Multiple sequence alignment - TraesCS2D01G083000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G083000 chr2D 100.000 4337 0 0 1 4337 35802955 35807291 0.000000e+00 8010.0
1 TraesCS2D01G083000 chr2A 89.484 2501 154 57 263 2689 39006162 39008627 0.000000e+00 3061.0
2 TraesCS2D01G083000 chr2A 89.494 771 46 15 2703 3464 39008686 39009430 0.000000e+00 942.0
3 TraesCS2D01G083000 chr2A 91.123 383 34 0 3570 3952 39122175 39122557 1.790000e-143 520.0
4 TraesCS2D01G083000 chr2A 93.220 236 12 2 3344 3577 39009424 39009657 1.150000e-90 344.0
5 TraesCS2D01G083000 chr2A 84.127 189 25 2 860 1048 39125259 39125442 1.240000e-40 178.0
6 TraesCS2D01G083000 chr2A 90.722 97 5 1 3969 4065 39122792 39122884 4.550000e-25 126.0
7 TraesCS2D01G083000 chr2B 89.796 2450 143 44 315 2689 58999425 59001842 0.000000e+00 3040.0
8 TraesCS2D01G083000 chr2B 85.799 676 52 23 2703 3371 59001901 59002539 0.000000e+00 676.0
9 TraesCS2D01G083000 chr2B 88.806 268 25 4 51 314 166592112 166592378 1.500000e-84 324.0
10 TraesCS2D01G083000 chr2B 86.142 267 31 3 2313 2574 62175840 62176105 2.550000e-72 283.0
11 TraesCS2D01G083000 chr2B 89.941 169 15 2 3698 3865 59018987 59019154 2.630000e-52 217.0
12 TraesCS2D01G083000 chr2B 91.935 124 6 4 3693 3812 59003934 59004057 2.070000e-38 171.0
13 TraesCS2D01G083000 chr2B 83.478 115 10 6 3949 4063 59019518 59019623 9.930000e-17 99.0
14 TraesCS2D01G083000 chr2B 91.667 60 5 0 1890 1949 554728751 554728692 2.780000e-12 84.2
15 TraesCS2D01G083000 chr2B 100.000 33 0 0 2631 2663 59001868 59001900 1.300000e-05 62.1
16 TraesCS2D01G083000 chr4B 89.344 488 42 7 3194 3675 650470295 650470778 4.800000e-169 604.0
17 TraesCS2D01G083000 chr4B 89.139 488 42 8 3194 3675 650509480 650509962 8.030000e-167 597.0
18 TraesCS2D01G083000 chr7B 88.957 489 43 7 3194 3675 646949762 646950246 1.040000e-165 593.0
19 TraesCS2D01G083000 chr7B 87.409 413 42 6 3269 3675 442119757 442120165 2.360000e-127 466.0
20 TraesCS2D01G083000 chr7B 89.734 263 23 3 56 314 598296146 598296408 2.500000e-87 333.0
21 TraesCS2D01G083000 chr3B 87.526 489 49 7 3194 3675 45249715 45249232 4.900000e-154 555.0
22 TraesCS2D01G083000 chr3B 89.655 261 23 3 57 313 175672256 175671996 3.230000e-86 329.0
23 TraesCS2D01G083000 chr3B 89.015 264 26 3 56 316 660482417 660482154 1.500000e-84 324.0
24 TraesCS2D01G083000 chr1D 97.436 273 7 0 4065 4337 413299216 413299488 2.360000e-127 466.0
25 TraesCS2D01G083000 chr1D 97.059 272 7 1 4066 4337 470867125 470867395 1.420000e-124 457.0
26 TraesCS2D01G083000 chr3D 96.113 283 11 0 4055 4337 568111377 568111095 3.060000e-126 462.0
27 TraesCS2D01G083000 chr3D 96.715 274 9 0 4064 4337 57172162 57171889 1.420000e-124 457.0
28 TraesCS2D01G083000 chr3D 96.715 274 9 0 4064 4337 61652517 61652790 1.420000e-124 457.0
29 TraesCS2D01G083000 chr3D 96.703 273 9 0 4065 4337 594756702 594756974 5.110000e-124 455.0
30 TraesCS2D01G083000 chr4D 97.059 272 8 0 4066 4337 143564857 143565128 3.950000e-125 459.0
31 TraesCS2D01G083000 chr7D 95.775 284 11 1 4055 4337 398849770 398849487 1.420000e-124 457.0
32 TraesCS2D01G083000 chr7D 96.715 274 8 1 4064 4337 32538985 32538713 5.110000e-124 455.0
33 TraesCS2D01G083000 chr7D 88.764 267 26 3 52 314 409703792 409704058 1.500000e-84 324.0
34 TraesCS2D01G083000 chr4A 89.888 267 21 5 56 317 483944630 483944895 5.370000e-89 339.0
35 TraesCS2D01G083000 chr5B 89.655 261 23 3 57 313 276947044 276947304 3.230000e-86 329.0
36 TraesCS2D01G083000 chr5B 75.269 186 42 4 311 493 308805417 308805601 7.730000e-13 86.1
37 TraesCS2D01G083000 chr5A 89.434 265 22 5 56 314 34841904 34842168 3.230000e-86 329.0
38 TraesCS2D01G083000 chr5D 89.313 262 24 3 57 314 64191504 64191243 4.180000e-85 326.0
39 TraesCS2D01G083000 chr1B 80.137 146 23 6 353 494 105305860 105306003 2.130000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G083000 chr2D 35802955 35807291 4336 False 8010.000000 8010 100.000000 1 4337 1 chr2D.!!$F1 4336
1 TraesCS2D01G083000 chr2A 39006162 39009657 3495 False 1449.000000 3061 90.732667 263 3577 3 chr2A.!!$F1 3314
2 TraesCS2D01G083000 chr2A 39122175 39125442 3267 False 274.666667 520 88.657333 860 4065 3 chr2A.!!$F2 3205
3 TraesCS2D01G083000 chr2B 58999425 59004057 4632 False 987.275000 3040 91.882500 315 3812 4 chr2B.!!$F3 3497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 673 0.038892 TTCGACACTAGTGTTCGGCC 60.039 55.0 30.01 18.94 45.05 6.13 F
757 815 0.536687 CCGACTCTACTCCGGCCATA 60.537 60.0 2.24 0.00 36.62 2.74 F
2718 2885 0.877071 CAAGAATGCCTTGCTGACGT 59.123 50.0 0.00 0.00 44.90 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2332 0.855349 GCATTGGTCGCAGTAGATCG 59.145 55.0 0.0 0.0 0.00 3.69 R
2724 2891 0.107508 CCGATCTGCACCACATTCCT 60.108 55.0 0.0 0.0 0.00 3.36 R
4282 5904 0.031721 GTCGTGGACGGTTGACTCTT 59.968 55.0 0.0 0.0 40.29 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.592308 GACCCATGTCCCCTGAGC 59.408 66.667 0.00 0.00 35.34 4.26
18 19 3.017581 ACCCATGTCCCCTGAGCC 61.018 66.667 0.00 0.00 0.00 4.70
19 20 4.181010 CCCATGTCCCCTGAGCCG 62.181 72.222 0.00 0.00 0.00 5.52
20 21 4.864334 CCATGTCCCCTGAGCCGC 62.864 72.222 0.00 0.00 0.00 6.53
27 28 3.842923 CCCTGAGCCGCGACTGAT 61.843 66.667 8.23 0.00 0.00 2.90
28 29 2.490148 CCCTGAGCCGCGACTGATA 61.490 63.158 8.23 0.00 0.00 2.15
29 30 1.007964 CCTGAGCCGCGACTGATAG 60.008 63.158 8.23 0.00 0.00 2.08
30 31 1.448119 CCTGAGCCGCGACTGATAGA 61.448 60.000 8.23 0.00 0.00 1.98
31 32 0.040514 CTGAGCCGCGACTGATAGAG 60.041 60.000 8.23 0.00 0.00 2.43
32 33 1.371145 GAGCCGCGACTGATAGAGC 60.371 63.158 8.23 0.00 0.00 4.09
33 34 2.064723 GAGCCGCGACTGATAGAGCA 62.065 60.000 8.23 0.00 0.00 4.26
34 35 1.659954 GCCGCGACTGATAGAGCAG 60.660 63.158 8.23 0.00 41.63 4.24
48 49 8.147058 ACTGATAGAGCAGTACTGAATATTTGG 58.853 37.037 27.08 11.82 46.67 3.28
49 50 8.023021 TGATAGAGCAGTACTGAATATTTGGT 57.977 34.615 27.08 2.76 0.00 3.67
50 51 9.143155 TGATAGAGCAGTACTGAATATTTGGTA 57.857 33.333 27.08 4.45 0.00 3.25
51 52 9.413048 GATAGAGCAGTACTGAATATTTGGTAC 57.587 37.037 27.08 17.03 35.97 3.34
52 53 7.182817 AGAGCAGTACTGAATATTTGGTACA 57.817 36.000 27.08 4.80 37.55 2.90
67 68 4.341863 TGGTACAAGGTACTCCCTATGT 57.658 45.455 6.50 0.00 45.47 2.29
68 69 4.691238 TGGTACAAGGTACTCCCTATGTT 58.309 43.478 6.50 0.00 45.47 2.71
69 70 5.095809 TGGTACAAGGTACTCCCTATGTTT 58.904 41.667 6.50 0.00 45.47 2.83
70 71 5.188359 TGGTACAAGGTACTCCCTATGTTTC 59.812 44.000 6.50 0.00 45.47 2.78
71 72 5.424573 GGTACAAGGTACTCCCTATGTTTCT 59.575 44.000 6.50 0.00 45.47 2.52
72 73 6.070366 GGTACAAGGTACTCCCTATGTTTCTT 60.070 42.308 6.50 0.00 45.47 2.52
73 74 6.449830 ACAAGGTACTCCCTATGTTTCTTT 57.550 37.500 0.00 0.00 45.47 2.52
74 75 6.849151 ACAAGGTACTCCCTATGTTTCTTTT 58.151 36.000 0.00 0.00 45.47 2.27
75 76 7.295340 ACAAGGTACTCCCTATGTTTCTTTTT 58.705 34.615 0.00 0.00 45.47 1.94
76 77 8.442374 ACAAGGTACTCCCTATGTTTCTTTTTA 58.558 33.333 0.00 0.00 45.47 1.52
77 78 8.947115 CAAGGTACTCCCTATGTTTCTTTTTAG 58.053 37.037 0.00 0.00 45.47 1.85
78 79 8.215954 AGGTACTCCCTATGTTTCTTTTTAGT 57.784 34.615 0.00 0.00 43.87 2.24
79 80 8.319881 AGGTACTCCCTATGTTTCTTTTTAGTC 58.680 37.037 0.00 0.00 43.87 2.59
80 81 7.277319 GGTACTCCCTATGTTTCTTTTTAGTCG 59.723 40.741 0.00 0.00 0.00 4.18
81 82 6.171213 ACTCCCTATGTTTCTTTTTAGTCGG 58.829 40.000 0.00 0.00 0.00 4.79
82 83 4.939439 TCCCTATGTTTCTTTTTAGTCGGC 59.061 41.667 0.00 0.00 0.00 5.54
83 84 4.698304 CCCTATGTTTCTTTTTAGTCGGCA 59.302 41.667 0.00 0.00 0.00 5.69
84 85 5.357032 CCCTATGTTTCTTTTTAGTCGGCAT 59.643 40.000 0.00 0.00 0.00 4.40
85 86 6.540914 CCCTATGTTTCTTTTTAGTCGGCATA 59.459 38.462 0.00 0.00 0.00 3.14
86 87 7.407337 CCTATGTTTCTTTTTAGTCGGCATAC 58.593 38.462 0.00 0.00 0.00 2.39
87 88 6.811253 ATGTTTCTTTTTAGTCGGCATACA 57.189 33.333 0.00 0.00 0.00 2.29
88 89 6.621316 TGTTTCTTTTTAGTCGGCATACAA 57.379 33.333 0.00 0.00 0.00 2.41
89 90 7.028926 TGTTTCTTTTTAGTCGGCATACAAA 57.971 32.000 0.00 0.00 0.00 2.83
90 91 7.481642 TGTTTCTTTTTAGTCGGCATACAAAA 58.518 30.769 0.00 0.00 0.00 2.44
91 92 8.138712 TGTTTCTTTTTAGTCGGCATACAAAAT 58.861 29.630 0.00 0.00 0.00 1.82
92 93 8.974408 GTTTCTTTTTAGTCGGCATACAAAATT 58.026 29.630 0.00 0.00 0.00 1.82
93 94 9.535878 TTTCTTTTTAGTCGGCATACAAAATTT 57.464 25.926 0.00 0.00 0.00 1.82
94 95 8.514136 TCTTTTTAGTCGGCATACAAAATTTG 57.486 30.769 3.89 3.89 0.00 2.32
95 96 7.596995 TCTTTTTAGTCGGCATACAAAATTTGG 59.403 33.333 10.71 0.00 34.12 3.28
96 97 5.968528 TTAGTCGGCATACAAAATTTGGT 57.031 34.783 10.71 3.18 34.12 3.67
97 98 4.434713 AGTCGGCATACAAAATTTGGTC 57.565 40.909 10.71 0.00 34.12 4.02
