Multiple sequence alignment - TraesCS2D01G082500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G082500 chr2D 100.000 2708 0 0 1 2708 35638077 35640784 0.000000e+00 5001.0
1 TraesCS2D01G082500 chr2D 81.476 1274 123 67 601 1822 35563982 35565194 0.000000e+00 941.0
2 TraesCS2D01G082500 chr2D 81.744 975 109 32 993 1908 35531828 35532792 0.000000e+00 750.0
3 TraesCS2D01G082500 chr2D 90.741 540 38 8 2176 2708 35668316 35668850 0.000000e+00 710.0
4 TraesCS2D01G082500 chr2D 85.654 711 61 24 997 1679 35677847 35678544 0.000000e+00 710.0
5 TraesCS2D01G082500 chr2D 84.691 307 40 4 2168 2469 35534848 35535152 1.580000e-77 300.0
6 TraesCS2D01G082500 chr2D 80.140 428 52 16 2174 2581 42064553 42064139 3.410000e-74 289.0
7 TraesCS2D01G082500 chr2D 83.946 299 37 5 2175 2464 35565585 35565881 2.660000e-70 276.0
8 TraesCS2D01G082500 chr2D 88.182 220 15 6 1044 1254 42076260 42076043 4.480000e-63 252.0
9 TraesCS2D01G082500 chr2D 86.538 208 13 7 709 910 35677525 35677723 5.870000e-52 215.0
10 TraesCS2D01G082500 chr2D 90.164 122 12 0 2587 2708 42061295 42061174 2.790000e-35 159.0
11 TraesCS2D01G082500 chr2D 74.429 219 32 12 2384 2581 42061539 42061324 3.740000e-09 73.1
12 TraesCS2D01G082500 chr2B 82.893 1023 104 38 575 1562 58791110 58792096 0.000000e+00 854.0
13 TraesCS2D01G082500 chr2B 86.552 699 60 19 993 1669 58826200 58826886 0.000000e+00 739.0
14 TraesCS2D01G082500 chr2B 90.200 551 37 9 2167 2708 58792677 58793219 0.000000e+00 702.0
15 TraesCS2D01G082500 chr2B 82.633 714 89 23 993 1678 58689428 58690134 1.390000e-167 599.0
16 TraesCS2D01G082500 chr2B 83.535 413 54 11 2176 2580 58775005 58775411 9.160000e-100 374.0
17 TraesCS2D01G082500 chr2B 89.547 287 22 3 1000 1279 58773405 58773690 9.220000e-95 357.0
18 TraesCS2D01G082500 chr2B 85.152 330 39 5 1350 1673 58773802 58774127 2.010000e-86 329.0
19 TraesCS2D01G082500 chr2B 79.398 432 65 11 2174 2585 58692555 58692982 1.590000e-72 283.0
20 TraesCS2D01G082500 chr2B 85.240 271 23 8 679 938 58825932 58826196 2.070000e-66 263.0
21 TraesCS2D01G082500 chr2B 81.818 253 23 11 1696 1929 58792352 58792600 9.900000e-45 191.0
22 TraesCS2D01G082500 chr2B 90.909 121 11 0 1558 1678 58792175 58792295 2.160000e-36 163.0
23 TraesCS2D01G082500 chr2B 95.506 89 4 0 2037 2125 58792597 58792685 2.810000e-30 143.0
24 TraesCS2D01G082500 chr2B 90.476 84 5 3 263 344 614246219 614246137 1.030000e-19 108.0
25 TraesCS2D01G082500 chr2A 87.536 698 58 19 993 1677 38812152 38812833 0.000000e+00 780.0
26 TraesCS2D01G082500 chr2A 86.192 717 56 24 993 1679 38908630 38909333 0.000000e+00 736.0
27 TraesCS2D01G082500 chr2A 81.946 925 97 40 993 1880 38755034 38755925 0.000000e+00 719.0
28 TraesCS2D01G082500 chr2A 90.741 540 36 10 2176 2708 38814584 38815116 0.000000e+00 708.0
29 TraesCS2D01G082500 chr2A 84.817 573 48 19 1002 1562 38878970 38879515 8.530000e-150 540.0
30 TraesCS2D01G082500 chr2A 83.871 372 34 11 569 925 38908246 38908606 5.590000e-87 331.0
31 TraesCS2D01G082500 chr2A 88.060 268 23 3 1864 2125 38814323 38814587 2.620000e-80 309.0
32 TraesCS2D01G082500 chr2A 81.432 377 50 9 563 925 38878568 38878938 9.490000e-75 291.0
33 TraesCS2D01G082500 chr2A 80.000 370 40 20 1559 1911 38879598 38879950 2.690000e-60 243.0
34 TraesCS2D01G082500 chr2A 89.062 128 14 0 2581 2708 38888914 38889041 2.790000e-35 159.0
35 TraesCS2D01G082500 chr2A 87.179 117 11 2 563 675 38754653 38754769 2.190000e-26 130.0
36 TraesCS2D01G082500 chr2A 88.182 110 9 2 570 675 38811752 38811861 7.870000e-26 128.0
37 TraesCS2D01G082500 chr2A 89.286 84 7 2 263 344 326245513 326245596 1.330000e-18 104.0
38 TraesCS2D01G082500 chr2A 93.182 44 3 0 189 232 750587839 750587796 6.260000e-07 65.8
39 TraesCS2D01G082500 chr2A 93.182 44 3 0 189 232 750626299 750626256 6.260000e-07 65.8
40 TraesCS2D01G082500 chr2A 93.182 44 3 0 189 232 750738743 750738786 6.260000e-07 65.8
41 TraesCS2D01G082500 chr7D 91.765 85 4 3 263 346 46767918 46768000 6.130000e-22 115.0
42 TraesCS2D01G082500 chr7D 85.577 104 7 8 242 343 606706586 606706489 4.770000e-18 102.0
43 TraesCS2D01G082500 chr7D 85.294 68 7 2 63 130 72172900 72172836 1.740000e-07 67.6
44 TraesCS2D01G082500 chr7D 85.965 57 2 4 97 149 299026211 299026265 3.770000e-04 56.5
45 TraesCS2D01G082500 chr3A 80.000 160 23 9 189 344 12160040 12159886 2.850000e-20 110.0
46 TraesCS2D01G082500 chr3A 100.000 28 0 0 359 386 9931133 9931106 5.000000e-03 52.8
47 TraesCS2D01G082500 chr3B 90.476 84 5 3 263 344 457574124 457574042 1.030000e-19 108.0
48 TraesCS2D01G082500 chr3B 90.476 84 5 3 263 344 519860799 519860717 1.030000e-19 108.0
49 TraesCS2D01G082500 chr3B 92.105 38 3 0 360 397 133828003 133828040 1.000000e-03 54.7
50 TraesCS2D01G082500 chr3B 100.000 29 0 0 102 130 716510076 716510048 1.000000e-03 54.7
51 TraesCS2D01G082500 chr3B 100.000 29 0 0 102 130 716574311 716574283 1.000000e-03 54.7
52 TraesCS2D01G082500 chr6D 89.535 86 6 3 263 346 446549407 446549491 3.690000e-19 106.0
53 TraesCS2D01G082500 chrUn 87.912 91 6 5 256 344 92702055 92702142 4.770000e-18 102.0
54 TraesCS2D01G082500 chr3D 84.286 70 8 3 82 149 604604673 604604741 6.260000e-07 65.8
55 TraesCS2D01G082500 chr3D 94.872 39 2 0 359 397 612526986 612526948 8.100000e-06 62.1
56 TraesCS2D01G082500 chr6B 82.857 70 10 2 61 130 579212970 579212903 8.100000e-06 62.1
57 TraesCS2D01G082500 chr7A 90.698 43 4 0 189 231 124856391 124856433 1.050000e-04 58.4
58 TraesCS2D01G082500 chr7A 81.250 80 6 6 74 149 140185309 140185235 3.770000e-04 56.5
59 TraesCS2D01G082500 chr4A 85.714 56 4 3 97 149 15399033 15399087 3.770000e-04 56.5
60 TraesCS2D01G082500 chr4A 87.755 49 2 3 103 149 330519004 330518958 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G082500 chr2D 35638077 35640784 2707 False 5001.000000 5001 100.00000 1 2708 1 chr2D.!!$F1 2707
1 TraesCS2D01G082500 chr2D 35668316 35668850 534 False 710.000000 710 90.74100 2176 2708 1 chr2D.!!$F2 532
2 TraesCS2D01G082500 chr2D 35563982 35565881 1899 False 608.500000 941 82.71100 601 2464 2 chr2D.!!$F4 1863
3 TraesCS2D01G082500 chr2D 35531828 35535152 3324 False 525.000000 750 83.21750 993 2469 2 chr2D.!!$F3 1476
4 TraesCS2D01G082500 chr2D 35677525 35678544 1019 False 462.500000 710 86.09600 709 1679 2 chr2D.!!$F5 970
5 TraesCS2D01G082500 chr2B 58825932 58826886 954 False 501.000000 739 85.89600 679 1669 2 chr2B.!!$F4 990
6 TraesCS2D01G082500 chr2B 58689428 58692982 3554 False 441.000000 599 81.01550 993 2585 2 chr2B.!!$F1 1592
