Multiple sequence alignment - TraesCS2D01G082800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G082800 chr2D 100.000 8264 0 0 1 8264 35777681 35785944 0.000000e+00 15261.0
1 TraesCS2D01G082800 chr2D 98.462 195 3 0 4382 4576 35781873 35782067 2.210000e-90 344.0
2 TraesCS2D01G082800 chr2D 98.462 195 3 0 4193 4387 35782062 35782256 2.210000e-90 344.0
3 TraesCS2D01G082800 chr2D 100.000 30 0 0 3230 3259 35780301 35780330 1.000000e-03 56.5
4 TraesCS2D01G082800 chr2D 100.000 30 0 0 2621 2650 35780910 35780939 1.000000e-03 56.5
5 TraesCS2D01G082800 chr2A 97.224 4106 90 10 2676 6771 38964322 38968413 0.000000e+00 6929.0
6 TraesCS2D01G082800 chr2A 89.965 847 79 6 2 844 38961528 38962372 0.000000e+00 1088.0
7 TraesCS2D01G082800 chr2A 90.954 807 32 17 828 1628 38962391 38963162 0.000000e+00 1048.0
8 TraesCS2D01G082800 chr2A 95.683 556 14 1 6770 7325 38968504 38969049 0.000000e+00 885.0
9 TraesCS2D01G082800 chr2A 96.507 458 12 2 1715 2172 38963193 38963646 0.000000e+00 754.0
10 TraesCS2D01G082800 chr2A 97.285 442 10 2 2165 2606 38963902 38964341 0.000000e+00 749.0
11 TraesCS2D01G082800 chr2A 90.000 400 32 3 451 844 25351046 25350649 2.060000e-140 510.0
12 TraesCS2D01G082800 chr2A 98.462 195 3 0 4382 4576 38965841 38966035 2.210000e-90 344.0
13 TraesCS2D01G082800 chr2A 98.462 195 3 0 4193 4387 38966030 38966224 2.210000e-90 344.0
14 TraesCS2D01G082800 chr2B 96.663 4105 121 8 2676 6771 58975206 58979303 0.000000e+00 6807.0
15 TraesCS2D01G082800 chr2B 92.542 1180 62 10 1003 2171 58973364 58974528 0.000000e+00 1668.0
16 TraesCS2D01G082800 chr2B 97.285 442 11 1 2165 2606 58974785 58975225 0.000000e+00 749.0
17 TraesCS2D01G082800 chr2B 94.883 469 16 4 7077 7538 58979736 58980203 0.000000e+00 726.0
18 TraesCS2D01G082800 chr2B 89.199 537 36 9 7533 8058 58981508 58982033 0.000000e+00 651.0
19 TraesCS2D01G082800 chr2B 96.605 324 9 2 6770 7092 58979394 58979716 3.390000e-148 536.0
20 TraesCS2D01G082800 chr2B 89.487 409 35 4 442 844 676742964 676743370 2.060000e-140 510.0
21 TraesCS2D01G082800 chr2B 89.461 408 33 5 451 851 767412715 767413119 2.660000e-139 507.0
22 TraesCS2D01G082800 chr2B 84.631 501 55 11 2 498 58972370 58972852 5.800000e-131 479.0
23 TraesCS2D01G082800 chr2B 97.949 195 4 0 4382 4576 58976728 58976922 1.030000e-88 339.0
24 TraesCS2D01G082800 chr2B 88.153 287 19 8 824 1097 58973130 58973414 2.220000e-85 327.0
25 TraesCS2D01G082800 chr2B 96.410 195 7 0 4193 4387 58976917 58977111 1.030000e-83 322.0
26 TraesCS2D01G082800 chr2B 100.000 30 0 0 2621 2650 58975764 58975793 1.000000e-03 56.5
27 TraesCS2D01G082800 chr6D 92.519 401 21 5 451 844 56208479 56208081 4.330000e-157 566.0
28 TraesCS2D01G082800 chr6D 93.750 48 3 0 386 433 10968056 10968103 1.150000e-08 73.1
29 TraesCS2D01G082800 chr6D 91.837 49 4 0 386 434 282092778 282092730 1.490000e-07 69.4
30 TraesCS2D01G082800 chr1A 90.299 402 31 6 450 844 36604440 36604840 3.420000e-143 520.0
31 TraesCS2D01G082800 chr5D 86.570 484 45 11 7027 7498 433390674 433391149 4.420000e-142 516.0
32 TraesCS2D01G082800 chr5D 90.066 151 14 1 7654 7804 433395259 433395408 2.350000e-45 195.0
33 TraesCS2D01G082800 chr5D 93.750 48 3 0 386 433 320062376 320062329 1.150000e-08 73.1
34 TraesCS2D01G082800 chr5D 89.091 55 5 1 386 439 535800501 535800447 5.350000e-07 67.6
35 TraesCS2D01G082800 chr1B 90.250 400 30 7 451 844 56621373 56620977 1.590000e-141 514.0
36 TraesCS2D01G082800 chr1B 95.349 43 2 0 825 867 604657902 604657944 1.490000e-07 69.4
37 TraesCS2D01G082800 chr3B 89.801 402 32 4 450 844 222147443 222147044 2.660000e-139 507.0
38 TraesCS2D01G082800 chr3B 73.043 690 165 15 5142 5819 385465317 385464637 3.000000e-54 224.0
39 TraesCS2D01G082800 chr3B 88.525 61 5 2 7888 7946 649978433 649978373 1.150000e-08 73.1
40 TraesCS2D01G082800 chr3B 97.500 40 1 0 827 866 751843974 751843935 1.490000e-07 69.4
41 TraesCS2D01G082800 chr5B 89.776 401 32 4 451 844 72093166 72093564 9.570000e-139 505.0
42 TraesCS2D01G082800 chr6B 81.941 371 56 6 2 369 156690972 156690610 3.750000e-78 303.0
43 TraesCS2D01G082800 chr6B 90.385 52 4 1 382 433 673948346 673948396 5.350000e-07 67.6
44 TraesCS2D01G082800 chr3A 72.886 686 173 8 5142 5819 387297800 387298480 3.000000e-54 224.0
45 TraesCS2D01G082800 chr3D 72.328 683 182 5 5142 5819 292028461 292027781 3.020000e-49 207.0
46 TraesCS2D01G082800 chr4B 72.414 667 155 23 5199 5846 107237209 107237865 1.420000e-42 185.0
47 TraesCS2D01G082800 chr4A 71.235 664 162 23 5202 5846 512580696 512580043 3.110000e-29 141.0
48 TraesCS2D01G082800 chr4A 93.617 47 2 1 827 872 457286140 457286094 1.490000e-07 69.4
49 TraesCS2D01G082800 chr5A 84.314 102 13 3 8142 8241 378611405 378611305 6.830000e-16 97.1
50 TraesCS2D01G082800 chr5A 100.000 38 0 0 827 864 505500772 505500809 4.140000e-08 71.3
51 TraesCS2D01G082800 chr7A 100.000 39 0 0 827 865 538852523 538852485 1.150000e-08 73.1
52 TraesCS2D01G082800 chr7A 90.566 53 4 1 379 430 417263800 417263852 1.490000e-07 69.4
53 TraesCS2D01G082800 chr1D 93.750 48 3 0 386 433 310162480 310162433 1.150000e-08 73.1
54 TraesCS2D01G082800 chr1D 93.617 47 3 0 386 432 186075582 186075536 4.140000e-08 71.3
55 TraesCS2D01G082800 chr7B 86.154 65 7 1 7884 7946 540297442 540297378 1.490000e-07 69.4
56 TraesCS2D01G082800 chr7B 90.196 51 4 1 827 876 688592705 688592755 1.930000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G082800 chr2D 35777681 35785944 8263 False 15261.000000 15261 100.000000 1 8264 1 chr2D.!!$F1 8263
1 TraesCS2D01G082800 chr2D 35780301 35782256 1955 False 200.250000 344 99.231000 2621 4576 4 chr2D.!!$F2 1955
2 TraesCS2D01G082800 chr2A 38961528 38969049 7521 False 1517.625000 6929 95.567750 2 7325 8 chr2A.!!$F1 7323
3 TraesCS2D01G082800 chr2B 58972370 58982033 9663 False 1150.954545 6807 94.029091 2 8058 11 chr2B.!!$F3 8056
4 TraesCS2D01G082800 chr3B 385464637 385465317 680 True 224.000000 224 73.043000 5142 5819 1 chr3B.!!$R2 677
5 TraesCS2D01G082800 chr3A 387297800 387298480 680 False 224.000000 224 72.886000 5142 5819 1 chr3A.!!$F1 677
6 TraesCS2D01G082800 chr3D 292027781 292028461 680 True 207.000000 207 72.328000 5142 5819 1 chr3D.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 135 0.029371 AGGGGGAGGGGGTGTATTAC 60.029 60.000 0.00 0.00 0.00 1.89 F
1135 1238 0.177373 TCTGTCGCCGCTCTACTCTA 59.823 55.000 0.00 0.00 0.00 2.43 F
1713 1822 0.031857 TGGCCACTTGTTTGAATGCG 59.968 50.000 0.00 0.00 0.00 4.73 F
2310 2686 1.812922 CCATCTGAGTCGCTGCCAC 60.813 63.158 0.00 0.00 0.00 5.01 F
2333 2709 4.623647 CGATGCCCCAAATTTTCCTTGAAT 60.624 41.667 0.00 0.00 0.00 2.57 F
4686 5074 0.249398 TGGCGAGAAGGAAGCTAACC 59.751 55.000 2.08 2.08 0.00 2.85 F
4838 5226 1.225373 TAAATGCTGCAGGATCCCCT 58.775 50.000 21.89 8.95 45.74 4.79 F
4865 5253 1.243902 GGAGATCAGCTAGGAGGACG 58.756 60.000 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 1562 0.111639 AAACATTGCAGGGGTACGGT 59.888 50.000 0.00 0.00 0.00 4.83 R
2310 2686 2.233431 TCAAGGAAAATTTGGGGCATCG 59.767 45.455 0.00 0.00 0.00 3.84 R
2618 2994 4.012374 CTGCATCAGGACCTACAAATTGT 58.988 43.478 3.43 3.43 0.00 2.71 R
4686 5074 7.046033 ACTTTCCCCTTTGTAATATACGACTG 58.954 38.462 0.00 0.00 0.00 3.51 R