98 99 3.823873 AGTCGGCATACAAAATTTGGTCA 59.176 39.130 10.71 0.00 34.12 4.02
99 100 4.279671 AGTCGGCATACAAAATTTGGTCAA 59.720 37.500 10.71 0.00 34.12 3.18
100 101 4.985409 GTCGGCATACAAAATTTGGTCAAA 59.015 37.500 10.71 0.00 34.12 2.69
101 102 5.118510 GTCGGCATACAAAATTTGGTCAAAG 59.881 40.000 10.71 0.00 33.32 2.77
102 103 4.987912 CGGCATACAAAATTTGGTCAAAGT 59.012 37.500 10.71 0.00 33.32 2.66
103 104 5.118510 CGGCATACAAAATTTGGTCAAAGTC 59.881 40.000 10.71 0.00 33.32 3.01
104 105 5.988561 GGCATACAAAATTTGGTCAAAGTCA 59.011 36.000 10.71 0.00 33.32 3.41
105 106 6.481644 GGCATACAAAATTTGGTCAAAGTCAA 59.518 34.615 10.71 0.00 33.32 3.18
106 107 7.011857 GGCATACAAAATTTGGTCAAAGTCAAA 59.988 33.333 10.71 0.00 37.29 2.69
107 108 7.850492 GCATACAAAATTTGGTCAAAGTCAAAC 59.150 33.333 10.71 0.00 35.97 2.93
108 109 9.097257 CATACAAAATTTGGTCAAAGTCAAACT 57.903 29.630 10.71 0.00 35.97 2.66
109 110 7.977789 ACAAAATTTGGTCAAAGTCAAACTT 57.022 28.000 10.71 0.00 35.85 2.66
110 111 8.389779 ACAAAATTTGGTCAAAGTCAAACTTT 57.610 26.923 10.71 0.00 41.03 2.66
121 122 6.746745 AAAGTCAAACTTTGTTAACCTCGA 57.253 33.333 2.48 0.00 45.83 4.04
122 123 5.729974 AGTCAAACTTTGTTAACCTCGAC 57.270 39.130 2.48 0.96 0.00 4.20
123 124 5.425630 AGTCAAACTTTGTTAACCTCGACT 58.574 37.500 2.48 3.14 0.00 4.18
124 125 6.576185 AGTCAAACTTTGTTAACCTCGACTA 58.424 36.000 2.48 0.00 0.00 2.59
125 126 7.043565 AGTCAAACTTTGTTAACCTCGACTAA 58.956 34.615 2.48 0.00 0.00 2.24
126 127 7.224167 AGTCAAACTTTGTTAACCTCGACTAAG 59.776 37.037 2.48 0.00 35.63 2.18
127 128 7.010830 GTCAAACTTTGTTAACCTCGACTAAGT 59.989 37.037 2.48 0.00 41.33 2.24
128 129 7.550196 TCAAACTTTGTTAACCTCGACTAAGTT 59.450 33.333 2.48 9.21 46.22 2.66
129 130 7.854557 AACTTTGTTAACCTCGACTAAGTTT 57.145 32.000 2.48 0.00 43.85 2.66
130 131 8.947055 AACTTTGTTAACCTCGACTAAGTTTA 57.053 30.769 2.48 0.00 43.85 2.01
131 132 9.551734 AACTTTGTTAACCTCGACTAAGTTTAT 57.448 29.630 2.48 0.00 43.85 1.40
275 276 6.569780 ACATTGTAAAGTTTGACTTTGACCC 58.430 36.000 14.50 3.14 46.83 4.46
277 278 6.591750 TTGTAAAGTTTGACTTTGACCCAA 57.408 33.333 14.50 9.59 46.83 4.12
279 280 7.176589 TGTAAAGTTTGACTTTGACCCAATT 57.823 32.000 14.50 0.00 46.83 2.32
287 288 8.655970 GTTTGACTTTGACCCAATTTTATATGC 58.344 33.333 0.00 0.00 0.00 3.14
291 292 7.547227 ACTTTGACCCAATTTTATATGCAGAC 58.453 34.615 0.00 0.00 0.00 3.51
304 305 9.834628 TTTTATATGCAGACTAAAAAGAAACGG 57.165 29.630 0.00 0.00 0.00 4.44
313 314 6.212993 AGACTAAAAAGAAACGGAGGGAGTAT 59.787 38.462 0.00 0.00 0.00 2.12
349 350 6.877236 ACTTGGATTCAAACTGTGTGAAAAT 58.123 32.000 16.76 2.13 38.44 1.82
351 352 8.641541 ACTTGGATTCAAACTGTGTGAAAATAT 58.358 29.630 16.76 1.04 38.44 1.28
354 355 6.311200 GGATTCAAACTGTGTGAAAATATGGC 59.689 38.462 16.76 2.32 38.44 4.40
371 372 1.204704 TGGCATGAAGTCGTGTCCTAG 59.795 52.381 0.00 0.00 36.69 3.02
376 377 4.036971 GCATGAAGTCGTGTCCTAGTAGAT 59.963 45.833 0.00 0.00 35.38 1.98
387 389 6.564312 CGTGTCCTAGTAGATCACTTGTATCG 60.564 46.154 16.61 4.71 38.80 2.92
389 391 6.260271 TGTCCTAGTAGATCACTTGTATCGTG 59.740 42.308 0.00 0.00 38.80 4.35
390 392 5.763698 TCCTAGTAGATCACTTGTATCGTGG 59.236 44.000 0.00 0.00 38.80 4.94
396 398 0.462047 CACTTGTATCGTGGCCCTCC 60.462 60.000 0.00 0.00 0.00 4.30
397 399 1.146263 CTTGTATCGTGGCCCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
416 418 5.129485 CCTCCCATATAATGCGAAGGTAGAT 59.871 44.000 0.00 0.00 0.00 1.98
420 422 6.408548 CCCATATAATGCGAAGGTAGATCCAT 60.409 42.308 0.00 0.00 39.02 3.41
552 576 2.564771 ACATATCTTGGTGTCATGCCG 58.435 47.619 0.00 0.00 0.00 5.69
554 578 0.541392 TATCTTGGTGTCATGCCGCT 59.459 50.000 0.00 0.00 0.00 5.52
555 579 0.745845 ATCTTGGTGTCATGCCGCTC 60.746 55.000 0.00 0.00 0.00 5.03
556 580 1.672030 CTTGGTGTCATGCCGCTCA 60.672 57.895 0.00 0.00 0.00 4.26
557 581 1.642037 CTTGGTGTCATGCCGCTCAG 61.642 60.000 0.00 0.00 0.00 3.35
558 582 3.503363 GGTGTCATGCCGCTCAGC 61.503 66.667 0.00 0.00 0.00 4.26
559 583 3.503363 GTGTCATGCCGCTCAGCC 61.503 66.667 0.00 0.00 0.00 4.85
560 584 3.709633 TGTCATGCCGCTCAGCCT 61.710 61.111 0.00 0.00 0.00 4.58
561 585 2.437359 GTCATGCCGCTCAGCCTT 60.437 61.111 0.00 0.00 0.00 4.35
577 601 1.197721 GCCTTTGTGATTGTCTGGTCG 59.802 52.381 0.00 0.00 0.00 4.79
601 626 2.320745 TAGATGACTGCGTACCTCGA 57.679 50.000 0.00 0.00 42.86 4.04
602 627 1.681538 AGATGACTGCGTACCTCGAT 58.318 50.000 0.00 0.00 42.86 3.59
604 629 3.211865 AGATGACTGCGTACCTCGATTA 58.788 45.455 0.00 0.00 42.86 1.75
605 630 3.630769 AGATGACTGCGTACCTCGATTAA 59.369 43.478 0.00 0.00 42.86 1.40
613 638 7.879070 ACTGCGTACCTCGATTAATAATTCTA 58.121 34.615 0.00 0.00 42.86 2.10
617 642 8.971321 GCGTACCTCGATTAATAATTCTAACAA 58.029 33.333 0.00 0.00 42.86 2.83
641 666 9.741168 CAAATATTAACACTTTCGACACTAGTG 57.259 33.333 21.44 21.44 43.72 2.74
646 671 2.724690 CACTTTCGACACTAGTGTTCGG 59.275 50.000 30.01 22.64 45.05 4.30
647 672 1.719780 CTTTCGACACTAGTGTTCGGC 59.280 52.381 30.01 19.22 45.05 5.54
648 673 0.038892 TTCGACACTAGTGTTCGGCC 60.039 55.000 30.01 18.94 45.05 6.13
649 674 1.445582 CGACACTAGTGTTCGGCCC 60.446 63.158 28.49 14.07 45.05 5.80
650 675 1.445582 GACACTAGTGTTCGGCCCG 60.446 63.158 28.49 0.00 45.05 6.13
651 676 2.125673 CACTAGTGTTCGGCCCGG 60.126 66.667 15.06 0.00 0.00 5.73
652 677 4.078516 ACTAGTGTTCGGCCCGGC 62.079 66.667 1.90 0.00 0.00 6.13
653 678 4.832608 CTAGTGTTCGGCCCGGCC 62.833 72.222 19.64 19.64 46.75 6.13
669 718 2.685366 CCCCATGATGGCCACACT 59.315 61.111 8.16 0.00 35.79 3.55
757 815 0.536687 CCGACTCTACTCCGGCCATA 60.537 60.000 2.24 0.00 36.62 2.74
791 850 3.806316 TCCGCGAGATTTTGTTTTCTC 57.194 42.857 8.23 0.00 35.97 2.87
794 853 3.908382 CCGCGAGATTTTGTTTTCTCAAG 59.092 43.478 8.23 0.00 38.63 3.02
845 906 1.862147 CTTACGTGTCCGACTCGCG 60.862 63.158 19.94 13.77 38.50 5.87
857 918 3.423154 CTCGCGCCTGGTGTTTCC 61.423 66.667 9.31 0.00 0.00 3.13
1153 1230 3.461773 GCCAGGAGCTCCGCTACA 61.462 66.667 26.95 0.00 42.99 2.74
1216 1293 1.809547 GCAAGAAGTTCCAGCTCTTCC 59.190 52.381 8.79 0.00 40.34 3.46
1539 1643 1.674651 GGCGTCTCCCCAAAGTTCC 60.675 63.158 0.00 0.00 0.00 3.62
1620 1736 1.344942 CGAAAGACGGAGACAAGGCG 61.345 60.000 0.00 0.00 38.46 5.52
1721 1840 2.172483 ACGGCCAAGCTGTCCTACAG 62.172 60.000 2.24 2.65 45.94 2.74
1728 1847 1.805945 GCTGTCCTACAGGCGAACG 60.806 63.158 8.99 0.00 46.01 3.95
2402 2524 3.334604 CCAGAAGGGCCATGGCTA 58.665 61.111 34.70 0.00 41.60 3.93
2663 2785 9.699703 GTCTTCAACAGAGAGTAAGTAAATCTT 57.300 33.333 0.00 0.00 34.56 2.40
2664 2786 9.915629 TCTTCAACAGAGAGTAAGTAAATCTTC 57.084 33.333 0.00 0.00 37.56 2.87
2666 2788 9.698309 TTCAACAGAGAGTAAGTAAATCTTCAG 57.302 33.333 0.00 0.00 37.56 3.02
2667 2789 7.815068 TCAACAGAGAGTAAGTAAATCTTCAGC 59.185 37.037 0.00 0.00 37.56 4.26
2669 2791 7.543756 ACAGAGAGTAAGTAAATCTTCAGCTC 58.456 38.462 0.00 0.00 37.56 4.09
2670 2792 7.396055 ACAGAGAGTAAGTAAATCTTCAGCTCT 59.604 37.037 0.00 0.00 39.78 4.09
2673 2795 8.996024 AGAGTAAGTAAATCTTCAGCTCTTTC 57.004 34.615 0.00 0.00 36.98 2.62
2682 2804 5.219343 TCTTCAGCTCTTTCTCAACATCA 57.781 39.130 0.00 0.00 0.00 3.07
2689 2811 5.182760 AGCTCTTTCTCAACATCACATTTCC 59.817 40.000 0.00 0.00 0.00 3.13
2691 2813 6.622462 GCTCTTTCTCAACATCACATTTCCTC 60.622 42.308 0.00 0.00 0.00 3.71
2692 2814 5.707298 TCTTTCTCAACATCACATTTCCTCC 59.293 40.000 0.00 0.00 0.00 4.30
2694 2816 2.679837 CTCAACATCACATTTCCTCCGG 59.320 50.000 0.00 0.00 0.00 5.14
2707 2874 1.032114 CCTCCGGGGAACAAGAATGC 61.032 60.000 0.37 0.00 37.23 3.56
2717 2884 3.689224 CAAGAATGCCTTGCTGACG 57.311 52.632 0.00 0.00 44.90 4.35
2718 2885 0.877071 CAAGAATGCCTTGCTGACGT 59.123 50.000 0.00 0.00 44.90 4.34
2719 2886 0.877071 AAGAATGCCTTGCTGACGTG 59.123 50.000 0.00 0.00 32.92 4.49
2720 2887 1.154150 GAATGCCTTGCTGACGTGC 60.154 57.895 0.00 0.00 0.00 5.34
2721 2888 1.580845 GAATGCCTTGCTGACGTGCT 61.581 55.000 0.00 0.00 0.00 4.40
2723 2890 1.859427 ATGCCTTGCTGACGTGCTTG 61.859 55.000 0.00 0.00 0.00 4.01
2724 2891 2.253758 GCCTTGCTGACGTGCTTGA 61.254 57.895 0.00 0.00 0.00 3.02
2726 2893 1.572085 CCTTGCTGACGTGCTTGAGG 61.572 60.000 0.00 0.00 0.00 3.86
2727 2894 0.601046 CTTGCTGACGTGCTTGAGGA 60.601 55.000 0.00 0.00 0.00 3.71
2728 2895 0.179059 TTGCTGACGTGCTTGAGGAA 60.179 50.000 0.00 0.00 0.00 3.36
2729 2896 0.035317 TGCTGACGTGCTTGAGGAAT 59.965 50.000 0.00 0.00 0.00 3.01
2730 2897 0.445436 GCTGACGTGCTTGAGGAATG 59.555 55.000 0.00 0.00 0.00 2.67
2732 2899 1.462283 CTGACGTGCTTGAGGAATGTG 59.538 52.381 0.00 0.00 0.00 3.21
2781 2948 1.143183 CCGGGGATTCTACGTGGTG 59.857 63.158 0.00 0.00 0.00 4.17
2830 2997 2.603473 TGGGCACGCTCAGGTACT 60.603 61.111 0.00 0.00 43.88 2.73
2831 2998 2.214216 TGGGCACGCTCAGGTACTT 61.214 57.895 0.00 0.00 34.60 2.24
