Multiple sequence alignment - TraesCS2D01G082100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G082100 chr2D 100.000 3140 0 0 1 3140 35314074 35317213 0.000000e+00 5799.0
1 TraesCS2D01G082100 chr2D 90.701 1570 90 34 842 2386 35242355 35240817 0.000000e+00 2039.0
2 TraesCS2D01G082100 chr2D 94.176 601 35 0 2387 2987 552731417 552732017 0.000000e+00 917.0
3 TraesCS2D01G082100 chr2D 94.010 601 36 0 2388 2988 35321834 35322434 0.000000e+00 911.0
4 TraesCS2D01G082100 chr2D 93.333 600 40 0 2388 2987 126965537 126964938 0.000000e+00 887.0
5 TraesCS2D01G082100 chr2D 93.000 600 42 0 2388 2987 586127789 586128388 0.000000e+00 876.0
6 TraesCS2D01G082100 chr2D 81.432 377 39 13 388 733 35242744 35242368 2.380000e-71 279.0
7 TraesCS2D01G082100 chr2D 94.156 154 5 1 2987 3140 126964845 126964696 6.770000e-57 231.0
8 TraesCS2D01G082100 chr2D 94.156 154 4 1 2987 3140 60086460 60086312 2.440000e-56 230.0
9 TraesCS2D01G082100 chr2D 84.722 216 11 9 1 200 35243321 35243112 2.470000e-46 196.0
10 TraesCS2D01G082100 chr2D 85.629 167 19 3 1899 2065 35332339 35332500 1.500000e-38 171.0
11 TraesCS2D01G082100 chr2D 97.674 43 1 0 2099 2141 35332494 35332536 1.210000e-09 75.0
12 TraesCS2D01G082100 chr2A 92.181 1458 85 11 897 2340 38516532 38515090 0.000000e+00 2034.0
13 TraesCS2D01G082100 chr2A 92.234 1455 84 11 894 2334 38569862 38571301 0.000000e+00 2034.0
14 TraesCS2D01G082100 chr2A 87.268 377 34 7 371 733 38516956 38516580 4.840000e-113 418.0
15 TraesCS2D01G082100 chr2A 92.400 250 12 3 124 367 38569121 38569369 1.790000e-92 350.0
16 TraesCS2D01G082100 chr2A 89.535 258 22 4 1899 2154 38398170 38397916 3.910000e-84 322.0
17 TraesCS2D01G082100 chr2A 82.369 363 33 7 33 371 38517361 38517006 1.430000e-73 287.0
18 TraesCS2D01G082100 chr2A 81.383 376 39 14 388 733 38569443 38569817 8.580000e-71 278.0
19 TraesCS2D01G082100 chr2A 79.695 394 48 19 1 372 38529627 38529244 4.020000e-64 255.0
20 TraesCS2D01G082100 chr2A 93.750 48 3 0 2332 2379 38511023 38510976 4.340000e-09 73.1
21 TraesCS2D01G082100 chr2B 94.529 1316 62 6 845 2152 58344434 58345747 0.000000e+00 2023.0
22 TraesCS2D01G082100 chr2B 90.273 1501 88 28 843 2334 58311909 58310458 0.000000e+00 1910.0
23 TraesCS2D01G082100 chr2B 89.920 1369 84 26 859 2218 58536478 58537801 0.000000e+00 1714.0
24 TraesCS2D01G082100 chr2B 88.975 1415 84 32 897 2293 58091991 58090631 0.000000e+00 1683.0
25 TraesCS2D01G082100 chr2B 94.695 999 45 4 1244 2241 58237226 58236235 0.000000e+00 1544.0
26 TraesCS2D01G082100 chr2B 87.819 353 21 9 388 735 58312263 58311928 8.160000e-106 394.0
27 TraesCS2D01G082100 chr2B 81.013 395 41 17 1 372 58096793 58096410 1.840000e-72 283.0
28 TraesCS2D01G082100 chr2B 80.707 368 34 12 35 372 58239437 58239077 5.200000e-63 252.0
29 TraesCS2D01G082100 chr2B 80.109 367 43 14 395 733 58092403 58092039 2.420000e-61 246.0
30 TraesCS2D01G082100 chr2B 85.039 254 19 10 1214 1462 57787775 57788014 1.130000e-59 241.0
31 TraesCS2D01G082100 chr2B 85.455 220 13 11 33 239 58334325 58334538 8.820000e-51 211.0