4807 5195 5.448225 CCTGCAGCATTTAACACTGTAGATG 60.448 44.000 8.66 0.00 44.08 2.90 R
6050 6441 0.462581 TCTCACATGAGCGGCATTCC 60.463 55.000 0.00 0.00 41.80 3.01 R
6443 6834 0.575859 CAGTGCGCTCAATGATCTCG 59.424 55.000 9.73 0.00 40.45 4.04 R
7337 7860 1.693062 TCAAAATGCACCAACCATGCT 59.307 42.857 0.00 0.00 43.77 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.436469 TCGTGCTACGCCCGACTA 60.436 61.111 4.15 0.00 42.21 2.59
120 122 3.695825 GGTGAGGGGAGAGGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
121 123 2.041405 GTGAGGGGAGAGGGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
122 124 3.368501 TGAGGGGAGAGGGGGAGG 61.369 72.222 0.00 0.00 0.00 4.30
123 125 4.179599 GAGGGGAGAGGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
127 129 4.825679 GGAGAGGGGGAGGGGGTG 62.826 77.778 0.00 0.00 0.00 4.61
128 130 4.026357 GAGAGGGGGAGGGGGTGT 62.026 72.222 0.00 0.00 0.00 4.16
131 133 1.005690 GAGGGGGAGGGGGTGTATT 59.994 63.158 0.00 0.00 0.00 1.89
132 134 0.269782 GAGGGGGAGGGGGTGTATTA 59.730 60.000 0.00 0.00 0.00 0.98
133 135 0.029371 AGGGGGAGGGGGTGTATTAC 60.029 60.000 0.00 0.00 0.00 1.89
134 136 1.413256 GGGGGAGGGGGTGTATTACG 61.413 65.000 0.00 0.00 0.00 3.18
135 137 0.398948 GGGGAGGGGGTGTATTACGA 60.399 60.000 0.00 0.00 0.00 3.43
204 208 1.153958 GCATGCTTCCCTTGAACGC 60.154 57.895 11.37 0.00 0.00 4.84
262 266 3.051210 CCTCGCTCACACTGGACA 58.949 61.111 0.00 0.00 0.00 4.02
373 377 1.119574 ATATCAACGACGGGGGAGGG 61.120 60.000 0.00 0.00 0.00 4.30
447 451 3.621715 GTGCCCTTCGATTTAAGGTAGTG 59.378 47.826 0.38 0.00 43.94 2.74
668 672 4.269183 TGTATTCTAATGTGGCCCAACAG 58.731 43.478 0.00 0.00 32.52 3.16
669 673 3.737559 ATTCTAATGTGGCCCAACAGA 57.262 42.857 0.00 2.41 32.52 3.41
687 691 9.366216 CCCAACAGATAAAAATAGGCTAAAAAC 57.634 33.333 0.00 0.00 0.00 2.43
688 692 9.072294 CCAACAGATAAAAATAGGCTAAAAACG 57.928 33.333 0.00 0.00 0.00 3.60
689 693 8.583765 CAACAGATAAAAATAGGCTAAAAACGC 58.416 33.333 0.00 0.00 0.00 4.84
709 714 0.734889 CCAGTGCGCAAAATAGGAGG 59.265 55.000 14.00 1.16 0.00 4.30
728 733 1.748403 CAGATTAGCGGGCCTAGCA 59.252 57.895 22.10 6.42 37.01 3.49
822 827 4.513442 GCCCATATAATAATCGTGCCTCA 58.487 43.478 0.00 0.00 0.00 3.86
904 944 5.887754 AGGGGCAAATTACTAAGAAACTGA 58.112 37.500 0.00 0.00 0.00 3.41
909 949 7.078228 GGCAAATTACTAAGAAACTGACACTG 58.922 38.462 0.00 0.00 0.00 3.66
933 973 3.119096 GCCCGCTCCAAACGAGTC 61.119 66.667 0.00 0.00 41.10 3.36
934 974 2.809601 CCCGCTCCAAACGAGTCG 60.810 66.667 11.85 11.85 41.10 4.18
935 975 3.479269 CCGCTCCAAACGAGTCGC 61.479 66.667 13.59 0.00 41.10 5.19
940 980 1.606350 CTCCAAACGAGTCGCACGAC 61.606 60.000 13.59 15.08 44.86 4.34
1135 1238 0.177373 TCTGTCGCCGCTCTACTCTA 59.823 55.000 0.00 0.00 0.00 2.43
1224 1331 2.136974 TGGATGGATGGATGGATGGA 57.863 50.000 0.00 0.00 0.00 3.41
1225 1332 2.651190 TGGATGGATGGATGGATGGAT 58.349 47.619 0.00 0.00 0.00 3.41
1226 1333 2.310647 TGGATGGATGGATGGATGGATG 59.689 50.000 0.00 0.00 0.00 3.51
1227 1334 2.579400 GGATGGATGGATGGATGGATGA 59.421 50.000 0.00 0.00 0.00 2.92
1306 1413 0.322975 ATCCTATGCATGGGCGAGTC 59.677 55.000 23.60 0.00 45.35 3.36
1443 1550 4.815108 GCGGCCCCAAACCCTAGG 62.815 72.222 0.06 0.06 0.00 3.02
1455 1562 4.163458 CCAAACCCTAGGTTACTGCATCTA 59.837 45.833 8.29 0.00 46.20 1.98
1456 1563 5.116882 CAAACCCTAGGTTACTGCATCTAC 58.883 45.833 8.29 0.00 46.20 2.59
1457 1564 3.306613 ACCCTAGGTTACTGCATCTACC 58.693 50.000 8.29 0.00 27.29 3.18
1458 1565 2.296471 CCCTAGGTTACTGCATCTACCG 59.704 54.545 8.29 0.00 35.80 4.02
1459 1566 2.957006 CCTAGGTTACTGCATCTACCGT 59.043 50.000 0.00 0.00 35.80 4.83
1508 1615 3.128764 TCTCGTTTATGTGATCAGCGAGT 59.871 43.478 19.38 1.96 43.02 4.18
1603 1712 1.694696 TGTTTATTTGGGTTGTGGGGC 59.305 47.619 0.00 0.00 0.00 5.80
1643 1752 4.129148 GCTTGGAGGGCGGGGATT 62.129 66.667 0.00 0.00 0.00 3.01
1644 1753 2.124151 CTTGGAGGGCGGGGATTG 60.124 66.667 0.00 0.00 0.00 2.67
1677 1786 4.458989 TCTTACAAAACTGCAATGCCCTAG 59.541 41.667 1.53 0.00 0.00 3.02
1691 1800 4.046286 TGCCCTAGAAATCATTGTTGGT 57.954 40.909 0.00 0.00 0.00 3.67
1708 1817 1.213182 TGGTACTGGCCACTTGTTTGA 59.787 47.619 0.00 0.00 32.81 2.69
1713 1822 0.031857 TGGCCACTTGTTTGAATGCG 59.968 50.000 0.00 0.00 0.00 4.73
1718 1827 2.233355 CACTTGTTTGAATGCGCTACG 58.767 47.619 9.73 0.00 0.00 3.51
1777 1886 2.798976 TTCTGTTGGCTGTTGATTGC 57.201 45.000 0.00 0.00 0.00 3.56
1900 2014 8.893727 GTGTGCCTATGTCATAGTTTAGAAATT 58.106 33.333 16.89 0.00 0.00 1.82
1976 2090 8.936070 TGAAAGAAGGAATATGATTGCAAATG 57.064 30.769 1.71 0.00 0.00 2.32
1990 2104 5.957910 TTGCAAATGTTTTTCTTACCACG 57.042 34.783 0.00 0.00 0.00 4.94
2022 2136 4.932200 AGTAGCTGTACAATGCTTGTTCTC 59.068 41.667 14.11 1.33 42.22 2.87
2083 2197 5.933790 TGAATGAACGCATTGGTTTAGTAC 58.066 37.500 0.00 0.00 44.47 2.73
2122 2236 2.146342 GGTAATGATGATGGAGTGGCG 58.854 52.381 0.00 0.00 0.00 5.69
2310 2686 1.812922 CCATCTGAGTCGCTGCCAC 60.813 63.158 0.00 0.00 0.00 5.01
2333 2709 4.623647 CGATGCCCCAAATTTTCCTTGAAT 60.624 41.667 0.00 0.00 0.00 2.57
2534 2910 6.917477 TCTTTTGTCACTAAATCACATGCAAC 59.083 34.615 0.00 0.00 0.00 4.17
2606 2982 6.127897 GCTACAAACATTTTCTGGTGATAGCT 60.128 38.462 0.00 0.00 31.02 3.32
2607 2983 6.017400 ACAAACATTTTCTGGTGATAGCTG 57.983 37.500 0.00 0.00 0.00 4.24
2609 2985 6.435277 ACAAACATTTTCTGGTGATAGCTGAT 59.565 34.615 0.00 0.00 0.00 2.90
2611 2987 8.461222 CAAACATTTTCTGGTGATAGCTGATTA 58.539 33.333 0.00 0.00 0.00 1.75
2612 2988 8.757982 AACATTTTCTGGTGATAGCTGATTAT 57.242 30.769 0.00 0.00 0.00 1.28
2613 2989 9.851686 AACATTTTCTGGTGATAGCTGATTATA 57.148 29.630 0.00 0.00 0.00 0.98
2614 2990 9.851686 ACATTTTCTGGTGATAGCTGATTATAA 57.148 29.630 0.00 0.00 0.00 0.98
4686 5074 0.249398 TGGCGAGAAGGAAGCTAACC 59.751 55.000 2.08 2.08 0.00 2.85
4807 5195 3.158676 AGAACTCGGGTATAGAGGATGC 58.841 50.000 0.00 0.00 39.90 3.91
4838 5226 1.225373 TAAATGCTGCAGGATCCCCT 58.775 50.000 21.89 8.95 45.74 4.79
4865 5253 1.243902 GGAGATCAGCTAGGAGGACG 58.756 60.000 0.00 0.00 0.00 4.79
4925 5313 5.037385 AGCAAAAAGAAGCGAAGAAAGAAC 58.963 37.500 0.00 0.00 35.48 3.01
4961 5349 2.494471 TGCTGATTTGAATGGGAAGCAG 59.506 45.455 0.00 0.00 41.02 4.24
5194 5582 3.173151 TGAGGGATGCTAGTCTGTTTGA 58.827 45.455 0.00 0.00 0.00 2.69
5204 5592 4.574828 GCTAGTCTGTTTGAAACTGGTCAA 59.425 41.667 13.73 0.00 35.72 3.18
5240 5628 1.267806 GATAACCTTGATGGCATGCCG 59.732 52.381 30.87 18.00 40.22 5.69
5410 5798 6.015095 ACAACAGAGATATCACAAGACAGACA 60.015 38.462 5.32 0.00 0.00 3.41
5411 5799 6.596309 ACAGAGATATCACAAGACAGACAA 57.404 37.500 5.32 0.00 0.00 3.18
5444 5832 6.165577 GCATATTGTTTCATGGACAAAAGGT 58.834 36.000 16.02 6.04 40.10 3.50
5445 5833 6.650390 GCATATTGTTTCATGGACAAAAGGTT 59.350 34.615 16.02 5.77 40.10 3.50
5446 5834 7.173047 GCATATTGTTTCATGGACAAAAGGTTT 59.827 33.333 16.02 5.23 40.10 3.27
5447 5835 9.054922 CATATTGTTTCATGGACAAAAGGTTTT 57.945 29.630 16.02 4.71 40.10 2.43
5476 5867 6.765989 CGAAGGAAATATGAAGTACATCCCAA 59.234 38.462 0.00 0.00 40.07 4.12
5580 5971 1.410004 AGTCGTGGAAGTCCTGTCAA 58.590 50.000 0.00 0.00 36.82 3.18
5649 6040 8.303876 GGATTGAAGGCTTTGTCAGTTTATTTA 58.696 33.333 0.00 0.00 0.00 1.40
5650 6041 9.860898 GATTGAAGGCTTTGTCAGTTTATTTAT 57.139 29.630 0.00 0.00 0.00 1.40
