTTC 59.031 55.000 9.81 0.00 44.84 2.78
5457 7432 0.263172 TTCCCTTTGGCTGGGTTTCA 59.737 50.000 9.81 0.00 44.84 2.69
5458 7433 0.178964 TCCCTTTGGCTGGGTTTCAG 60.179 55.000 9.81 0.00 44.84 3.02
5459 7434 0.469892 CCCTTTGGCTGGGTTTCAGT 60.470 55.000 3.24 0.00 45.08 3.41
5465 7440 1.809684 GGCTGGGTTTCAGTCTGTAC 58.190 55.000 0.00 0.00 44.34 2.90
5466 7441 1.071699 GGCTGGGTTTCAGTCTGTACA 59.928 52.381 0.00 0.00 44.34 2.90
5467 7442 2.417719 GCTGGGTTTCAGTCTGTACAG 58.582 52.381 17.17 17.17 45.08 2.74
5468 7443 2.037251 GCTGGGTTTCAGTCTGTACAGA 59.963 50.000 21.74 21.74 45.08 3.41
5469 7444 3.307059 GCTGGGTTTCAGTCTGTACAGAT 60.307 47.826 27.54 14.16 45.08 2.90
5470 7445 4.248859 CTGGGTTTCAGTCTGTACAGATG 58.751 47.826 27.54 23.24 39.97 2.90
5471 7446 3.003480 GGGTTTCAGTCTGTACAGATGC 58.997 50.000 27.54 16.10 39.97 3.91
5472 7447 3.307059 GGGTTTCAGTCTGTACAGATGCT 60.307 47.826 27.54 18.06 39.97 3.79
5473 7448 3.929610 GGTTTCAGTCTGTACAGATGCTC 59.070 47.826 27.54 15.04 39.97 4.26
5474 7449 3.876274 TTCAGTCTGTACAGATGCTCC 57.124 47.619 27.54 14.68 39.97 4.70
5475 7450 3.093057 TCAGTCTGTACAGATGCTCCT 57.907 47.619 27.54 16.65 39.97 3.69
5476 7451 3.435275 TCAGTCTGTACAGATGCTCCTT 58.565 45.455 27.54 6.18 39.97 3.36
5477 7452 3.445450 TCAGTCTGTACAGATGCTCCTTC 59.555 47.826 27.54 12.58 39.97 3.46
5478 7453 3.446873 CAGTCTGTACAGATGCTCCTTCT 59.553 47.826 27.54 14.58 39.97 2.85
5479 7454 3.699038 AGTCTGTACAGATGCTCCTTCTC 59.301 47.826 27.54 11.19 39.97 2.87
5480 7455 3.027412 TCTGTACAGATGCTCCTTCTCC 58.973 50.000 21.74 0.00 31.41 3.71
5481 7456 3.030291 CTGTACAGATGCTCCTTCTCCT 58.970 50.000 18.45 0.00 0.00 3.69
5482 7457 3.445008 TGTACAGATGCTCCTTCTCCTT 58.555 45.455 0.00 0.00 0.00 3.36
5483 7458 3.840666 TGTACAGATGCTCCTTCTCCTTT 59.159 43.478 0.00 0.00 0.00 3.11
5484 7459 5.023452 TGTACAGATGCTCCTTCTCCTTTA 58.977 41.667 0.00 0.00 0.00 1.85
5485 7460 5.483937 TGTACAGATGCTCCTTCTCCTTTAA 59.516 40.000 0.00 0.00 0.00 1.52
5486 7461 5.707066 ACAGATGCTCCTTCTCCTTTAAT 57.293 39.130 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.480308 CGATGCGCTAGATGATTACGATC 59.520 47.826 9.73 0.00 0.00 3.69
1 2 3.119814 ACGATGCGCTAGATGATTACGAT 60.120 43.478 9.73 0.00 0.00 3.73
3 4 2.585845 ACGATGCGCTAGATGATTACG 58.414 47.619 9.73 0.00 0.00 3.18
4 5 5.612435 CATACGATGCGCTAGATGATTAC 57.388 43.478 9.73 0.00 0.00 1.89
29 30 4.262894 GGAGGTTGAATTAGAGTGTGTGGA 60.263 45.833 0.00 0.00 0.00 4.02
50 51 2.438614 CGAGTGAGAGAGCGGGGA 60.439 66.667 0.00 0.00 0.00 4.81
55 56 0.098728 GTGAGAGCGAGTGAGAGAGC 59.901 60.000 0.00 0.00 0.00 4.09
59 60 0.593618 GTGTGTGAGAGCGAGTGAGA 59.406 55.000 0.00 0.00 0.00 3.27
64 65 1.871080 AAAAGGTGTGTGAGAGCGAG 58.129 50.000 0.00 0.00 0.00 5.03
78 79 1.804748 GGTAGGAGACGCACAAAAAGG 59.195 52.381 0.00 0.00 0.00 3.11
111 112 0.109781 GCGGCGTTGTCAATGTGAAT 60.110 50.000 9.37 0.00 0.00 2.57
124 125 3.825160 ATGGTGTTGTGAGCGGCGT 62.825 57.895 9.37 0.00 0.00 5.68