7 TraesCS2D01G082500 chr2B 58791110 58793219 2109 False 410.600000 854 88.26520 575 2708 5 chr2B.!!$F3 2133
8 TraesCS2D01G082500 chr2B 58773405 58775411 2006 False 353.333333 374 86.07800 1000 2580 3 chr2B.!!$F2 1580
9 TraesCS2D01G082500 chr2A 38908246 38909333 1087 False 533.500000 736 85.03150 569 1679 2 chr2A.!!$F7 1110
10 TraesCS2D01G082500 chr2A 38811752 38815116 3364 False 481.250000 780 88.62975 570 2708 4 chr2A.!!$F5 2138
11 TraesCS2D01G082500 chr2A 38754653 38755925 1272 False 424.500000 719 84.56250 563 1880 2 chr2A.!!$F4 1317
12 TraesCS2D01G082500 chr2A 38878568 38879950 1382 False 358.000000 540 82.08300 563 1911 3 chr2A.!!$F6 1348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 1105 0.385751 CGCCGATCTCTGTGGTACAT 59.614 55.0 0.0 0.0 44.52 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2686 7703 0.179037 ATGCGGTCTGACCATCCATG 60.179 55.0 25.42 9.87 38.47 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.551734 AACTTTTTATAGTCCAACTAAGTTCGT 57.448 29.630 0.00 0.00 33.89 3.85
40 41 8.530269 AGTCCAACTAAGTTCGTATAAGTTTG 57.470 34.615 0.00 0.00 0.00 2.93
41 42 8.146412 AGTCCAACTAAGTTCGTATAAGTTTGT 58.854 33.333 0.00 0.00 0.00 2.83
42 43 8.768019 GTCCAACTAAGTTCGTATAAGTTTGTT 58.232 33.333 0.00 0.00 31.90 2.83
43 44 8.981647 TCCAACTAAGTTCGTATAAGTTTGTTC 58.018 33.333 0.00 0.00 30.25 3.18
44 45 8.225777 CCAACTAAGTTCGTATAAGTTTGTTCC 58.774 37.037 0.00 0.00 30.25 3.62
45 46 8.767085 CAACTAAGTTCGTATAAGTTTGTTCCA 58.233 33.333 0.00 0.00 30.25 3.53
46 47 8.530269 ACTAAGTTCGTATAAGTTTGTTCCAG 57.470 34.615 0.00 0.00 0.00 3.86
47 48 6.796705 AAGTTCGTATAAGTTTGTTCCAGG 57.203 37.500 0.00 0.00 0.00 4.45
48 49 6.105397 AGTTCGTATAAGTTTGTTCCAGGA 57.895 37.500 0.00 0.00 0.00 3.86
49 50 6.708285 AGTTCGTATAAGTTTGTTCCAGGAT 58.292 36.000 0.00 0.00 0.00 3.24
50 51 6.594159 AGTTCGTATAAGTTTGTTCCAGGATG 59.406 38.462 0.00 0.00 0.00 3.51
51 52 4.873827 TCGTATAAGTTTGTTCCAGGATGC 59.126 41.667 0.00 0.00 31.97 3.91
52 53 4.634004 CGTATAAGTTTGTTCCAGGATGCA 59.366 41.667 0.00 0.00 31.97 3.96
53 54 5.296780 CGTATAAGTTTGTTCCAGGATGCAT 59.703 40.000 0.00 0.00 31.97 3.96
54 55 5.841957 ATAAGTTTGTTCCAGGATGCATC 57.158 39.130 18.81 18.81 31.97 3.91
55 56 3.446442 AGTTTGTTCCAGGATGCATCT 57.554 42.857 25.28 9.51 31.97 2.90
56 57 4.574674 AGTTTGTTCCAGGATGCATCTA 57.425 40.909 25.28 7.02 31.97 1.98
57 58 4.922206 AGTTTGTTCCAGGATGCATCTAA 58.078 39.130 25.28 12.27 31.97 2.10
58 59 4.702131 AGTTTGTTCCAGGATGCATCTAAC 59.298 41.667 25.28 21.42 31.97 2.34
59 60 3.998913 TGTTCCAGGATGCATCTAACA 57.001 42.857 25.28 23.28 31.97 2.41
60 61 4.299586 TGTTCCAGGATGCATCTAACAA 57.700 40.909 25.28 11.26 31.97 2.83
61 62 4.858850 TGTTCCAGGATGCATCTAACAAT 58.141 39.130 25.28 3.36 31.97 2.71
62 63 6.000246 TGTTCCAGGATGCATCTAACAATA 58.000 37.500 25.28 9.77 31.97 1.90
63 64 6.604171 TGTTCCAGGATGCATCTAACAATAT 58.396 36.000 25.28 0.38 31.97 1.28
64 65 7.062322 TGTTCCAGGATGCATCTAACAATATT 58.938 34.615 25.28 0.00 31.97 1.28
65 66 7.013559 TGTTCCAGGATGCATCTAACAATATTG 59.986 37.037 25.28 14.01 31.97 1.90
66 67 6.840527 TCCAGGATGCATCTAACAATATTGA 58.159 36.000 25.28 0.00 31.97 2.57
67 68 7.464273 TCCAGGATGCATCTAACAATATTGAT 58.536 34.615 25.28 12.82 31.97 2.57
68 69 7.946219 TCCAGGATGCATCTAACAATATTGATT 59.054 33.333 25.28 13.80 31.97 2.57
69 70 8.582437 CCAGGATGCATCTAACAATATTGATTT 58.418 33.333 25.28 9.25 31.97 2.17
70 71 9.406828 CAGGATGCATCTAACAATATTGATTTG 57.593 33.333 25.28 12.42 0.00 2.32
71 72 8.086522 AGGATGCATCTAACAATATTGATTTGC 58.913 33.333 25.28 19.50 0.00 3.68
72 73 8.086522 GGATGCATCTAACAATATTGATTTGCT 58.913 33.333 25.28 11.59 0.00 3.91
113 114 6.512342 TTTTTCTTCGGTAAACTTGGTCAA 57.488 33.333 0.00 0.00 0.00 3.18
114 115 6.512342 TTTTCTTCGGTAAACTTGGTCAAA 57.488 33.333 0.00 0.00 0.00 2.69
115 116 5.488645 TTCTTCGGTAAACTTGGTCAAAC 57.511 39.130 0.00 0.00 0.00 2.93
116 117 4.773013 TCTTCGGTAAACTTGGTCAAACT 58.227 39.130 0.00 0.00 0.00 2.66
117 118 5.187687 TCTTCGGTAAACTTGGTCAAACTT 58.812 37.500 0.00 0.00 0.00 2.66
118 119 5.648960 TCTTCGGTAAACTTGGTCAAACTTT 59.351 36.000 0.00 0.00 0.00 2.66
119 120 6.822676 TCTTCGGTAAACTTGGTCAAACTTTA 59.177 34.615 0.00 0.00 0.00 1.85
120 121 6.362210 TCGGTAAACTTGGTCAAACTTTAC 57.638 37.500 11.46 11.46 0.00 2.01
121 122 5.879223 TCGGTAAACTTGGTCAAACTTTACA 59.121 36.000 16.84 4.46 31.55 2.41
122 123 6.373774 TCGGTAAACTTGGTCAAACTTTACAA 59.626 34.615 16.84 0.00 31.55 2.41
123 124 7.028361 CGGTAAACTTGGTCAAACTTTACAAA 58.972 34.615 16.84 0.00 31.55 2.83
124 125 7.703197 CGGTAAACTTGGTCAAACTTTACAAAT 59.297 33.333 16.84 0.00 31.55 2.32
125 126 9.373603 GGTAAACTTGGTCAAACTTTACAAATT 57.626 29.630 16.84 0.00 31.55 1.82
129 130 9.495572 AACTTGGTCAAACTTTACAAATTTTGA 57.504 25.926 15.81 13.20 41.90 2.69
130 131 9.150348 ACTTGGTCAAACTTTACAAATTTTGAG 57.850 29.630 15.81 5.59 43.52 3.02
190 191 9.969001 ATAGATAGAGTAGTACTTCTCCAATCC 57.031 37.037 24.11 13.30 30.56 3.01
191 192 7.817440 AGATAGAGTAGTACTTCTCCAATCCA 58.183 38.462 24.11 9.58 30.56 3.41
192 193 8.452868 AGATAGAGTAGTACTTCTCCAATCCAT 58.547 37.037 24.11 13.46 30.56 3.41
193 194 9.742144 GATAGAGTAGTACTTCTCCAATCCATA 57.258 37.037 21.87 9.48 0.00 2.74
195 196 8.472007 AGAGTAGTACTTCTCCAATCCATAAG 57.528 38.462 21.87 0.00 0.00 1.73
196 197 8.062536 AGAGTAGTACTTCTCCAATCCATAAGT 58.937 37.037 21.87 0.90 34.86 2.24
197 198 8.611051 AGTAGTACTTCTCCAATCCATAAGTT 57.389 34.615 0.00 0.00 32.85 2.66
198 199 9.710818 AGTAGTACTTCTCCAATCCATAAGTTA 57.289 33.333 0.00 0.00 32.85 2.24
199 200 9.968870 GTAGTACTTCTCCAATCCATAAGTTAG 57.031 37.037 0.00 0.00 32.85 2.34
200 201 8.611051 AGTACTTCTCCAATCCATAAGTTAGT 57.389 34.615 0.00 0.00 32.85 2.24
201 202 8.478877 AGTACTTCTCCAATCCATAAGTTAGTG 58.521 37.037 0.00 0.00 32.85 2.74
202 203 6.116126 ACTTCTCCAATCCATAAGTTAGTGC 58.884 40.000 0.00 0.00 0.00 4.40
203 204 5.692115 TCTCCAATCCATAAGTTAGTGCA 57.308 39.130 0.00 0.00 0.00 4.57
204 205 6.252599 TCTCCAATCCATAAGTTAGTGCAT 57.747 37.500 0.00 0.00 0.00 3.96
205 206 7.373617 TCTCCAATCCATAAGTTAGTGCATA 57.626 36.000 0.00 0.00 0.00 3.14
206 207 7.977818 TCTCCAATCCATAAGTTAGTGCATAT 58.022 34.615 0.00 0.00 0.00 1.78
207 208 9.100197 TCTCCAATCCATAAGTTAGTGCATATA 57.900 33.333 0.00 0.00 0.00 0.86
208 209 9.896645 CTCCAATCCATAAGTTAGTGCATATAT 57.103 33.333 0.00 0.00 0.00 0.86
235 236 9.651913 ATTTTCTAAAAAGTCAAACTTTGCTGA 57.348 25.926 5.88 2.80 46.78 4.26
236 237 8.460831 TTTCTAAAAAGTCAAACTTTGCTGAC 57.539 30.769 5.88 0.00 46.78 3.51
242 243 3.695816 GTCAAACTTTGCTGACTTGGAC 58.304 45.455 0.00 0.00 39.11 4.02