5738 6129 6.005198 TGTTCCGTTTTATAGGACAAATGGT 58.995 36.000 5.99 0.00 39.29 3.55
5910 6301 1.274728 ACAGTGCAAGCAGTAGAGGAG 59.725 52.381 1.50 0.00 0.00 3.69
5913 6304 2.634940 AGTGCAAGCAGTAGAGGAGAAA 59.365 45.455 0.00 0.00 0.00 2.52
5961 6352 1.945394 CATCCTTGCAGAGAAATCCCG 59.055 52.381 0.00 0.00 0.00 5.14
5973 6364 4.660771 AGAGAAATCCCGATGGTCCTAATT 59.339 41.667 0.00 0.00 0.00 1.40
6050 6441 9.190858 CCTGATTCTGAATTCTATAACTTCGAG 57.809 37.037 7.05 0.00 0.00 4.04
6119 6510 7.746475 GCTTTATACAGTGATGTTGACAACTTC 59.254 37.037 21.45 21.45 36.43 3.01
6269 6660 9.191995 AGCTGTGGTAAATTTAAAATTCGAAAG 57.808 29.630 0.00 0.00 0.00 2.62
6332 6723 1.978455 TATGCACCGGACATGACCCC 61.978 60.000 20.33 1.42 0.00 4.95
6443 6834 0.305922 CTTGCGGATTTGAGATCGGC 59.694 55.000 8.30 8.30 42.41 5.54
6698 7089 0.260816 AGGATGCCCAATGACATGCT 59.739 50.000 4.86 4.86 39.77 3.79
6843 7326 0.250640 ACTTGCAGTGCCCTCTCTTG 60.251 55.000 13.72 0.00 0.00 3.02
6858 7341 0.478072 TCTTGCTGGTGGTGGTGAAT 59.522 50.000 0.00 0.00 0.00 2.57
6947 7431 5.420409 AGATAGTCTTTGTCGGTTTCATCC 58.580 41.667 0.00 0.00 0.00 3.51
7078 7597 5.535030 AGTTGTTCTTTACTGGGATTGGTTC 59.465 40.000 0.00 0.00 0.00 3.62
7144 7663 5.235850 TCTGTTGCATTCTTAGTACCCAA 57.764 39.130 0.00 0.00 0.00 4.12
7188 7707 1.200948 GCAGAACAGGAAGCAACATCC 59.799 52.381 0.00 0.00 37.22 3.51
7196 7715 4.018960 ACAGGAAGCAACATCCTCAACTAT 60.019 41.667 0.00 0.00 45.59 2.12
7310 7833 3.565902 GCAGATCTGTTGGTAATAAGGCC 59.434 47.826 23.38 0.00 0.00 5.19
7365 7888 9.761504 CATGGTTGGTGCATTTTGATATAATTA 57.238 29.630 0.00 0.00 0.00 1.40
7447 7973 1.241990 TTCTGGAGTAGCTGCGTCGT 61.242 55.000 0.00 0.00 0.00 4.34
7566 9402 7.095271 CCTTTTCTTGTTTTGCTTTGAAAGACA 60.095 33.333 9.48 3.62 0.00 3.41
7573 9409 7.250569 TGTTTTGCTTTGAAAGACAGACTTAG 58.749 34.615 9.48 0.00 37.93 2.18
7579 9415 5.825593 TTGAAAGACAGACTTAGGATGGT 57.174 39.130 0.00 0.00 37.93 3.55
7629 9465 3.305064 GGATCGTGTAGAGGATGAAGAGC 60.305 52.174 0.00 0.00 0.00 4.09
7703 9539 7.441157 TCAGATCATTTGTTTACTTTCGTGACT 59.559 33.333 0.00 0.00 0.00 3.41
7724 9560 9.612620 GTGACTATCTTATTGTGGAAACAAAAG 57.387 33.333 0.00 2.43 41.92 2.27
7732 9568 8.713708 TTATTGTGGAAACAAAAGATTCCCTA 57.286 30.769 2.36 0.00 41.92 3.53
7733 9569 7.610580 ATTGTGGAAACAAAAGATTCCCTAA 57.389 32.000 2.36 0.00 41.92 2.69
7796 9632 5.809001 TGTTGATGCAAGTAGAGAAATCCT 58.191 37.500 0.00 0.00 0.00 3.24
7804 9640 6.183360 TGCAAGTAGAGAAATCCTACATCCTC 60.183 42.308 0.00 0.00 39.06 3.71
7805 9641 6.183360 GCAAGTAGAGAAATCCTACATCCTCA 60.183 42.308 0.00 0.00 39.06 3.86
7806 9642 7.472663 GCAAGTAGAGAAATCCTACATCCTCAT 60.473 40.741 0.00 0.00 39.06 2.90
7807 9643 7.537596 AGTAGAGAAATCCTACATCCTCATG 57.462 40.000 0.00 0.00 39.06 3.07
7808 9644 5.226194 AGAGAAATCCTACATCCTCATGC 57.774 43.478 0.00 0.00 32.57 4.06
7809 9645 4.657504 AGAGAAATCCTACATCCTCATGCA 59.342 41.667 0.00 0.00 32.57 3.96
7816 9660 2.706339 ACATCCTCATGCACTCCTTC 57.294 50.000 0.00 0.00 32.57 3.46
7826 9670 6.211587 TCATGCACTCCTTCAATAATTTGG 57.788 37.500 0.00 0.00 33.44 3.28
7838 9682 5.505780 TCAATAATTTGGGGTCATCGACTT 58.494 37.500 0.00 0.00 33.44 3.01
7871 9715 9.315363 ACATCATATTTTACCAAACCTACCAAA 57.685 29.630 0.00 0.00 0.00 3.28
7893 9737 5.793030 ATAAGCATGTGTACTACTCCCTC 57.207 43.478 0.00 0.00 0.00 4.30
7895 9739 2.108168 GCATGTGTACTACTCCCTCCA 58.892 52.381 0.00 0.00 0.00 3.86
7896 9740 2.159085 GCATGTGTACTACTCCCTCCAC 60.159 54.545 0.00 0.00 0.00 4.02
7898 9742 2.522185 TGTGTACTACTCCCTCCACAC 58.478 52.381 0.00 0.00 37.41 3.82
7909 9754 6.688073 ACTCCCTCCACACCATAATATAAG 57.312 41.667 0.00 0.00 0.00 1.73
7959 9804 3.983044 ACGCCTTCCCATCTAATATCC 57.017 47.619 0.00 0.00 0.00 2.59
7960 9805 2.233922 ACGCCTTCCCATCTAATATCCG 59.766 50.000 0.00 0.00 0.00 4.18
7967 9812 6.462207 CCTTCCCATCTAATATCCGATAGCAG 60.462 46.154 0.00 0.00 0.00 4.24
7971 9816 5.301551 CCATCTAATATCCGATAGCAGCTCT 59.698 44.000 0.00 0.00 0.00 4.09
7972 9817 6.183360 CCATCTAATATCCGATAGCAGCTCTT 60.183 42.308 0.00 0.00 0.00 2.85
7973 9818 6.201226 TCTAATATCCGATAGCAGCTCTTG 57.799 41.667 0.00 0.00 0.00 3.02
7974 9819 3.883830 ATATCCGATAGCAGCTCTTGG 57.116 47.619 7.65 7.65 0.00 3.61
7975 9820 1.418334 ATCCGATAGCAGCTCTTGGT 58.582 50.000 12.78 0.05 41.25 3.67
7976 9821 2.067365 TCCGATAGCAGCTCTTGGTA 57.933 50.000 12.78 0.00 43.38 3.25
7977 9822 2.384828 TCCGATAGCAGCTCTTGGTAA 58.615 47.619 12.78 0.00 42.57 2.85
8003 9848 7.619302 ACAATATCAATCACCATTGTAAACCCT 59.381 33.333 0.00 0.00 39.25 4.34
8009 9854 3.900601 TCACCATTGTAAACCCTTTGCAT 59.099 39.130 0.00 0.00 35.23 3.96
8016 9861 4.929479 TGTAAACCCTTTGCATGAGGTAT 58.071 39.130 13.77 1.64 30.16 2.73
8017 9862 5.329399 TGTAAACCCTTTGCATGAGGTATT 58.671 37.500 13.77 10.75 30.16 1.89
8018 9863 5.417580 TGTAAACCCTTTGCATGAGGTATTC 59.582 40.000 13.77 4.33 30.16 1.75
8043 9888 4.155826 TCCACCGTGAAATATCAAAGCAAG 59.844 41.667 0.00 0.00 37.30 4.01
8044 9889 4.082787 CCACCGTGAAATATCAAAGCAAGT 60.083 41.667 0.00 0.00 37.30 3.16
8045 9890 5.123186 CCACCGTGAAATATCAAAGCAAGTA 59.877 40.000 0.00 0.00 37.30 2.24
8053 9898 9.330063 TGAAATATCAAAGCAAGTAGGATGTAG 57.670 33.333 0.00 0.00 30.99 2.74
8058 9903 5.486063 TCAAAGCAAGTAGGATGTAGGGTAA 59.514 40.000 0.00 0.00 0.00 2.85
8059 9904 6.013206 TCAAAGCAAGTAGGATGTAGGGTAAA 60.013 38.462 0.00 0.00 0.00 2.01
8060 9905 6.382919 AAGCAAGTAGGATGTAGGGTAAAA 57.617 37.500 0.00 0.00 0.00 1.52
8061 9906 5.742063 AGCAAGTAGGATGTAGGGTAAAAC 58.258 41.667 0.00 0.00 0.00 2.43
8062 9907 4.880120 GCAAGTAGGATGTAGGGTAAAACC 59.120 45.833 0.00 0.00 37.60 3.27
8063 9908 5.338953 GCAAGTAGGATGTAGGGTAAAACCT 60.339 44.000 0.00 0.00 44.75 3.50
8064 9909 6.718294 CAAGTAGGATGTAGGGTAAAACCTT 58.282 40.000 0.00 0.00 42.09 3.50
8065 9910 6.964876 AGTAGGATGTAGGGTAAAACCTTT 57.035 37.500 0.00 0.00 42.09 3.11
8066 9911 6.718294 AGTAGGATGTAGGGTAAAACCTTTG 58.282 40.000 0.00 0.00 42.09 2.77
8067 9912 5.594199 AGGATGTAGGGTAAAACCTTTGT 57.406 39.130 0.00 0.00 42.09 2.83
8068 9913 5.321927 AGGATGTAGGGTAAAACCTTTGTG 58.678 41.667 0.00 0.00 42.09 3.33
8069 9914 4.082408 GGATGTAGGGTAAAACCTTTGTGC 60.082 45.833 0.00 0.00 42.09 4.57
8070 9915 2.879646 TGTAGGGTAAAACCTTTGTGCG 59.120 45.455 0.00 0.00 42.09 5.34
8071 9916 2.351706 AGGGTAAAACCTTTGTGCGA 57.648 45.000 0.00 0.00 37.69 5.10
8072 9917 1.951602 AGGGTAAAACCTTTGTGCGAC 59.048 47.619 0.00 0.00 37.69 5.19
8073 9918 1.001048 GGGTAAAACCTTTGTGCGACC 60.001 52.381 0.00 0.00 38.64 4.79
8074 9919 1.951602 GGTAAAACCTTTGTGCGACCT 59.048 47.619 0.00 0.00 34.73 3.85
8075 9920 2.359848 GGTAAAACCTTTGTGCGACCTT 59.640 45.455 0.00 0.00 34.73 3.50
8076 9921 2.863401 AAAACCTTTGTGCGACCTTC 57.137 45.000 0.00 0.00 0.00 3.46
8077 9922 0.661020 AAACCTTTGTGCGACCTTCG 59.339 50.000 0.00 0.00 43.89 3.79
8086 9931 4.059136 CGACCTTCGCTTCGAGAC 57.941 61.111 0.00 0.00 37.14 3.36
8087 9932 1.502640 CGACCTTCGCTTCGAGACT 59.497 57.895 0.00 0.00 37.14 3.24
8088 9933 0.109689 CGACCTTCGCTTCGAGACTT 60.110 55.000 0.00 0.00 37.14 3.01
8089 9934 1.619983 GACCTTCGCTTCGAGACTTC 58.380 55.000 0.00 0.00 37.14 3.01
8090 9935 0.244178 ACCTTCGCTTCGAGACTTCC 59.756 55.000 0.00 0.00 37.14 3.46
8091 9936 0.243907 CCTTCGCTTCGAGACTTCCA 59.756 55.000 0.00 0.00 37.14 3.53