151 152 2.286872 AGCGATGATGGCAAGAGAAAG 58.713 47.619 1.54 0.00 0.00 2.62
167 168 0.624254 TAGAGGAGGAAGGTGAGCGA 59.376 55.000 0.00 0.00 0.00 4.93
200 201 1.866015 AGTAGGTGTGAGCCATAGCA 58.134 50.000 4.53 0.00 43.56 3.49
201 202 2.288518 GCTAGTAGGTGTGAGCCATAGC 60.289 54.545 0.00 0.00 40.32 2.97
238 239 2.815647 GACACTGCCCTGTAGCGC 60.816 66.667 0.00 0.00 34.65 5.92
289 290 2.413837 CGTAGTTTAGCCAACAGTGCT 58.586 47.619 0.00 0.00 42.81 4.40
290 291 1.136057 GCGTAGTTTAGCCAACAGTGC 60.136 52.381 0.00 0.00 37.93 4.40
304 305 2.552802 CGGAGGATATCGGCGTAGT 58.447 57.895 6.85 0.00 0.00 2.73
323 324 2.820037 GGCCCACTTGTAGCTCGC 60.820 66.667 0.00 0.00 0.00 5.03
326 327 0.250901 CTTGTGGCCCACTTGTAGCT 60.251 55.000 16.23 0.00 35.11 3.32
328 329 2.946947 CCTTGTGGCCCACTTGTAG 58.053 57.895 16.23 7.11 35.11 2.74
394 395 4.295119 ACACACACTCGTCGCCCC 62.295 66.667 0.00 0.00 0.00 5.80
396 397 3.702555 GCACACACACTCGTCGCC 61.703 66.667 0.00 0.00 0.00 5.54
400 401 0.108377 TTCACAGCACACACACTCGT 60.108 50.000 0.00 0.00 0.00 4.18
407 408 2.002899 CGTTCGTTCACAGCACACA 58.997 52.632 0.00 0.00 0.00 3.72
408 409 1.367665 GCGTTCGTTCACAGCACAC 60.368 57.895 0.00 0.00 0.00 3.82
409 410 2.530497 GGCGTTCGTTCACAGCACA 61.530 57.895 0.00 0.00 0.00 4.57
522 523 1.747355 GATCACCATCCCAGCAAAGTG 59.253 52.381 0.00 0.00 0.00 3.16
523 524 1.355381 TGATCACCATCCCAGCAAAGT 59.645 47.619 0.00 0.00 0.00 2.66
526 527 3.575506 GTGATCACCATCCCAGCAA 57.424 52.632 15.31 0.00 0.00 3.91
559 560 1.373497 CTCTGCACAGGTCACGGTC 60.373 63.158 0.00 0.00 0.00 4.79
563 564 2.139118 GAGAAACTCTGCACAGGTCAC 58.861 52.381 0.00 0.00 0.00 3.67
567 568 1.294659 GGCGAGAAACTCTGCACAGG 61.295 60.000 13.69 0.00 33.94 4.00
569 570 1.664649 CGGCGAGAAACTCTGCACA 60.665 57.895 0.00 0.00 33.94 4.57
570 571 2.383527 CCGGCGAGAAACTCTGCAC 61.384 63.158 9.30 6.22 33.94 4.57
583 584 1.660575 GTCGACACATATCCCGGCG 60.661 63.158 11.55 0.00 0.00 6.46
585 586 0.032130 CCTGTCGACACATATCCCGG 59.968 60.000 15.76 8.03 0.00 5.73
591 592 1.544246 CACTCACCCTGTCGACACATA 59.456 52.381 15.76 0.00 0.00 2.29
597 598 3.311110 GGCCACTCACCCTGTCGA 61.311 66.667 0.00 0.00 0.00 4.20
598 599 3.314331 AGGCCACTCACCCTGTCG 61.314 66.667 5.01 0.00 0.00 4.35
602 603 3.958860 GTGCAGGCCACTCACCCT 61.959 66.667 5.01 0.00 41.35 4.34
609 610 1.815421 CGGTCATAGTGCAGGCCAC 60.815 63.158 5.01 0.00 45.01 5.01
610 611 2.584064 CGGTCATAGTGCAGGCCA 59.416 61.111 5.01 0.00 0.00 5.36
611 612 2.897350 GCGGTCATAGTGCAGGCC 60.897 66.667 0.00 0.00 0.00 5.19
615 616 3.387091 ACGGGCGGTCATAGTGCA 61.387 61.111 0.00 0.00 0.00 4.57
616 617 2.890474 CACGGGCGGTCATAGTGC 60.890 66.667 0.00 0.00 0.00 4.40
816 818 2.125106 GTGATCGACCCTGCCCAC 60.125 66.667 0.00 0.00 0.00 4.61
855 857 4.379174 TCTGGAAGAGCCGTTTGC 57.621 55.556 0.00 0.00 38.67 3.68
867 869 1.376466 GAAGCTGTGGCCTTCTGGA 59.624 57.895 3.32 0.00 39.73 3.86