32 TraesCS2D01G082100 chr2B 81.034 290 22 9 35 298 58094540 58094258 1.910000e-47 200.0
33 TraesCS2D01G082100 chr2B 77.372 411 38 24 1 372 58312709 58312315 3.200000e-45 193.0
34 TraesCS2D01G082100 chr2B 85.816 141 17 1 596 733 58238840 58238700 2.520000e-31 147.0
35 TraesCS2D01G082100 chr2B 86.765 136 12 3 598 733 58536337 58536466 2.520000e-31 147.0
36 TraesCS2D01G082100 chr2B 91.489 47 3 1 392 438 58238997 58238952 2.610000e-06 63.9
37 TraesCS2D01G082100 chr3D 88.845 753 58 15 2388 3140 15260523 15261249 0.000000e+00 902.0
38 TraesCS2D01G082100 chr5D 93.333 600 40 0 2388 2987 246019654 246019055 0.000000e+00 887.0
39 TraesCS2D01G082100 chr5D 96.104 154 6 0 2987 3140 246018962 246018809 5.200000e-63 252.0
40 TraesCS2D01G082100 chr5D 94.156 154 7 2 2987 3140 483795231 483795080 1.880000e-57 233.0
41 TraesCS2D01G082100 chr5D 94.156 154 4 1 2987 3140 480489245 480489393 2.440000e-56 230.0
42 TraesCS2D01G082100 chr7D 93.986 582 35 0 2388 2969 423694610 423695191 0.000000e+00 881.0
43 TraesCS2D01G082100 chr1D 93.167 600 41 0 2388 2987 412870808 412871407 0.000000e+00 881.0
44 TraesCS2D01G082100 chr1D 92.833 600 43 0 2388 2987 412790573 412791172 0.000000e+00 870.0
45 TraesCS2D01G082100 chr6D 94.156 154 7 2 2987 3140 314072721 314072570 1.880000e-57 233.0
46 TraesCS2D01G082100 chr1B 94.702 151 6 1 2990 3140 34770928 34770780 1.880000e-57 233.0
47 TraesCS2D01G082100 chr5A 93.168 161 4 2 2987 3140 15344215 15344375 2.440000e-56 230.0
48 TraesCS2D01G082100 chr4D 93.506 154 8 1 2987 3140 370054675 370054826 8.760000e-56 228.0
49 TraesCS2D01G082100 chr4D 96.875 64 2 0 734 797 455907640 455907703 1.190000e-19 108.0
50 TraesCS2D01G082100 chr4D 100.000 41 0 0 800 840 455909910 455909950 3.360000e-10 76.8
51 TraesCS2D01G082100 chr4D 90.741 54 3 2 1484 1536 300858221 300858169 1.560000e-08 71.3
52 TraesCS2D01G082100 chrUn 93.519 108 2 2 734 840 355148649 355148752 4.190000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G082100 chr2D 35314074 35317213 3139 False 5799.000000 5799 100.000000 1 3140 1 chr2D.!!$F1 3139
1 TraesCS2D01G082100 chr2D 552731417 552732017 600 False 917.000000 917 94.176000 2387 2987 1 chr2D.!!$F3 600
2 TraesCS2D01G082100 chr2D 35321834 35322434 600 False 911.000000 911 94.010000 2388 2988 1 chr2D.!!$F2 600
3 TraesCS2D01G082100 chr2D 586127789 586128388 599 False 876.000000 876 93.000000 2388 2987 1 chr2D.!!$F4 599
4 TraesCS2D01G082100 chr2D 35240817 35243321 2504 True 838.000000 2039 85.618333 1 2386 3 chr2D.!!$R2 2385
5 TraesCS2D01G082100 chr2D 126964696 126965537 841 True 559.000000 887 93.744500 2388 3140 2 chr2D.!!$R3 752
6 TraesCS2D01G082100 chr2A 38515090 38517361 2271 True 913.000000 2034 87.272667 33 2340 3 chr2A.!!$R4 2307
7 TraesCS2D01G082100 chr2A 38569121 38571301 2180 False 887.333333 2034 88.672333 124 2334 3 chr2A.!!$F1 2210
8 TraesCS2D01G082100 chr2B 58344434 58345747 1313 False 2023.000000 2023 94.529000 845 2152 1 chr2B.!!$F3 1307
9 TraesCS2D01G082100 chr2B 58536337 58537801 1464 False 930.500000 1714 88.342500 598 2218 2 chr2B.!!$F4 1620