8092 9937 1.623359 CTTCGCTTCGAGACTTCCAG 58.377 55.000 0.00 0.00 37.14 3.86
8093 9938 0.388649 TTCGCTTCGAGACTTCCAGC 60.389 55.000 0.00 0.00 37.14 4.85
8094 9939 1.214062 CGCTTCGAGACTTCCAGCT 59.786 57.895 1.92 0.00 0.00 4.24
8095 9940 1.075425 CGCTTCGAGACTTCCAGCTG 61.075 60.000 6.78 6.78 0.00 4.24
8096 9941 1.357991 GCTTCGAGACTTCCAGCTGC 61.358 60.000 8.66 0.00 0.00 5.25
8097 9942 0.037882 CTTCGAGACTTCCAGCTGCA 60.038 55.000 8.66 0.00 0.00 4.41
8098 9943 0.319900 TTCGAGACTTCCAGCTGCAC 60.320 55.000 8.66 0.00 0.00 4.57
8099 9944 1.181741 TCGAGACTTCCAGCTGCACT 61.182 55.000 8.66 2.16 0.00 4.40
8100 9945 0.320247 CGAGACTTCCAGCTGCACTT 60.320 55.000 8.66 0.00 0.00 3.16
8101 9946 1.155042 GAGACTTCCAGCTGCACTTG 58.845 55.000 8.66 0.00 0.00 3.16
8102 9947 0.471617 AGACTTCCAGCTGCACTTGT 59.528 50.000 8.66 1.93 0.00 3.16
8103 9948 1.694150 AGACTTCCAGCTGCACTTGTA 59.306 47.619 8.66 0.00 0.00 2.41
8104 9949 2.104792 AGACTTCCAGCTGCACTTGTAA 59.895 45.455 8.66 0.00 0.00 2.41
8105 9950 2.222027 ACTTCCAGCTGCACTTGTAAC 58.778 47.619 8.66 0.00 0.00 2.50
8106 9951 1.537202 CTTCCAGCTGCACTTGTAACC 59.463 52.381 8.66 0.00 0.00 2.85
8107 9952 0.250727 TCCAGCTGCACTTGTAACCC 60.251 55.000 8.66 0.00 0.00 4.11
8108 9953 0.250901 CCAGCTGCACTTGTAACCCT 60.251 55.000 8.66 0.00 0.00 4.34
8109 9954 1.003118 CCAGCTGCACTTGTAACCCTA 59.997 52.381 8.66 0.00 0.00 3.53
8110 9955 2.076863 CAGCTGCACTTGTAACCCTAC 58.923 52.381 0.00 0.00 0.00 3.18
8111 9956 1.697432 AGCTGCACTTGTAACCCTACA 59.303 47.619 1.02 0.00 36.20 2.74
8112 9957 2.076863 GCTGCACTTGTAACCCTACAG 58.923 52.381 0.00 0.00 39.21 2.74
8113 9958 2.289444 GCTGCACTTGTAACCCTACAGA 60.289 50.000 0.00 0.00 39.21 3.41
8114 9959 3.589988 CTGCACTTGTAACCCTACAGAG 58.410 50.000 0.00 0.00 39.21 3.35
8115 9960 2.301870 TGCACTTGTAACCCTACAGAGG 59.698 50.000 0.00 0.00 39.21 3.69
8125 9970 1.418334 CCTACAGAGGGATCTGGTGG 58.582 60.000 9.85 7.17 41.76 4.61
8126 9971 1.343478 CCTACAGAGGGATCTGGTGGT 60.343 57.143 9.85 0.00 41.76 4.16
8127 9972 2.091278 CCTACAGAGGGATCTGGTGGTA 60.091 54.545 9.85 0.00 41.76 3.25
8128 9973 2.877154 ACAGAGGGATCTGGTGGTAT 57.123 50.000 9.85 0.00 41.76 2.73
8129 9974 3.136641 ACAGAGGGATCTGGTGGTATT 57.863 47.619 9.85 0.00 41.76 1.89
8130 9975 3.464828 ACAGAGGGATCTGGTGGTATTT 58.535 45.455 9.85 0.00 41.76 1.40
8131 9976 3.852578 ACAGAGGGATCTGGTGGTATTTT 59.147 43.478 9.85 0.00 41.76 1.82
8132 9977 4.202441 CAGAGGGATCTGGTGGTATTTTG 58.798 47.826 0.00 0.00 34.28 2.44
8133 9978 2.952310 GAGGGATCTGGTGGTATTTTGC 59.048 50.000 0.00 0.00 0.00 3.68
8134 9979 2.311542 AGGGATCTGGTGGTATTTTGCA 59.688 45.455 0.00 0.00 0.00 4.08
8135 9980 3.052642 AGGGATCTGGTGGTATTTTGCAT 60.053 43.478 0.00 0.00 0.00 3.96
8136 9981 3.706086 GGGATCTGGTGGTATTTTGCATT 59.294 43.478 0.00 0.00 0.00 3.56
8137 9982 4.441913 GGGATCTGGTGGTATTTTGCATTG 60.442 45.833 0.00 0.00 0.00 2.82
8138 9983 4.160252 GGATCTGGTGGTATTTTGCATTGT 59.840 41.667 0.00 0.00 0.00 2.71
8139 9984 4.782019 TCTGGTGGTATTTTGCATTGTC 57.218 40.909 0.00 0.00 0.00 3.18
8140 9985 4.148079 TCTGGTGGTATTTTGCATTGTCA 58.852 39.130 0.00 0.00 0.00 3.58
8141 9986 4.586421 TCTGGTGGTATTTTGCATTGTCAA 59.414 37.500 0.00 0.00 0.00 3.18
8142 9987 4.626042 TGGTGGTATTTTGCATTGTCAAC 58.374 39.130 0.00 0.00 0.00 3.18
8143 9988 4.343526 TGGTGGTATTTTGCATTGTCAACT 59.656 37.500 0.00 0.00 0.00 3.16
8144 9989 5.536538 TGGTGGTATTTTGCATTGTCAACTA 59.463 36.000 0.00 0.00 0.00 2.24
8145 9990 6.092748 GGTGGTATTTTGCATTGTCAACTAG 58.907 40.000 0.00 0.00 0.00 2.57
8146 9991 5.572896 GTGGTATTTTGCATTGTCAACTAGC 59.427 40.000 0.00 0.00 0.00 3.42
8147 9992 5.242615 TGGTATTTTGCATTGTCAACTAGCA 59.757 36.000 5.38 5.38 0.00 3.49
8148 9993 5.572896 GGTATTTTGCATTGTCAACTAGCAC 59.427 40.000 8.26 0.00 34.56 4.40
8149 9994 4.916983 TTTTGCATTGTCAACTAGCACT 57.083 36.364 8.26 0.00 34.56 4.40
8150 9995 4.488126 TTTGCATTGTCAACTAGCACTC 57.512 40.909 8.26 0.00 34.56 3.51
8151 9996 3.407424 TGCATTGTCAACTAGCACTCT 57.593 42.857 5.38 0.00 0.00 3.24
8152 9997 3.329386 TGCATTGTCAACTAGCACTCTC 58.671 45.455 5.38 0.00 0.00 3.20
8153 9998 3.244181 TGCATTGTCAACTAGCACTCTCA 60.244 43.478 5.38 0.00 0.00 3.27
8154 9999 3.370366 GCATTGTCAACTAGCACTCTCAG 59.630 47.826 0.00 0.00 0.00 3.35
8155 10000 3.667497 TTGTCAACTAGCACTCTCAGG 57.333 47.619 0.00 0.00 0.00 3.86
8156 10001 2.598565 TGTCAACTAGCACTCTCAGGT 58.401 47.619 0.00 0.00 0.00 4.00
8157 10002 3.763057 TGTCAACTAGCACTCTCAGGTA 58.237 45.455 0.00 0.00 0.00 3.08
8158 10003 3.506455 TGTCAACTAGCACTCTCAGGTAC 59.494 47.826 0.00 0.00 0.00 3.34
8159 10004 3.090037 TCAACTAGCACTCTCAGGTACC 58.910 50.000 2.73 2.73 0.00 3.34
8160 10005 2.826128 CAACTAGCACTCTCAGGTACCA 59.174 50.000 15.94 0.00 0.00 3.25
8161 10006 3.170991 ACTAGCACTCTCAGGTACCAA 57.829 47.619 15.94 0.13 0.00 3.67
8162 10007 3.714144 ACTAGCACTCTCAGGTACCAAT 58.286 45.455 15.94 0.00 0.00 3.16
8163 10008 4.868268 ACTAGCACTCTCAGGTACCAATA 58.132 43.478 15.94 0.00 0.00 1.90
8164 10009 5.459505 ACTAGCACTCTCAGGTACCAATAT 58.540 41.667 15.94 0.00 0.00 1.28
8165 10010 4.679373 AGCACTCTCAGGTACCAATATG 57.321 45.455 15.94 3.33 0.00 1.78
8166 10011 4.290093 AGCACTCTCAGGTACCAATATGA 58.710 43.478 15.94 8.05 0.00 2.15
8167 10012 4.343526 AGCACTCTCAGGTACCAATATGAG 59.656 45.833 18.48 18.48 40.42 2.90
8168 10013 4.502259 GCACTCTCAGGTACCAATATGAGG 60.502 50.000 22.22 16.77 39.69 3.86
8169 10014 4.651503 CACTCTCAGGTACCAATATGAGGT 59.348 45.833 22.22 17.23 43.14 3.85
8170 10015 4.896482 ACTCTCAGGTACCAATATGAGGTC 59.104 45.833 22.22 0.00 40.54 3.85
8171 10016 5.144100 CTCTCAGGTACCAATATGAGGTCT 58.856 45.833 22.22 0.00 40.54 3.85
8172 10017 4.895889 TCTCAGGTACCAATATGAGGTCTG 59.104 45.833 22.22 6.14 40.54 3.51
8173 10018 3.967326 TCAGGTACCAATATGAGGTCTGG 59.033 47.826 15.94 0.00 40.54 3.86
8174 10019 3.711704 CAGGTACCAATATGAGGTCTGGT 59.288 47.826 15.94 1.93 44.37 4.00
8175 10020 4.899457 CAGGTACCAATATGAGGTCTGGTA 59.101 45.833 15.94 0.99 42.23 3.25
8179 10024 5.772393 ACCAATATGAGGTCTGGTACAAA 57.228 39.130 0.00 0.00 40.42 2.83
8180 10025 5.745227 ACCAATATGAGGTCTGGTACAAAG 58.255 41.667 0.00 0.00 40.42 2.77
8181 10026 5.487488 ACCAATATGAGGTCTGGTACAAAGA 59.513 40.000 0.00 0.00 40.42 2.52
8182 10027 6.158695 ACCAATATGAGGTCTGGTACAAAGAT 59.841 38.462 0.00 0.00 40.42 2.40
8183 10028 7.056635 CCAATATGAGGTCTGGTACAAAGATT 58.943 38.462 0.00 0.00 38.70 2.40
8184 10029 7.012704 CCAATATGAGGTCTGGTACAAAGATTG 59.987 40.741 0.00 0.00 38.70 2.67
8185 10030 5.762179 ATGAGGTCTGGTACAAAGATTGA 57.238 39.130 0.00 0.00 38.70 2.57
8186 10031 5.560722 TGAGGTCTGGTACAAAGATTGAA 57.439 39.130 0.00 0.00 38.70 2.69
8187 10032 5.305585 TGAGGTCTGGTACAAAGATTGAAC 58.694 41.667 0.00 0.00 38.70 3.18
8188 10033 5.163248 TGAGGTCTGGTACAAAGATTGAACA 60.163 40.000 0.00 0.00 38.70 3.18
8189 10034 5.063880 AGGTCTGGTACAAAGATTGAACAC 58.936 41.667 0.00 0.00 38.70 3.32
8190 10035 4.819630 GGTCTGGTACAAAGATTGAACACA 59.180 41.667 0.00 0.00 38.70 3.72
8191 10036 5.298276 GGTCTGGTACAAAGATTGAACACAA 59.702 40.000 0.00 0.00 38.70 3.33
8192 10037 6.183360 GGTCTGGTACAAAGATTGAACACAAA 60.183 38.462 0.00 0.00 38.70 2.83
8193 10038 6.912591 GTCTGGTACAAAGATTGAACACAAAG 59.087 38.462 0.00 0.00 38.70 2.77
8194 10039 6.039270 TCTGGTACAAAGATTGAACACAAAGG 59.961 38.462 0.00 0.00 38.70 3.11