868 870 2.037136 CGAAGCTGTGGCCTTCTGG 61.037 63.158 3.32 0.00 39.73 3.86
869 871 0.603707 TTCGAAGCTGTGGCCTTCTG 60.604 55.000 3.32 2.62 39.73 3.02
870 872 0.326264 ATTCGAAGCTGTGGCCTTCT 59.674 50.000 3.32 0.00 39.73 2.85
871 873 0.729690 GATTCGAAGCTGTGGCCTTC 59.270 55.000 6.08 0.00 39.73 3.46
872 874 1.021390 CGATTCGAAGCTGTGGCCTT 61.021 55.000 12.15 0.00 39.73 4.35
873 875 1.448540 CGATTCGAAGCTGTGGCCT 60.449 57.895 12.15 0.00 39.73 5.19
874 876 2.464459 CCGATTCGAAGCTGTGGCC 61.464 63.158 12.15 0.00 39.73 5.36
875 877 3.093278 CCGATTCGAAGCTGTGGC 58.907 61.111 12.15 0.00 39.06 5.01
876 878 2.464459 GGCCGATTCGAAGCTGTGG 61.464 63.158 12.15 6.65 0.00 4.17
877 879 2.464459 GGGCCGATTCGAAGCTGTG 61.464 63.158 12.15 1.13 0.00 3.66
878 880 2.125106 GGGCCGATTCGAAGCTGT 60.125 61.111 12.15 0.00 0.00 4.40
879 881 2.897350 GGGGCCGATTCGAAGCTG 60.897 66.667 12.15 6.12 0.00 4.24
880 882 4.176752 GGGGGCCGATTCGAAGCT 62.177 66.667 12.15 0.00 0.00 3.74
902 904 0.614697 AAATTTTGAGGAGGCGGGGG 60.615 55.000 0.00 0.00 0.00 5.40
903 905 0.817654 GAAATTTTGAGGAGGCGGGG 59.182 55.000 0.00 0.00 0.00 5.73
904 906 0.817654 GGAAATTTTGAGGAGGCGGG 59.182 55.000 0.00 0.00 0.00 6.13
905 907 0.817654 GGGAAATTTTGAGGAGGCGG 59.182 55.000 0.00 0.00 0.00 6.13
906 908 1.202348 GTGGGAAATTTTGAGGAGGCG 59.798 52.381 0.00 0.00 0.00 5.52
907 909 1.550524 GGTGGGAAATTTTGAGGAGGC 59.449 52.381 0.00 0.00 0.00 4.70
908 910 3.092301 GAGGTGGGAAATTTTGAGGAGG 58.908 50.000 0.00 0.00 0.00 4.30
909 911 4.013050 GAGAGGTGGGAAATTTTGAGGAG 58.987 47.826 0.00 0.00 0.00 3.69
910 912 3.245264 GGAGAGGTGGGAAATTTTGAGGA 60.245 47.826 0.00 0.00 0.00 3.71
911 913 3.092301 GGAGAGGTGGGAAATTTTGAGG 58.908 50.000 0.00 0.00 0.00 3.86
912 914 3.092301 GGGAGAGGTGGGAAATTTTGAG 58.908 50.000 0.00 0.00 0.00 3.02
913 915 2.225267 GGGGAGAGGTGGGAAATTTTGA 60.225 50.000 0.00 0.00 0.00 2.69
914 916 2.179427 GGGGAGAGGTGGGAAATTTTG 58.821 52.381 0.00 0.00 0.00 2.44
915 917 1.078823 GGGGGAGAGGTGGGAAATTTT 59.921 52.381 0.00 0.00 0.00 1.82
916 918 0.710588 GGGGGAGAGGTGGGAAATTT 59.289 55.000 0.00 0.00 0.00 1.82
917 919 2.410039 GGGGGAGAGGTGGGAAATT 58.590 57.895 0.00 0.00 0.00 1.82
918 920 4.188671 GGGGGAGAGGTGGGAAAT 57.811 61.111 0.00 0.00 0.00 2.17
932 934 1.917872 TTGTTCCAAGAATTCGGGGG 58.082 50.000 16.20 11.59 0.00 5.40
933 935 2.427095 GGATTGTTCCAAGAATTCGGGG 59.573 50.000 16.20 13.71 42.12 5.73
934 936 2.427095 GGGATTGTTCCAAGAATTCGGG 59.573 50.000 11.67 11.67 44.60 5.14
935 937 2.427095 GGGGATTGTTCCAAGAATTCGG 59.573 50.000 0.00 0.00 44.60 4.30
936 938 2.427095 GGGGGATTGTTCCAAGAATTCG 59.573 50.000 0.00 0.00 44.60 3.34
937 939 3.440127 TGGGGGATTGTTCCAAGAATTC 58.560 45.455 0.00 0.00 44.60 2.17
938 940 3.558608 TGGGGGATTGTTCCAAGAATT 57.441 42.857 0.00 0.00 44.60 2.17
939 941 3.558608 TTGGGGGATTGTTCCAAGAAT 57.441 42.857 0.00 0.00 44.60 2.40
940 942 3.336509 TTTGGGGGATTGTTCCAAGAA 57.663 42.857 0.00 0.00 44.60 2.52