2832 2999 1.741770 GGGCACGCTCAGGTACTTG 60.742 63.158 0.00 0.00 34.60 3.16
2833 3000 2.391389 GGCACGCTCAGGTACTTGC 61.391 63.158 0.00 0.00 34.60 4.01
2834 3001 1.374758 GCACGCTCAGGTACTTGCT 60.375 57.895 0.00 0.00 34.60 3.91
2839 3006 0.107945 GCTCAGGTACTTGCTCCCAG 60.108 60.000 0.00 0.00 34.60 4.45
2852 3019 1.964552 CTCCCAGCACTTGATCATCC 58.035 55.000 0.00 0.00 0.00 3.51
2861 3028 4.224594 AGCACTTGATCATCCTCTTCTCAA 59.775 41.667 0.00 0.00 0.00 3.02
2862 3029 4.332268 GCACTTGATCATCCTCTTCTCAAC 59.668 45.833 0.00 0.00 0.00 3.18
2864 3031 6.171921 CACTTGATCATCCTCTTCTCAACTT 58.828 40.000 0.00 0.00 0.00 2.66
2867 3034 6.219417 TGATCATCCTCTTCTCAACTTCTC 57.781 41.667 0.00 0.00 0.00 2.87
2868 3035 5.718607 TGATCATCCTCTTCTCAACTTCTCA 59.281 40.000 0.00 0.00 0.00 3.27
2870 3037 5.975282 TCATCCTCTTCTCAACTTCTCATG 58.025 41.667 0.00 0.00 0.00 3.07
2874 3041 5.423290 TCCTCTTCTCAACTTCTCATGCATA 59.577 40.000 0.00 0.00 0.00 3.14
2875 3042 6.099413 TCCTCTTCTCAACTTCTCATGCATAT 59.901 38.462 0.00 0.00 0.00 1.78
2877 3044 8.095792 CCTCTTCTCAACTTCTCATGCATATAT 58.904 37.037 0.00 0.00 0.00 0.86
2878 3045 8.828688 TCTTCTCAACTTCTCATGCATATATG 57.171 34.615 8.45 8.45 0.00 1.78
2893 3060 4.645535 CATATATGCAGTGCCTGGTTACT 58.354 43.478 13.72 0.00 31.21 2.24
2897 3064 1.953686 TGCAGTGCCTGGTTACTTTTC 59.046 47.619 13.72 0.00 31.21 2.29
2898 3065 2.230660 GCAGTGCCTGGTTACTTTTCT 58.769 47.619 2.85 0.00 31.21 2.52
2915 3082 3.648339 TTCTCCTTGCAAATGCTGAAC 57.352 42.857 0.00 0.00 42.66 3.18
2917 3084 2.294233 TCTCCTTGCAAATGCTGAACAC 59.706 45.455 0.00 0.00 42.66 3.32
2918 3085 1.340889 TCCTTGCAAATGCTGAACACC 59.659 47.619 0.00 0.00 42.66 4.16
2924 3091 2.991190 GCAAATGCTGAACACCAATCTG 59.009 45.455 0.00 0.00 38.21 2.90
2927 3095 0.178995 TGCTGAACACCAATCTGCCA 60.179 50.000 0.00 0.00 39.99 4.92
2931 3099 2.161855 TGAACACCAATCTGCCATGTC 58.838 47.619 0.00 0.00 0.00 3.06
3017 3185 2.589540 CAAGGGATGTGCCGCCTA 59.410 61.111 0.00 0.00 37.63 3.93
3047 3215 3.064931 CCAACTGGAAAAGGTACGTCTC 58.935 50.000 0.00 0.00 37.39 3.36
3051 3219 2.737252 CTGGAAAAGGTACGTCTCAAGC 59.263 50.000 0.00 0.00 0.00 4.01
3123 3294 8.461222 TGGTCAGAGCTAAACATTTCATATTTG 58.539 33.333 0.38 0.00 0.00 2.32
3369 3546 9.243637 CTGCTACTATGTAGAAATCAAGAGTTC 57.756 37.037 8.71 2.28 35.82 3.01
3371 3548 9.587772 GCTACTATGTAGAAATCAAGAGTTCAA 57.412 33.333 12.10 0.00 37.82 2.69
3455 3632 4.581868 TGGCTGTACATTAGTTTGGTACC 58.418 43.478 4.43 4.43 37.24 3.34
3464 3641 4.959560 TTAGTTTGGTACCACTGCTACA 57.040 40.909 16.04 0.00 0.00 2.74
3465 3642 3.121738 AGTTTGGTACCACTGCTACAC 57.878 47.619 16.04 3.07 0.00 2.90
3491 3782 9.261180 CGTATGATGTAGGATGTAAGTGAAAAT 57.739 33.333 0.00 0.00 0.00 1.82
3536 3827 4.141367 TGTGACTGGTGGAGTAATTTGGAA 60.141 41.667 0.00 0.00 33.83 3.53
3632 3927 5.510520 CCAGCCCAGTAAACAAAAGCAATTA 60.511 40.000 0.00 0.00 0.00 1.40
3633 3928 5.634859 CAGCCCAGTAAACAAAAGCAATTAG 59.365 40.000 0.00 0.00 0.00 1.73
3647 3942 9.288576 CAAAAGCAATTAGGTCCTGATGATATA 57.711 33.333 0.00 0.00 0.00 0.86
3650 3945 8.155620 AGCAATTAGGTCCTGATGATATACAT 57.844 34.615 0.00 0.00 42.47 2.29
3652 3947 9.539825 GCAATTAGGTCCTGATGATATACATAG 57.460 37.037 0.00 0.00 39.56 2.23
3657 3952 8.907829 AGGTCCTGATGATATACATAGACATT 57.092 34.615 0.00 0.00 39.56 2.71
3715 5115 4.274147 ACTCGAGTCATCCTCATGTAAGT 58.726 43.478 13.58 0.00 40.48 2.24
3771 5175 5.944007 GCTCAGGTTAAGGATCTTTGGTTTA 59.056 40.000 0.00 0.00 0.00 2.01
3840 5244 2.851824 GACTTGCAAAACAAAGGACACG 59.148 45.455 0.00 0.00 37.96 4.49
3885 5289 8.716909 ACAAGGACACAAATTTTAAAACAGTTG 58.283 29.630 1.97 10.29 0.00 3.16
3887 5291 8.702163 AGGACACAAATTTTAAAACAGTTGAG 57.298 30.769 19.79 16.07 0.00 3.02
3916 5320 1.961277 CAGGTTTGCGCCTCGAGTT 60.961 57.895 12.31 0.00 36.58 3.01
3922 5326 0.531974 TTGCGCCTCGAGTTCAAACT 60.532 50.000 12.31 0.00 43.16 2.66
3939 5343 6.647212 TCAAACTTATGCATGTAGACTTCG 57.353 37.500 10.16 0.00 0.00 3.79
3946 5350 4.371855 TGCATGTAGACTTCGTAGAAGG 57.628 45.455 13.48 0.00 45.90 3.46
3952 5356 2.457598 AGACTTCGTAGAAGGGCATGA 58.542 47.619 13.48 0.00 45.90 3.07
3953 5357 2.166664 AGACTTCGTAGAAGGGCATGAC 59.833 50.000 13.48 0.00 45.90 3.06
3954 5358 2.166664 GACTTCGTAGAAGGGCATGACT 59.833 50.000 13.48 0.00 45.90 3.41
3955 5359 2.567615 ACTTCGTAGAAGGGCATGACTT 59.432 45.455 13.48 0.00 45.90 3.01
3957 5361 3.247006 TCGTAGAAGGGCATGACTTTC 57.753 47.619 15.40 15.40 0.00 2.62
3960 5364 3.132289 CGTAGAAGGGCATGACTTTCCTA 59.868 47.826 19.14 8.74 0.00 2.94
3963 5367 3.117738 AGAAGGGCATGACTTTCCTATGG 60.118 47.826 19.14 0.00 0.00 2.74
3964 5368 2.208872 AGGGCATGACTTTCCTATGGT 58.791 47.619 0.00 0.00 0.00 3.55
3965 5369 2.092212 AGGGCATGACTTTCCTATGGTG 60.092 50.000 0.00 0.00 0.00 4.17
3966 5370 2.357154 GGGCATGACTTTCCTATGGTGT 60.357 50.000 0.00 0.00 0.00 4.16
3967 5371 3.118038 GGGCATGACTTTCCTATGGTGTA 60.118 47.826 0.00 0.00 0.00 2.90
4020 5642 1.810031 CGGAAGAAAGGACAGTGCACA 60.810 52.381 21.04 0.00 0.00 4.57
4034 5656 3.691118 CAGTGCACATATGTGGCTACTTT 59.309 43.478 31.63 9.23 45.72 2.66
4035 5657 4.156556 CAGTGCACATATGTGGCTACTTTT 59.843 41.667 31.63 10.50 45.72 2.27
4036 5658 5.353956 CAGTGCACATATGTGGCTACTTTTA 59.646 40.000 31.63 8.48 45.72 1.52
4037 5659 5.943416 AGTGCACATATGTGGCTACTTTTAA 59.057 36.000 31.63 7.89 45.72 1.52
4038 5660 6.603201 AGTGCACATATGTGGCTACTTTTAAT 59.397 34.615 31.63 7.90 45.72 1.40
4052 5674 7.433425 GGCTACTTTTAATTGCAGATCATGAAC 59.567 37.037 0.00 0.00 0.00 3.18
4065 5687 5.990386 CAGATCATGAACACTCATCCTTAGG 59.010 44.000 0.00 0.00 40.49 2.69
4067 5689 3.455910 TCATGAACACTCATCCTTAGGGG 59.544 47.826 0.00 0.00 40.49 4.79
4071 5693 1.992557 ACACTCATCCTTAGGGGCAAA 59.007 47.619 0.00 0.00 34.39 3.68
4073 5695 3.785887 ACACTCATCCTTAGGGGCAAATA 59.214 43.478 0.00 0.00 34.39 1.40
4074 5696 4.141390 ACACTCATCCTTAGGGGCAAATAG 60.141 45.833 0.00 0.00 34.39 1.73
4075 5697 3.181439 ACTCATCCTTAGGGGCAAATAGC 60.181 47.826 0.00 0.00 44.65 2.97
4076 5698 3.056080 TCATCCTTAGGGGCAAATAGCT 58.944 45.455 0.00 0.00 44.79 3.32
4077 5699 3.073062 TCATCCTTAGGGGCAAATAGCTC 59.927 47.826 0.00 0.00 45.58 4.09
4083 5705 2.044452 GGGCAAATAGCTCCCATGC 58.956 57.895 2.53 4.13 44.79 4.06
4084 5706 1.656441 GGCAAATAGCTCCCATGCG 59.344 57.895 0.00 0.00 44.79 4.73
4085 5707 0.819259 GGCAAATAGCTCCCATGCGA 60.819 55.000 0.00 0.00 44.79 5.10
4086 5708 0.308993 GCAAATAGCTCCCATGCGAC 59.691 55.000 0.00 0.00 41.15 5.19
4088 5710 2.224606 CAAATAGCTCCCATGCGACAT 58.775 47.619 0.00 0.00 38.13 3.06
4090 5712 1.346062 ATAGCTCCCATGCGACATCT 58.654 50.000 0.00 0.00 38.13 2.90
4091 5713 1.123077 TAGCTCCCATGCGACATCTT 58.877 50.000 0.00 0.00 38.13 2.40
4092 5714 0.254178 AGCTCCCATGCGACATCTTT 59.746 50.000 0.00 0.00 38.13 2.52
4093 5715 0.379669 GCTCCCATGCGACATCTTTG 59.620 55.000 0.00 0.00 0.00 2.77
4095 5717 1.938577 CTCCCATGCGACATCTTTGAG 59.061 52.381 0.00 0.00 0.00 3.02
4096 5718 1.278985 TCCCATGCGACATCTTTGAGT 59.721 47.619 0.00 0.00 0.00 3.41
4097 5719 2.086869 CCCATGCGACATCTTTGAGTT 58.913 47.619 0.00 0.00 0.00 3.01
4098 5720 2.159476 CCCATGCGACATCTTTGAGTTG 60.159 50.000 0.00 0.00 0.00 3.16
4099 5721 2.743664 CCATGCGACATCTTTGAGTTGA 59.256 45.455 0.00 0.00 0.00 3.18
4103 5725 4.786507 TGCGACATCTTTGAGTTGAATTG 58.213 39.130 0.00 0.00 0.00 2.32
4104 5726 4.275689 TGCGACATCTTTGAGTTGAATTGT 59.724 37.500 0.00 0.00 0.00 2.71
4105 5727 4.848299 GCGACATCTTTGAGTTGAATTGTC 59.152 41.667 0.00 0.00 0.00 3.18
4106 5728 5.334414 GCGACATCTTTGAGTTGAATTGTCT 60.334 40.000 0.00 0.00 32.19 3.41
4107 5729 6.302615 CGACATCTTTGAGTTGAATTGTCTC 58.697 40.000 0.00 0.00 32.19 3.36
4108 5730 6.146837 CGACATCTTTGAGTTGAATTGTCTCT 59.853 38.462 0.00 0.00 32.19 3.10
4111 5733 7.664731 ACATCTTTGAGTTGAATTGTCTCTCAT 59.335 33.333 0.00 0.00 36.30 2.90
4113 5735 5.618056 TTGAGTTGAATTGTCTCTCATGC 57.382 39.130 0.00 0.00 36.30 4.06
4114 5736 3.681417 TGAGTTGAATTGTCTCTCATGCG 59.319 43.478 0.00 0.00 33.70 4.73
4116 5738 4.511527 AGTTGAATTGTCTCTCATGCGAT 58.488 39.130 0.00 0.00 0.00 4.58
4117 5739 4.331992 AGTTGAATTGTCTCTCATGCGATG 59.668 41.667 0.00 0.00 0.00 3.84
4118 5740 2.610833 TGAATTGTCTCTCATGCGATGC 59.389 45.455 0.00 0.00 0.00 3.91
4120 5742 0.807275 TTGTCTCTCATGCGATGCCG 60.807 55.000 0.00 0.00 39.16 5.69
4121 5743 1.227089 GTCTCTCATGCGATGCCGT 60.227 57.895 0.00 0.00 38.24 5.68
4124 5746 1.769098 CTCTCATGCGATGCCGTTGG 61.769 60.000 0.00 0.00 38.24 3.77
4125 5747 2.046411 TCATGCGATGCCGTTGGT 60.046 55.556 0.00 0.00 38.24 3.67
4126 5748 1.647545 CTCATGCGATGCCGTTGGTT 61.648 55.000 0.00 0.00 38.24 3.67
4127 5749 1.514657 CATGCGATGCCGTTGGTTG 60.515 57.895 0.00 0.00 38.24 3.77