8195 10040 5.888724 TGGTACAAAGATTGAACACAAAGGA 59.111 36.000 0.00 0.00 31.92 3.36
8196 10041 6.549364 TGGTACAAAGATTGAACACAAAGGAT 59.451 34.615 0.00 0.00 31.92 3.24
8197 10042 6.863126 GGTACAAAGATTGAACACAAAGGATG 59.137 38.462 0.00 0.00 0.00 3.51
8198 10043 6.713762 ACAAAGATTGAACACAAAGGATGA 57.286 33.333 0.00 0.00 0.00 2.92
8199 10044 6.742109 ACAAAGATTGAACACAAAGGATGAG 58.258 36.000 0.00 0.00 0.00 2.90
8200 10045 5.382618 AAGATTGAACACAAAGGATGAGC 57.617 39.130 0.00 0.00 0.00 4.26
8201 10046 4.660168 AGATTGAACACAAAGGATGAGCT 58.340 39.130 0.00 0.00 0.00 4.09
8202 10047 5.809001 AGATTGAACACAAAGGATGAGCTA 58.191 37.500 0.00 0.00 0.00 3.32
8203 10048 5.879223 AGATTGAACACAAAGGATGAGCTAG 59.121 40.000 0.00 0.00 0.00 3.42
8204 10049 4.890158 TGAACACAAAGGATGAGCTAGA 57.110 40.909 0.00 0.00 0.00 2.43
8205 10050 4.825422 TGAACACAAAGGATGAGCTAGAG 58.175 43.478 0.00 0.00 0.00 2.43
8206 10051 4.284490 TGAACACAAAGGATGAGCTAGAGT 59.716 41.667 0.00 0.00 0.00 3.24
8207 10052 4.899352 ACACAAAGGATGAGCTAGAGTT 57.101 40.909 0.00 0.00 0.00 3.01
8208 10053 5.234466 ACACAAAGGATGAGCTAGAGTTT 57.766 39.130 0.00 0.00 0.00 2.66
8209 10054 5.625150 ACACAAAGGATGAGCTAGAGTTTT 58.375 37.500 0.00 0.00 0.00 2.43
8210 10055 5.471456 ACACAAAGGATGAGCTAGAGTTTTG 59.529 40.000 0.00 9.59 0.00 2.44
8211 10056 5.702670 CACAAAGGATGAGCTAGAGTTTTGA 59.297 40.000 15.29 0.00 0.00 2.69
8212 10057 5.936956 ACAAAGGATGAGCTAGAGTTTTGAG 59.063 40.000 15.29 0.00 0.00 3.02
8213 10058 6.169094 CAAAGGATGAGCTAGAGTTTTGAGA 58.831 40.000 0.00 0.00 0.00 3.27
8214 10059 6.558488 AAGGATGAGCTAGAGTTTTGAGAT 57.442 37.500 0.00 0.00 0.00 2.75
8215 10060 5.916318 AGGATGAGCTAGAGTTTTGAGATG 58.084 41.667 0.00 0.00 0.00 2.90
8216 10061 5.660417 AGGATGAGCTAGAGTTTTGAGATGA 59.340 40.000 0.00 0.00 0.00 2.92
8217 10062 5.984926 GGATGAGCTAGAGTTTTGAGATGAG 59.015 44.000 0.00 0.00 0.00 2.90
8218 10063 6.183360 GGATGAGCTAGAGTTTTGAGATGAGA 60.183 42.308 0.00 0.00 0.00 3.27
8219 10064 6.788598 TGAGCTAGAGTTTTGAGATGAGAT 57.211 37.500 0.00 0.00 0.00 2.75
8220 10065 6.571605 TGAGCTAGAGTTTTGAGATGAGATG 58.428 40.000 0.00 0.00 0.00 2.90
8221 10066 5.358922 AGCTAGAGTTTTGAGATGAGATGC 58.641 41.667 0.00 0.00 0.00 3.91
8222 10067 4.511082 GCTAGAGTTTTGAGATGAGATGCC 59.489 45.833 0.00 0.00 0.00 4.40
8223 10068 3.529533 AGAGTTTTGAGATGAGATGCCG 58.470 45.455 0.00 0.00 0.00 5.69
8224 10069 2.012673 AGTTTTGAGATGAGATGCCGC 58.987 47.619 0.00 0.00 0.00 6.53
8225 10070 2.012673 GTTTTGAGATGAGATGCCGCT 58.987 47.619 0.00 0.00 0.00 5.52
8226 10071 1.660167 TTTGAGATGAGATGCCGCTG 58.340 50.000 0.00 0.00 0.00 5.18
8227 10072 0.179065 TTGAGATGAGATGCCGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
8228 10073 1.332889 TGAGATGAGATGCCGCTGGT 61.333 55.000 0.00 0.00 0.00 4.00
8229 10074 0.879400 GAGATGAGATGCCGCTGGTG 60.879 60.000 0.00 0.00 0.00 4.17
8230 10075 1.144716 GATGAGATGCCGCTGGTGA 59.855 57.895 0.00 0.00 0.00 4.02
8231 10076 0.462581 GATGAGATGCCGCTGGTGAA 60.463 55.000 0.00 0.00 0.00 3.18
8232 10077 0.463295 ATGAGATGCCGCTGGTGAAG 60.463 55.000 0.00 0.00 0.00 3.02
8233 10078 1.219124 GAGATGCCGCTGGTGAAGA 59.781 57.895 0.00 0.00 0.00 2.87
8234 10079 0.179062 GAGATGCCGCTGGTGAAGAT 60.179 55.000 0.00 0.00 0.00 2.40
8235 10080 0.463295 AGATGCCGCTGGTGAAGATG 60.463 55.000 0.00 0.00 0.00 2.90
8236 10081 0.462581 GATGCCGCTGGTGAAGATGA 60.463 55.000 0.00 0.00 0.00 2.92
8237 10082 0.182061 ATGCCGCTGGTGAAGATGAT 59.818 50.000 0.00 0.00 0.00 2.45
8238 10083 0.745486 TGCCGCTGGTGAAGATGATG 60.745 55.000 0.00 0.00 0.00 3.07
8239 10084 0.462581 GCCGCTGGTGAAGATGATGA 60.463 55.000 0.00 0.00 0.00 2.92
8240 10085 1.813092 GCCGCTGGTGAAGATGATGAT 60.813 52.381 0.00 0.00 0.00 2.45
8241 10086 2.569059 CCGCTGGTGAAGATGATGATT 58.431 47.619 0.00 0.00 0.00 2.57
8242 10087 2.547211 CCGCTGGTGAAGATGATGATTC 59.453 50.000 0.00 0.00 0.00 2.52
8243 10088 2.547211 CGCTGGTGAAGATGATGATTCC 59.453 50.000 0.00 0.00 0.00 3.01
8244 10089 2.883386 GCTGGTGAAGATGATGATTCCC 59.117 50.000 0.00 0.00 0.00 3.97
8245 10090 3.686405 GCTGGTGAAGATGATGATTCCCA 60.686 47.826 0.00 0.00 0.00 4.37
8246 10091 4.726583 CTGGTGAAGATGATGATTCCCAT 58.273 43.478 0.00 0.00 38.43 4.00
8247 10092 4.466827 TGGTGAAGATGATGATTCCCATG 58.533 43.478 0.00 0.00 35.17 3.66
8248 10093 4.166531 TGGTGAAGATGATGATTCCCATGA 59.833 41.667 0.00 0.00 35.17 3.07
8249 10094 5.163023 TGGTGAAGATGATGATTCCCATGAT 60.163 40.000 0.00 0.00 35.17 2.45
8250 10095 5.183331 GGTGAAGATGATGATTCCCATGATG 59.817 44.000 0.00 0.00 35.17 3.07
8251 10096 6.002082 GTGAAGATGATGATTCCCATGATGA 58.998 40.000 0.00 0.00 35.17 2.92
8252 10097 6.149640 GTGAAGATGATGATTCCCATGATGAG 59.850 42.308 0.00 0.00 35.17 2.90
8253 10098 6.043938 TGAAGATGATGATTCCCATGATGAGA 59.956 38.462 0.00 0.00 35.17 3.27
8254 10099 6.056090 AGATGATGATTCCCATGATGAGAG 57.944 41.667 0.00 0.00 35.17 3.20
8255 10100 5.785940 AGATGATGATTCCCATGATGAGAGA 59.214 40.000 0.00 0.00 35.17 3.10
8256 10101 5.899631 TGATGATTCCCATGATGAGAGAA 57.100 39.130 0.00 0.00 35.17 2.87
8257 10102 5.866207 TGATGATTCCCATGATGAGAGAAG 58.134 41.667 0.00 0.00 35.17 2.85
8258 10103 5.368816 TGATGATTCCCATGATGAGAGAAGT 59.631 40.000 0.00 0.00 35.17 3.01
8259 10104 5.032327 TGATTCCCATGATGAGAGAAGTG 57.968 43.478 0.00 0.00 0.00 3.16
8260 10105 4.472470 TGATTCCCATGATGAGAGAAGTGT 59.528 41.667 0.00 0.00 0.00 3.55
8261 10106 4.916041 TTCCCATGATGAGAGAAGTGTT 57.084 40.909 0.00 0.00 0.00 3.32
8262 10107 4.212143 TCCCATGATGAGAGAAGTGTTG 57.788 45.455 0.00 0.00 0.00 3.33
8263 10108 3.054875 TCCCATGATGAGAGAAGTGTTGG 60.055 47.826 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.832135 TCGTTCCAGCACCTTCCTCT 60.832 55.000 0.00 0.00 0.00 3.69
35 36 1.144057 AGCATTTCGCCTAGTCGGG 59.856 57.895 0.00 0.00 44.04 5.14
39 40 1.679032 GGTTCCAGCATTTCGCCTAGT 60.679 52.381 0.00 0.00 44.04 2.57
42 43 2.040544 CGGTTCCAGCATTTCGCCT 61.041 57.895 0.00 0.00 44.04 5.52
105 106 3.368501 CCTCCCCCTCTCCCCTCA 61.369 72.222 0.00 0.00 0.00 3.86
114 115 0.029371 GTAATACACCCCCTCCCCCT 60.029 60.000 0.00 0.00 0.00 4.79
120 122 1.785647 GTCCTCGTAATACACCCCCT 58.214 55.000 0.00 0.00 0.00 4.79
121 123 0.386838 CGTCCTCGTAATACACCCCC 59.613 60.000 0.00 0.00 0.00 5.40
122 124 1.336125 CTCGTCCTCGTAATACACCCC 59.664 57.143 0.00 0.00 38.33 4.95
123 125 1.268948 GCTCGTCCTCGTAATACACCC 60.269 57.143 0.00 0.00 38.33 4.61
124 126 1.674962 AGCTCGTCCTCGTAATACACC 59.325 52.381 0.00 0.00 38.33 4.16
125 127 2.541178 CCAGCTCGTCCTCGTAATACAC 60.541 54.545 0.00 0.00 38.33 2.90
126 128 1.674441 CCAGCTCGTCCTCGTAATACA 59.326 52.381 0.00 0.00 38.33 2.29
127 129 1.945394 TCCAGCTCGTCCTCGTAATAC 59.055 52.381 0.00 0.00 38.33 1.89
128 130 2.336945 TCCAGCTCGTCCTCGTAATA 57.663 50.000 0.00 0.00 38.33 0.98
131 133 1.310933 GGTTCCAGCTCGTCCTCGTA 61.311 60.000 0.00 0.00 38.33 3.43
132 134 2.637383 GGTTCCAGCTCGTCCTCGT 61.637 63.158 0.00 0.00 38.33 4.18
133 135 2.182030 GGTTCCAGCTCGTCCTCG 59.818 66.667 0.00 0.00 38.55 4.63
134 136 2.182030 CGGTTCCAGCTCGTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
135 137 3.382832 CCGGTTCCAGCTCGTCCT 61.383 66.667 0.00 0.00 0.00 3.85
470 474 3.643398 GGCCGACCCAGTTATCCT 58.357 61.111 0.00 0.00 0.00 3.24
527 531 4.097863 GCCCGTTTAGCACGTGCC 62.098 66.667 35.51 19.74 45.60 5.01