243 244 2.687935 TCAAACTTTGCTGACTTGGACC 59.312 45.455 0.00 0.00 0.00 4.46
244 245 2.426738 CAAACTTTGCTGACTTGGACCA 59.573 45.455 0.00 0.00 0.00 4.02
245 246 2.435372 ACTTTGCTGACTTGGACCAA 57.565 45.000 6.76 6.76 0.00 3.67
246 247 2.949447 ACTTTGCTGACTTGGACCAAT 58.051 42.857 7.54 0.00 0.00 3.16
247 248 2.887152 ACTTTGCTGACTTGGACCAATC 59.113 45.455 7.54 8.32 0.00 2.67
248 249 2.957402 TTGCTGACTTGGACCAATCT 57.043 45.000 7.54 0.00 0.00 2.40
249 250 4.202461 ACTTTGCTGACTTGGACCAATCTA 60.202 41.667 7.54 0.00 0.00 1.98
250 251 4.574674 TTGCTGACTTGGACCAATCTAT 57.425 40.909 7.54 0.00 0.00 1.98
251 252 4.574674 TGCTGACTTGGACCAATCTATT 57.425 40.909 7.54 0.00 0.00 1.73
252 253 4.264253 TGCTGACTTGGACCAATCTATTG 58.736 43.478 7.54 0.00 37.52 1.90
253 254 4.019411 TGCTGACTTGGACCAATCTATTGA 60.019 41.667 7.54 0.00 40.14 2.57
254 255 4.333926 GCTGACTTGGACCAATCTATTGAC 59.666 45.833 7.54 0.00 40.14 3.18
255 256 4.503910 TGACTTGGACCAATCTATTGACG 58.496 43.478 7.54 0.00 40.14 4.35
256 257 4.221924 TGACTTGGACCAATCTATTGACGA 59.778 41.667 7.54 0.00 40.14 4.20
257 258 5.160607 ACTTGGACCAATCTATTGACGAA 57.839 39.130 7.54 2.07 40.14 3.85
258 259 5.745227 ACTTGGACCAATCTATTGACGAAT 58.255 37.500 7.54 0.00 40.14 3.34
259 260 5.817816 ACTTGGACCAATCTATTGACGAATC 59.182 40.000 7.54 0.00 40.14 2.52
260 261 5.614324 TGGACCAATCTATTGACGAATCT 57.386 39.130 4.25 0.00 40.14 2.40
261 262 6.724893 TGGACCAATCTATTGACGAATCTA 57.275 37.500 4.25 0.00 40.14 1.98
262 263 7.119709 TGGACCAATCTATTGACGAATCTAA 57.880 36.000 4.25 0.00 40.14 2.10
263 264 7.735917 TGGACCAATCTATTGACGAATCTAAT 58.264 34.615 4.25 0.00 40.14 1.73
264 265 7.657354 TGGACCAATCTATTGACGAATCTAATG 59.343 37.037 4.25 0.00 40.14 1.90
265 266 7.872993 GGACCAATCTATTGACGAATCTAATGA 59.127 37.037 4.25 0.00 40.14 2.57
266 267 9.261180 GACCAATCTATTGACGAATCTAATGAA 57.739 33.333 4.25 0.00 40.14 2.57
267 268 9.613428 ACCAATCTATTGACGAATCTAATGAAA 57.387 29.630 4.25 0.00 40.14 2.69
268 269 9.869844 CCAATCTATTGACGAATCTAATGAAAC 57.130 33.333 4.25 0.00 40.14 2.78
275 276 9.823647 ATTGACGAATCTAATGAAACTACATCT 57.176 29.630 0.00 0.00 0.00 2.90
276 277 9.653287 TTGACGAATCTAATGAAACTACATCTT 57.347 29.630 0.00 0.00 0.00 2.40
304 305 9.571816 TGACAATCTAATCATATATGTTTGGCA 57.428 29.630 16.12 13.66 0.00 4.92
314 315 9.970553 ATCATATATGTTTGGCATTCTAGATGT 57.029 29.630 12.42 0.00 38.94 3.06
341 342 8.893563 AATATATTTTCCCTCAAACTTGGTCA 57.106 30.769 0.00 0.00 0.00 4.02
342 343 8.893563 ATATATTTTCCCTCAAACTTGGTCAA 57.106 30.769 0.00 0.00 0.00 3.18
343 344 5.948742 ATTTTCCCTCAAACTTGGTCAAA 57.051 34.783 0.00 0.00 0.00 2.69
344 345 5.746990 TTTTCCCTCAAACTTGGTCAAAA 57.253 34.783 0.00 0.00 0.00 2.44
345 346 5.948742 TTTCCCTCAAACTTGGTCAAAAT 57.051 34.783 0.00 0.00 0.00 1.82
346 347 7.425224 TTTTCCCTCAAACTTGGTCAAAATA 57.575 32.000 0.00 0.00 0.00 1.40
347 348 6.648879 TTCCCTCAAACTTGGTCAAAATAG 57.351 37.500 0.00 0.00 0.00 1.73
348 349 5.701224 TCCCTCAAACTTGGTCAAAATAGT 58.299 37.500 0.00 0.00 0.00 2.12
349 350 6.843752 TCCCTCAAACTTGGTCAAAATAGTA 58.156 36.000 0.00 0.00 0.00 1.82
350 351 6.940298 TCCCTCAAACTTGGTCAAAATAGTAG 59.060 38.462 0.00 0.00 0.00 2.57
351 352 6.940298 CCCTCAAACTTGGTCAAAATAGTAGA 59.060 38.462 0.00 0.00 0.00 2.59
352 353 7.447238 CCCTCAAACTTGGTCAAAATAGTAGAA 59.553 37.037 0.00 0.00 0.00 2.10
353 354 8.507249 CCTCAAACTTGGTCAAAATAGTAGAAG 58.493 37.037 0.00 0.00 0.00 2.85
354 355 9.273016 CTCAAACTTGGTCAAAATAGTAGAAGA 57.727 33.333 0.00 0.00 0.00 2.87
355 356 9.052759 TCAAACTTGGTCAAAATAGTAGAAGAC 57.947 33.333 0.00 0.00 0.00 3.01
356 357 8.836413 CAAACTTGGTCAAAATAGTAGAAGACA 58.164 33.333 0.00 0.00 0.00 3.41
357 358 8.974060 AACTTGGTCAAAATAGTAGAAGACAA 57.026 30.769 0.00 0.00 0.00 3.18
358 359 9.574516 AACTTGGTCAAAATAGTAGAAGACAAT 57.425 29.630 0.00 0.00 0.00 2.71
359 360 9.220767 ACTTGGTCAAAATAGTAGAAGACAATC 57.779 33.333 0.00 0.00 0.00 2.67
360 361 8.561738 TTGGTCAAAATAGTAGAAGACAATCC 57.438 34.615 0.00 0.00 0.00 3.01
361 362 7.685481 TGGTCAAAATAGTAGAAGACAATCCA 58.315 34.615 0.00 0.00 0.00 3.41
362 363 8.160765 TGGTCAAAATAGTAGAAGACAATCCAA 58.839 33.333 0.00 0.00 0.00 3.53
363 364 9.010029 GGTCAAAATAGTAGAAGACAATCCAAA 57.990 33.333 0.00 0.00 0.00 3.28
364 365 9.827411 GTCAAAATAGTAGAAGACAATCCAAAC 57.173 33.333 0.00 0.00 0.00 2.93
365 366 9.567776 TCAAAATAGTAGAAGACAATCCAAACA 57.432 29.630 0.00 0.00 0.00 2.83
395 396 6.963049 AAATTACATCGAGAACACTACACC 57.037 37.500 0.00 0.00 0.00 4.16
396 397 5.654603 ATTACATCGAGAACACTACACCA 57.345 39.130 0.00 0.00 0.00 4.17
397 398 5.654603 TTACATCGAGAACACTACACCAT 57.345 39.130 0.00 0.00 0.00 3.55
398 399 6.762702 TTACATCGAGAACACTACACCATA 57.237 37.500 0.00 0.00 0.00 2.74
399 400 5.250235 ACATCGAGAACACTACACCATAG 57.750 43.478 0.00 0.00 0.00 2.23
400 401 4.948004 ACATCGAGAACACTACACCATAGA 59.052 41.667 0.00 0.00 0.00 1.98
401 402 5.066634 ACATCGAGAACACTACACCATAGAG 59.933 44.000 0.00 0.00 0.00 2.43
402 403 4.840271 TCGAGAACACTACACCATAGAGA 58.160 43.478 0.00 0.00 0.00 3.10
403 404 4.634883 TCGAGAACACTACACCATAGAGAC 59.365 45.833 0.00 0.00 0.00 3.36
404 405 4.395231 CGAGAACACTACACCATAGAGACA 59.605 45.833 0.00 0.00 0.00 3.41
405 406 5.066634 CGAGAACACTACACCATAGAGACAT 59.933 44.000 0.00 0.00 0.00 3.06
406 407 6.260271 CGAGAACACTACACCATAGAGACATA 59.740 42.308 0.00 0.00 0.00 2.29
407 408 7.041030 CGAGAACACTACACCATAGAGACATAT 60.041 40.741 0.00 0.00 0.00 1.78
408 409 8.540507 AGAACACTACACCATAGAGACATATT 57.459 34.615 0.00 0.00 0.00 1.28
409 410 8.982723 AGAACACTACACCATAGAGACATATTT 58.017 33.333 0.00 0.00 0.00 1.40
419 420 9.797642 ACCATAGAGACATATTTATGAAATGCA 57.202 29.630 4.63 0.00 37.15 3.96
426 427 9.236006 AGACATATTTATGAAATGCATAGACCC 57.764 33.333 0.00 0.00 40.40 4.46
427 428 8.938801 ACATATTTATGAAATGCATAGACCCA 57.061 30.769 0.00 0.00 40.40 4.51
428 429 9.365906 ACATATTTATGAAATGCATAGACCCAA 57.634 29.630 0.00 0.00 40.40 4.12
437 438 9.585369 TGAAATGCATAGACCCAATATTTATCA 57.415 29.630 0.00 0.00 0.00 2.15
441 442 8.759481 TGCATAGACCCAATATTTATCAAACA 57.241 30.769 0.00 0.00 0.00 2.83
442 443 9.194972 TGCATAGACCCAATATTTATCAAACAA 57.805 29.630 0.00 0.00 0.00 2.83
447 448 8.318412 AGACCCAATATTTATCAAACAAAACCC 58.682 33.333 0.00 0.00 0.00 4.11
448 449 8.213489 ACCCAATATTTATCAAACAAAACCCT 57.787 30.769 0.00 0.00 0.00 4.34
449 450 9.327731 ACCCAATATTTATCAAACAAAACCCTA 57.672 29.630 0.00 0.00 0.00 3.53
450 451 9.594478 CCCAATATTTATCAAACAAAACCCTAC 57.406 33.333 0.00 0.00 0.00 3.18
456 457 8.934507 TTTATCAAACAAAACCCTACAAACTG 57.065 30.769 0.00 0.00 0.00 3.16