4128 5750 1.971167 ATGCGATGCCGTTGGTTGT 60.971 52.632 0.00 0.00 38.24 3.32
4130 5752 0.885150 TGCGATGCCGTTGGTTGTAA 60.885 50.000 0.00 0.00 38.24 2.41
4131 5753 0.450184 GCGATGCCGTTGGTTGTAAT 59.550 50.000 0.00 0.00 38.24 1.89
4132 5754 1.793714 GCGATGCCGTTGGTTGTAATG 60.794 52.381 0.00 0.00 38.24 1.90
4133 5755 1.202132 CGATGCCGTTGGTTGTAATGG 60.202 52.381 0.00 0.00 39.28 3.16
4138 5760 1.737793 CCGTTGGTTGTAATGGCTCTC 59.262 52.381 0.00 0.00 30.55 3.20
4141 5763 3.181507 CGTTGGTTGTAATGGCTCTCATG 60.182 47.826 0.00 0.00 35.99 3.07
4142 5764 2.368439 TGGTTGTAATGGCTCTCATGC 58.632 47.619 0.00 0.00 35.99 4.06
4143 5765 1.331756 GGTTGTAATGGCTCTCATGCG 59.668 52.381 0.00 0.00 35.99 4.73
4144 5766 2.279741 GTTGTAATGGCTCTCATGCGA 58.720 47.619 0.00 0.00 35.99 5.10
4145 5767 1.939974 TGTAATGGCTCTCATGCGAC 58.060 50.000 0.00 0.00 35.99 5.19
4146 5768 0.855349 GTAATGGCTCTCATGCGACG 59.145 55.000 0.00 0.00 35.99 5.12
4147 5769 0.459899 TAATGGCTCTCATGCGACGT 59.540 50.000 0.00 0.00 35.99 4.34
4148 5770 0.807667 AATGGCTCTCATGCGACGTC 60.808 55.000 5.18 5.18 35.99 4.34
4149 5771 1.670949 ATGGCTCTCATGCGACGTCT 61.671 55.000 14.70 0.00 34.22 4.18
4151 5773 1.142778 GGCTCTCATGCGACGTCTTC 61.143 60.000 14.70 5.87 0.00 2.87
4152 5774 1.142778 GCTCTCATGCGACGTCTTCC 61.143 60.000 14.70 2.42 0.00 3.46
4153 5775 0.171231 CTCTCATGCGACGTCTTCCA 59.829 55.000 14.70 8.35 0.00 3.53
4154 5776 0.171231 TCTCATGCGACGTCTTCCAG 59.829 55.000 14.70 3.23 0.00 3.86
4155 5777 1.416813 CTCATGCGACGTCTTCCAGC 61.417 60.000 14.70 9.68 0.00 4.85
4159 5781 2.507102 CGACGTCTTCCAGCGCAT 60.507 61.111 14.70 0.00 0.00 4.73
4160 5782 1.226575 CGACGTCTTCCAGCGCATA 60.227 57.895 14.70 0.00 0.00 3.14
4162 5784 1.355971 GACGTCTTCCAGCGCATAAA 58.644 50.000 11.47 0.00 0.00 1.40
4164 5786 3.120792 GACGTCTTCCAGCGCATAAATA 58.879 45.455 11.47 0.00 0.00 1.40
4165 5787 3.123804 ACGTCTTCCAGCGCATAAATAG 58.876 45.455 11.47 0.00 0.00 1.73
4166 5788 2.096713 CGTCTTCCAGCGCATAAATAGC 60.097 50.000 11.47 0.00 0.00 2.97
4167 5789 3.134458 GTCTTCCAGCGCATAAATAGCT 58.866 45.455 11.47 0.00 42.64 3.32
4168 5790 3.185391 GTCTTCCAGCGCATAAATAGCTC 59.815 47.826 11.47 0.00 39.48 4.09
4169 5791 2.908688 TCCAGCGCATAAATAGCTCA 57.091 45.000 11.47 0.00 39.48 4.26
4170 5792 3.192541 TCCAGCGCATAAATAGCTCAA 57.807 42.857 11.47 0.00 39.48 3.02
4171 5793 3.133691 TCCAGCGCATAAATAGCTCAAG 58.866 45.455 11.47 0.00 39.48 3.02
4172 5794 2.350197 CCAGCGCATAAATAGCTCAAGC 60.350 50.000 11.47 0.00 39.48 4.01
4173 5795 2.288729 CAGCGCATAAATAGCTCAAGCA 59.711 45.455 11.47 0.00 45.16 3.91
4174 5796 2.945008 AGCGCATAAATAGCTCAAGCAA 59.055 40.909 11.47 0.00 45.16 3.91
4175 5797 3.003068 AGCGCATAAATAGCTCAAGCAAG 59.997 43.478 11.47 0.00 45.16 4.01
4179 5801 5.447683 CGCATAAATAGCTCAAGCAAGACAA 60.448 40.000 4.59 0.00 45.16 3.18
4180 5802 5.741040 GCATAAATAGCTCAAGCAAGACAAC 59.259 40.000 4.59 0.00 45.16 3.32
4181 5803 4.773323 AAATAGCTCAAGCAAGACAACC 57.227 40.909 4.59 0.00 45.16 3.77
4182 5804 2.185004 TAGCTCAAGCAAGACAACCC 57.815 50.000 4.59 0.00 45.16 4.11
4183 5805 0.475906 AGCTCAAGCAAGACAACCCT 59.524 50.000 4.59 0.00 45.16 4.34
4184 5806 1.133668 AGCTCAAGCAAGACAACCCTT 60.134 47.619 4.59 0.00 45.16 3.95
4185 5807 1.683385 GCTCAAGCAAGACAACCCTTT 59.317 47.619 0.00 0.00 41.59 3.11
4186 5808 2.101415 GCTCAAGCAAGACAACCCTTTT 59.899 45.455 0.00 0.00 41.59 2.27
4187 5809 3.317993 GCTCAAGCAAGACAACCCTTTTA 59.682 43.478 0.00 0.00 41.59 1.52
4188 5810 4.793028 GCTCAAGCAAGACAACCCTTTTAC 60.793 45.833 0.00 0.00 41.59 2.01
4190 5812 1.607148 AGCAAGACAACCCTTTTACGC 59.393 47.619 0.00 0.00 0.00 4.42
4191 5813 1.662026 GCAAGACAACCCTTTTACGCG 60.662 52.381 3.53 3.53 0.00 6.01
4192 5814 1.069500 CAAGACAACCCTTTTACGCGG 60.069 52.381 12.47 0.00 0.00 6.46
4193 5815 1.208358 GACAACCCTTTTACGCGGC 59.792 57.895 12.47 0.00 0.00 6.53
4195 5817 0.035176 ACAACCCTTTTACGCGGCTA 59.965 50.000 12.47 0.00 0.00 3.93
4196 5818 0.725117 CAACCCTTTTACGCGGCTAG 59.275 55.000 12.47 1.64 0.00 3.42
4197 5819 0.322648 AACCCTTTTACGCGGCTAGT 59.677 50.000 12.47 0.00 0.00 2.57
4198 5820 0.322648 ACCCTTTTACGCGGCTAGTT 59.677 50.000 12.47 0.00 0.00 2.24
4199 5821 0.725117 CCCTTTTACGCGGCTAGTTG 59.275 55.000 12.47 0.00 0.00 3.16
4200 5822 0.725117 CCTTTTACGCGGCTAGTTGG 59.275 55.000 12.47 0.00 0.00 3.77
4201 5823 0.096454 CTTTTACGCGGCTAGTTGGC 59.904 55.000 12.47 0.00 37.94 4.52
4203 5825 1.017177 TTTACGCGGCTAGTTGGCTG 61.017 55.000 12.47 0.00 41.16 4.85
4204 5826 2.162338 TTACGCGGCTAGTTGGCTGT 62.162 55.000 12.47 0.00 40.42 4.40
4206 5828 1.447140 CGCGGCTAGTTGGCTGTTA 60.447 57.895 0.00 0.00 40.42 2.41
4207 5829 1.421410 CGCGGCTAGTTGGCTGTTAG 61.421 60.000 0.00 0.00 40.42 2.34
4208 5830 0.391263 GCGGCTAGTTGGCTGTTAGT 60.391 55.000 0.00 0.00 40.42 2.24
4209 5831 1.944430 GCGGCTAGTTGGCTGTTAGTT 60.944 52.381 0.00 0.00 40.42 2.24
4210 5832 2.675889 GCGGCTAGTTGGCTGTTAGTTA 60.676 50.000 0.00 0.00 40.42 2.24
4211 5833 3.187700 CGGCTAGTTGGCTGTTAGTTAG 58.812 50.000 0.00 0.00 39.32 2.34
4213 5835 2.937149 GCTAGTTGGCTGTTAGTTAGGC 59.063 50.000 0.00 0.00 40.77 3.93
4215 5837 3.059352 AGTTGGCTGTTAGTTAGGCTG 57.941 47.619 0.00 0.00 40.96 4.85
4217 5839 3.003480 GTTGGCTGTTAGTTAGGCTGAG 58.997 50.000 0.00 0.00 40.96 3.35
4218 5840 1.555075 TGGCTGTTAGTTAGGCTGAGG 59.445 52.381 0.00 0.00 40.96 3.86
4219 5841 1.555533 GGCTGTTAGTTAGGCTGAGGT 59.444 52.381 0.00 0.00 37.70 3.85
4220 5842 2.027100 GGCTGTTAGTTAGGCTGAGGTT 60.027 50.000 0.00 0.00 37.70 3.50
4221 5843 3.559384 GGCTGTTAGTTAGGCTGAGGTTT 60.559 47.826 0.00 0.00 37.70 3.27
4222 5844 3.437049 GCTGTTAGTTAGGCTGAGGTTTG 59.563 47.826 0.00 0.00 0.00 2.93
4223 5845 4.003648 CTGTTAGTTAGGCTGAGGTTTGG 58.996 47.826 0.00 0.00 0.00 3.28
4224 5846 3.393278 TGTTAGTTAGGCTGAGGTTTGGT 59.607 43.478 0.00 0.00 0.00 3.67
4225 5847 4.141344 TGTTAGTTAGGCTGAGGTTTGGTT 60.141 41.667 0.00 0.00 0.00 3.67
4226 5848 5.072058 TGTTAGTTAGGCTGAGGTTTGGTTA 59.928 40.000 0.00 0.00 0.00 2.85
4227 5849 4.287766 AGTTAGGCTGAGGTTTGGTTAG 57.712 45.455 0.00 0.00 0.00 2.34
4228 5850 3.009143 AGTTAGGCTGAGGTTTGGTTAGG 59.991 47.826 0.00 0.00 0.00 2.69
4229 5851 1.742308 AGGCTGAGGTTTGGTTAGGA 58.258 50.000 0.00 0.00 0.00 2.94
4230 5852 1.351350 AGGCTGAGGTTTGGTTAGGAC 59.649 52.381 0.00 0.00 0.00 3.85
4231 5853 1.073284 GGCTGAGGTTTGGTTAGGACA 59.927 52.381 0.00 0.00 0.00 4.02
4232 5854 2.152016 GCTGAGGTTTGGTTAGGACAC 58.848 52.381 0.00 0.00 0.00 3.67
4233 5855 2.224548 GCTGAGGTTTGGTTAGGACACT 60.225 50.000 0.00 0.00 0.00 3.55
4236 5858 1.423921 AGGTTTGGTTAGGACACTGGG 59.576 52.381 0.00 0.00 0.00 4.45
4237 5859 1.546998 GGTTTGGTTAGGACACTGGGG 60.547 57.143 0.00 0.00 0.00 4.96
4239 5861 0.402272 TTGGTTAGGACACTGGGGGT 60.402 55.000 0.00 0.00 0.00 4.95
4240 5862 0.402272 TGGTTAGGACACTGGGGGTT 60.402 55.000 0.00 0.00 0.00 4.11
4241 5863 1.132462 TGGTTAGGACACTGGGGGTTA 60.132 52.381 0.00 0.00 0.00 2.85
4242 5864 2.202707 GGTTAGGACACTGGGGGTTAT 58.797 52.381 0.00 0.00 0.00 1.89
4243 5865 2.092592 GGTTAGGACACTGGGGGTTATG 60.093 54.545 0.00 0.00 0.00 1.90
4244 5866 2.574824 GTTAGGACACTGGGGGTTATGT 59.425 50.000 0.00 0.00 0.00 2.29
4245 5867 0.991920 AGGACACTGGGGGTTATGTG 59.008 55.000 0.00 0.00 36.59 3.21
4246 5868 0.679960 GGACACTGGGGGTTATGTGC 60.680 60.000 0.00 0.00 34.14 4.57
4247 5869 0.328258 GACACTGGGGGTTATGTGCT 59.672 55.000 0.00 0.00 34.14 4.40
4248 5870 0.328258 ACACTGGGGGTTATGTGCTC 59.672 55.000 0.00 0.00 34.14 4.26
4250 5872 1.837439 CACTGGGGGTTATGTGCTCTA 59.163 52.381 0.00 0.00 0.00 2.43
4251 5873 2.238646 CACTGGGGGTTATGTGCTCTAA 59.761 50.000 0.00 0.00 0.00 2.10
4252 5874 2.238898 ACTGGGGGTTATGTGCTCTAAC 59.761 50.000 0.00 0.00 0.00 2.34
4255 5877 2.421529 GGGGGTTATGTGCTCTAACTGG 60.422 54.545 0.00 0.00 31.26 4.00
4256 5878 2.238898 GGGGTTATGTGCTCTAACTGGT 59.761 50.000 0.00 0.00 31.26 4.00
4258 5880 3.270877 GGTTATGTGCTCTAACTGGTGG 58.729 50.000 0.00 0.00 31.26 4.61
4259 5881 3.270877 GTTATGTGCTCTAACTGGTGGG 58.729 50.000 0.00 0.00 0.00 4.61
4261 5883 0.766674 TGTGCTCTAACTGGTGGGGT 60.767 55.000 0.00 0.00 0.00 4.95
4262 5884 0.036294 GTGCTCTAACTGGTGGGGTC 60.036 60.000 0.00 0.00 0.00 4.46
4278 5900 1.683365 GTCCACCTAGGGCCACGTA 60.683 63.158 14.81 0.00 35.31 3.57
4279 5901 1.380785 TCCACCTAGGGCCACGTAG 60.381 63.158 14.81 1.68 38.24 3.51
4282 5904 0.968901 CACCTAGGGCCACGTAGTCA 60.969 60.000 14.81 0.00 41.61 3.41
4283 5905 0.251922 ACCTAGGGCCACGTAGTCAA 60.252 55.000 14.81 0.00 41.61 3.18
4284 5906 0.460311 CCTAGGGCCACGTAGTCAAG 59.540 60.000 6.18 0.00 41.61 3.02
4286 5908 1.405821 CTAGGGCCACGTAGTCAAGAG 59.594 57.143 6.18 0.00 41.61 2.85