651 655 4.853468 TTATCTGTTGGGCCACATTAGA 57.147 40.909 5.23 8.23 0.00 2.10
688 692 1.139520 CCTATTTTGCGCACTGGGC 59.860 57.895 11.12 11.07 41.94 5.36
689 693 0.734889 CTCCTATTTTGCGCACTGGG 59.265 55.000 11.12 9.87 0.00 4.45
690 694 0.734889 CCTCCTATTTTGCGCACTGG 59.265 55.000 11.12 8.33 0.00 4.00
709 714 1.669437 GCTAGGCCCGCTAATCTGC 60.669 63.158 0.00 0.00 0.00 4.26
804 809 5.423015 CCTGCTGAGGCACGATTATTATAT 58.577 41.667 0.00 0.00 44.28 0.86
922 962 1.659335 GTCGTGCGACTCGTTTGGA 60.659 57.895 16.33 0.00 41.57 3.53
935 975 0.875728 AACAGAGAGGACGAGTCGTG 59.124 55.000 25.31 9.27 41.37 4.35
940 980 0.179176 CGAGCAACAGAGAGGACGAG 60.179 60.000 0.00 0.00 0.00 4.18
1099 1202 2.043450 AGAGGAGAGGGCTCACCG 60.043 66.667 0.00 0.00 46.96 4.94
1107 1210 2.477176 CGGCGACAGAGAGGAGAGG 61.477 68.421 0.00 0.00 0.00 3.69
1224 1331 7.834881 AATCTAGTTGCATCCATTCATTCAT 57.165 32.000 0.00 0.00 0.00 2.57
1225 1332 7.649533 AAATCTAGTTGCATCCATTCATTCA 57.350 32.000 0.00 0.00 0.00 2.57
1226 1333 9.674824 CTAAAATCTAGTTGCATCCATTCATTC 57.325 33.333 0.00 0.00 0.00 2.67
1227 1334 9.412460 TCTAAAATCTAGTTGCATCCATTCATT 57.588 29.630 0.00 0.00 0.00 2.57
1306 1413 1.341531 CTCCTACCACGCCATAGGAAG 59.658 57.143 9.66 2.73 45.05 3.46
1443 1550 2.223900 GGGGTACGGTAGATGCAGTAAC 60.224 54.545 0.00 0.00 0.00 2.50
1455 1562 0.111639 AAACATTGCAGGGGTACGGT 59.888 50.000 0.00 0.00 0.00 4.83
1456 1563 0.525761 CAAACATTGCAGGGGTACGG 59.474 55.000 0.00 0.00 0.00 4.02
1476 1583 4.344102 TCACATAAACGAGATTAGAGGGGG 59.656 45.833 0.00 0.00 0.00 5.40
1582 1691 2.104963 GCCCCACAACCCAAATAAACAA 59.895 45.455 0.00 0.00 0.00 2.83
1634 1743 0.464916 AAATCGTACCAATCCCCGCC 60.465 55.000 0.00 0.00 0.00 6.13
1636 1745 2.914059 AGAAAATCGTACCAATCCCCG 58.086 47.619 0.00 0.00 0.00 5.73
1643 1752 6.038382 TGCAGTTTTGTAAGAAAATCGTACCA 59.962 34.615 1.92 0.00 31.69 3.25
1644 1753 6.432107 TGCAGTTTTGTAAGAAAATCGTACC 58.568 36.000 1.92 0.00 31.69 3.34
1677 1786 3.509575 TGGCCAGTACCAACAATGATTTC 59.490 43.478 0.00 0.00 36.55 2.17
1691 1800 2.295909 GCATTCAAACAAGTGGCCAGTA 59.704 45.455 15.05 0.00 0.00 2.74
1708 1817 2.047274 AGCACCACGTAGCGCATT 60.047 55.556 11.47 0.00 35.48 3.56
1713 1822 1.566018 GACAACCAGCACCACGTAGC 61.566 60.000 0.00 0.00 0.00 3.58
1718 1827 1.795170 ATTGCGACAACCAGCACCAC 61.795 55.000 0.00 0.00 43.69 4.16
1777 1886 2.226437 ACTAACCGCAGCAACATTCAAG 59.774 45.455 0.00 0.00 0.00 3.02
1976 2090 5.516090 TGCAAAGATCGTGGTAAGAAAAAC 58.484 37.500 0.00 0.00 0.00 2.43
1990 2104 5.728898 GCATTGTACAGCTACTGCAAAGATC 60.729 44.000 0.00 0.00 42.74 2.75
2022 2136 3.825014 CCAATTTCCTATGGCATCCTCTG 59.175 47.826 1.65 0.00 0.00 3.35
2045 2159 5.953777 CGTTCATTCATCATCACTAAACACG 59.046 40.000 0.00 0.00 0.00 4.49
2083 2197 2.936498 ACCATATCTCTCGGCAAAAACG 59.064 45.455 0.00 0.00 0.00 3.60
2122 2236 9.007901 ACTAGATATCTGCAGGCAAATTAAATC 57.992 33.333 15.13 0.56 0.00 2.17
2310 2686 2.233431 TCAAGGAAAATTTGGGGCATCG 59.767 45.455 0.00 0.00 0.00 3.84
2333 2709 3.811083 AGACGTGTGAAAACATGGGTTA 58.189 40.909 0.00 0.00 35.82 2.85
2534 2910 8.766000 TGTACAACACCATAGTATAGTTTGTG 57.234 34.615 13.81 3.84 0.00 3.33
2612 2988 8.682710 GCATCAGGACCTACAAATTGTTATTTA 58.317 33.333 3.17 0.00 32.75 1.40
2613 2989 7.178274 TGCATCAGGACCTACAAATTGTTATTT 59.822 33.333 3.17 0.00 34.29 1.40
2614 2990 6.663093 TGCATCAGGACCTACAAATTGTTATT 59.337 34.615 3.17 0.00 0.00 1.40
2615 2991 6.186957 TGCATCAGGACCTACAAATTGTTAT 58.813 36.000 3.17 0.00 0.00 1.89
2616 2992 5.565509 TGCATCAGGACCTACAAATTGTTA 58.434 37.500 3.17 0.00 0.00 2.41
2617 2993 4.406456 TGCATCAGGACCTACAAATTGTT 58.594 39.130 3.17 0.00 0.00 2.83
2618 2994 4.012374 CTGCATCAGGACCTACAAATTGT 58.988 43.478 3.43 3.43 0.00 2.71
2619 2995 4.012374 ACTGCATCAGGACCTACAAATTG 58.988 43.478 0.00 0.00 35.51 2.32
4686 5074 7.046033 ACTTTCCCCTTTGTAATATACGACTG 58.954 38.462 0.00 0.00 0.00 3.51
4807 5195 5.448225 CCTGCAGCATTTAACACTGTAGATG 60.448 44.000 8.66 0.00 44.08 2.90
4838 5226 2.302260 CTAGCTGATCTCCGGAGAACA 58.698 52.381 34.19 34.19 41.36 3.18
4925 5313 7.485810 TCAAATCAGCATTAGATGGACAATTG 58.514 34.615 3.24 3.24 0.00 2.32
5194 5582 1.632589 GGCCCAGATTTGACCAGTTT 58.367 50.000 0.00 0.00 0.00 2.66
5204 5592 4.420214 AGGTTATCATAAAGGGCCCAGATT 59.580 41.667 27.56 18.23 0.00 2.40
5321 5709 2.275318 GACCATTTCTCCTCTGCTTCG 58.725 52.381 0.00 0.00 0.00 3.79
5410 5798 7.601886 TCCATGAAACAATATGCGAAAACATTT 59.398 29.630 0.00 0.00 0.00 2.32
5411 5799 7.063308 GTCCATGAAACAATATGCGAAAACATT 59.937 33.333 0.00 0.00 0.00 2.71
5447 5835 9.321562 GGATGTACTTCATATTTCCTTCGTTTA 57.678 33.333 10.60 0.00 36.83 2.01
5476 5867 2.089925 AGAGCCCATACCTCACCCTTAT 60.090 50.000 0.00 0.00 0.00 1.73
5580 5971 2.744202 CGCCAGCACTAACTGAGAAATT 59.256 45.455 0.00 0.00 40.25 1.82
5738 6129 4.506625 CCAGGGACACCAACTTTCTCATTA 60.507 45.833 0.00 0.00 40.13 1.90
5973 6364 4.152647 TGCTCAGAGAAGTCACCTAAAGA 58.847 43.478 0.00 0.00 0.00 2.52
6050 6441 0.462581 TCTCACATGAGCGGCATTCC 60.463 55.000 0.00 0.00 41.80 3.01
6119 6510 2.127708 ACCCAGCCATAGAACTTAGGG 58.872 52.381 0.00 0.00 40.88 3.53
6332 6723 4.687483 GGAACAATTTCAATCTGCTGGTTG 59.313 41.667 10.15 10.15 32.80 3.77
6443 6834 0.575859 CAGTGCGCTCAATGATCTCG 59.424 55.000 9.73 0.00 40.45 4.04
6698 7089 2.892852 CAGGGTTTGAGCTTTTCCATCA 59.107 45.455 0.00 0.00 0.00 3.07
6843 7326 2.684881 CTGATAATTCACCACCACCAGC 59.315 50.000 0.00 0.00 0.00 4.85
6858 7341 8.365647 GCTAGTAGGCATTAGTTTACCTGATAA 58.634 37.037 0.00 0.00 33.60 1.75
6927 7411 4.610605 TGGATGAAACCGACAAAGACTA 57.389 40.909 0.00 0.00 0.00 2.59
7188 7707 8.504815 CAAATCCAGCATCTTATGATAGTTGAG 58.495 37.037 0.00 0.00 0.00 3.02
7196 7715 6.660521 AGTGTTTCAAATCCAGCATCTTATGA 59.339 34.615 0.00 0.00 0.00 2.15
7337 7860 1.693062 TCAAAATGCACCAACCATGCT 59.307 42.857 0.00 0.00 43.77 3.79
7478 8004 7.914871 TCGTTCATATTTGGTTTTGCTCATATG 59.085 33.333 0.00 0.00 0.00 1.78
7566 9402 3.327757 TGAAACAGCACCATCCTAAGTCT 59.672 43.478 0.00 0.00 0.00 3.24
7573 9409 3.319755 CATTGTTGAAACAGCACCATCC 58.680 45.455 0.00 0.00 40.50 3.51
7579 9415 1.412079 AGGCCATTGTTGAAACAGCA 58.588 45.000 5.01 0.00 40.50 4.41
7629 9465 1.194781 AGGTAGTGGACACTGCAGGG 61.195 60.000 16.28 16.28 44.35 4.45
7724 9560 9.403583 TGTTTATAATGGACTTGTTAGGGAATC 57.596 33.333 0.00 0.00 0.00 2.52
7796 9632 3.106827 TGAAGGAGTGCATGAGGATGTA 58.893 45.455 0.00 0.00 31.50 2.29
7804 9640 5.353938 CCCAAATTATTGAAGGAGTGCATG 58.646 41.667 0.00 0.00 38.94 4.06
7805 9641 4.406649 CCCCAAATTATTGAAGGAGTGCAT 59.593 41.667 0.00 0.00 38.94 3.96
7806 9642 3.768757 CCCCAAATTATTGAAGGAGTGCA 59.231 43.478 0.00 0.00 38.94 4.57
7807 9643 3.769300 ACCCCAAATTATTGAAGGAGTGC 59.231 43.478 5.09 0.00 38.94 4.40
7808 9644 5.016173 TGACCCCAAATTATTGAAGGAGTG 58.984 41.667 5.09 0.00 38.94 3.51
7809 9645 5.269554 TGACCCCAAATTATTGAAGGAGT 57.730 39.130 5.09 0.00 38.94 3.85
7816 9660 5.356751 TCAAGTCGATGACCCCAAATTATTG 59.643 40.000 0.00 0.00 32.97 1.90
7826 9670 2.289444 TGTTTCCTCAAGTCGATGACCC 60.289 50.000 0.00 0.00 32.18 4.46
7838 9682 8.527810 GGTTTGGTAAAATATGATGTTTCCTCA 58.472 33.333 0.00 0.00 0.00 3.86
7871 9715 4.589374 GGAGGGAGTAGTACACATGCTTAT 59.411 45.833 2.52 0.00 0.00 1.73