457 458 4.749976 TCAAACAAAACCCTACAAACTGC 58.250 39.130 0.00 0.00 0.00 4.40
458 459 3.812156 AACAAAACCCTACAAACTGCC 57.188 42.857 0.00 0.00 0.00 4.85
459 460 2.036387 ACAAAACCCTACAAACTGCCC 58.964 47.619 0.00 0.00 0.00 5.36
460 461 2.316108 CAAAACCCTACAAACTGCCCT 58.684 47.619 0.00 0.00 0.00 5.19
461 462 2.287977 AAACCCTACAAACTGCCCTC 57.712 50.000 0.00 0.00 0.00 4.30
462 463 1.145571 AACCCTACAAACTGCCCTCA 58.854 50.000 0.00 0.00 0.00 3.86
463 464 1.145571 ACCCTACAAACTGCCCTCAA 58.854 50.000 0.00 0.00 0.00 3.02
464 465 1.497286 ACCCTACAAACTGCCCTCAAA 59.503 47.619 0.00 0.00 0.00 2.69
465 466 1.886542 CCCTACAAACTGCCCTCAAAC 59.113 52.381 0.00 0.00 0.00 2.93
466 467 2.582052 CCTACAAACTGCCCTCAAACA 58.418 47.619 0.00 0.00 0.00 2.83
467 468 3.157087 CCTACAAACTGCCCTCAAACAT 58.843 45.455 0.00 0.00 0.00 2.71
468 469 3.057315 CCTACAAACTGCCCTCAAACATG 60.057 47.826 0.00 0.00 0.00 3.21
469 470 2.387757 ACAAACTGCCCTCAAACATGT 58.612 42.857 0.00 0.00 0.00 3.21
470 471 3.561143 ACAAACTGCCCTCAAACATGTA 58.439 40.909 0.00 0.00 0.00 2.29
471 472 3.317993 ACAAACTGCCCTCAAACATGTAC 59.682 43.478 0.00 0.00 0.00 2.90
472 473 3.508845 AACTGCCCTCAAACATGTACT 57.491 42.857 0.00 0.00 0.00 2.73
473 474 4.634012 AACTGCCCTCAAACATGTACTA 57.366 40.909 0.00 0.00 0.00 1.82
474 475 3.939066 ACTGCCCTCAAACATGTACTAC 58.061 45.455 0.00 0.00 0.00 2.73
475 476 3.326588 ACTGCCCTCAAACATGTACTACA 59.673 43.478 0.00 0.00 0.00 2.74
476 477 3.670625 TGCCCTCAAACATGTACTACAC 58.329 45.455 0.00 0.00 0.00 2.90
477 478 3.007635 GCCCTCAAACATGTACTACACC 58.992 50.000 0.00 0.00 0.00 4.16
478 479 3.606687 CCCTCAAACATGTACTACACCC 58.393 50.000 0.00 0.00 0.00 4.61
479 480 3.263425 CCCTCAAACATGTACTACACCCT 59.737 47.826 0.00 0.00 0.00 4.34
480 481 4.504858 CCTCAAACATGTACTACACCCTC 58.495 47.826 0.00 0.00 0.00 4.30
481 482 4.223032 CCTCAAACATGTACTACACCCTCT 59.777 45.833 0.00 0.00 0.00 3.69
482 483 5.421056 CCTCAAACATGTACTACACCCTCTA 59.579 44.000 0.00 0.00 0.00 2.43
483 484 6.098409 CCTCAAACATGTACTACACCCTCTAT 59.902 42.308 0.00 0.00 0.00 1.98
484 485 7.364762 CCTCAAACATGTACTACACCCTCTATT 60.365 40.741 0.00 0.00 0.00 1.73
485 486 7.553334 TCAAACATGTACTACACCCTCTATTC 58.447 38.462 0.00 0.00 0.00 1.75
486 487 7.399191 TCAAACATGTACTACACCCTCTATTCT 59.601 37.037 0.00 0.00 0.00 2.40
487 488 8.692710 CAAACATGTACTACACCCTCTATTCTA 58.307 37.037 0.00 0.00 0.00 2.10
488 489 8.834004 AACATGTACTACACCCTCTATTCTAA 57.166 34.615 0.00 0.00 0.00 2.10
489 490 8.834004 ACATGTACTACACCCTCTATTCTAAA 57.166 34.615 0.00 0.00 0.00 1.85
490 491 9.435570 ACATGTACTACACCCTCTATTCTAAAT 57.564 33.333 0.00 0.00 0.00 1.40
493 494 9.710818 TGTACTACACCCTCTATTCTAAATTCT 57.289 33.333 0.00 0.00 0.00 2.40
526 527 9.862585 AAGATGTTTTCGCAATTCAATTTAAAC 57.137 25.926 0.00 0.00 0.00 2.01
527 528 8.495148 AGATGTTTTCGCAATTCAATTTAAACC 58.505 29.630 0.00 0.00 0.00 3.27
528 529 7.539712 TGTTTTCGCAATTCAATTTAAACCA 57.460 28.000 0.00 0.00 0.00 3.67
529 530 7.625553 TGTTTTCGCAATTCAATTTAAACCAG 58.374 30.769 0.00 0.00 0.00 4.00
530 531 5.837586 TTCGCAATTCAATTTAAACCAGC 57.162 34.783 0.00 0.00 0.00 4.85
531 532 4.876125 TCGCAATTCAATTTAAACCAGCA 58.124 34.783 0.00 0.00 0.00 4.41
532 533 5.292765 TCGCAATTCAATTTAAACCAGCAA 58.707 33.333 0.00 0.00 0.00 3.91
533 534 5.755375 TCGCAATTCAATTTAAACCAGCAAA 59.245 32.000 0.00 0.00 0.00 3.68
534 535 6.258727 TCGCAATTCAATTTAAACCAGCAAAA 59.741 30.769 0.00 0.00 0.00 2.44
535 536 6.356714 CGCAATTCAATTTAAACCAGCAAAAC 59.643 34.615 0.00 0.00 0.00 2.43
536 537 6.636447 GCAATTCAATTTAAACCAGCAAAACC 59.364 34.615 0.00 0.00 0.00 3.27
537 538 6.875948 ATTCAATTTAAACCAGCAAAACCC 57.124 33.333 0.00 0.00 0.00 4.11
538 539 5.622346 TCAATTTAAACCAGCAAAACCCT 57.378 34.783 0.00 0.00 0.00 4.34
539 540 5.995446 TCAATTTAAACCAGCAAAACCCTT 58.005 33.333 0.00 0.00 0.00 3.95
540 541 6.418946 TCAATTTAAACCAGCAAAACCCTTT 58.581 32.000 0.00 0.00 0.00 3.11
541 542 6.887002 TCAATTTAAACCAGCAAAACCCTTTT 59.113 30.769 0.00 0.00 0.00 2.27
542 543 8.047310 TCAATTTAAACCAGCAAAACCCTTTTA 58.953 29.630 0.00 0.00 0.00 1.52
543 544 7.795482 ATTTAAACCAGCAAAACCCTTTTAC 57.205 32.000 0.00 0.00 0.00 2.01
544 545 4.828072 AAACCAGCAAAACCCTTTTACA 57.172 36.364 0.00 0.00 0.00 2.41
545 546 5.366482 AAACCAGCAAAACCCTTTTACAT 57.634 34.783 0.00 0.00 0.00 2.29
546 547 5.366482 AACCAGCAAAACCCTTTTACATT 57.634 34.783 0.00 0.00 0.00 2.71
547 548 5.366482 ACCAGCAAAACCCTTTTACATTT 57.634 34.783 0.00 0.00 0.00 2.32
548 549 6.487299 ACCAGCAAAACCCTTTTACATTTA 57.513 33.333 0.00 0.00 0.00 1.40
549 550 6.521162 ACCAGCAAAACCCTTTTACATTTAG 58.479 36.000 0.00 0.00 0.00 1.85
550 551 6.325286 ACCAGCAAAACCCTTTTACATTTAGA 59.675 34.615 0.00 0.00 0.00 2.10
551 552 7.147637 ACCAGCAAAACCCTTTTACATTTAGAA 60.148 33.333 0.00 0.00 0.00 2.10
552 553 7.713073 CCAGCAAAACCCTTTTACATTTAGAAA 59.287 33.333 0.00 0.00 0.00 2.52
553 554 9.271828 CAGCAAAACCCTTTTACATTTAGAAAT 57.728 29.630 0.00 0.00 0.00 2.17
599 605 4.750952 TCTGACGACTCTTTCACAGTAG 57.249 45.455 0.00 0.00 32.96 2.57
666 676 2.358615 GTCCACGACATGCCTGCA 60.359 61.111 0.00 0.00 32.09 4.41
738 778 6.017357 GGCCAATTTTCTACGAACCCTAATAG 60.017 42.308 0.00 0.00 0.00 1.73
786 859 3.331150 TCGTTAATCACCTCGCAACAAT 58.669 40.909 0.00 0.00 0.00 2.71
841 918 2.610232 GGTTCGTTTACCACCTCGCTAA 60.610 50.000 0.00 0.00 38.12 3.09
842 919 3.256558 GTTCGTTTACCACCTCGCTAAT 58.743 45.455 0.00 0.00 0.00 1.73
843 920 3.155093 TCGTTTACCACCTCGCTAATC 57.845 47.619 0.00 0.00 0.00 1.75
844 921 2.492881 TCGTTTACCACCTCGCTAATCA 59.507 45.455 0.00 0.00 0.00 2.57
845 922 2.601763 CGTTTACCACCTCGCTAATCAC 59.398 50.000 0.00 0.00 0.00 3.06
894 978 1.203199 TCCCCCATAAAACACCAACCC 60.203 52.381 0.00 0.00 0.00 4.11
896 980 1.483307 CCCCATAAAACACCAACCCCA 60.483 52.381 0.00 0.00 0.00 4.96
897 981 2.330216 CCCATAAAACACCAACCCCAA 58.670 47.619 0.00 0.00 0.00 4.12
928 1022 1.618343 TCATTTCAGAGTCCAGACGCA 59.382 47.619 4.35 0.00 36.20 5.24
975 1105 0.385751 CGCCGATCTCTGTGGTACAT 59.614 55.000 0.00 0.00 44.52 2.29
987 1117 1.336887 GTGGTACATGAGCACGTGAGT 60.337 52.381 22.23 4.89 45.99 3.41
988 1118 2.094906 GTGGTACATGAGCACGTGAGTA 60.095 50.000 22.23 10.10 45.99 2.59
989 1119 4.216333 GTGGTACATGAGCACGTGAGTAC 61.216 52.174 22.23 19.85 45.99 2.73
1143 1316 2.821366 GTCGCCCTCGTCGTCCTA 60.821 66.667 0.00 0.00 36.96 2.94
1161 1337 0.678684 TACATCACGACTCTGGCGGA 60.679 55.000 0.00 0.00 0.00 5.54
1194 1385 2.347490 GCCGAAGAAGGTGCCAGA 59.653 61.111 0.00 0.00 0.00 3.86
1212 1403 3.441572 CCAGAATAACCAAGGTGAAGCTG 59.558 47.826 0.00 0.00 0.00 4.24