941 943 3.440127 GATTTGGGGGATTGTTCCAAGA 58.560 45.455 0.00 0.00 44.60 3.02
942 944 2.166254 CGATTTGGGGGATTGTTCCAAG 59.834 50.000 0.00 0.00 44.60 3.61
943 945 2.175202 CGATTTGGGGGATTGTTCCAA 58.825 47.619 0.00 0.00 44.60 3.53
944 946 1.618345 CCGATTTGGGGGATTGTTCCA 60.618 52.381 0.00 0.00 44.60 3.53
945 947 1.111277 CCGATTTGGGGGATTGTTCC 58.889 55.000 0.00 0.00 41.77 3.62
946 948 2.137810 TCCGATTTGGGGGATTGTTC 57.862 50.000 0.00 0.00 38.76 3.18
947 949 2.176045 GTTCCGATTTGGGGGATTGTT 58.824 47.619 0.00 0.00 38.76 2.83
948 950 1.618616 GGTTCCGATTTGGGGGATTGT 60.619 52.381 0.00 0.00 38.76 2.71
949 951 1.111277 GGTTCCGATTTGGGGGATTG 58.889 55.000 0.00 0.00 38.76 2.67
950 952 0.032515 GGGTTCCGATTTGGGGGATT 60.033 55.000 0.00 0.00 38.76 3.01
951 953 1.618586 GGGTTCCGATTTGGGGGAT 59.381 57.895 0.00 0.00 38.76 3.85
952 954 2.618449 GGGGTTCCGATTTGGGGGA 61.618 63.158 0.00 0.00 38.76 4.81
953 955 2.043349 GGGGTTCCGATTTGGGGG 60.043 66.667 0.00 0.00 38.76 5.40
954 956 1.076995 GAGGGGTTCCGATTTGGGG 60.077 63.158 0.00 0.00 38.76 4.96
955 957 1.076995 GGAGGGGTTCCGATTTGGG 60.077 63.158 0.00 0.00 35.91 4.12
956 958 4.657952 GGAGGGGTTCCGATTTGG 57.342 61.111 0.00 0.00 35.91 3.28
963 965 2.001838 GAAGGGAGGGAGGGGTTCC 61.002 68.421 0.00 0.00 46.00 3.62
964 966 2.001838 GGAAGGGAGGGAGGGGTTC 61.002 68.421 0.00 0.00 0.00 3.62
965 967 2.127528 GGAAGGGAGGGAGGGGTT 59.872 66.667 0.00 0.00 0.00 4.11
966 968 2.882143 AGGAAGGGAGGGAGGGGT 60.882 66.667 0.00 0.00 0.00 4.95
967 969 2.040359 GAGGAAGGGAGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
968 970 2.040359 GGAGGAAGGGAGGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
969 971 2.040359 GGGAGGAAGGGAGGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
970 972 2.040359 GGGGAGGAAGGGAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
971 973 3.707189 GGGGGAGGAAGGGAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
985 987 4.873129 CATGACGACGAGCGGGGG 62.873 72.222 0.00 0.00 46.49 5.40
1009 1011 3.160047 ATCTGGAGGCAGGCGGAG 61.160 66.667 0.00 0.00 0.00 4.63
1010 1012 3.157252 GATCTGGAGGCAGGCGGA 61.157 66.667 0.00 0.00 0.00 5.54
1011 1013 4.598894 CGATCTGGAGGCAGGCGG 62.599 72.222 0.00 0.00 0.00 6.13
1013 1015 4.166888 TGCGATCTGGAGGCAGGC 62.167 66.667 0.00 0.00 32.07 4.85
1016 1018 4.519437 CGCTGCGATCTGGAGGCA 62.519 66.667 18.66 1.05 36.36 4.75
1018 1020 4.598894 CCCGCTGCGATCTGGAGG 62.599 72.222 25.45 10.34 36.36 4.30
1019 1021 3.496875 CTCCCGCTGCGATCTGGAG 62.497 68.421 25.45 24.40 39.42 3.86
1020 1022 3.531207 CTCCCGCTGCGATCTGGA 61.531 66.667 25.45 19.46 0.00 3.86
1021 1023 4.598894 CCTCCCGCTGCGATCTGG 62.599 72.222 25.45 16.05 0.00 3.86
1122 1591 2.034066 CTTTCTTGGGGCAGGCGA 59.966 61.111 0.00 0.00 0.00 5.54
1198 1667 0.898789 TCTTGTGTCCCTCCTCCGTC 60.899 60.000 0.00 0.00 0.00 4.79
1364 1845 1.305381 CCGTCCTCCTCCTCTGGTT 60.305 63.158 0.00 0.00 0.00 3.67