4288 5910 0.108756 GGGCCACGTAGTCAAGAGTC 60.109 60.000 4.39 0.00 41.61 3.36
4289 5911 0.601558 GGCCACGTAGTCAAGAGTCA 59.398 55.000 0.00 0.00 41.61 3.41
4290 5912 1.000506 GGCCACGTAGTCAAGAGTCAA 59.999 52.381 0.00 0.00 41.61 3.18
4291 5913 2.059541 GCCACGTAGTCAAGAGTCAAC 58.940 52.381 0.00 0.00 41.61 3.18
4293 5915 2.316792 CACGTAGTCAAGAGTCAACCG 58.683 52.381 0.00 0.00 41.61 4.44
4294 5916 1.952296 ACGTAGTCAAGAGTCAACCGT 59.048 47.619 0.00 0.00 29.74 4.83
4296 5918 2.667724 CGTAGTCAAGAGTCAACCGTCC 60.668 54.545 0.00 0.00 0.00 4.79
4297 5919 1.410004 AGTCAAGAGTCAACCGTCCA 58.590 50.000 0.00 0.00 0.00 4.02
4298 5920 1.068741 AGTCAAGAGTCAACCGTCCAC 59.931 52.381 0.00 0.00 0.00 4.02
4299 5921 0.031585 TCAAGAGTCAACCGTCCACG 59.968 55.000 0.00 0.00 39.44 4.94
4301 5923 0.031721 AAGAGTCAACCGTCCACGAC 59.968 55.000 0.00 0.00 43.02 4.34
4302 5924 0.822532 AGAGTCAACCGTCCACGACT 60.823 55.000 0.00 0.00 43.02 4.18
4303 5925 0.386985 GAGTCAACCGTCCACGACTC 60.387 60.000 0.00 0.00 45.32 3.36
4304 5926 1.728426 GTCAACCGTCCACGACTCG 60.728 63.158 0.00 0.00 43.02 4.18
4306 5928 1.728426 CAACCGTCCACGACTCGAC 60.728 63.158 5.20 0.00 43.02 4.20
4313 7027 2.126965 CACGACTCGACCGGTGAC 60.127 66.667 14.63 0.00 0.00 3.67
4321 7035 1.660575 CGACCGGTGACTGTGTGAC 60.661 63.158 14.63 0.00 0.00 3.67
4326 7040 2.244651 GGTGACTGTGTGACCGTGC 61.245 63.158 0.00 0.00 29.19 5.34
4327 7041 1.227263 GTGACTGTGTGACCGTGCT 60.227 57.895 0.00 0.00 0.00 4.40
4328 7042 1.067416 TGACTGTGTGACCGTGCTC 59.933 57.895 0.00 0.00 0.00 4.26
4329 7043 2.016704 GACTGTGTGACCGTGCTCG 61.017 63.158 0.14 0.14 0.00 5.03
4330 7044 2.335011 CTGTGTGACCGTGCTCGA 59.665 61.111 10.21 0.00 39.71 4.04
4331 7045 2.016704 CTGTGTGACCGTGCTCGAC 61.017 63.158 10.21 0.47 39.71 4.20
4333 7047 1.729838 GTGTGACCGTGCTCGACTC 60.730 63.158 10.21 4.45 39.71 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.592308 GCTCAGGGGACATGGGTC 59.408 66.667 0.00 0.00 43.55 4.46
1 2 3.017581 GGCTCAGGGGACATGGGT 61.018 66.667 0.00 0.00 0.00 4.51
2 3 4.181010 CGGCTCAGGGGACATGGG 62.181 72.222 0.00 0.00 0.00 4.00
3 4 4.864334 GCGGCTCAGGGGACATGG 62.864 72.222 0.00 0.00 0.00 3.66
10 11 2.413437 CTATCAGTCGCGGCTCAGGG 62.413 65.000 11.99 0.00 0.00 4.45
11 12 1.007964 CTATCAGTCGCGGCTCAGG 60.008 63.158 11.99 0.00 0.00 3.86
12 13 0.040514 CTCTATCAGTCGCGGCTCAG 60.041 60.000 11.99 8.87 0.00 3.35
13 14 2.025719 CTCTATCAGTCGCGGCTCA 58.974 57.895 11.99 0.00 0.00 4.26
14 15 1.371145 GCTCTATCAGTCGCGGCTC 60.371 63.158 11.99 0.00 0.00 4.70
15 16 2.069465 CTGCTCTATCAGTCGCGGCT 62.069 60.000 7.80 7.80 0.00 5.52
16 17 1.659954 CTGCTCTATCAGTCGCGGC 60.660 63.158 0.21 0.21 0.00 6.53
17 18 0.945099 TACTGCTCTATCAGTCGCGG 59.055 55.000 6.13 0.00 45.32 6.46
18 19 1.600013 AGTACTGCTCTATCAGTCGCG 59.400 52.381 0.00 0.00 45.32 5.87
19 20 2.614520 TCAGTACTGCTCTATCAGTCGC 59.385 50.000 18.45 0.00 45.32 5.19
20 21 4.884458 TTCAGTACTGCTCTATCAGTCG 57.116 45.455 18.45 0.00 45.32 4.18
21 22 9.190858 CAAATATTCAGTACTGCTCTATCAGTC 57.809 37.037 18.45 0.00 45.32 3.51
23 24 8.147058 ACCAAATATTCAGTACTGCTCTATCAG 58.853 37.037 18.45 6.57 39.86 2.90
24 25 8.023021 ACCAAATATTCAGTACTGCTCTATCA 57.977 34.615 18.45 0.00 0.00 2.15
25 26 9.413048 GTACCAAATATTCAGTACTGCTCTATC 57.587 37.037 18.45 0.00 33.80 2.08
26 27 8.924303 TGTACCAAATATTCAGTACTGCTCTAT 58.076 33.333 18.45 11.03 36.79 1.98
27 28 8.301252 TGTACCAAATATTCAGTACTGCTCTA 57.699 34.615 18.45 9.28 36.79 2.43
28 29 7.182817 TGTACCAAATATTCAGTACTGCTCT 57.817 36.000 18.45 7.37 36.79 4.09
29 30 7.011482 CCTTGTACCAAATATTCAGTACTGCTC 59.989 40.741 18.45 0.00 36.79 4.26
30 31 6.823689 CCTTGTACCAAATATTCAGTACTGCT 59.176 38.462 18.45 10.17 36.79 4.24
31 32 6.598064 ACCTTGTACCAAATATTCAGTACTGC 59.402 38.462 18.45 0.06 36.79 4.40
32 33 9.095065 GTACCTTGTACCAAATATTCAGTACTG 57.905 37.037 17.17 17.17 36.79 2.74
33 34 9.043548 AGTACCTTGTACCAAATATTCAGTACT 57.956 33.333 20.27 11.68 36.79 2.73
34 35 9.310716 GAGTACCTTGTACCAAATATTCAGTAC 57.689 37.037 15.91 15.91 36.47 2.73
35 36 8.480501 GGAGTACCTTGTACCAAATATTCAGTA 58.519 37.037 0.96 0.00 0.00 2.74
36 37 7.336396 GGAGTACCTTGTACCAAATATTCAGT 58.664 38.462 0.96 0.00 0.00 3.41
37 38 6.766467 GGGAGTACCTTGTACCAAATATTCAG 59.234 42.308 0.96 0.00 35.85 3.02
38 39 6.655930 GGGAGTACCTTGTACCAAATATTCA 58.344 40.000 0.96 0.00 35.85 2.57
54 55 7.277319 CGACTAAAAAGAAACATAGGGAGTACC 59.723 40.741 0.00 0.00 40.67 3.34
55 56 7.277319 CCGACTAAAAAGAAACATAGGGAGTAC 59.723 40.741 0.00 0.00 0.00 2.73
56 57 7.325694 CCGACTAAAAAGAAACATAGGGAGTA 58.674 38.462 0.00 0.00 0.00 2.59
57 58 6.171213 CCGACTAAAAAGAAACATAGGGAGT 58.829 40.000 0.00 0.00 0.00 3.85
58 59 5.064834 GCCGACTAAAAAGAAACATAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
59 60 4.939439 GCCGACTAAAAAGAAACATAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
60 61 4.698304 TGCCGACTAAAAAGAAACATAGGG 59.302 41.667 0.00 0.00 0.00 3.53
61 62 5.873179 TGCCGACTAAAAAGAAACATAGG 57.127 39.130 0.00 0.00 0.00 2.57
62 63 7.970384 TGTATGCCGACTAAAAAGAAACATAG 58.030 34.615 0.00 0.00 0.00 2.23
63 64 7.908827 TGTATGCCGACTAAAAAGAAACATA 57.091 32.000 0.00 0.00 0.00 2.29
64 65 6.811253 TGTATGCCGACTAAAAAGAAACAT 57.189 33.333 0.00 0.00 0.00 2.71
65 66 6.621316 TTGTATGCCGACTAAAAAGAAACA 57.379 33.333 0.00 0.00 0.00 2.83
66 67 7.917720 TTTTGTATGCCGACTAAAAAGAAAC 57.082 32.000 0.00 0.00 0.00 2.78
67 68 9.535878 AAATTTTGTATGCCGACTAAAAAGAAA 57.464 25.926 0.00 0.00 29.93 2.52
68 69 8.973378 CAAATTTTGTATGCCGACTAAAAAGAA 58.027 29.630 0.78 0.00 29.93 2.52
69 70 7.596995 CCAAATTTTGTATGCCGACTAAAAAGA 59.403 33.333 8.26 0.00 29.93 2.52
70 71 7.383843 ACCAAATTTTGTATGCCGACTAAAAAG 59.616 33.333 8.26 0.00 29.93 2.27
71 72 7.210873 ACCAAATTTTGTATGCCGACTAAAAA 58.789 30.769 8.26 0.00 29.93 1.94
72 73 6.750148 ACCAAATTTTGTATGCCGACTAAAA 58.250 32.000 8.26 0.00 29.93 1.52
73 74 6.016192 TGACCAAATTTTGTATGCCGACTAAA 60.016 34.615 8.26 0.00 0.00 1.85
74 75 5.473846 TGACCAAATTTTGTATGCCGACTAA 59.526 36.000 8.26 0.00 0.00 2.24
75 76 5.004448 TGACCAAATTTTGTATGCCGACTA 58.996 37.500 8.26 0.00 0.00 2.59
76 77 3.823873 TGACCAAATTTTGTATGCCGACT 59.176 39.130 8.26 0.00 0.00 4.18
77 78 4.167554 TGACCAAATTTTGTATGCCGAC 57.832 40.909 8.26 0.00 0.00 4.79
78 79 4.855715 TTGACCAAATTTTGTATGCCGA 57.144 36.364 8.26 0.00 0.00 5.54
79 80 4.987912 ACTTTGACCAAATTTTGTATGCCG 59.012 37.500 8.26 0.00 0.00 5.69
80 81 5.988561 TGACTTTGACCAAATTTTGTATGCC 59.011 36.000 8.26 0.00 0.00 4.40
81 82 7.475771 TTGACTTTGACCAAATTTTGTATGC 57.524 32.000 8.26 0.00 0.00 3.14
82 83 9.097257 AGTTTGACTTTGACCAAATTTTGTATG 57.903 29.630 8.26 0.00 35.14 2.39
83 84 9.665719 AAGTTTGACTTTGACCAAATTTTGTAT 57.334 25.926 8.26 0.00 34.11 2.29
84 85 9.495572 AAAGTTTGACTTTGACCAAATTTTGTA 57.504 25.926 8.26 0.00 45.83 2.41
85 86 7.977789 AAGTTTGACTTTGACCAAATTTTGT 57.022 28.000 8.26 0.00 34.11 2.83
99 100 5.878669 AGTCGAGGTTAACAAAGTTTGACTT 59.121 36.000 22.23 9.37 40.80 3.01
100 101 5.425630 AGTCGAGGTTAACAAAGTTTGACT 58.574 37.500 22.23 8.55 0.00 3.41
101 102 5.729974 AGTCGAGGTTAACAAAGTTTGAC 57.270 39.130 22.23 9.70 0.00 3.18
102 103 7.043565 ACTTAGTCGAGGTTAACAAAGTTTGA 58.956 34.615 22.23 0.00 0.00 2.69
103 104 7.242914 ACTTAGTCGAGGTTAACAAAGTTTG 57.757 36.000 14.13 14.13 0.00 2.93
104 105 7.854557 AACTTAGTCGAGGTTAACAAAGTTT 57.145 32.000 8.10 0.00 33.41 2.66
105 106 7.854557 AAACTTAGTCGAGGTTAACAAAGTT 57.145 32.000 8.10 7.97 37.48 2.66
247 248 9.134734 GTCAAAGTCAAACTTTACAATGTTTGA 57.865 29.630 22.32 22.32 45.84 2.69
248 249 8.379902 GGTCAAAGTCAAACTTTACAATGTTTG 58.620 33.333 19.61 19.61 45.84 2.93
249 250 7.547722 GGGTCAAAGTCAAACTTTACAATGTTT 59.452 33.333 4.86 1.35 45.84 2.83
250 251 7.039270 GGGTCAAAGTCAAACTTTACAATGTT 58.961 34.615 4.86 0.00 45.84 2.71
251 252 6.153680 TGGGTCAAAGTCAAACTTTACAATGT 59.846 34.615 4.86 0.00 45.84 2.71
252 253 6.568869 TGGGTCAAAGTCAAACTTTACAATG 58.431 36.000 4.86 0.00 45.84 2.82
253 254 6.783708 TGGGTCAAAGTCAAACTTTACAAT 57.216 33.333 4.86 0.00 45.84 2.71
254 255 6.591750 TTGGGTCAAAGTCAAACTTTACAA 57.408 33.333 4.86 6.10 45.84 2.41
255 256 6.783708 ATTGGGTCAAAGTCAAACTTTACA 57.216 33.333 4.86 1.07 45.84 2.41
256 257 8.487313 AAAATTGGGTCAAAGTCAAACTTTAC 57.513 30.769 4.86 4.82 45.84 2.01
260 261 9.927668 CATATAAAATTGGGTCAAAGTCAAACT 57.072 29.630 0.00 0.00 0.00 2.66
261 262 8.655970 GCATATAAAATTGGGTCAAAGTCAAAC 58.344 33.333 0.00 0.00 0.00 2.93
267 268 7.775120 AGTCTGCATATAAAATTGGGTCAAAG 58.225 34.615 0.00 0.00 0.00 2.77
270 271 8.815565 TTTAGTCTGCATATAAAATTGGGTCA 57.184 30.769 0.00 0.00 0.00 4.02
279 280 9.221933 TCCGTTTCTTTTTAGTCTGCATATAAA 57.778 29.630 0.00 0.00 0.00 1.40