1263 1454 1.065928 GGTCTACCGCCTCATCACG 59.934 63.158 0.00 0.00 0.00 4.35
1283 1485 2.328099 CCCAAGGTTCGTGCTCTGC 61.328 63.158 0.00 0.00 0.00 4.26
1292 1494 2.747460 GTGCTCTGCATCCGCCAA 60.747 61.111 0.00 0.00 41.91 4.52
1295 1542 2.046023 CTCTGCATCCGCCAACCA 60.046 61.111 0.00 0.00 37.32 3.67
1320 1569 6.704289 TCTTGGATTGGATTCTATTTGCTG 57.296 37.500 0.00 0.00 0.00 4.41
1323 1572 4.581824 TGGATTGGATTCTATTTGCTGCTC 59.418 41.667 0.00 0.00 0.00 4.26
1326 1575 2.938451 TGGATTCTATTTGCTGCTCGTG 59.062 45.455 0.00 0.00 0.00 4.35
1363 1654 5.653330 TCTTGCTTGCATGGAGATTAATCAA 59.347 36.000 17.56 3.36 0.00 2.57
1364 1655 6.322969 TCTTGCTTGCATGGAGATTAATCAAT 59.677 34.615 17.56 5.51 0.00 2.57
1365 1656 6.080648 TGCTTGCATGGAGATTAATCAATC 57.919 37.500 17.56 7.14 40.85 2.67
1462 1754 2.124109 AGGCGATCGAGCAGGAGA 60.124 61.111 21.57 0.00 39.27 3.71
1545 1840 1.004560 CAGAGGCGAACAGAGGCAA 60.005 57.895 0.00 0.00 36.55 4.52
1593 2057 2.432628 GAGACGGACCGGCAACAG 60.433 66.667 24.57 0.00 37.34 3.16
1660 2142 1.662629 CGTTGCAGAGCATTACAGAGG 59.337 52.381 0.00 0.00 38.76 3.69
1679 2173 4.380628 GTCGTCGAGCGGACACGT 62.381 66.667 10.81 0.00 46.42 4.49
1681 2175 4.086178 CGTCGAGCGGACACGTCT 62.086 66.667 10.81 0.00 46.42 4.18
1682 2176 2.202324 GTCGAGCGGACACGTCTC 60.202 66.667 6.14 0.00 45.36 3.36
1686 2209 1.286260 GAGCGGACACGTCTCTGTT 59.714 57.895 1.47 0.00 43.45 3.16
1696 2241 4.781071 ACACGTCTCTGTTAACGAACTAG 58.219 43.478 0.26 0.00 41.29 2.57
1729 2275 0.759959 GAAGGTTAGGGGGAGCTAGC 59.240 60.000 6.62 6.62 0.00 3.42
1730 2276 1.049289 AAGGTTAGGGGGAGCTAGCG 61.049 60.000 9.55 0.00 0.00 4.26
1739 2285 1.539280 GGGGAGCTAGCGAGAAATGTC 60.539 57.143 9.55 0.00 0.00 3.06
1743 2322 3.037324 GAGCTAGCGAGAAATGTCGTAC 58.963 50.000 9.55 0.00 42.17 3.67
1745 2324 3.066900 AGCTAGCGAGAAATGTCGTACAT 59.933 43.478 9.55 0.00 41.31 2.29
1826 3662 3.383505 TGATACAGTAGCACGCATTACCT 59.616 43.478 0.00 0.00 0.00 3.08
1860 3714 3.560668 GGTGAAAATTACCCGTTCCTCCT 60.561 47.826 0.00 0.00 31.89 3.69
1862 3716 4.155462 GTGAAAATTACCCGTTCCTCCTTC 59.845 45.833 0.00 0.00 0.00 3.46
1900 4132 2.577700 TCCAAGCCACACGTGTAATTT 58.422 42.857 22.90 12.47 0.00 1.82
1911 4143 3.743911 CACGTGTAATTTCCAGTAGTGCA 59.256 43.478 7.58 0.00 0.00 4.57
1914 4146 5.144359 CGTGTAATTTCCAGTAGTGCAAAC 58.856 41.667 0.00 0.00 0.00 2.93
1920 4152 2.422597 TCCAGTAGTGCAAACGATTGG 58.577 47.619 7.57 0.00 37.02 3.16
1935 4167 2.778299 GATTGGTGTGCACTCCTTGTA 58.222 47.619 31.79 18.09 0.00 2.41
1937 4169 4.513442 GATTGGTGTGCACTCCTTGTATA 58.487 43.478 31.79 13.23 0.00 1.47
1938 4170 3.328382 TGGTGTGCACTCCTTGTATAC 57.672 47.619 31.79 13.43 32.14 1.47
1939 4171 2.903784 TGGTGTGCACTCCTTGTATACT 59.096 45.455 31.79 0.00 33.26 2.12
1941 4173 3.684788 GGTGTGCACTCCTTGTATACTTG 59.315 47.826 26.86 0.00 33.26 3.16
1943 4175 5.475719 GTGTGCACTCCTTGTATACTTGTA 58.524 41.667 19.41 0.00 30.58 2.41
1944 4176 6.106673 GTGTGCACTCCTTGTATACTTGTAT 58.893 40.000 19.41 0.00 30.58 2.29
2056 6976 4.998671 TGACTGAAAAAGGCATTGTCAA 57.001 36.364 0.00 0.00 39.84 3.18
2115 7069 6.773976 TCAGTTCTGACCAGTTCAAATTTT 57.226 33.333 0.00 0.00 32.21 1.82
2119 7075 8.137437 CAGTTCTGACCAGTTCAAATTTTATGT 58.863 33.333 0.00 0.00 32.21 2.29
2120 7076 9.349713 AGTTCTGACCAGTTCAAATTTTATGTA 57.650 29.630 0.00 0.00 32.21 2.29
2221 7181 3.649981 AGGGAGGTCATGATCGATGAAAT 59.350 43.478 0.54 0.00 42.96 2.17
2324 7284 1.745489 GCCAAGCCTCGGAATTCGT 60.745 57.895 0.00 0.00 40.32 3.85
2328 7288 2.076863 CAAGCCTCGGAATTCGTTCTT 58.923 47.619 0.00 0.00 40.32 2.52
2412 7393 3.617284 TGAATGTAGTAGCGAGTCTCCA 58.383 45.455 0.00 0.00 0.00 3.86
2433 7415 4.923281 CCATTCAACATTTCCTTCGTTTCC 59.077 41.667 0.00 0.00 0.00 3.13
2450 7434 6.033341 TCGTTTCCTTGACAAGACAAAATTG 58.967 36.000 16.99 10.15 0.00 2.32
2585 7601 7.527568 AATCTAAATTGTTCCGTTTAACCCA 57.472 32.000 0.00 0.00 0.00 4.51
2686 7703 4.219919 AGGTAGGCTCATTCCTCTCTAAC 58.780 47.826 0.00 0.00 37.66 2.34
2690 7707 3.390639 AGGCTCATTCCTCTCTAACATGG 59.609 47.826 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.551734 ACGAACTTAGTTGGACTATAAAAAGTT 57.448 29.630 13.77 5.91 32.50 2.66
15 16 8.146412 ACAAACTTATACGAACTTAGTTGGACT 58.854 33.333 13.77 3.38 0.00 3.85
16 17 8.302965 ACAAACTTATACGAACTTAGTTGGAC 57.697 34.615 13.77 0.00 0.00 4.02
17 18 8.891671 AACAAACTTATACGAACTTAGTTGGA 57.108 30.769 13.77 0.00 0.00 3.53
18 19 8.225777 GGAACAAACTTATACGAACTTAGTTGG 58.774 37.037 0.93 3.61 0.00 3.77
19 20 8.767085 TGGAACAAACTTATACGAACTTAGTTG 58.233 33.333 0.93 0.00 31.92 3.16
20 21 8.891671 TGGAACAAACTTATACGAACTTAGTT 57.108 30.769 0.00 0.00 31.92 2.24
21 22 7.601508 CCTGGAACAAACTTATACGAACTTAGT 59.398 37.037 0.00 0.00 38.70 2.24
22 23 7.816031 TCCTGGAACAAACTTATACGAACTTAG 59.184 37.037 0.00 0.00 38.70 2.18
23 24 7.669427 TCCTGGAACAAACTTATACGAACTTA 58.331 34.615 0.00 0.00 38.70 2.24
24 25 6.527423 TCCTGGAACAAACTTATACGAACTT 58.473 36.000 0.00 0.00 38.70 2.66
25 26 6.105397 TCCTGGAACAAACTTATACGAACT 57.895 37.500 0.00 0.00 38.70 3.01
26 27 6.674760 GCATCCTGGAACAAACTTATACGAAC 60.675 42.308 0.00 0.00 38.70 3.95
27 28 5.353123 GCATCCTGGAACAAACTTATACGAA 59.647 40.000 0.00 0.00 38.70 3.85
28 29 4.873827 GCATCCTGGAACAAACTTATACGA 59.126 41.667 0.00 0.00 38.70 3.43
29 30 4.634004 TGCATCCTGGAACAAACTTATACG 59.366 41.667 0.00 0.00 38.70 3.06
30 31 6.543831 AGATGCATCCTGGAACAAACTTATAC 59.456 38.462 23.06 0.00 38.70 1.47
31 32 6.662755 AGATGCATCCTGGAACAAACTTATA 58.337 36.000 23.06 0.00 38.70 0.98
32 33 5.513233 AGATGCATCCTGGAACAAACTTAT 58.487 37.500 23.06 0.00 38.70 1.73
33 34 4.922206 AGATGCATCCTGGAACAAACTTA 58.078 39.130 23.06 0.00 38.70 2.24
34 35 3.771216 AGATGCATCCTGGAACAAACTT 58.229 40.909 23.06 0.00 38.70 2.66
35 36 3.446442 AGATGCATCCTGGAACAAACT 57.554 42.857 23.06 4.25 38.70 2.66
36 37 4.458989 TGTTAGATGCATCCTGGAACAAAC 59.541 41.667 23.06 13.63 38.70 2.93
37 38 4.661222 TGTTAGATGCATCCTGGAACAAA 58.339 39.130 23.06 5.45 38.70 2.83
38 39 4.299586 TGTTAGATGCATCCTGGAACAA 57.700 40.909 23.06 10.02 38.70 2.83
39 40 3.998913 TGTTAGATGCATCCTGGAACA 57.001 42.857 23.06 21.85 0.00 3.18
40 41 7.229306 TCAATATTGTTAGATGCATCCTGGAAC 59.771 37.037 23.06 19.84 0.00 3.62
41 42 7.289310 TCAATATTGTTAGATGCATCCTGGAA 58.711 34.615 23.06 11.52 0.00 3.53
42 43 6.840527 TCAATATTGTTAGATGCATCCTGGA 58.159 36.000 23.06 0.00 0.00 3.86
43 44 7.698506 ATCAATATTGTTAGATGCATCCTGG 57.301 36.000 23.06 2.03 0.00 4.45
44 45 9.406828 CAAATCAATATTGTTAGATGCATCCTG 57.593 33.333 23.06 6.97 0.00 3.86