1487 1968 1.141019 GCGTCCGAGTAATCCAGCA 59.859 57.895 0.00 0.00 0.00 4.41
1607 2088 5.678616 GCAACGCCATATACCAAACAAGATT 60.679 40.000 0.00 0.00 0.00 2.40
1608 2089 4.202010 GCAACGCCATATACCAAACAAGAT 60.202 41.667 0.00 0.00 0.00 2.40
1686 2172 8.567285 AACTCTTTTCATGTGATTACTAAGGG 57.433 34.615 0.00 0.00 0.00 3.95
1770 2256 4.141344 ACCTAGGCCTTGTTGAACAACTTA 60.141 41.667 12.58 0.00 41.67 2.24
2024 2956 5.588648 AGACAAAACGATGAAAGGAGAAACA 59.411 36.000 0.00 0.00 0.00 2.83
2080 3014 6.549364 TGAGATTTCATTTGTACTGGTTGGTT 59.451 34.615 0.00 0.00 0.00 3.67
2096 3030 4.922206 AGGCTTTGTATGGTGAGATTTCA 58.078 39.130 0.00 0.00 0.00 2.69
2100 3034 6.313519 TCTTAAGGCTTTGTATGGTGAGAT 57.686 37.500 4.45 0.00 0.00 2.75
2296 3273 7.372451 TGATTCTACGTTTAAAATGACTGGG 57.628 36.000 0.00 0.00 0.00 4.45
2309 3286 6.365247 GTGTAACAGTGACATGATTCTACGTT 59.635 38.462 0.00 0.00 36.32 3.99
2663 3882 7.611855 AGAAACCCCAAGTGTTATTAGATCAAG 59.388 37.037 0.00 0.00 0.00 3.02
2666 3885 6.884836 ACAGAAACCCCAAGTGTTATTAGATC 59.115 38.462 0.00 0.00 0.00 2.75
2668 3887 6.195600 ACAGAAACCCCAAGTGTTATTAGA 57.804 37.500 0.00 0.00 0.00 2.10
2676 3895 2.757868 TGAACAACAGAAACCCCAAGTG 59.242 45.455 0.00 0.00 0.00 3.16
2678 3897 4.670896 ATTGAACAACAGAAACCCCAAG 57.329 40.909 0.00 0.00 0.00 3.61
2679 3898 5.423886 GAAATTGAACAACAGAAACCCCAA 58.576 37.500 0.00 0.00 0.00 4.12
2683 3902 5.901552 TCTGGAAATTGAACAACAGAAACC 58.098 37.500 0.00 0.00 32.60 3.27
2685 3904 7.555087 ACAATCTGGAAATTGAACAACAGAAA 58.445 30.769 3.78 0.00 38.64 2.52
2686 3905 7.111247 ACAATCTGGAAATTGAACAACAGAA 57.889 32.000 3.78 0.00 38.64 3.02
2695 3914 6.775142 TCAAGGTACAACAATCTGGAAATTGA 59.225 34.615 3.78 0.00 38.64 2.57
2702 3921 5.808042 CAGATCAAGGTACAACAATCTGG 57.192 43.478 14.80 0.00 37.52 3.86
2703 3922 4.637534 CCCAGATCAAGGTACAACAATCTG 59.362 45.833 15.31 15.31 39.71 2.90
2716 3935 0.108207 CCTAGCCAGCCCAGATCAAG 59.892 60.000 0.00 0.00 0.00 3.02
2736 3955 5.706916 TCTAGATTTCGTGACTACAACACC 58.293 41.667 0.00 0.00 35.17 4.16
2737 3956 6.380190 ACTCTAGATTTCGTGACTACAACAC 58.620 40.000 0.00 0.00 35.26 3.32
2742 3961 8.614346 AGTTGATACTCTAGATTTCGTGACTAC 58.386 37.037 0.00 0.00 0.00 2.73
2743 3962 8.734218 AGTTGATACTCTAGATTTCGTGACTA 57.266 34.615 0.00 0.00 0.00 2.59
2749 3968 7.976734 ACAGGAAAGTTGATACTCTAGATTTCG 59.023 37.037 0.00 0.00 31.99 3.46
2806 4025 7.061441 GCTGTGATGATTTCAGTGTTAACAATG 59.939 37.037 25.98 25.98 42.66 2.82
2807 4026 7.086376 GCTGTGATGATTTCAGTGTTAACAAT 58.914 34.615 10.51 6.24 34.17 2.71
2808 4027 6.437928 GCTGTGATGATTTCAGTGTTAACAA 58.562 36.000 10.51 0.00 34.17 2.83
2809 4028 5.048782 GGCTGTGATGATTTCAGTGTTAACA 60.049 40.000 3.59 3.59 34.17 2.41
2810 4029 5.048782 TGGCTGTGATGATTTCAGTGTTAAC 60.049 40.000 0.00 0.00 34.17 2.01
2814 4033 2.816087 GTGGCTGTGATGATTTCAGTGT 59.184 45.455 0.00 0.00 34.17 3.55
2815 4034 2.815503 TGTGGCTGTGATGATTTCAGTG 59.184 45.455 0.00 0.00 34.17 3.66