287 288 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
291 292 6.171213 ACATACTCCCTCCGTTTCTTTTTAG 58.829 40.000 0.00 0.00 0.00 1.85
299 300 6.996282 CCAATTATAACATACTCCCTCCGTTT 59.004 38.462 0.00 0.00 0.00 3.60
301 302 5.842328 TCCAATTATAACATACTCCCTCCGT 59.158 40.000 0.00 0.00 0.00 4.69
304 305 7.661847 CCAAGTCCAATTATAACATACTCCCTC 59.338 40.741 0.00 0.00 0.00 4.30
313 314 9.308000 AGTTTGAATCCAAGTCCAATTATAACA 57.692 29.630 0.00 0.00 33.23 2.41
338 339 5.957798 ACTTCATGCCATATTTTCACACAG 58.042 37.500 0.00 0.00 0.00 3.66
349 350 1.831106 AGGACACGACTTCATGCCATA 59.169 47.619 0.00 0.00 0.00 2.74
351 352 1.204704 CTAGGACACGACTTCATGCCA 59.795 52.381 0.00 0.00 0.00 4.92
354 355 5.297029 TGATCTACTAGGACACGACTTCATG 59.703 44.000 0.00 0.00 0.00 3.07
371 372 3.381949 GGCCACGATACAAGTGATCTAC 58.618 50.000 0.00 0.00 41.83 2.59
376 377 0.535335 GAGGGCCACGATACAAGTGA 59.465 55.000 6.18 0.00 41.83 3.41
387 389 1.839424 GCATTATATGGGAGGGCCAC 58.161 55.000 6.18 0.00 35.15 5.01
389 391 0.618458 TCGCATTATATGGGAGGGCC 59.382 55.000 0.00 0.00 45.72 5.80
396 398 5.977635 TGGATCTACCTTCGCATTATATGG 58.022 41.667 0.00 0.00 39.86 2.74
397 399 7.267857 TCATGGATCTACCTTCGCATTATATG 58.732 38.462 0.00 0.00 39.86 1.78
416 418 6.790232 TGACGGCATAGATTATATCATGGA 57.210 37.500 0.00 0.00 0.00 3.41
432 434 4.034626 CGTGTTTGGATTATTATGACGGCA 59.965 41.667 0.00 0.00 0.00 5.69
446 448 2.203422 CCCCCTTGCGTGTTTGGA 60.203 61.111 0.00 0.00 0.00 3.53
494 497 2.797278 CGGCTACATCCCGGAGCTT 61.797 63.158 0.73 0.00 41.99 3.74
495 498 3.227276 CGGCTACATCCCGGAGCT 61.227 66.667 0.73 0.00 41.99 4.09
496 499 3.214250 CTCGGCTACATCCCGGAGC 62.214 68.421 0.73 2.46 45.60 4.70
497 500 3.043419 CTCGGCTACATCCCGGAG 58.957 66.667 0.73 0.00 45.60 4.63
521 545 6.938507 ACACCAAGATATGTTAACGAGGTTA 58.061 36.000 0.26 0.00 0.00 2.85
535 559 0.541392 AGCGGCATGACACCAAGATA 59.459 50.000 0.00 0.00 0.00 1.98
540 564 2.046988 CTGAGCGGCATGACACCA 60.047 61.111 0.00 0.00 0.00 4.17
552 576 2.095364 CAGACAATCACAAAGGCTGAGC 60.095 50.000 0.00 0.00 0.00 4.26
554 578 2.158623 ACCAGACAATCACAAAGGCTGA 60.159 45.455 0.00 0.00 0.00 4.26
555 579 2.227388 GACCAGACAATCACAAAGGCTG 59.773 50.000 0.00 0.00 0.00 4.85
556 580 2.508526 GACCAGACAATCACAAAGGCT 58.491 47.619 0.00 0.00 0.00 4.58
557 581 1.197721 CGACCAGACAATCACAAAGGC 59.802 52.381 0.00 0.00 0.00 4.35
558 582 2.480419 GACGACCAGACAATCACAAAGG 59.520 50.000 0.00 0.00 0.00 3.11
559 583 2.155732 CGACGACCAGACAATCACAAAG 59.844 50.000 0.00 0.00 0.00 2.77
560 584 2.131972 CGACGACCAGACAATCACAAA 58.868 47.619 0.00 0.00 0.00 2.83
561 585 1.338655 TCGACGACCAGACAATCACAA 59.661 47.619 0.00 0.00 0.00 3.33
577 601 2.548904 AGGTACGCAGTCATCTATCGAC 59.451 50.000 0.00 0.00 43.93 4.20
652 677 0.466189 GTAGTGTGGCCATCATGGGG 60.466 60.000 9.72 0.00 38.19 4.96
653 678 0.548031 AGTAGTGTGGCCATCATGGG 59.452 55.000 9.72 0.00 38.19 4.00
772 831 3.536158 TGAGAAAACAAAATCTCGCGG 57.464 42.857 6.13 0.00 44.01 6.46
813 874 0.032267 CGTAAGCCTCGGGGATTCTC 59.968 60.000 8.84 2.26 40.75 2.87
845 906 2.954611 GCGAAGGAAACACCAGGC 59.045 61.111 0.00 0.00 42.04 4.85
847 908 2.556287 GCGCGAAGGAAACACCAG 59.444 61.111 12.10 0.00 42.04 4.00
848 909 3.342627 CGCGCGAAGGAAACACCA 61.343 61.111 28.94 0.00 42.04 4.17
857 918 0.387367 AGCAGGTATATCGCGCGAAG 60.387 55.000 38.07 19.76 0.00 3.79
1282 1362 0.322187 CCCTTCCCGGACGAACAATT 60.322 55.000 0.73 0.00 33.16 2.32
1368 1448 1.005394 GTCCTCGTCGCCTCCAAAA 60.005 57.895 0.00 0.00 0.00 2.44
2210 2332 0.855349 GCATTGGTCGCAGTAGATCG 59.145 55.000 0.00 0.00 0.00 3.69
2251 2373 6.288294 TCGGAGTAATTTGGGATGTATTGAG 58.712 40.000 0.00 0.00 0.00 3.02
2252 2374 6.099125 TCTCGGAGTAATTTGGGATGTATTGA 59.901 38.462 4.69 0.00 0.00 2.57
2387 2509 1.152368 GCATAGCCATGGCCCTTCT 59.848 57.895 33.14 16.89 43.17 2.85
2663 2785 4.341366 TGTGATGTTGAGAAAGAGCTGA 57.659 40.909 0.00 0.00 0.00 4.26
2664 2786 5.624344 AATGTGATGTTGAGAAAGAGCTG 57.376 39.130 0.00 0.00 0.00 4.24
2666 2788 5.182760 AGGAAATGTGATGTTGAGAAAGAGC 59.817 40.000 0.00 0.00 0.00 4.09
2667 2789 6.128063 GGAGGAAATGTGATGTTGAGAAAGAG 60.128 42.308 0.00 0.00 0.00 2.85
2669 2791 5.391310 CGGAGGAAATGTGATGTTGAGAAAG 60.391 44.000 0.00 0.00 0.00 2.62
2670 2792 4.455533 CGGAGGAAATGTGATGTTGAGAAA 59.544 41.667 0.00 0.00 0.00 2.52
2689 2811 1.032114 GGCATTCTTGTTCCCCGGAG 61.032 60.000 0.73 0.00 0.00 4.63
2691 2813 0.611896 AAGGCATTCTTGTTCCCCGG 60.612 55.000 0.00 0.00 33.76 5.73
2692 2814 0.527565 CAAGGCATTCTTGTTCCCCG 59.472 55.000 0.00 0.00 45.81 5.73
2700 2822 0.877071 CACGTCAGCAAGGCATTCTT 59.123 50.000 0.00 0.00 35.79 2.52
2701 2823 1.580845 GCACGTCAGCAAGGCATTCT 61.581 55.000 0.00 0.00 0.00 2.40
2707 2874 1.572085 CCTCAAGCACGTCAGCAAGG 61.572 60.000 0.36 0.99 36.85 3.61
2717 2884 0.242017 GCACCACATTCCTCAAGCAC 59.758 55.000 0.00 0.00 0.00 4.40
2718 2885 0.178995 TGCACCACATTCCTCAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
2719 2886 0.524862 CTGCACCACATTCCTCAAGC 59.475 55.000 0.00 0.00 0.00 4.01
2720 2887 2.189594 TCTGCACCACATTCCTCAAG 57.810 50.000 0.00 0.00 0.00 3.02
2721 2888 2.715046 GATCTGCACCACATTCCTCAA 58.285 47.619 0.00 0.00 0.00 3.02
2723 2890 1.293924 CGATCTGCACCACATTCCTC 58.706 55.000 0.00 0.00 0.00 3.71
2724 2891 0.107508 CCGATCTGCACCACATTCCT 60.108 55.000 0.00 0.00 0.00 3.36
2726 2893 1.293924 CTCCGATCTGCACCACATTC 58.706 55.000 0.00 0.00 0.00 2.67
2727 2894 0.745845 GCTCCGATCTGCACCACATT 60.746 55.000 0.00 0.00 0.00 2.71
2728 2895 1.153289 GCTCCGATCTGCACCACAT 60.153 57.895 0.00 0.00 0.00 3.21
2729 2896 2.265739 GCTCCGATCTGCACCACA 59.734 61.111 0.00 0.00 0.00 4.17
2730 2897 1.812922 CAGCTCCGATCTGCACCAC 60.813 63.158 0.00 0.00 0.00 4.16
2732 2899 1.227205 CTCAGCTCCGATCTGCACC 60.227 63.158 0.00 0.00 0.00 5.01
2760 2927 0.104304 CCACGTAGAATCCCCGGAAG 59.896 60.000 0.73 0.00 0.00 3.46
2781 2948 2.184579 CCGCCTTTCTCGAGACCC 59.815 66.667 16.36 2.75 0.00 4.46
2832 2999 1.307097 GATGATCAAGTGCTGGGAGC 58.693 55.000 0.00 0.00 42.82 4.70
2833 3000 1.489649 AGGATGATCAAGTGCTGGGAG 59.510 52.381 0.00 0.00 0.00 4.30
2834 3001 1.487976 GAGGATGATCAAGTGCTGGGA 59.512 52.381 0.00 0.00 0.00 4.37
2839 3006 4.134379 TGAGAAGAGGATGATCAAGTGC 57.866 45.455 0.00 0.00 0.00 4.40
2852 3019 8.927721 CATATATGCATGAGAAGTTGAGAAGAG 58.072 37.037 10.16 0.00 0.00 2.85
2880 3047 2.711547 AGGAGAAAAGTAACCAGGCACT 59.288 45.455 0.00 0.00 43.88 4.40
2881 3048 3.141767 AGGAGAAAAGTAACCAGGCAC 57.858 47.619 0.00 0.00 0.00 5.01
2882 3049 3.486383 CAAGGAGAAAAGTAACCAGGCA 58.514 45.455 0.00 0.00 0.00 4.75
2883 3050 2.229062 GCAAGGAGAAAAGTAACCAGGC 59.771 50.000 0.00 0.00 0.00 4.85
2884 3051 3.486383 TGCAAGGAGAAAAGTAACCAGG 58.514 45.455 0.00 0.00 0.00 4.45
2885 3052 5.514274 TTTGCAAGGAGAAAAGTAACCAG 57.486 39.130 0.00 0.00 0.00 4.00
2886 3053 5.738783 GCATTTGCAAGGAGAAAAGTAACCA 60.739 40.000 0.00 0.00 41.59 3.67
2887 3054 4.686091 GCATTTGCAAGGAGAAAAGTAACC 59.314 41.667 0.00 0.00 41.59 2.85
2888 3055 5.403466 CAGCATTTGCAAGGAGAAAAGTAAC 59.597 40.000 5.20 0.00 45.16 2.50
2889 3056 5.301551 TCAGCATTTGCAAGGAGAAAAGTAA 59.698 36.000 5.20 0.00 45.16 2.24
2893 3060 4.141981 TGTTCAGCATTTGCAAGGAGAAAA 60.142 37.500 5.20 0.00 45.16 2.29
2897 3064 2.608752 GGTGTTCAGCATTTGCAAGGAG 60.609 50.000 5.20 0.00 45.16 3.69
2898 3065 1.340889 GGTGTTCAGCATTTGCAAGGA 59.659 47.619 5.20 0.00 45.16 3.36
2915 3082 0.677731 ACCGACATGGCAGATTGGTG 60.678 55.000 11.05 0.00 43.94 4.17
2917 3084 1.996786 GCACCGACATGGCAGATTGG 61.997 60.000 0.00 5.66 43.94 3.16
2918 3085 1.307355 TGCACCGACATGGCAGATTG 61.307 55.000 0.00 0.00 43.94 2.67
2924 3091 4.722700 ACCCTGCACCGACATGGC 62.723 66.667 0.00 0.00 43.94 4.40
2927 3095 1.295423 GTACACCCTGCACCGACAT 59.705 57.895 0.00 0.00 0.00 3.06
2931 3099 4.752879 CCCGTACACCCTGCACCG 62.753 72.222 0.00 0.00 0.00 4.94
3017 3185 5.454966 ACCTTTTCCAGTTGGTTTATGAGT 58.545 37.500 0.00 0.00 36.34 3.41
3047 3215 5.735324 CAATACACTGATCGATCAAGCTTG 58.265 41.667 27.09 20.81 36.18 4.01
3051 3219 5.980698 AAGCAATACACTGATCGATCAAG 57.019 39.130 27.09 23.20 36.18 3.02
3087 3255 1.489649 AGCTCTGACCATCATGGAAGG 59.510 52.381 11.90 0.00 40.96 3.46
3098 3266 7.433425 GCAAATATGAAATGTTTAGCTCTGACC 59.567 37.037 0.00 0.00 35.33 4.02
3148 3319 3.086600 GAGCCTCTCCACCCCCAG 61.087 72.222 0.00 0.00 0.00 4.45
3183 3354 1.476891 GTCCATGTCGGTAGAAGCTCA 59.523 52.381 0.00 0.00 35.57 4.26
3235 3406 1.303309 GCAATCTCCATCTTGTCGGG 58.697 55.000 0.00 0.00 0.00 5.14
3318 3489 0.108804 TTCATCTTCGTGGAGTCGCC 60.109 55.000 0.00 0.00 37.10 5.54
3328 3499 3.620374 AGTAGCAGCATGTTTCATCTTCG 59.380 43.478 0.00 0.00 39.31 3.79