7956 9801 1.418334 ACCAAGAGCTGCTATCGGAT 58.582 50.000 8.48 0.00 0.00 4.18
7959 9804 3.165058 TGTTACCAAGAGCTGCTATCG 57.835 47.619 0.15 0.00 0.00 2.92
7960 9805 6.931281 TGATATTGTTACCAAGAGCTGCTATC 59.069 38.462 0.15 0.00 33.17 2.08
7967 9812 6.318648 TGGTGATTGATATTGTTACCAAGAGC 59.681 38.462 0.00 0.00 34.12 4.09
7971 9816 8.359875 ACAATGGTGATTGATATTGTTACCAA 57.640 30.769 0.00 0.00 41.49 3.67
7972 9817 7.953005 ACAATGGTGATTGATATTGTTACCA 57.047 32.000 0.00 0.00 41.49 3.25
7976 9821 8.257306 GGGTTTACAATGGTGATTGATATTGTT 58.743 33.333 6.74 0.00 41.49 2.83
7977 9822 7.619302 AGGGTTTACAATGGTGATTGATATTGT 59.381 33.333 0.00 0.00 41.49 2.71
7999 9844 2.582636 AGGAATACCTCATGCAAAGGGT 59.417 45.455 19.51 15.51 44.13 4.34
8016 9861 4.561500 TTGATATTTCACGGTGGAGGAA 57.438 40.909 8.50 0.00 0.00 3.36
8017 9862 4.513442 CTTTGATATTTCACGGTGGAGGA 58.487 43.478 8.50 0.00 0.00 3.71
8018 9863 3.065371 GCTTTGATATTTCACGGTGGAGG 59.935 47.826 8.50 0.00 0.00 4.30
8043 9888 6.373495 CACAAAGGTTTTACCCTACATCCTAC 59.627 42.308 0.00 0.00 39.75 3.18
8044 9889 6.478129 CACAAAGGTTTTACCCTACATCCTA 58.522 40.000 0.00 0.00 39.75 2.94
8045 9890 5.321927 CACAAAGGTTTTACCCTACATCCT 58.678 41.667 0.00 0.00 39.75 3.24
8053 9898 1.001048 GGTCGCACAAAGGTTTTACCC 60.001 52.381 0.00 0.00 39.75 3.69
8058 9903 0.661020 CGAAGGTCGCACAAAGGTTT 59.339 50.000 0.00 0.00 31.14 3.27
8059 9904 2.317230 CGAAGGTCGCACAAAGGTT 58.683 52.632 0.00 0.00 31.14 3.50
8060 9905 4.043168 CGAAGGTCGCACAAAGGT 57.957 55.556 0.00 0.00 31.14 3.50
8069 9914 0.109689 AAGTCTCGAAGCGAAGGTCG 60.110 55.000 0.00 0.00 43.89 4.79
8070 9915 1.619983 GAAGTCTCGAAGCGAAGGTC 58.380 55.000 0.00 0.00 37.06 3.85
8071 9916 0.244178 GGAAGTCTCGAAGCGAAGGT 59.756 55.000 0.00 0.00 44.60 3.50
8072 9917 0.243907 TGGAAGTCTCGAAGCGAAGG 59.756 55.000 0.00 0.00 34.74 3.46
8073 9918 1.623359 CTGGAAGTCTCGAAGCGAAG 58.377 55.000 0.00 0.00 34.74 3.79
8074 9919 0.388649 GCTGGAAGTCTCGAAGCGAA 60.389 55.000 0.00 0.00 32.96 4.70
8075 9920 1.213013 GCTGGAAGTCTCGAAGCGA 59.787 57.895 0.00 0.00 35.30 4.93
8076 9921 1.075425 CAGCTGGAAGTCTCGAAGCG 61.075 60.000 5.57 0.00 37.15 4.68
8077 9922 1.357991 GCAGCTGGAAGTCTCGAAGC 61.358 60.000 17.12 0.00 35.30 3.86
8078 9923 0.037882 TGCAGCTGGAAGTCTCGAAG 60.038 55.000 17.12 0.00 35.30 3.79
8079 9924 0.319900 GTGCAGCTGGAAGTCTCGAA 60.320 55.000 17.12 0.00 35.30 3.71
8080 9925 1.181741 AGTGCAGCTGGAAGTCTCGA 61.182 55.000 17.12 0.00 35.30 4.04
8081 9926 0.320247 AAGTGCAGCTGGAAGTCTCG 60.320 55.000 17.12 0.00 35.30 4.04
8082 9927 1.155042 CAAGTGCAGCTGGAAGTCTC 58.845 55.000 17.12 0.00 35.30 3.36
8083 9928 0.471617 ACAAGTGCAGCTGGAAGTCT 59.528 50.000 17.12 3.10 35.30 3.24
8084 9929 2.169832 TACAAGTGCAGCTGGAAGTC 57.830 50.000 17.12 0.30 35.30 3.01
8085 9930 2.222027 GTTACAAGTGCAGCTGGAAGT 58.778 47.619 17.12 14.35 35.30 3.01
8086 9931 1.537202 GGTTACAAGTGCAGCTGGAAG 59.463 52.381 17.12 8.89 0.00 3.46
8087 9932 1.604604 GGTTACAAGTGCAGCTGGAA 58.395 50.000 17.12 0.00 0.00 3.53
8088 9933 0.250727 GGGTTACAAGTGCAGCTGGA 60.251 55.000 17.12 10.66 0.00 3.86
8089 9934 0.250901 AGGGTTACAAGTGCAGCTGG 60.251 55.000 17.12 0.00 0.00 4.85
8090 9935 2.076863 GTAGGGTTACAAGTGCAGCTG 58.923 52.381 10.11 10.11 0.00 4.24
8091 9936 1.697432 TGTAGGGTTACAAGTGCAGCT 59.303 47.619 0.00 0.00 36.86 4.24
8092 9937 2.076863 CTGTAGGGTTACAAGTGCAGC 58.923 52.381 0.00 0.00 39.21 5.25
8093 9938 3.589988 CTCTGTAGGGTTACAAGTGCAG 58.410 50.000 0.00 0.00 39.21 4.41
8094 9939 2.301870 CCTCTGTAGGGTTACAAGTGCA 59.698 50.000 0.00 0.00 39.21 4.57
8095 9940 2.973945 CCTCTGTAGGGTTACAAGTGC 58.026 52.381 0.00 0.00 39.21 4.40
8106 9951 1.343478 ACCACCAGATCCCTCTGTAGG 60.343 57.143 2.27 5.70 46.33 3.18
8107 9952 2.166907 ACCACCAGATCCCTCTGTAG 57.833 55.000 2.27 0.00 46.33 2.74
8108 9953 3.993658 ATACCACCAGATCCCTCTGTA 57.006 47.619 2.27 0.00 46.33 2.74
8109 9954 2.877154 ATACCACCAGATCCCTCTGT 57.123 50.000 2.27 0.00 46.33 3.41
8111 9956 3.372025 GCAAAATACCACCAGATCCCTCT 60.372 47.826 0.00 0.00 0.00 3.69
8112 9957 2.952310 GCAAAATACCACCAGATCCCTC 59.048 50.000 0.00 0.00 0.00 4.30
8113 9958 2.311542 TGCAAAATACCACCAGATCCCT 59.688 45.455 0.00 0.00 0.00 4.20
8114 9959 2.733956 TGCAAAATACCACCAGATCCC 58.266 47.619 0.00 0.00 0.00 3.85
8115 9960 4.160252 ACAATGCAAAATACCACCAGATCC 59.840 41.667 0.00 0.00 0.00 3.36
8116 9961 5.105797 TGACAATGCAAAATACCACCAGATC 60.106 40.000 0.00 0.00 0.00 2.75
8117 9962 4.771577 TGACAATGCAAAATACCACCAGAT 59.228 37.500 0.00 0.00 0.00 2.90
8118 9963 4.148079 TGACAATGCAAAATACCACCAGA 58.852 39.130 0.00 0.00 0.00 3.86
8119 9964 4.517952 TGACAATGCAAAATACCACCAG 57.482 40.909 0.00 0.00 0.00 4.00
8120 9965 4.343526 AGTTGACAATGCAAAATACCACCA 59.656 37.500 0.00 0.00 0.00 4.17
8121 9966 4.881920 AGTTGACAATGCAAAATACCACC 58.118 39.130 0.00 0.00 0.00 4.61
8122 9967 5.572896 GCTAGTTGACAATGCAAAATACCAC 59.427 40.000 0.00 0.00 0.00 4.16
8123 9968 5.242615 TGCTAGTTGACAATGCAAAATACCA 59.757 36.000 9.85 0.00 0.00 3.25
8124 9969 5.572896 GTGCTAGTTGACAATGCAAAATACC 59.427 40.000 12.69 0.58 35.34 2.73
8125 9970 6.381801 AGTGCTAGTTGACAATGCAAAATAC 58.618 36.000 12.69 3.89 35.34 1.89
8126 9971 6.430925 AGAGTGCTAGTTGACAATGCAAAATA 59.569 34.615 12.69 0.00 35.34 1.40
8127 9972 5.242393 AGAGTGCTAGTTGACAATGCAAAAT 59.758 36.000 12.69 5.24 35.34 1.82
8128 9973 4.580167 AGAGTGCTAGTTGACAATGCAAAA 59.420 37.500 12.69 0.00 35.34 2.44
8129 9974 4.136796 AGAGTGCTAGTTGACAATGCAAA 58.863 39.130 12.69 0.00 35.34 3.68
8130 9975 3.743521 AGAGTGCTAGTTGACAATGCAA 58.256 40.909 12.69 0.00 35.34 4.08
8131 9976 3.244181 TGAGAGTGCTAGTTGACAATGCA 60.244 43.478 8.66 8.66 0.00 3.96
8132 9977 3.329386 TGAGAGTGCTAGTTGACAATGC 58.671 45.455 0.00 0.00 0.00 3.56
8133 9978 3.931468 CCTGAGAGTGCTAGTTGACAATG 59.069 47.826 0.00 0.00 0.00 2.82
8134 9979 3.580458 ACCTGAGAGTGCTAGTTGACAAT 59.420 43.478 0.00 0.00 0.00 2.71
8135 9980 2.965831 ACCTGAGAGTGCTAGTTGACAA 59.034 45.455 0.00 0.00 0.00 3.18
8136 9981 2.598565 ACCTGAGAGTGCTAGTTGACA 58.401 47.619 0.00 0.00 0.00 3.58
8137 9982 3.119424 GGTACCTGAGAGTGCTAGTTGAC 60.119 52.174 4.06 0.00 0.00 3.18
8138 9983 3.090037 GGTACCTGAGAGTGCTAGTTGA 58.910 50.000 4.06 0.00 0.00 3.18
8139 9984 2.826128 TGGTACCTGAGAGTGCTAGTTG 59.174 50.000 14.36 0.00 0.00 3.16
8140 9985 3.170991 TGGTACCTGAGAGTGCTAGTT 57.829 47.619 14.36 0.00 0.00 2.24
8141 9986 2.901338 TGGTACCTGAGAGTGCTAGT 57.099 50.000 14.36 0.00 0.00 2.57
8142 9987 5.536538 TCATATTGGTACCTGAGAGTGCTAG 59.463 44.000 14.36 0.00 0.00 3.42
8143 9988 5.454966 TCATATTGGTACCTGAGAGTGCTA 58.545 41.667 14.36 0.00 0.00 3.49
8144 9989 4.290093 TCATATTGGTACCTGAGAGTGCT 58.710 43.478 14.36 0.00 0.00 4.40
8145 9990 4.502259 CCTCATATTGGTACCTGAGAGTGC 60.502 50.000 23.77 0.00 37.85 4.40
8146 9991 4.651503 ACCTCATATTGGTACCTGAGAGTG 59.348 45.833 23.77 13.33 37.85 3.51
8147 9992 4.884961 ACCTCATATTGGTACCTGAGAGT 58.115 43.478 23.77 17.86 37.85 3.24
8148 9993 5.010516 CAGACCTCATATTGGTACCTGAGAG 59.989 48.000 23.77 17.38 37.85 3.20
8149 9994 4.895889 CAGACCTCATATTGGTACCTGAGA 59.104 45.833 23.77 7.82 37.85 3.27
8150 9995 4.039730 CCAGACCTCATATTGGTACCTGAG 59.960 50.000 17.89 17.89 38.03 3.35
8151 9996 3.967326 CCAGACCTCATATTGGTACCTGA 59.033 47.826 14.36 7.43 38.03 3.86