2817 4036 4.713824 AATGTGGCTGTGATGATTTCAG 57.286 40.909 0.00 0.00 34.17 3.02
2826 4060 0.953727 GCTGACAAATGTGGCTGTGA 59.046 50.000 0.00 0.00 34.27 3.58
2861 4095 7.666804 TGATGCAACTATATCATGCCTAACAAT 59.333 33.333 0.00 0.00 39.31 2.71
2866 4100 6.364568 AGTGATGCAACTATATCATGCCTA 57.635 37.500 0.00 0.00 39.31 3.93
2874 4108 2.368548 TGCCGGAGTGATGCAACTATAT 59.631 45.455 5.05 0.00 30.85 0.86
2891 4125 0.729116 CCTACTGTCAGCATTTGCCG 59.271 55.000 0.00 0.00 43.38 5.69
2896 4130 4.876107 CGGAATAAACCTACTGTCAGCATT 59.124 41.667 0.00 0.00 0.00 3.56
2897 4131 4.081087 ACGGAATAAACCTACTGTCAGCAT 60.081 41.667 0.00 0.00 0.00 3.79
2898 4132 3.259876 ACGGAATAAACCTACTGTCAGCA 59.740 43.478 0.00 0.00 0.00 4.41
2899 4133 3.858247 ACGGAATAAACCTACTGTCAGC 58.142 45.455 0.00 0.00 0.00 4.26
2900 4134 8.162878 TCTATACGGAATAAACCTACTGTCAG 57.837 38.462 0.00 0.00 0.00 3.51
2901 4135 8.523915 TTCTATACGGAATAAACCTACTGTCA 57.476 34.615 0.00 0.00 0.00 3.58
2902 4136 8.081025 CCTTCTATACGGAATAAACCTACTGTC 58.919 40.741 0.00 0.00 0.00 3.51
2903 4137 7.471120 GCCTTCTATACGGAATAAACCTACTGT 60.471 40.741 0.00 0.00 0.00 3.55
2904 4138 6.867293 GCCTTCTATACGGAATAAACCTACTG 59.133 42.308 0.00 0.00 0.00 2.74
2905 4139 6.014755 GGCCTTCTATACGGAATAAACCTACT 60.015 42.308 0.00 0.00 0.00 2.57
2906 4140 6.162079 GGCCTTCTATACGGAATAAACCTAC 58.838 44.000 0.00 0.00 0.00 3.18
2907 4141 5.840149 TGGCCTTCTATACGGAATAAACCTA 59.160 40.000 3.32 0.00 0.00 3.08
2908 4142 4.657039 TGGCCTTCTATACGGAATAAACCT 59.343 41.667 3.32 0.00 0.00 3.50
2909 4143 4.964593 TGGCCTTCTATACGGAATAAACC 58.035 43.478 3.32 0.00 0.00 3.27
2910 4144 4.451435 GCTGGCCTTCTATACGGAATAAAC 59.549 45.833 3.32 0.00 0.00 2.01
2911 4145 4.347000 AGCTGGCCTTCTATACGGAATAAA 59.653 41.667 3.32 0.00 0.00 1.40
2912 4146 3.901844 AGCTGGCCTTCTATACGGAATAA 59.098 43.478 3.32 0.00 0.00 1.40
2913 4147 3.507411 AGCTGGCCTTCTATACGGAATA 58.493 45.455 3.32 0.00 0.00 1.75
2914 4148 2.330216 AGCTGGCCTTCTATACGGAAT 58.670 47.619 3.32 0.00 0.00 3.01
2915 4149 1.789523 AGCTGGCCTTCTATACGGAA 58.210 50.000 3.32 0.00 0.00 4.30
2916 4150 1.789523 AAGCTGGCCTTCTATACGGA 58.210 50.000 3.32 0.00 0.00 4.69
2917 4151 2.158957 TGAAAGCTGGCCTTCTATACGG 60.159 50.000 3.32 0.00 31.99 4.02
2918 4152 3.179443 TGAAAGCTGGCCTTCTATACG 57.821 47.619 3.32 0.00 31.99 3.06
2919 4153 4.884164 ACATTGAAAGCTGGCCTTCTATAC 59.116 41.667 3.32 0.00 31.99 1.47
2920 4154 5.116084 ACATTGAAAGCTGGCCTTCTATA 57.884 39.130 3.32 0.00 31.99 1.31
2921 4155 3.973425 ACATTGAAAGCTGGCCTTCTAT 58.027 40.909 3.32 0.00 31.99 1.98
2922 4156 3.439857 ACATTGAAAGCTGGCCTTCTA 57.560 42.857 3.32 0.00 31.99 2.10
2923 4157 2.298163 CAACATTGAAAGCTGGCCTTCT 59.702 45.455 3.32 0.00 31.99 2.85
2924 4158 2.297033 TCAACATTGAAAGCTGGCCTTC 59.703 45.455 3.32 0.00 33.55 3.46
2925 4159 2.036346 GTCAACATTGAAAGCTGGCCTT 59.964 45.455 3.32 0.00 39.21 4.35