45 46 8.086522 GCAAATCAATATTGTTAGATGCATCCT 58.913 33.333 23.06 12.70 0.00 3.24
46 47 8.086522 AGCAAATCAATATTGTTAGATGCATCC 58.913 33.333 23.06 8.72 0.00 3.51
90 91 6.512342 TTGACCAAGTTTACCGAAGAAAAA 57.488 33.333 0.00 0.00 0.00 1.94
91 92 6.151480 AGTTTGACCAAGTTTACCGAAGAAAA 59.849 34.615 0.00 0.00 0.00 2.29
92 93 5.648960 AGTTTGACCAAGTTTACCGAAGAAA 59.351 36.000 0.00 0.00 0.00 2.52
93 94 5.187687 AGTTTGACCAAGTTTACCGAAGAA 58.812 37.500 0.00 0.00 0.00 2.52
94 95 4.773013 AGTTTGACCAAGTTTACCGAAGA 58.227 39.130 0.00 0.00 0.00 2.87
95 96 5.494632 AAGTTTGACCAAGTTTACCGAAG 57.505 39.130 0.00 0.00 0.00 3.79
96 97 5.900865 AAAGTTTGACCAAGTTTACCGAA 57.099 34.783 0.00 0.00 36.42 4.30
97 98 6.362210 GTAAAGTTTGACCAAGTTTACCGA 57.638 37.500 14.55 0.00 46.78 4.69
164 165 9.969001 GGATTGGAGAAGTACTACTCTATCTAT 57.031 37.037 0.00 0.00 34.11 1.98
165 166 8.946248 TGGATTGGAGAAGTACTACTCTATCTA 58.054 37.037 0.00 0.00 34.11 1.98
166 167 7.817440 TGGATTGGAGAAGTACTACTCTATCT 58.183 38.462 0.00 0.00 34.11 1.98
167 168 8.644374 ATGGATTGGAGAAGTACTACTCTATC 57.356 38.462 0.00 0.00 34.11 2.08
169 170 9.575868 CTTATGGATTGGAGAAGTACTACTCTA 57.424 37.037 0.00 0.00 34.11 2.43
170 171 8.062536 ACTTATGGATTGGAGAAGTACTACTCT 58.937 37.037 0.00 0.00 34.11 3.24
171 172 8.240267 ACTTATGGATTGGAGAAGTACTACTC 57.760 38.462 0.00 0.00 0.00 2.59
172 173 8.611051 AACTTATGGATTGGAGAAGTACTACT 57.389 34.615 0.00 0.00 30.34 2.57
173 174 9.968870 CTAACTTATGGATTGGAGAAGTACTAC 57.031 37.037 0.00 0.00 30.34 2.73
174 175 9.710818 ACTAACTTATGGATTGGAGAAGTACTA 57.289 33.333 0.00 0.00 30.34 1.82
175 176 8.478877 CACTAACTTATGGATTGGAGAAGTACT 58.521 37.037 0.00 0.00 30.34 2.73
176 177 7.224949 GCACTAACTTATGGATTGGAGAAGTAC 59.775 40.741 0.00 0.00 30.34 2.73
177 178 7.093068 TGCACTAACTTATGGATTGGAGAAGTA 60.093 37.037 0.00 0.00 30.34 2.24
178 179 6.116126 GCACTAACTTATGGATTGGAGAAGT 58.884 40.000 0.00 0.00 31.79 3.01
179 180 6.115446 TGCACTAACTTATGGATTGGAGAAG 58.885 40.000 0.00 0.00 0.00 2.85
180 181 6.061022 TGCACTAACTTATGGATTGGAGAA 57.939 37.500 0.00 0.00 0.00 2.87
181 182 5.692115 TGCACTAACTTATGGATTGGAGA 57.308 39.130 0.00 0.00 0.00 3.71
182 183 9.896645 ATATATGCACTAACTTATGGATTGGAG 57.103 33.333 0.00 0.00 0.00 3.86
209 210 9.651913 TCAGCAAAGTTTGACTTTTTAGAAAAT 57.348 25.926 19.82 0.00 45.38 1.82
210 211 8.921670 GTCAGCAAAGTTTGACTTTTTAGAAAA 58.078 29.630 19.82 0.00 45.38 2.29
211 212 8.460831 GTCAGCAAAGTTTGACTTTTTAGAAA 57.539 30.769 19.82 0.00 45.38 2.52
221 222 3.489229 GGTCCAAGTCAGCAAAGTTTGAC 60.489 47.826 19.82 8.82 43.08 3.18
222 223 2.687935 GGTCCAAGTCAGCAAAGTTTGA 59.312 45.455 19.82 0.00 0.00 2.69
223 224 2.426738 TGGTCCAAGTCAGCAAAGTTTG 59.573 45.455 11.41 11.41 0.00 2.93
224 225 2.733956 TGGTCCAAGTCAGCAAAGTTT 58.266 42.857 0.00 0.00 0.00 2.66
225 226 2.435372 TGGTCCAAGTCAGCAAAGTT 57.565 45.000 0.00 0.00 0.00 2.66
226 227 2.435372 TTGGTCCAAGTCAGCAAAGT 57.565 45.000 0.00 0.00 0.00 2.66
227 228 3.152341 AGATTGGTCCAAGTCAGCAAAG 58.848 45.455 10.72 0.00 35.03 2.77
228 229 3.228188 AGATTGGTCCAAGTCAGCAAA 57.772 42.857 10.72 0.00 35.03 3.68
229 230 2.957402 AGATTGGTCCAAGTCAGCAA 57.043 45.000 10.72 0.00 35.79 3.91
230 231 4.019411 TCAATAGATTGGTCCAAGTCAGCA 60.019 41.667 10.72 0.00 38.30 4.41
231 232 4.333926 GTCAATAGATTGGTCCAAGTCAGC 59.666 45.833 10.72 0.00 38.30 4.26
232 233 4.568359 CGTCAATAGATTGGTCCAAGTCAG 59.432 45.833 10.72 0.00 38.30 3.51
233 234 4.221924 TCGTCAATAGATTGGTCCAAGTCA 59.778 41.667 10.72 0.00 38.30 3.41
234 235 4.755411 TCGTCAATAGATTGGTCCAAGTC 58.245 43.478 10.72 7.98 38.30 3.01
235 236 4.819105 TCGTCAATAGATTGGTCCAAGT 57.181 40.909 10.72 2.54 38.30 3.16
236 237 6.051717 AGATTCGTCAATAGATTGGTCCAAG 58.948 40.000 10.72 0.00 38.30 3.61
237 238 5.989477 AGATTCGTCAATAGATTGGTCCAA 58.011 37.500 6.80 6.80 38.30 3.53
238 239 5.614324 AGATTCGTCAATAGATTGGTCCA 57.386 39.130 2.52 0.00 38.30 4.02
239 240 7.872993 TCATTAGATTCGTCAATAGATTGGTCC 59.127 37.037 2.52 0.00 38.30 4.46
240 241 8.818141 TCATTAGATTCGTCAATAGATTGGTC 57.182 34.615 2.52 0.00 38.30 4.02
241 242 9.613428 TTTCATTAGATTCGTCAATAGATTGGT 57.387 29.630 2.52 0.00 38.30 3.67
242 243 9.869844 GTTTCATTAGATTCGTCAATAGATTGG 57.130 33.333 2.52 0.00 38.30 3.16
249 250 9.823647 AGATGTAGTTTCATTAGATTCGTCAAT 57.176 29.630 0.00 0.00 0.00 2.57
250 251 9.653287 AAGATGTAGTTTCATTAGATTCGTCAA 57.347 29.630 0.00 0.00 0.00 3.18
278 279 9.571816 TGCCAAACATATATGATTAGATTGTCA 57.428 29.630 19.63 7.46 0.00 3.58
288 289 9.970553 ACATCTAGAATGCCAAACATATATGAT 57.029 29.630 19.63 4.54 38.34 2.45
315 316 9.320295 TGACCAAGTTTGAGGGAAAATATATTT 57.680 29.630 4.81 4.81 0.00 1.40
316 317 8.893563 TGACCAAGTTTGAGGGAAAATATATT 57.106 30.769 0.00 0.00 0.00 1.28
317 318 8.893563 TTGACCAAGTTTGAGGGAAAATATAT 57.106 30.769 0.00 0.00 0.00 0.86
318 319 8.713708 TTTGACCAAGTTTGAGGGAAAATATA 57.286 30.769 0.00 0.00 0.00 0.86
319 320 7.610580 TTTGACCAAGTTTGAGGGAAAATAT 57.389 32.000 0.00 0.00 0.00 1.28
320 321 7.425224 TTTTGACCAAGTTTGAGGGAAAATA 57.575 32.000 0.00 0.00 0.00 1.40
321 322 5.948742 TTTGACCAAGTTTGAGGGAAAAT 57.051 34.783 0.00 0.00 0.00 1.82
322 323 5.746990 TTTTGACCAAGTTTGAGGGAAAA 57.253 34.783 0.00 0.00 0.00 2.29
323 324 5.948742 ATTTTGACCAAGTTTGAGGGAAA 57.051 34.783 0.00 0.00 0.00 3.13
324 325 6.133356 ACTATTTTGACCAAGTTTGAGGGAA 58.867 36.000 0.00 0.00 0.00 3.97
325 326 5.701224 ACTATTTTGACCAAGTTTGAGGGA 58.299 37.500 0.00 0.00 0.00 4.20
326 327 6.940298 TCTACTATTTTGACCAAGTTTGAGGG 59.060 38.462 0.00 0.00 0.00 4.30
327 328 7.979444 TCTACTATTTTGACCAAGTTTGAGG 57.021 36.000 0.00 0.00 0.00 3.86
328 329 9.273016 TCTTCTACTATTTTGACCAAGTTTGAG 57.727 33.333 0.00 0.00 0.00 3.02
329 330 9.052759 GTCTTCTACTATTTTGACCAAGTTTGA 57.947 33.333 0.00 0.00 0.00 2.69
330 331 8.836413 TGTCTTCTACTATTTTGACCAAGTTTG 58.164 33.333 0.00 0.00 0.00 2.93
331 332 8.974060 TGTCTTCTACTATTTTGACCAAGTTT 57.026 30.769 0.00 0.00 0.00 2.66
332 333 8.974060 TTGTCTTCTACTATTTTGACCAAGTT 57.026 30.769 0.00 0.00 0.00 2.66
333 334 9.220767 GATTGTCTTCTACTATTTTGACCAAGT 57.779 33.333 0.00 0.00 0.00 3.16
334 335 8.669243 GGATTGTCTTCTACTATTTTGACCAAG 58.331 37.037 0.00 0.00 0.00 3.61
335 336 8.160765 TGGATTGTCTTCTACTATTTTGACCAA 58.839 33.333 0.00 0.00 0.00 3.67
336 337 7.685481 TGGATTGTCTTCTACTATTTTGACCA 58.315 34.615 0.00 0.00 0.00 4.02
337 338 8.561738 TTGGATTGTCTTCTACTATTTTGACC 57.438 34.615 0.00 0.00 0.00 4.02
338 339 9.827411 GTTTGGATTGTCTTCTACTATTTTGAC 57.173 33.333 0.00 0.00 0.00 3.18
339 340 9.567776 TGTTTGGATTGTCTTCTACTATTTTGA 57.432 29.630 0.00 0.00 0.00 2.69