8152 9997 3.711704 ACCAGACCTCATATTGGTACCTG 59.288 47.826 14.36 2.70 41.92 4.00
8153 9998 4.008916 ACCAGACCTCATATTGGTACCT 57.991 45.455 14.36 0.00 41.92 3.08
8156 10001 6.670464 TCTTTGTACCAGACCTCATATTGGTA 59.330 38.462 0.00 0.00 43.37 3.25
8157 10002 5.487488 TCTTTGTACCAGACCTCATATTGGT 59.513 40.000 0.33 0.33 45.42 3.67
8158 10003 5.989477 TCTTTGTACCAGACCTCATATTGG 58.011 41.667 0.00 0.00 36.76 3.16
8159 10004 7.770433 TCAATCTTTGTACCAGACCTCATATTG 59.230 37.037 0.00 0.00 0.00 1.90
8160 10005 7.861629 TCAATCTTTGTACCAGACCTCATATT 58.138 34.615 0.00 0.00 0.00 1.28
8161 10006 7.437713 TCAATCTTTGTACCAGACCTCATAT 57.562 36.000 0.00 0.00 0.00 1.78
8162 10007 6.867519 TCAATCTTTGTACCAGACCTCATA 57.132 37.500 0.00 0.00 0.00 2.15
8163 10008 5.762179 TCAATCTTTGTACCAGACCTCAT 57.238 39.130 0.00 0.00 0.00 2.90
8164 10009 5.163248 TGTTCAATCTTTGTACCAGACCTCA 60.163 40.000 0.00 0.00 30.88 3.86
8165 10010 5.179555 GTGTTCAATCTTTGTACCAGACCTC 59.820 44.000 0.00 0.00 30.88 3.85
8166 10011 5.063880 GTGTTCAATCTTTGTACCAGACCT 58.936 41.667 0.00 0.00 30.88 3.85
8167 10012 4.819630 TGTGTTCAATCTTTGTACCAGACC 59.180 41.667 0.00 0.00 30.88 3.85
8168 10013 6.371809 TTGTGTTCAATCTTTGTACCAGAC 57.628 37.500 0.00 0.00 30.88 3.51
8169 10014 6.039270 CCTTTGTGTTCAATCTTTGTACCAGA 59.961 38.462 0.00 0.00 33.32 3.86
8170 10015 6.039270 TCCTTTGTGTTCAATCTTTGTACCAG 59.961 38.462 0.00 0.00 33.32 4.00
8171 10016 5.888724 TCCTTTGTGTTCAATCTTTGTACCA 59.111 36.000 0.00 0.00 33.32 3.25
8172 10017 6.385649 TCCTTTGTGTTCAATCTTTGTACC 57.614 37.500 0.00 0.00 33.32 3.34
8173 10018 7.648142 TCATCCTTTGTGTTCAATCTTTGTAC 58.352 34.615 0.00 0.00 33.32 2.90
8174 10019 7.522073 GCTCATCCTTTGTGTTCAATCTTTGTA 60.522 37.037 0.00 0.00 33.32 2.41
8175 10020 6.713762 TCATCCTTTGTGTTCAATCTTTGT 57.286 33.333 0.00 0.00 33.32 2.83
8176 10021 5.632347 GCTCATCCTTTGTGTTCAATCTTTG 59.368 40.000 0.00 0.00 33.32 2.77
8177 10022 5.537674 AGCTCATCCTTTGTGTTCAATCTTT 59.462 36.000 0.00 0.00 33.32 2.52
8178 10023 5.075493 AGCTCATCCTTTGTGTTCAATCTT 58.925 37.500 0.00 0.00 33.32 2.40
8179 10024 4.660168 AGCTCATCCTTTGTGTTCAATCT 58.340 39.130 0.00 0.00 33.32 2.40
8180 10025 5.877012 TCTAGCTCATCCTTTGTGTTCAATC 59.123 40.000 0.00 0.00 33.32 2.67
8181 10026 5.809001 TCTAGCTCATCCTTTGTGTTCAAT 58.191 37.500 0.00 0.00 33.32 2.57
8182 10027 5.221722 ACTCTAGCTCATCCTTTGTGTTCAA 60.222 40.000 0.00 0.00 0.00 2.69
8183 10028 4.284490 ACTCTAGCTCATCCTTTGTGTTCA 59.716 41.667 0.00 0.00 0.00 3.18
8184 10029 4.826556 ACTCTAGCTCATCCTTTGTGTTC 58.173 43.478 0.00 0.00 0.00 3.18
8185 10030 4.899352 ACTCTAGCTCATCCTTTGTGTT 57.101 40.909 0.00 0.00 0.00 3.32
8186 10031 4.899352 AACTCTAGCTCATCCTTTGTGT 57.101 40.909 0.00 0.00 0.00 3.72
8187 10032 5.702670 TCAAAACTCTAGCTCATCCTTTGTG 59.297 40.000 0.00 0.00 0.00 3.33
8188 10033 5.869579 TCAAAACTCTAGCTCATCCTTTGT 58.130 37.500 0.00 0.00 0.00 2.83
8189 10034 6.169094 TCTCAAAACTCTAGCTCATCCTTTG 58.831 40.000 0.00 0.00 0.00 2.77
8190 10035 6.365970 TCTCAAAACTCTAGCTCATCCTTT 57.634 37.500 0.00 0.00 0.00 3.11
8191 10036 6.155910 TCATCTCAAAACTCTAGCTCATCCTT 59.844 38.462 0.00 0.00 0.00 3.36
8192 10037 5.660417 TCATCTCAAAACTCTAGCTCATCCT 59.340 40.000 0.00 0.00 0.00 3.24
8193 10038 5.911752 TCATCTCAAAACTCTAGCTCATCC 58.088 41.667 0.00 0.00 0.00 3.51
8194 10039 6.804677 TCTCATCTCAAAACTCTAGCTCATC 58.195 40.000 0.00 0.00 0.00 2.92
8195 10040 6.788598 TCTCATCTCAAAACTCTAGCTCAT 57.211 37.500 0.00 0.00 0.00 2.90
8196 10041 6.571605 CATCTCATCTCAAAACTCTAGCTCA 58.428 40.000 0.00 0.00 0.00 4.26
8197 10042 5.463061 GCATCTCATCTCAAAACTCTAGCTC 59.537 44.000 0.00 0.00 0.00 4.09
8198 10043 5.358922 GCATCTCATCTCAAAACTCTAGCT 58.641 41.667 0.00 0.00 0.00 3.32
8199 10044 4.511082 GGCATCTCATCTCAAAACTCTAGC 59.489 45.833 0.00 0.00 0.00 3.42
8200 10045 4.744137 CGGCATCTCATCTCAAAACTCTAG 59.256 45.833 0.00 0.00 0.00 2.43
8201 10046 4.686972 CGGCATCTCATCTCAAAACTCTA 58.313 43.478 0.00 0.00 0.00 2.43
8202 10047 3.529533 CGGCATCTCATCTCAAAACTCT 58.470 45.455 0.00 0.00 0.00 3.24
8203 10048 2.031437 GCGGCATCTCATCTCAAAACTC 59.969 50.000 0.00 0.00 0.00 3.01
8204 10049 2.012673 GCGGCATCTCATCTCAAAACT 58.987 47.619 0.00 0.00 0.00 2.66
8205 10050 2.012673 AGCGGCATCTCATCTCAAAAC 58.987 47.619 1.45 0.00 0.00 2.43
8206 10051 2.011947 CAGCGGCATCTCATCTCAAAA 58.988 47.619 1.45 0.00 0.00 2.44
8207 10052 1.660167 CAGCGGCATCTCATCTCAAA 58.340 50.000 1.45 0.00 0.00 2.69
8208 10053 0.179065 CCAGCGGCATCTCATCTCAA 60.179 55.000 1.45 0.00 0.00 3.02
8209 10054 1.332889 ACCAGCGGCATCTCATCTCA 61.333 55.000 1.45 0.00 0.00 3.27
8210 10055 0.879400 CACCAGCGGCATCTCATCTC 60.879 60.000 1.45 0.00 0.00 2.75
8211 10056 1.145598 CACCAGCGGCATCTCATCT 59.854 57.895 1.45 0.00 0.00 2.90
8212 10057 0.462581 TTCACCAGCGGCATCTCATC 60.463 55.000 1.45 0.00 0.00 2.92
8213 10058 0.463295 CTTCACCAGCGGCATCTCAT 60.463 55.000 1.45 0.00 0.00 2.90
8214 10059 1.078918 CTTCACCAGCGGCATCTCA 60.079 57.895 1.45 0.00 0.00 3.27
8215 10060 0.179062 ATCTTCACCAGCGGCATCTC 60.179 55.000 1.45 0.00 0.00 2.75
8216 10061 0.463295 CATCTTCACCAGCGGCATCT 60.463 55.000 1.45 0.00 0.00 2.90
8217 10062 0.462581 TCATCTTCACCAGCGGCATC 60.463 55.000 1.45 0.00 0.00 3.91
8218 10063 0.182061 ATCATCTTCACCAGCGGCAT 59.818 50.000 1.45 0.00 0.00 4.40
8219 10064 0.745486 CATCATCTTCACCAGCGGCA 60.745 55.000 1.45 0.00 0.00 5.69
8220 10065 0.462581 TCATCATCTTCACCAGCGGC 60.463 55.000 0.00 0.00 0.00 6.53
8221 10066 2.251409 ATCATCATCTTCACCAGCGG 57.749 50.000 0.00 0.00 0.00 5.52
8222 10067 2.547211 GGAATCATCATCTTCACCAGCG 59.453 50.000 0.00 0.00 0.00 5.18
8223 10068 2.883386 GGGAATCATCATCTTCACCAGC 59.117 50.000 0.00 0.00 0.00 4.85
8224 10069 4.160642 TGGGAATCATCATCTTCACCAG 57.839 45.455 0.00 0.00 0.00 4.00
8225 10070 4.166531 TCATGGGAATCATCATCTTCACCA 59.833 41.667 0.00 0.00 32.92 4.17
8226 10071 4.722220 TCATGGGAATCATCATCTTCACC 58.278 43.478 0.00 0.00 32.92 4.02
8227 10072 6.002082 TCATCATGGGAATCATCATCTTCAC 58.998 40.000 0.00 0.00 32.92 3.18
8228 10073 6.043938 TCTCATCATGGGAATCATCATCTTCA 59.956 38.462 0.00 0.00 32.92 3.02
8229 10074 6.473758 TCTCATCATGGGAATCATCATCTTC 58.526 40.000 0.00 0.00 32.92 2.87
8230 10075 6.272558 TCTCTCATCATGGGAATCATCATCTT 59.727 38.462 0.00 0.00 32.92 2.40
8231 10076 5.785940 TCTCTCATCATGGGAATCATCATCT 59.214 40.000 0.00 0.00 32.92 2.90
8232 10077 6.051179 TCTCTCATCATGGGAATCATCATC 57.949 41.667 0.00 0.00 32.92 2.92
8233 10078 6.044520 ACTTCTCTCATCATGGGAATCATCAT 59.955 38.462 0.00 0.00 32.92 2.45
8234 10079 5.368816 ACTTCTCTCATCATGGGAATCATCA 59.631 40.000 0.00 0.00 32.92 3.07
8235 10080 5.701750 CACTTCTCTCATCATGGGAATCATC 59.298 44.000 0.00 0.00 32.92 2.92
8236 10081 5.132312 ACACTTCTCTCATCATGGGAATCAT 59.868 40.000 0.00 0.00 36.31 2.45
8237 10082 4.472470 ACACTTCTCTCATCATGGGAATCA 59.528 41.667 0.00 0.00 0.00 2.57
8238 10083 5.033589 ACACTTCTCTCATCATGGGAATC 57.966 43.478 0.00 0.00 0.00 2.52
8239 10084 5.191426 CAACACTTCTCTCATCATGGGAAT 58.809 41.667 0.00 0.00 0.00 3.01
8240 10085 4.566278 CCAACACTTCTCTCATCATGGGAA 60.566 45.833 0.00 0.00 0.00 3.97
8241 10086 3.054875 CCAACACTTCTCTCATCATGGGA 60.055 47.826 0.00 0.00 0.00 4.37
8242 10087 3.276857 CCAACACTTCTCTCATCATGGG 58.723 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.