2926 4160 1.615392 GTCAACATTGAAAGCTGGCCT 59.385 47.619 3.32 0.00 39.21 5.19
2927 4161 1.340889 TGTCAACATTGAAAGCTGGCC 59.659 47.619 0.00 0.00 39.21 5.36
2928 4162 2.798976 TGTCAACATTGAAAGCTGGC 57.201 45.000 0.00 0.00 39.21 4.85
2929 4163 3.492011 GCTTTGTCAACATTGAAAGCTGG 59.508 43.478 17.82 1.96 41.23 4.85
2930 4164 4.703899 GCTTTGTCAACATTGAAAGCTG 57.296 40.909 17.82 1.95 41.23 4.24
2931 4165 4.660789 AGCTTTGTCAACATTGAAAGCT 57.339 36.364 20.42 20.42 45.56 3.74
2932 4166 3.492011 CCAGCTTTGTCAACATTGAAAGC 59.508 43.478 17.57 17.57 43.07 3.51
2933 4167 3.492011 GCCAGCTTTGTCAACATTGAAAG 59.508 43.478 0.00 0.00 39.21 2.62
2934 4168 3.456280 GCCAGCTTTGTCAACATTGAAA 58.544 40.909 0.00 0.00 39.21 2.69
2935 4169 2.224018 GGCCAGCTTTGTCAACATTGAA 60.224 45.455 0.00 0.00 39.21 2.69
2936 4170 1.340889 GGCCAGCTTTGTCAACATTGA 59.659 47.619 0.00 0.00 34.20 2.57
2937 4171 1.068895 TGGCCAGCTTTGTCAACATTG 59.931 47.619 0.00 0.00 0.00 2.82
2938 4172 1.412079 TGGCCAGCTTTGTCAACATT 58.588 45.000 0.00 0.00 0.00 2.71
2939 4173 1.412079 TTGGCCAGCTTTGTCAACAT 58.588 45.000 5.11 0.00 0.00 2.71
2940 4174 1.134848 GTTTGGCCAGCTTTGTCAACA 60.135 47.619 5.11 0.00 0.00 3.33
2941 4175 1.570813 GTTTGGCCAGCTTTGTCAAC 58.429 50.000 5.11 0.47 0.00 3.18
2942 4176 0.463620 GGTTTGGCCAGCTTTGTCAA 59.536 50.000 5.11 0.00 37.17 3.18
2943 4177 0.685785 TGGTTTGGCCAGCTTTGTCA 60.686 50.000 5.11 0.00 43.61 3.58
2944 4178 2.123409 TGGTTTGGCCAGCTTTGTC 58.877 52.632 5.11 0.00 43.61 3.18
2945 4179 4.371699 TGGTTTGGCCAGCTTTGT 57.628 50.000 5.11 0.00 43.61 2.83
2953 4187 1.588082 CAGCTGACATGGTTTGGCC 59.412 57.895 8.42 0.00 29.16 5.36
2954 4188 1.588082 CCAGCTGACATGGTTTGGC 59.412 57.895 17.39 0.00 32.85 4.52
2955 4189 1.180456 TGCCAGCTGACATGGTTTGG 61.180 55.000 17.39 0.00 40.17 3.28
2956 4190 0.038892 GTGCCAGCTGACATGGTTTG 60.039 55.000 17.39 0.00 40.17 2.93
2957 4191 0.467844 TGTGCCAGCTGACATGGTTT 60.468 50.000 17.39 0.00 40.17 3.27
2958 4192 1.151221 TGTGCCAGCTGACATGGTT 59.849 52.632 17.39 0.00 40.17 3.67
2959 4193 1.601759 GTGTGCCAGCTGACATGGT 60.602 57.895 17.39 0.00 40.17 3.55
2960 4194 2.338015 GGTGTGCCAGCTGACATGG 61.338 63.158 17.39 0.00 41.04 3.66
2961 4195 1.174078 TTGGTGTGCCAGCTGACATG 61.174 55.000 17.39 0.00 46.91 3.21
2962 4196 0.467844 TTTGGTGTGCCAGCTGACAT 60.468 50.000 17.39 0.00 46.91 3.06
2963 4197 0.467844 ATTTGGTGTGCCAGCTGACA 60.468 50.000 17.39 7.06 46.91 3.58
2964 4198 1.533625 TATTTGGTGTGCCAGCTGAC 58.466 50.000 17.39 3.38 46.91 3.51
2965 4199 2.093890 CATATTTGGTGTGCCAGCTGA 58.906 47.619 17.39 0.00 46.91 4.26
2966 4200 1.135527 CCATATTTGGTGTGCCAGCTG 59.864 52.381 6.78 6.78 46.91 4.24
2967 4201 1.477553 CCATATTTGGTGTGCCAGCT 58.522 50.000 6.06 0.00 46.91 4.24
2990 4224 9.104965 GCCACTGTTGTAGTTTATGTCATTATA 57.895 33.333 0.00 0.00 37.60 0.98
2991 4225 7.829211 AGCCACTGTTGTAGTTTATGTCATTAT 59.171 33.333 0.00 0.00 37.60 1.28