369 370 8.928733 GGTGTAGTGTTCTCGATGTAATTTTTA 58.071 33.333 0.00 0.00 0.00 1.52
370 371 7.442969 TGGTGTAGTGTTCTCGATGTAATTTTT 59.557 33.333 0.00 0.00 0.00 1.94
371 372 6.932400 TGGTGTAGTGTTCTCGATGTAATTTT 59.068 34.615 0.00 0.00 0.00 1.82
372 373 6.460781 TGGTGTAGTGTTCTCGATGTAATTT 58.539 36.000 0.00 0.00 0.00 1.82
373 374 6.032956 TGGTGTAGTGTTCTCGATGTAATT 57.967 37.500 0.00 0.00 0.00 1.40
374 375 5.654603 TGGTGTAGTGTTCTCGATGTAAT 57.345 39.130 0.00 0.00 0.00 1.89
375 376 5.654603 ATGGTGTAGTGTTCTCGATGTAA 57.345 39.130 0.00 0.00 0.00 2.41
376 377 6.117488 TCTATGGTGTAGTGTTCTCGATGTA 58.883 40.000 0.00 0.00 0.00 2.29
377 378 4.948004 TCTATGGTGTAGTGTTCTCGATGT 59.052 41.667 0.00 0.00 0.00 3.06
378 379 5.297029 TCTCTATGGTGTAGTGTTCTCGATG 59.703 44.000 0.00 0.00 0.00 3.84
379 380 5.297278 GTCTCTATGGTGTAGTGTTCTCGAT 59.703 44.000 0.00 0.00 0.00 3.59
380 381 4.634883 GTCTCTATGGTGTAGTGTTCTCGA 59.365 45.833 0.00 0.00 0.00 4.04
381 382 4.395231 TGTCTCTATGGTGTAGTGTTCTCG 59.605 45.833 0.00 0.00 0.00 4.04
382 383 5.899120 TGTCTCTATGGTGTAGTGTTCTC 57.101 43.478 0.00 0.00 0.00 2.87
383 384 8.540507 AATATGTCTCTATGGTGTAGTGTTCT 57.459 34.615 0.00 0.00 0.00 3.01
393 394 9.797642 TGCATTTCATAAATATGTCTCTATGGT 57.202 29.630 0.68 0.00 35.26 3.55
400 401 9.236006 GGGTCTATGCATTTCATAAATATGTCT 57.764 33.333 3.54 0.00 37.22 3.41
401 402 9.013229 TGGGTCTATGCATTTCATAAATATGTC 57.987 33.333 3.54 0.00 37.22 3.06
402 403 8.938801 TGGGTCTATGCATTTCATAAATATGT 57.061 30.769 3.54 0.00 37.22 2.29
411 412 9.585369 TGATAAATATTGGGTCTATGCATTTCA 57.415 29.630 3.54 0.00 0.00 2.69
415 416 9.365906 TGTTTGATAAATATTGGGTCTATGCAT 57.634 29.630 3.79 3.79 0.00 3.96
416 417 8.759481 TGTTTGATAAATATTGGGTCTATGCA 57.241 30.769 0.00 0.00 0.00 3.96
421 422 8.318412 GGGTTTTGTTTGATAAATATTGGGTCT 58.682 33.333 0.00 0.00 0.00 3.85
422 423 8.318412 AGGGTTTTGTTTGATAAATATTGGGTC 58.682 33.333 0.00 0.00 0.00 4.46
423 424 8.213489 AGGGTTTTGTTTGATAAATATTGGGT 57.787 30.769 0.00 0.00 0.00 4.51
424 425 9.594478 GTAGGGTTTTGTTTGATAAATATTGGG 57.406 33.333 0.00 0.00 0.00 4.12
430 431 9.541143 CAGTTTGTAGGGTTTTGTTTGATAAAT 57.459 29.630 0.00 0.00 0.00 1.40
431 432 7.492994 GCAGTTTGTAGGGTTTTGTTTGATAAA 59.507 33.333 0.00 0.00 0.00 1.40
432 433 6.981559 GCAGTTTGTAGGGTTTTGTTTGATAA 59.018 34.615 0.00 0.00 0.00 1.75
433 434 6.461788 GGCAGTTTGTAGGGTTTTGTTTGATA 60.462 38.462 0.00 0.00 0.00 2.15
434 435 5.356426 GCAGTTTGTAGGGTTTTGTTTGAT 58.644 37.500 0.00 0.00 0.00 2.57
435 436 4.382147 GGCAGTTTGTAGGGTTTTGTTTGA 60.382 41.667 0.00 0.00 0.00 2.69
436 437 3.868661 GGCAGTTTGTAGGGTTTTGTTTG 59.131 43.478 0.00 0.00 0.00 2.93
437 438 3.118555 GGGCAGTTTGTAGGGTTTTGTTT 60.119 43.478 0.00 0.00 0.00 2.83
438 439 2.432874 GGGCAGTTTGTAGGGTTTTGTT 59.567 45.455 0.00 0.00 0.00 2.83
439 440 2.036387 GGGCAGTTTGTAGGGTTTTGT 58.964 47.619 0.00 0.00 0.00 2.83
440 441 2.296190 GAGGGCAGTTTGTAGGGTTTTG 59.704 50.000 0.00 0.00 0.00 2.44
441 442 2.091555 TGAGGGCAGTTTGTAGGGTTTT 60.092 45.455 0.00 0.00 0.00 2.43
442 443 1.497286 TGAGGGCAGTTTGTAGGGTTT 59.503 47.619 0.00 0.00 0.00 3.27
443 444 1.145571 TGAGGGCAGTTTGTAGGGTT 58.854 50.000 0.00 0.00 0.00 4.11
444 445 1.145571 TTGAGGGCAGTTTGTAGGGT 58.854 50.000 0.00 0.00 0.00 4.34
445 446 1.886542 GTTTGAGGGCAGTTTGTAGGG 59.113 52.381 0.00 0.00 0.00 3.53
446 447 2.582052 TGTTTGAGGGCAGTTTGTAGG 58.418 47.619 0.00 0.00 0.00 3.18
447 448 3.569701 ACATGTTTGAGGGCAGTTTGTAG 59.430 43.478 0.00 0.00 0.00 2.74
448 449 3.561143 ACATGTTTGAGGGCAGTTTGTA 58.439 40.909 0.00 0.00 0.00 2.41
449 450 2.387757 ACATGTTTGAGGGCAGTTTGT 58.612 42.857 0.00 0.00 0.00 2.83
450 451 3.569701 AGTACATGTTTGAGGGCAGTTTG 59.430 43.478 2.30 0.00 0.00 2.93
451 452 3.832527 AGTACATGTTTGAGGGCAGTTT 58.167 40.909 2.30 0.00 0.00 2.66
452 453 3.508845 AGTACATGTTTGAGGGCAGTT 57.491 42.857 2.30 0.00 0.00 3.16
453 454 3.326588 TGTAGTACATGTTTGAGGGCAGT 59.673 43.478 2.30 0.00 0.00 4.40
454 455 3.684788 GTGTAGTACATGTTTGAGGGCAG 59.315 47.826 2.30 0.00 0.00 4.85
455 456 3.558321 GGTGTAGTACATGTTTGAGGGCA 60.558 47.826 2.30 0.00 0.00 5.36
456 457 3.007635 GGTGTAGTACATGTTTGAGGGC 58.992 50.000 2.30 0.00 0.00 5.19
457 458 3.263425 AGGGTGTAGTACATGTTTGAGGG 59.737 47.826 2.30 0.00 0.00 4.30
458 459 4.223032 AGAGGGTGTAGTACATGTTTGAGG 59.777 45.833 2.30 0.00 0.00 3.86
459 460 5.407407 AGAGGGTGTAGTACATGTTTGAG 57.593 43.478 2.30 0.00 0.00 3.02
460 461 7.399191 AGAATAGAGGGTGTAGTACATGTTTGA 59.601 37.037 2.30 0.00 0.00 2.69
461 462 7.556844 AGAATAGAGGGTGTAGTACATGTTTG 58.443 38.462 2.30 0.00 0.00 2.93
462 463 7.735326 AGAATAGAGGGTGTAGTACATGTTT 57.265 36.000 2.30 0.00 0.00 2.83
463 464 8.834004 TTAGAATAGAGGGTGTAGTACATGTT 57.166 34.615 2.30 0.00 0.00 2.71
464 465 8.834004 TTTAGAATAGAGGGTGTAGTACATGT 57.166 34.615 6.21 2.69 0.00 3.21
467 468 9.710818 AGAATTTAGAATAGAGGGTGTAGTACA 57.289 33.333 0.00 0.00 0.00 2.90
500 501 9.862585 GTTTAAATTGAATTGCGAAAACATCTT 57.137 25.926 0.00 0.00 0.00 2.40
501 502 8.495148 GGTTTAAATTGAATTGCGAAAACATCT 58.505 29.630 14.59 0.00 0.00 2.90
502 503 8.279103 TGGTTTAAATTGAATTGCGAAAACATC 58.721 29.630 14.59 0.00 0.00 3.06
503 504 8.147642 TGGTTTAAATTGAATTGCGAAAACAT 57.852 26.923 14.59 0.00 0.00 2.71
504 505 7.539712 TGGTTTAAATTGAATTGCGAAAACA 57.460 28.000 14.59 11.07 0.00 2.83
505 506 6.573357 GCTGGTTTAAATTGAATTGCGAAAAC 59.427 34.615 0.00 1.41 0.00 2.43
506 507 6.258727 TGCTGGTTTAAATTGAATTGCGAAAA 59.741 30.769 0.00 0.00 0.00 2.29
507 508 5.755375 TGCTGGTTTAAATTGAATTGCGAAA 59.245 32.000 0.00 0.00 0.00 3.46
508 509 5.292765 TGCTGGTTTAAATTGAATTGCGAA 58.707 33.333 0.00 0.00 0.00 4.70
509 510 4.876125 TGCTGGTTTAAATTGAATTGCGA 58.124 34.783 0.00 0.00 0.00 5.10
510 511 5.588568 TTGCTGGTTTAAATTGAATTGCG 57.411 34.783 0.00 0.00 0.00 4.85
511 512 6.636447 GGTTTTGCTGGTTTAAATTGAATTGC 59.364 34.615 0.00 0.00 0.00 3.56
512 513 7.013178 AGGGTTTTGCTGGTTTAAATTGAATTG 59.987 33.333 0.00 0.00 0.00 2.32
513 514 7.059788 AGGGTTTTGCTGGTTTAAATTGAATT 58.940 30.769 0.00 0.00 0.00 2.17
514 515 6.600388 AGGGTTTTGCTGGTTTAAATTGAAT 58.400 32.000 0.00 0.00 0.00 2.57
515 516 5.995446 AGGGTTTTGCTGGTTTAAATTGAA 58.005 33.333 0.00 0.00 0.00 2.69
516 517 5.622346 AGGGTTTTGCTGGTTTAAATTGA 57.378 34.783 0.00 0.00 0.00 2.57
517 518 6.691754 AAAGGGTTTTGCTGGTTTAAATTG 57.308 33.333 0.00 0.00 0.00 2.32
518 519 7.829706 TGTAAAAGGGTTTTGCTGGTTTAAATT 59.170 29.630 0.00 0.00 36.40 1.82
519 520 7.339482 TGTAAAAGGGTTTTGCTGGTTTAAAT 58.661 30.769 0.00 0.00 36.40 1.40
520 521 6.708285 TGTAAAAGGGTTTTGCTGGTTTAAA 58.292 32.000 2.61 0.00 36.40 1.52