3369 3546 4.674623 GCTCAATCTTGCCATCTCACTTTG 60.675 45.833 0.00 0.00 0.00 2.77
3371 3548 3.015327 GCTCAATCTTGCCATCTCACTT 58.985 45.455 0.00 0.00 0.00 3.16
3455 3632 4.036380 TCCTACATCATACGTGTAGCAGTG 59.964 45.833 0.00 0.00 44.80 3.66
3464 3641 6.954487 TCACTTACATCCTACATCATACGT 57.046 37.500 0.00 0.00 0.00 3.57
3465 3642 8.642908 TTTTCACTTACATCCTACATCATACG 57.357 34.615 0.00 0.00 0.00 3.06
3491 3782 6.979817 CACATGACAGAAAAATGGACTTTTCA 59.020 34.615 0.00 0.00 44.36 2.69
3536 3827 8.621286 CACCGCTAGTAATTTCCTTCATAAAAT 58.379 33.333 0.00 0.00 0.00 1.82
3604 3899 2.561478 TTGTTTACTGGGCTGGTCTC 57.439 50.000 0.00 0.00 0.00 3.36
3610 3905 4.687901 AATTGCTTTTGTTTACTGGGCT 57.312 36.364 0.00 0.00 0.00 5.19
3612 3907 6.096673 ACCTAATTGCTTTTGTTTACTGGG 57.903 37.500 0.00 0.00 0.00 4.45
3632 3927 8.907829 AATGTCTATGTATATCATCAGGACCT 57.092 34.615 0.00 0.00 37.91 3.85
3647 3942 9.725019 TCTCTGTTGTCAATTTAATGTCTATGT 57.275 29.630 0.00 0.00 0.00 2.29
3661 3956 7.468631 GCCTTTGTTTCTATTCTCTGTTGTCAA 60.469 37.037 0.00 0.00 0.00 3.18
3670 3965 6.207614 AGTTCCTTGCCTTTGTTTCTATTCTC 59.792 38.462 0.00 0.00 0.00 2.87
3684 3979 1.205893 GATGACTCGAGTTCCTTGCCT 59.794 52.381 21.08 0.00 0.00 4.75
3715 5115 5.022122 TGAATTGCCCTTGTTGGATGATAA 58.978 37.500 0.00 0.00 38.35 1.75
3771 5175 4.019950 AGCATTTCAAGCTTTTTGGCCTAT 60.020 37.500 3.32 0.00 39.87 2.57
3830 5234 0.662619 TCTTGCAAGCGTGTCCTTTG 59.337 50.000 21.99 0.00 0.00 2.77
3907 5311 2.742053 TGCATAAGTTTGAACTCGAGGC 59.258 45.455 18.41 9.00 38.57 4.70
3916 5320 6.163476 ACGAAGTCTACATGCATAAGTTTGA 58.837 36.000 0.00 0.00 29.74 2.69
3922 5326 6.461092 CCCTTCTACGAAGTCTACATGCATAA 60.461 42.308 0.00 0.00 43.93 1.90
3939 5343 3.636153 AGGAAAGTCATGCCCTTCTAC 57.364 47.619 0.00 0.00 0.00 2.59
3946 5350 3.004752 ACACCATAGGAAAGTCATGCC 57.995 47.619 0.00 0.00 0.00 4.40
3952 5356 8.792830 TTCCATATACTACACCATAGGAAAGT 57.207 34.615 0.00 0.00 30.37 2.66
3953 5357 8.871125 ACTTCCATATACTACACCATAGGAAAG 58.129 37.037 0.00 0.00 32.79 2.62
3954 5358 8.792830 ACTTCCATATACTACACCATAGGAAA 57.207 34.615 0.00 0.00 32.79 3.13
3955 5359 7.453752 GGACTTCCATATACTACACCATAGGAA 59.546 40.741 0.00 0.00 35.64 3.36
3957 5361 6.724441 TGGACTTCCATATACTACACCATAGG 59.276 42.308 0.00 0.00 42.01 2.57
3960 5364 5.544176 CCTGGACTTCCATATACTACACCAT 59.456 44.000 0.00 0.00 46.46 3.55
3963 5367 6.726490 TTCCTGGACTTCCATATACTACAC 57.274 41.667 0.00 0.00 46.46 2.90
3964 5368 7.015292 GTCATTCCTGGACTTCCATATACTACA 59.985 40.741 0.00 0.00 46.46 2.74
3965 5369 7.015292 TGTCATTCCTGGACTTCCATATACTAC 59.985 40.741 0.00 0.00 46.46 2.73
3966 5370 7.073208 TGTCATTCCTGGACTTCCATATACTA 58.927 38.462 0.00 0.00 46.46 1.82
3967 5371 5.905331 TGTCATTCCTGGACTTCCATATACT 59.095 40.000 0.00 0.00 46.46 2.12
4012 5634 2.910199 AGTAGCCACATATGTGCACTG 58.090 47.619 27.27 16.02 44.34 3.66
4020 5642 7.880160 TCTGCAATTAAAAGTAGCCACATAT 57.120 32.000 0.00 0.00 0.00 1.78
4026 5648 7.031226 TCATGATCTGCAATTAAAAGTAGCC 57.969 36.000 0.00 0.00 0.00 3.93
4034 5656 7.201758 GGATGAGTGTTCATGATCTGCAATTAA 60.202 37.037 0.00 0.00 44.01 1.40
4035 5657 6.261603 GGATGAGTGTTCATGATCTGCAATTA 59.738 38.462 0.00 0.00 44.01 1.40
4036 5658 5.067413 GGATGAGTGTTCATGATCTGCAATT 59.933 40.000 0.00 0.00 44.01 2.32
4037 5659 4.579340 GGATGAGTGTTCATGATCTGCAAT 59.421 41.667 0.00 0.00 44.01 3.56
4038 5660 3.943381 GGATGAGTGTTCATGATCTGCAA 59.057 43.478 0.00 0.00 44.01 4.08
4052 5674 2.806945 TTTGCCCCTAAGGATGAGTG 57.193 50.000 0.00 0.00 38.24 3.51
4065 5687 1.799258 CGCATGGGAGCTATTTGCCC 61.799 60.000 3.11 0.29 44.23 5.36
4067 5689 0.308993 GTCGCATGGGAGCTATTTGC 59.691 55.000 13.49 0.00 43.29 3.68
4071 5693 1.346062 AGATGTCGCATGGGAGCTAT 58.654 50.000 13.49 8.13 0.00 2.97
4073 5695 0.254178 AAAGATGTCGCATGGGAGCT 59.746 50.000 13.49 8.17 0.00 4.09
4074 5696 0.379669 CAAAGATGTCGCATGGGAGC 59.620 55.000 13.49 8.80 0.00 4.70
4075 5697 1.938577 CTCAAAGATGTCGCATGGGAG 59.061 52.381 13.49 0.00 0.00 4.30
4076 5698 1.278985 ACTCAAAGATGTCGCATGGGA 59.721 47.619 8.63 8.63 0.00 4.37
4077 5699 1.742761 ACTCAAAGATGTCGCATGGG 58.257 50.000 2.76 2.76 0.00 4.00
4078 5700 2.743664 TCAACTCAAAGATGTCGCATGG 59.256 45.455 0.00 0.00 0.00 3.66
4081 5703 4.275689 ACAATTCAACTCAAAGATGTCGCA 59.724 37.500 0.00 0.00 0.00 5.10
4082 5704 4.787598 ACAATTCAACTCAAAGATGTCGC 58.212 39.130 0.00 0.00 0.00 5.19
4083 5705 6.146837 AGAGACAATTCAACTCAAAGATGTCG 59.853 38.462 0.00 0.00 40.51 4.35
4084 5706 7.172190 TGAGAGACAATTCAACTCAAAGATGTC 59.828 37.037 0.00 0.00 35.76 3.06
4085 5707 6.994496 TGAGAGACAATTCAACTCAAAGATGT 59.006 34.615 0.00 0.00 35.76 3.06
4086 5708 7.430992 TGAGAGACAATTCAACTCAAAGATG 57.569 36.000 0.00 0.00 35.76 2.90
4088 5710 6.072838 GCATGAGAGACAATTCAACTCAAAGA 60.073 38.462 0.00 0.00 39.30 2.52
4090 5712 5.334337 CGCATGAGAGACAATTCAACTCAAA 60.334 40.000 0.00 0.00 39.30 2.69
4091 5713 4.152938 CGCATGAGAGACAATTCAACTCAA 59.847 41.667 0.00 0.00 39.30 3.02
4092 5714 3.681417 CGCATGAGAGACAATTCAACTCA 59.319 43.478 0.00 0.00 39.77 3.41
4093 5715 3.928992 TCGCATGAGAGACAATTCAACTC 59.071 43.478 0.00 0.00 0.00 3.01
4095 5717 4.585364 CATCGCATGAGAGACAATTCAAC 58.415 43.478 5.15 0.00 0.00 3.18
4096 5718 3.064408 GCATCGCATGAGAGACAATTCAA 59.936 43.478 5.15 0.00 0.00 2.69
4097 5719 2.610833 GCATCGCATGAGAGACAATTCA 59.389 45.455 5.15 0.00 0.00 2.57
4098 5720 2.032204 GGCATCGCATGAGAGACAATTC 60.032 50.000 5.15 0.00 0.00 2.17
4099 5721 1.945394 GGCATCGCATGAGAGACAATT 59.055 47.619 5.15 0.00 0.00 2.32
4103 5725 0.807667 AACGGCATCGCATGAGAGAC 60.808 55.000 5.15 0.00 40.63 3.36
4104 5726 0.807275 CAACGGCATCGCATGAGAGA 60.807 55.000 5.15 0.00 40.63 3.10
4105 5727 1.640069 CAACGGCATCGCATGAGAG 59.360 57.895 5.15 0.00 40.63 3.20
4106 5728 1.815003 CCAACGGCATCGCATGAGA 60.815 57.895 0.28 0.28 40.63 3.27
4107 5729 1.647545 AACCAACGGCATCGCATGAG 61.648 55.000 0.00 0.00 40.63 2.90
4108 5730 1.673993 AACCAACGGCATCGCATGA 60.674 52.632 0.00 0.00 40.63 3.07
4111 5733 0.885150 TTACAACCAACGGCATCGCA 60.885 50.000 0.00 0.00 40.63 5.10
4113 5735 1.202132 CCATTACAACCAACGGCATCG 60.202 52.381 0.00 0.00 43.02 3.84
4114 5736 1.469079 GCCATTACAACCAACGGCATC 60.469 52.381 0.00 0.00 39.38 3.91
4116 5738 0.538516 AGCCATTACAACCAACGGCA 60.539 50.000 0.00 0.00 42.10 5.69
4117 5739 0.170339 GAGCCATTACAACCAACGGC 59.830 55.000 0.00 0.00 39.90 5.68
4118 5740 1.737793 GAGAGCCATTACAACCAACGG 59.262 52.381 0.00 0.00 0.00 4.44
4120 5742 3.428045 GCATGAGAGCCATTACAACCAAC 60.428 47.826 0.00 0.00 31.94 3.77
4121 5743 2.754552 GCATGAGAGCCATTACAACCAA 59.245 45.455 0.00 0.00 31.94 3.67
4124 5746 2.030946 GTCGCATGAGAGCCATTACAAC 59.969 50.000 0.00 0.00 31.94 3.32
4125 5747 2.279741 GTCGCATGAGAGCCATTACAA 58.720 47.619 0.00 0.00 31.94 2.41
4126 5748 1.802508 CGTCGCATGAGAGCCATTACA 60.803 52.381 0.00 0.00 31.94 2.41
4127 5749 0.855349 CGTCGCATGAGAGCCATTAC 59.145 55.000 0.00 0.00 31.94 1.89
4128 5750 0.459899 ACGTCGCATGAGAGCCATTA 59.540 50.000 0.00 0.00 31.94 1.90
4130 5752 1.227089 GACGTCGCATGAGAGCCAT 60.227 57.895 0.00 0.00 35.44 4.40
4131 5753 1.877576 AAGACGTCGCATGAGAGCCA 61.878 55.000 10.46 0.00 0.00 4.75
4132 5754 1.142778 GAAGACGTCGCATGAGAGCC 61.143 60.000 10.46 0.00 0.00 4.70
4133 5755 1.142778 GGAAGACGTCGCATGAGAGC 61.143 60.000 10.46 0.00 0.00 4.09
4135 5757 0.171231 CTGGAAGACGTCGCATGAGA 59.829 55.000 10.46 0.00 34.07 3.27
4136 5758 1.416813 GCTGGAAGACGTCGCATGAG 61.417 60.000 10.46 5.20 34.07 2.90
4138 5760 2.792290 CGCTGGAAGACGTCGCATG 61.792 63.158 10.46 2.26 34.07 4.06
4142 5764 0.800683 TTATGCGCTGGAAGACGTCG 60.801 55.000 9.73 0.00 36.20 5.12
4143 5765 1.355971 TTTATGCGCTGGAAGACGTC 58.644 50.000 9.73 7.70 36.20 4.34
4144 5766 2.024176 ATTTATGCGCTGGAAGACGT 57.976 45.000 9.73 0.00 36.20 4.34
4145 5767 2.096713 GCTATTTATGCGCTGGAAGACG 60.097 50.000 9.73 0.00 34.07 4.18
4146 5768 3.134458 AGCTATTTATGCGCTGGAAGAC 58.866 45.455 9.73 0.00 33.75 3.01
4147 5769 3.181466 TGAGCTATTTATGCGCTGGAAGA 60.181 43.478 9.73 0.00 33.47 2.87
4148 5770 3.133691 TGAGCTATTTATGCGCTGGAAG 58.866 45.455 9.73 0.00 33.47 3.46
4149 5771 3.192541 TGAGCTATTTATGCGCTGGAA 57.807 42.857 9.73 0.04 33.47 3.53
4151 5773 2.350197 GCTTGAGCTATTTATGCGCTGG 60.350 50.000 9.73 0.00 38.21 4.85
4152 5774 2.288729 TGCTTGAGCTATTTATGCGCTG 59.711 45.455 9.73 0.00 42.66 5.18
4153 5775 2.564771 TGCTTGAGCTATTTATGCGCT 58.435 42.857 9.73 0.00 42.66 5.92
4154 5776 3.002656 TCTTGCTTGAGCTATTTATGCGC 59.997 43.478 0.00 0.00 42.66 6.09
4155 5777 4.034394 TGTCTTGCTTGAGCTATTTATGCG 59.966 41.667 4.44 0.00 42.66 4.73
4157 5779 6.261118 GGTTGTCTTGCTTGAGCTATTTATG 58.739 40.000 4.44 0.00 42.66 1.90