2992 4226 7.165485 AGCCACTGTTGTAGTTTATGTCATTA 58.835 34.615 0.00 0.00 37.60 1.90
2993 4227 6.003950 AGCCACTGTTGTAGTTTATGTCATT 58.996 36.000 0.00 0.00 37.60 2.57
2994 4228 5.560724 AGCCACTGTTGTAGTTTATGTCAT 58.439 37.500 0.00 0.00 37.60 3.06
2995 4229 4.968259 AGCCACTGTTGTAGTTTATGTCA 58.032 39.130 0.00 0.00 37.60 3.58
2996 4230 7.611213 ATTAGCCACTGTTGTAGTTTATGTC 57.389 36.000 0.00 0.00 37.60 3.06
2997 4231 8.319146 ACTATTAGCCACTGTTGTAGTTTATGT 58.681 33.333 0.00 0.00 37.60 2.29
2998 4232 8.718102 ACTATTAGCCACTGTTGTAGTTTATG 57.282 34.615 0.00 0.00 37.60 1.90
3066 4300 5.411053 CACCAAGAGACTCAATCTTTTCCTC 59.589 44.000 5.02 0.00 38.00 3.71
3079 4313 1.071385 CAAGTGCTCCACCAAGAGACT 59.929 52.381 0.00 0.00 35.82 3.24
3260 4494 4.537135 TCTCACTTGCTTTAACTCCGAT 57.463 40.909 0.00 0.00 0.00 4.18
3281 4515 2.564947 GCTCTCGACCCATCCTATTGAT 59.435 50.000 0.00 0.00 0.00 2.57
3305 4539 4.133078 CCAATAGCCTGCCTTCTTTAGAG 58.867 47.826 0.00 0.00 0.00 2.43
3701 4935 1.008938 ACCTCTACATCCAGGGAGCTT 59.991 52.381 0.00 0.00 33.57 3.74
3725 4959 0.671781 GCTCCTTCTTCGCAGCTCAA 60.672 55.000 0.00 0.00 0.00 3.02
4755 6004 5.786401 AAGAATATCAAATCGCTATCCGC 57.214 39.130 0.00 0.00 36.73 5.54
5403 7378 2.232941 GACTGAAACCCAGACCGTGATA 59.767 50.000 0.00 0.00 45.78 2.15
5442 7417 1.610522 CAGACTGAAACCCAGCCAAAG 59.389 52.381 0.00 0.00 46.81 2.77
5445 7420 1.071699 GTACAGACTGAAACCCAGCCA 59.928 52.381 10.08 0.00 46.81 4.75
5446 7421 1.071699 TGTACAGACTGAAACCCAGCC 59.928 52.381 10.08 0.00 46.81 4.85
5447 7422 2.037251 TCTGTACAGACTGAAACCCAGC 59.963 50.000 21.74 0.00 46.81 4.85
5449 7424 3.557054 GCATCTGTACAGACTGAAACCCA 60.557 47.826 27.41 1.71 40.75 4.51
5450 7425 3.003480 GCATCTGTACAGACTGAAACCC 58.997 50.000 27.41 9.87 40.75 4.11
5451 7426 3.929610 GAGCATCTGTACAGACTGAAACC 59.070 47.826 27.41 12.88 40.75 3.27
5452 7427 3.929610 GGAGCATCTGTACAGACTGAAAC 59.070 47.826 27.41 15.54 40.75 2.78
5453 7428 3.834813 AGGAGCATCTGTACAGACTGAAA 59.165 43.478 27.41 4.86 40.75 2.69
5454 7429 3.435275 AGGAGCATCTGTACAGACTGAA 58.565 45.455 27.41 5.65 40.75 3.02
5455 7430 3.093057 AGGAGCATCTGTACAGACTGA 57.907 47.619 27.41 6.35 40.75 3.41
5456 7431 3.446873 AGAAGGAGCATCTGTACAGACTG 59.553 47.826 27.41 23.69 40.75 3.51
5457 7432 3.699038 GAGAAGGAGCATCTGTACAGACT 59.301 47.826 27.41 20.21 40.75 3.24
5458 7433 3.181480 GGAGAAGGAGCATCTGTACAGAC 60.181 52.174 27.41 15.78 40.75 3.51
5459 7434 3.027412 GGAGAAGGAGCATCTGTACAGA 58.973 50.000 27.07 27.07 42.37 3.41
5460 7435 3.030291 AGGAGAAGGAGCATCTGTACAG 58.970 50.000 17.17 17.17 33.73 2.74
5461 7436 3.107402 AGGAGAAGGAGCATCTGTACA 57.893 47.619 0.00 0.00 33.73 2.90
5462 7437 4.479786 AAAGGAGAAGGAGCATCTGTAC 57.520 45.455 0.00 0.00 33.73 2.90
5463 7438 6.814954 ATTAAAGGAGAAGGAGCATCTGTA 57.185 37.500 0.00 0.00 33.73 2.74
5464 7439 5.707066 ATTAAAGGAGAAGGAGCATCTGT 57.293 39.130 0.00 0.00 33.73 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.