521 522 6.295719 TGTAAAAGGGTTTTGCTGGTTTAA 57.704 33.333 2.61 0.00 36.40 1.52
522 523 5.934402 TGTAAAAGGGTTTTGCTGGTTTA 57.066 34.783 2.61 0.00 36.40 2.01
523 524 4.828072 TGTAAAAGGGTTTTGCTGGTTT 57.172 36.364 2.61 0.00 36.40 3.27
524 525 5.366482 AATGTAAAAGGGTTTTGCTGGTT 57.634 34.783 2.61 0.00 36.40 3.67
525 526 5.366482 AAATGTAAAAGGGTTTTGCTGGT 57.634 34.783 2.61 0.00 36.40 4.00
526 527 6.754193 TCTAAATGTAAAAGGGTTTTGCTGG 58.246 36.000 2.61 0.00 36.40 4.85
527 528 8.655651 TTTCTAAATGTAAAAGGGTTTTGCTG 57.344 30.769 2.61 0.00 36.40 4.41
567 568 8.139350 TGAAAGAGTCGTCAGATGTAAACTTAA 58.861 33.333 0.00 0.00 0.00 1.85
579 580 4.717991 CTCTACTGTGAAAGAGTCGTCAG 58.282 47.826 0.29 0.00 33.84 3.51
599 605 0.796927 GCGGGCAGTTCTAACAACTC 59.203 55.000 0.00 0.00 0.00 3.01
605 611 2.046314 GGCTGCGGGCAGTTCTAA 60.046 61.111 20.66 0.00 45.24 2.10
666 676 9.678260 AACAGAGCATATTTAATCTCTTCTTGT 57.322 29.630 0.00 0.00 33.99 3.16
761 831 0.651031 GCGAGGTGATTAACGAAGGC 59.349 55.000 0.00 0.00 0.00 4.35
770 841 1.470098 GCTGATTGTTGCGAGGTGATT 59.530 47.619 0.00 0.00 0.00 2.57
786 859 0.105778 TTGTGGACGTGTGATGCTGA 59.894 50.000 0.00 0.00 0.00 4.26
841 918 2.114616 GGGAGAGGAGTGTGATGTGAT 58.885 52.381 0.00 0.00 0.00 3.06
842 919 1.077828 AGGGAGAGGAGTGTGATGTGA 59.922 52.381 0.00 0.00 0.00 3.58
843 920 1.480137 GAGGGAGAGGAGTGTGATGTG 59.520 57.143 0.00 0.00 0.00 3.21
844 921 1.360852 AGAGGGAGAGGAGTGTGATGT 59.639 52.381 0.00 0.00 0.00 3.06
845 922 2.031120 GAGAGGGAGAGGAGTGTGATG 58.969 57.143 0.00 0.00 0.00 3.07
894 978 2.084546 GAAATGAGAAGGACGGGTTGG 58.915 52.381 0.00 0.00 0.00 3.77
896 980 2.637872 TCTGAAATGAGAAGGACGGGTT 59.362 45.455 0.00 0.00 0.00 4.11
897 981 2.234908 CTCTGAAATGAGAAGGACGGGT 59.765 50.000 0.00 0.00 36.23 5.28
928 1022 2.569134 GAGACGCCGTGAGCTCTT 59.431 61.111 16.19 0.00 40.39 2.85
958 1088 2.544694 GCTCATGTACCACAGAGATCGG 60.545 54.545 0.00 0.00 30.29 4.18
987 1117 3.776781 CCCATGCCCCGTCACGTA 61.777 66.667 0.00 0.00 0.00 3.57
990 1120 4.041762 TTCCCCATGCCCCGTCAC 62.042 66.667 0.00 0.00 0.00 3.67
991 1121 4.041762 GTTCCCCATGCCCCGTCA 62.042 66.667 0.00 0.00 0.00 4.35
992 1122 3.728373 AGTTCCCCATGCCCCGTC 61.728 66.667 0.00 0.00 0.00 4.79
993 1123 4.047125 CAGTTCCCCATGCCCCGT 62.047 66.667 0.00 0.00 0.00 5.28
1143 1316 1.938657 CTCCGCCAGAGTCGTGATGT 61.939 60.000 0.00 0.00 37.87 3.06
1181 1366 3.806949 TGGTTATTCTGGCACCTTCTT 57.193 42.857 0.00 0.00 0.00 2.52
1184 1375 2.110011 ACCTTGGTTATTCTGGCACCTT 59.890 45.455 0.00 0.00 0.00 3.50
1194 1385 3.084786 GAGCAGCTTCACCTTGGTTATT 58.915 45.455 0.00 0.00 0.00 1.40
1212 1403 2.360475 GTGTCCCTGGGCTTGAGC 60.360 66.667 8.22 0.00 41.14 4.26
1263 1454 0.951040 CAGAGCACGAACCTTGGGAC 60.951 60.000 0.00 0.00 0.00 4.46
1283 1485 0.457035 CCAAGAATGGTTGGCGGATG 59.543 55.000 0.00 0.00 40.70 3.51
1295 1542 7.686127 GCAGCAAATAGAATCCAATCCAAGAAT 60.686 37.037 0.00 0.00 0.00 2.40
1320 1569 0.525761 AGAGAGAGAACTGCACGAGC 59.474 55.000 0.00 0.00 42.57 5.03
1323 1572 2.594321 CAAGAGAGAGAGAACTGCACG 58.406 52.381 0.00 0.00 0.00 5.34
1326 1575 2.995258 CAAGCAAGAGAGAGAGAACTGC 59.005 50.000 0.00 0.00 0.00 4.40
1328 1577 2.632028 TGCAAGCAAGAGAGAGAGAACT 59.368 45.455 0.00 0.00 0.00 3.01
1333 1582 1.904537 TCCATGCAAGCAAGAGAGAGA 59.095 47.619 0.00 0.00 0.00 3.10
1334 1583 2.093606 TCTCCATGCAAGCAAGAGAGAG 60.094 50.000 18.55 11.61 35.73 3.20
1335 1584 1.904537 TCTCCATGCAAGCAAGAGAGA 59.095 47.619 18.55 16.39 35.73 3.10
1363 1654 2.246739 CGCGCCACGGATTGATGAT 61.247 57.895 0.00 0.00 38.44 2.45
1364 1655 2.889988 CGCGCCACGGATTGATGA 60.890 61.111 0.00 0.00 38.44 2.92
1545 1840 2.063979 TTCCTGATGATCGGCGGGT 61.064 57.895 7.21 0.00 32.28 5.28
1679 2173 8.844244 AGTTTTCTACTAGTTCGTTAACAGAGA 58.156 33.333 0.00 0.00 38.12 3.10
1696 2241 7.329499 CCCCTAACCTTCTTCTAGTTTTCTAC 58.671 42.308 0.00 0.00 0.00 2.59
1717 2263 0.399233 ATTTCTCGCTAGCTCCCCCT 60.399 55.000 13.93 0.00 0.00 4.79
1729 2275 6.569228 AATGTACATGTACGACATTTCTCG 57.431 37.500 26.59 0.00 40.09 4.04
1730 2276 7.306632 GCCTAATGTACATGTACGACATTTCTC 60.307 40.741 26.59 13.56 40.09 2.87
1739 2285 4.617223 CAGATCGCCTAATGTACATGTACG 59.383 45.833 26.59 15.42 38.85 3.67
1743 2322 5.698089 ACATTCAGATCGCCTAATGTACATG 59.302 40.000 9.63 0.00 39.96 3.21
1745 2324 5.276461 ACATTCAGATCGCCTAATGTACA 57.724 39.130 0.00 0.00 39.96 2.90
1860 3714 3.255149 GGATAAACCGCTAGATCCTCGAA 59.745 47.826 0.00 0.00 35.86 3.71
1862 3716 2.557056 TGGATAAACCGCTAGATCCTCG 59.443 50.000 0.00 0.00 42.61 4.63
1900 4132 2.224426 ACCAATCGTTTGCACTACTGGA 60.224 45.455 10.27 0.00 0.00 3.86
1911 4143 0.951558 GGAGTGCACACCAATCGTTT 59.048 50.000 26.18 0.00 39.36 3.60
1914 4146 0.518636 CAAGGAGTGCACACCAATCG 59.481 55.000 31.17 14.65 39.36 3.34
1920 4152 4.315803 ACAAGTATACAAGGAGTGCACAC 58.684 43.478 21.04 13.37 0.00 3.82
1941 4173 9.678941 TGACTCATAAAATGTAGTCATCGATAC 57.321 33.333 0.00 0.00 39.83 2.24
1943 4175 9.770097 ATTGACTCATAAAATGTAGTCATCGAT 57.230 29.630 16.04 0.00 41.93 3.59
1977 6896 8.975439 CCTATTGCAGATTTTCTCATTAAATGC 58.025 33.333 0.00 0.00 0.00 3.56
2035 6955 4.998671 TTGACAATGCCTTTTTCAGTCA 57.001 36.364 0.00 0.00 33.23 3.41
2221 7181 5.039920 TCATACGAGGCTAACTACCACTA 57.960 43.478 0.00 0.00 0.00 2.74
2328 7288 8.376889 TCGCTAGTATATTCAAATTGATGCAA 57.623 30.769 0.00 0.00 0.00 4.08
2412 7393 6.040391 TCAAGGAAACGAAGGAAATGTTGAAT 59.960 34.615 0.00 0.00 0.00 2.57
2433 7415 8.647143 AAATGTACCAATTTTGTCTTGTCAAG 57.353 30.769 6.21 6.21 0.00 3.02
2501 7499 9.733556 GGGGGTGAAAATGAATTTTTAACTATT 57.266 29.630 7.88 0.00 38.34 1.73
2504 7502 7.142995 TGGGGGTGAAAATGAATTTTTAACT 57.857 32.000 7.88 0.00 38.34 2.24
2505 7503 7.663493 TGATGGGGGTGAAAATGAATTTTTAAC 59.337 33.333 2.71 1.74 39.86 2.01
2506 7504 7.749666 TGATGGGGGTGAAAATGAATTTTTAA 58.250 30.769 2.71 0.00 39.86 1.52
2508 7506 6.198237 TGATGGGGGTGAAAATGAATTTTT 57.802 33.333 2.71 0.00 39.86 1.94
2509 7507 5.839517 TGATGGGGGTGAAAATGAATTTT 57.160 34.783 0.68 0.68 42.24 1.82
2510 7508 6.391479 AATGATGGGGGTGAAAATGAATTT 57.609 33.333 0.00 0.00 0.00 1.82
2563 7579 6.570764 GCATGGGTTAAACGGAACAATTTAGA 60.571 38.462 0.00 0.00 0.00 2.10
2585 7601 9.791801 AAAATTTGAAAAGGTAAACCATAGCAT 57.208 25.926 1.26 0.00 38.89 3.79
2639 7656 2.479566 TCTTTCATCTGCCCTGACAC 57.520 50.000 0.00 0.00 0.00 3.67
2686 7703 0.179037 ATGCGGTCTGACCATCCATG 60.179 55.000 25.42 9.87 38.47 3.66
2690 7707 4.131376 CCATGCGGTCTGACCATC 57.869 61.111 25.42 16.52 38.47 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.