4158 5780 5.358160 GGGTTGTCTTGCTTGAGCTATTTAT 59.642 40.000 4.44 0.00 42.66 1.40
4159 5781 4.700213 GGGTTGTCTTGCTTGAGCTATTTA 59.300 41.667 4.44 0.00 42.66 1.40
4160 5782 3.507622 GGGTTGTCTTGCTTGAGCTATTT 59.492 43.478 4.44 0.00 42.66 1.40
4162 5784 2.307098 AGGGTTGTCTTGCTTGAGCTAT 59.693 45.455 4.44 0.00 42.66 2.97
4164 5786 0.475906 AGGGTTGTCTTGCTTGAGCT 59.524 50.000 4.44 0.00 42.66 4.09
4165 5787 1.322442 AAGGGTTGTCTTGCTTGAGC 58.678 50.000 0.00 0.00 42.50 4.26
4166 5788 4.554723 CGTAAAAGGGTTGTCTTGCTTGAG 60.555 45.833 0.00 0.00 0.00 3.02
4167 5789 3.314080 CGTAAAAGGGTTGTCTTGCTTGA 59.686 43.478 0.00 0.00 0.00 3.02
4168 5790 3.628017 CGTAAAAGGGTTGTCTTGCTTG 58.372 45.455 0.00 0.00 0.00 4.01
4169 5791 2.034179 GCGTAAAAGGGTTGTCTTGCTT 59.966 45.455 0.00 0.00 0.00 3.91
4170 5792 1.607148 GCGTAAAAGGGTTGTCTTGCT 59.393 47.619 0.00 0.00 0.00 3.91
4171 5793 1.662026 CGCGTAAAAGGGTTGTCTTGC 60.662 52.381 0.00 0.00 0.00 4.01
4172 5794 1.069500 CCGCGTAAAAGGGTTGTCTTG 60.069 52.381 4.92 0.00 0.00 3.02
4173 5795 1.232119 CCGCGTAAAAGGGTTGTCTT 58.768 50.000 4.92 0.00 0.00 3.01
4174 5796 1.232621 GCCGCGTAAAAGGGTTGTCT 61.233 55.000 4.92 0.00 0.00 3.41
4175 5797 1.208358 GCCGCGTAAAAGGGTTGTC 59.792 57.895 4.92 0.00 0.00 3.18
4179 5801 0.322648 AACTAGCCGCGTAAAAGGGT 59.677 50.000 4.92 0.00 41.59 4.34
4180 5802 0.725117 CAACTAGCCGCGTAAAAGGG 59.275 55.000 4.92 0.00 0.00 3.95
4181 5803 0.725117 CCAACTAGCCGCGTAAAAGG 59.275 55.000 4.92 0.00 0.00 3.11
4182 5804 0.096454 GCCAACTAGCCGCGTAAAAG 59.904 55.000 4.92 0.00 0.00 2.27
4183 5805 0.320946 AGCCAACTAGCCGCGTAAAA 60.321 50.000 4.92 0.00 0.00 1.52
4184 5806 1.017177 CAGCCAACTAGCCGCGTAAA 61.017 55.000 4.92 0.00 0.00 2.01
4185 5807 1.447140 CAGCCAACTAGCCGCGTAA 60.447 57.895 4.92 0.00 0.00 3.18
4186 5808 2.162338 AACAGCCAACTAGCCGCGTA 62.162 55.000 4.92 0.00 0.00 4.42
4187 5809 2.162338 TAACAGCCAACTAGCCGCGT 62.162 55.000 4.92 0.00 0.00 6.01
4188 5810 1.421410 CTAACAGCCAACTAGCCGCG 61.421 60.000 0.00 0.00 0.00 6.46
4190 5812 2.094762 AACTAACAGCCAACTAGCCG 57.905 50.000 0.00 0.00 0.00 5.52
4191 5813 3.532542 CCTAACTAACAGCCAACTAGCC 58.467 50.000 0.00 0.00 0.00 3.93
4192 5814 2.937149 GCCTAACTAACAGCCAACTAGC 59.063 50.000 0.00 0.00 0.00 3.42
4193 5815 4.081642 TCAGCCTAACTAACAGCCAACTAG 60.082 45.833 0.00 0.00 0.00 2.57
4195 5817 2.637872 TCAGCCTAACTAACAGCCAACT 59.362 45.455 0.00 0.00 0.00 3.16
4196 5818 3.003480 CTCAGCCTAACTAACAGCCAAC 58.997 50.000 0.00 0.00 0.00 3.77
4197 5819 2.027192 CCTCAGCCTAACTAACAGCCAA 60.027 50.000 0.00 0.00 0.00 4.52
4198 5820 1.555075 CCTCAGCCTAACTAACAGCCA 59.445 52.381 0.00 0.00 0.00 4.75
4199 5821 1.555533 ACCTCAGCCTAACTAACAGCC 59.444 52.381 0.00 0.00 0.00 4.85
4200 5822 3.336138 AACCTCAGCCTAACTAACAGC 57.664 47.619 0.00 0.00 0.00 4.40
4201 5823 4.003648 CCAAACCTCAGCCTAACTAACAG 58.996 47.826 0.00 0.00 0.00 3.16
4203 5825 4.017177 ACCAAACCTCAGCCTAACTAAC 57.983 45.455 0.00 0.00 0.00 2.34
4204 5826 4.717279 AACCAAACCTCAGCCTAACTAA 57.283 40.909 0.00 0.00 0.00 2.24
4206 5828 3.009143 CCTAACCAAACCTCAGCCTAACT 59.991 47.826 0.00 0.00 0.00 2.24
4207 5829 3.008704 TCCTAACCAAACCTCAGCCTAAC 59.991 47.826 0.00 0.00 0.00 2.34
4208 5830 3.008704 GTCCTAACCAAACCTCAGCCTAA 59.991 47.826 0.00 0.00 0.00 2.69
4209 5831 2.570302 GTCCTAACCAAACCTCAGCCTA 59.430 50.000 0.00 0.00 0.00 3.93
4210 5832 1.351350 GTCCTAACCAAACCTCAGCCT 59.649 52.381 0.00 0.00 0.00 4.58
4211 5833 1.073284 TGTCCTAACCAAACCTCAGCC 59.927 52.381 0.00 0.00 0.00 4.85
4213 5835 3.403038 CAGTGTCCTAACCAAACCTCAG 58.597 50.000 0.00 0.00 0.00 3.35
4215 5837 2.552373 CCCAGTGTCCTAACCAAACCTC 60.552 54.545 0.00 0.00 0.00 3.85
4217 5839 1.546998 CCCCAGTGTCCTAACCAAACC 60.547 57.143 0.00 0.00 0.00 3.27
4218 5840 1.546998 CCCCCAGTGTCCTAACCAAAC 60.547 57.143 0.00 0.00 0.00 2.93
4219 5841 0.774908 CCCCCAGTGTCCTAACCAAA 59.225 55.000 0.00 0.00 0.00 3.28
4220 5842 0.402272 ACCCCCAGTGTCCTAACCAA 60.402 55.000 0.00 0.00 0.00 3.67
4221 5843 0.402272 AACCCCCAGTGTCCTAACCA 60.402 55.000 0.00 0.00 0.00 3.67
4222 5844 1.660242 TAACCCCCAGTGTCCTAACC 58.340 55.000 0.00 0.00 0.00 2.85
4223 5845 2.574824 ACATAACCCCCAGTGTCCTAAC 59.425 50.000 0.00 0.00 0.00 2.34
4224 5846 2.574369 CACATAACCCCCAGTGTCCTAA 59.426 50.000 0.00 0.00 0.00 2.69
4225 5847 2.193127 CACATAACCCCCAGTGTCCTA 58.807 52.381 0.00 0.00 0.00 2.94
4226 5848 0.991920 CACATAACCCCCAGTGTCCT 59.008 55.000 0.00 0.00 0.00 3.85
4227 5849 0.679960 GCACATAACCCCCAGTGTCC 60.680 60.000 0.00 0.00 34.59 4.02
4228 5850 0.328258 AGCACATAACCCCCAGTGTC 59.672 55.000 0.00 0.00 34.59 3.67
4229 5851 0.328258 GAGCACATAACCCCCAGTGT 59.672 55.000 0.00 0.00 34.59 3.55
4230 5852 0.620556 AGAGCACATAACCCCCAGTG 59.379 55.000 0.00 0.00 35.19 3.66
4231 5853 2.238898 GTTAGAGCACATAACCCCCAGT 59.761 50.000 0.00 0.00 0.00 4.00
4232 5854 2.505819 AGTTAGAGCACATAACCCCCAG 59.494 50.000 0.00 0.00 34.34 4.45
4233 5855 2.238646 CAGTTAGAGCACATAACCCCCA 59.761 50.000 0.00 0.00 34.34 4.96
4236 5858 3.270877 CACCAGTTAGAGCACATAACCC 58.729 50.000 0.00 0.00 34.34 4.11
4237 5859 3.270877 CCACCAGTTAGAGCACATAACC 58.729 50.000 0.00 0.00 34.34 2.85
4239 5861 2.238646 CCCCACCAGTTAGAGCACATAA 59.761 50.000 0.00 0.00 0.00 1.90
4240 5862 1.837439 CCCCACCAGTTAGAGCACATA 59.163 52.381 0.00 0.00 0.00 2.29
4241 5863 0.620556 CCCCACCAGTTAGAGCACAT 59.379 55.000 0.00 0.00 0.00 3.21
4242 5864 0.766674 ACCCCACCAGTTAGAGCACA 60.767 55.000 0.00 0.00 0.00 4.57
4243 5865 0.036294 GACCCCACCAGTTAGAGCAC 60.036 60.000 0.00 0.00 0.00 4.40
4244 5866 1.198759 GGACCCCACCAGTTAGAGCA 61.199 60.000 0.00 0.00 0.00 4.26
4245 5867 1.198759 TGGACCCCACCAGTTAGAGC 61.199 60.000 0.00 0.00 34.77 4.09
4246 5868 3.082619 TGGACCCCACCAGTTAGAG 57.917 57.895 0.00 0.00 34.77 2.43
4256 5878 4.752594 GGCCCTAGGTGGACCCCA 62.753 72.222 8.29 0.00 38.35 4.96
4258 5880 3.408853 GTGGCCCTAGGTGGACCC 61.409 72.222 8.29 0.61 38.35 4.46
4259 5881 3.782443 CGTGGCCCTAGGTGGACC 61.782 72.222 8.29 4.26 38.35 4.46
4261 5883 1.380785 CTACGTGGCCCTAGGTGGA 60.381 63.158 8.29 0.00 38.35 4.02
4262 5884 1.673808 GACTACGTGGCCCTAGGTGG 61.674 65.000 8.29 0.00 0.00 4.61
4265 5887 0.460311 CTTGACTACGTGGCCCTAGG 59.540 60.000 0.06 0.06 0.00 3.02
4266 5888 1.405821 CTCTTGACTACGTGGCCCTAG 59.594 57.143 0.00 0.00 0.00 3.02
4267 5889 1.272313 ACTCTTGACTACGTGGCCCTA 60.272 52.381 0.00 0.00 0.00 3.53
4268 5890 0.542232 ACTCTTGACTACGTGGCCCT 60.542 55.000 0.00 0.00 0.00 5.19
4269 5891 0.108756 GACTCTTGACTACGTGGCCC 60.109 60.000 0.00 0.00 0.00 5.80
4270 5892 0.601558 TGACTCTTGACTACGTGGCC 59.398 55.000 0.00 0.00 0.00 5.36
4271 5893 2.059541 GTTGACTCTTGACTACGTGGC 58.940 52.381 0.00 0.00 0.00 5.01
4272 5894 2.673833 GGTTGACTCTTGACTACGTGG 58.326 52.381 0.00 0.00 0.00 4.94
4273 5895 2.287427 ACGGTTGACTCTTGACTACGTG 60.287 50.000 0.00 0.00 0.00 4.49
4274 5896 1.952296 ACGGTTGACTCTTGACTACGT 59.048 47.619 0.00 0.00 0.00 3.57
4275 5897 2.582687 GACGGTTGACTCTTGACTACG 58.417 52.381 0.00 0.00 0.00 3.51
4278 5900 1.068741 GTGGACGGTTGACTCTTGACT 59.931 52.381 0.00 0.00 0.00 3.41
4279 5901 1.499049 GTGGACGGTTGACTCTTGAC 58.501 55.000 0.00 0.00 0.00 3.18
4282 5904 0.031721 GTCGTGGACGGTTGACTCTT 59.968 55.000 0.00 0.00 40.29 2.85
4283 5905 0.822532 AGTCGTGGACGGTTGACTCT 60.823 55.000 0.00 0.00 37.07 3.24
4284 5906 1.658673 AGTCGTGGACGGTTGACTC 59.341 57.895 0.00 0.00 37.07 3.36
4286 5908 1.728426 CGAGTCGTGGACGGTTGAC 60.728 63.158 3.82 0.00 37.67 3.18
4288 5910 1.728426 GTCGAGTCGTGGACGGTTG 60.728 63.158 13.12 0.00 37.67 3.77
4289 5911 2.641559 GTCGAGTCGTGGACGGTT 59.358 61.111 13.12 0.00 37.67 4.44
4290 5912 3.360340 GGTCGAGTCGTGGACGGT 61.360 66.667 13.12 0.00 37.67 4.83
4291 5913 4.456253 CGGTCGAGTCGTGGACGG 62.456 72.222 13.12 4.31 37.67 4.79
4293 5915 3.360340 ACCGGTCGAGTCGTGGAC 61.360 66.667 21.84 10.44 0.00 4.02
4294 5916 3.359523 CACCGGTCGAGTCGTGGA 61.360 66.667 21.84 0.00 0.00 4.02
4296 5918 2.126965 GTCACCGGTCGAGTCGTG 60.127 66.667 2.59 2.93 0.00 4.35
4297 5919 2.281345 AGTCACCGGTCGAGTCGT 60.281 61.111 2.59 0.00 0.00 4.34
4298 5920 2.176055 CAGTCACCGGTCGAGTCG 59.824 66.667 2.59 6.09 0.00 4.18
4299 5921 1.081376 CACAGTCACCGGTCGAGTC 60.081 63.158 2.59 0.00 0.00 3.36
4301 5923 1.371758 CACACAGTCACCGGTCGAG 60.372 63.158 2.59 0.00 0.00 4.04
4302 5924 1.824760 TCACACAGTCACCGGTCGA 60.825 57.895 2.59 2.87 0.00 4.20
4303 5925 1.660575 GTCACACAGTCACCGGTCG 60.661 63.158 2.59 0.00 0.00 4.79
4304 5926 1.300697 GGTCACACAGTCACCGGTC 60.301 63.158 2.59 0.00 0.00 4.79
4313 7027 2.016704 GTCGAGCACGGTCACACAG 61.017 63.158 3.11 0.00 40.21 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.