10 TraesCS2D01G082100 chr2B 58310458 58312709 2251 True 832.333333 1910 85.154667 1 2334 3 chr2B.!!$R3 2333
11 TraesCS2D01G082100 chr2B 58090631 58096793 6162 True 603.000000 1683 82.782750 1 2293 4 chr2B.!!$R1 2292
12 TraesCS2D01G082100 chr2B 58236235 58239437 3202 True 501.725000 1544 88.176750 35 2241 4 chr2B.!!$R2 2206
13 TraesCS2D01G082100 chr3D 15260523 15261249 726 False 902.000000 902 88.845000 2388 3140 1 chr3D.!!$F1 752
14 TraesCS2D01G082100 chr5D 246018809 246019654 845 True 569.500000 887 94.718500 2388 3140 2 chr5D.!!$R2 752
15 TraesCS2D01G082100 chr7D 423694610 423695191 581 False 881.000000 881 93.986000 2388 2969 1 chr7D.!!$F1 581
16 TraesCS2D01G082100 chr1D 412870808 412871407 599 False 881.000000 881 93.167000 2388 2987 1 chr1D.!!$F2 599
17 TraesCS2D01G082100 chr1D 412790573 412791172 599 False 870.000000 870 92.833000 2388 2987 1 chr1D.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 4863 0.033894 ACTCCCCTCGTTCTCCTCTC 60.034 60.0 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2690 7958 0.323178 TCTCCGTCCGCCTCTACTTT 60.323 55.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 2277 4.389374 CAATACCCCTCGCAATAACTGAT 58.611 43.478 0.00 0.00 0.00 2.90
74 2306 4.032356 TCGATGCGACATGCCATC 57.968 55.556 10.11 10.11 45.60 3.51
75 2307 1.143620 TCGATGCGACATGCCATCA 59.856 52.632 16.83 2.33 45.60 3.07
242 2512 1.732941 TTGCAATAGCGTGGGTACTG 58.267 50.000 0.00 0.00 46.23 2.74
278 2558 4.271661 TGATTGAGACCAATGCATTGCTA 58.728 39.130 30.15 15.57 42.66 3.49
281 2561 4.160642 TGAGACCAATGCATTGCTATCT 57.839 40.909 30.15 27.96 36.48 1.98
368 4365 2.513753 CATACCACCTTGCTTGTTCCA 58.486 47.619 0.00 0.00 0.00 3.53
372 4369 1.402787 CACCTTGCTTGTTCCAGGTT 58.597 50.000 0.00 0.00 0.00 3.50
373 4370 1.756538 CACCTTGCTTGTTCCAGGTTT 59.243 47.619 0.00 0.00 0.00 3.27
374 4371 2.955660 CACCTTGCTTGTTCCAGGTTTA 59.044 45.455 0.00 0.00 0.00 2.01
375 4372 3.004734 CACCTTGCTTGTTCCAGGTTTAG 59.995 47.826 0.00 0.00 0.00 1.85
376 4373 3.222603 CCTTGCTTGTTCCAGGTTTAGT 58.777 45.455 0.00 0.00 0.00 2.24
378 4375 1.953686 TGCTTGTTCCAGGTTTAGTGC 59.046 47.619 0.00 0.00 0.00 4.40
380 4377 3.181449 TGCTTGTTCCAGGTTTAGTGCTA 60.181 43.478 0.00 0.00 0.00 3.49
400 4457 4.318404 GCTATATTCAGTCGAAGTTGCAGC 60.318 45.833 0.00 0.00 33.74 5.25
401 4458 2.175878 ATTCAGTCGAAGTTGCAGCT 57.824 45.000 0.00 0.00 33.74 4.24
481 4539 5.498159 CGGTTTCATTCAACCACATATACG 58.502 41.667 3.61 0.00 45.97 3.06
500 4562 1.129998 CGCTGCAGATCTTTTGACTGG 59.870 52.381 20.43 0.00 32.26 4.00
502 4564 2.419324 GCTGCAGATCTTTTGACTGGAG 59.581 50.000 20.43 0.00 42.58 3.86
535 4597 2.557924 GGTGGTGCATGTCAAATTCAGA 59.442 45.455 0.00 0.00 0.00 3.27
546 4608 3.983344 GTCAAATTCAGAAAATGCACGCT 59.017 39.130 0.00 0.00 0.00 5.07
551 4623 0.516877 CAGAAAATGCACGCTTCCGA 59.483 50.000 0.00 0.00 38.29 4.55
613 4685 1.145571 AACTGTCAAGTAAGGCCCCA 58.854 50.000 0.00 0.00 34.77 4.96
690 4788 1.308998 CGACTGCACTTCCAACCTTT 58.691 50.000 0.00 0.00 0.00 3.11
691 4789 1.002468 CGACTGCACTTCCAACCTTTG 60.002 52.381 0.00 0.00 0.00 2.77
693 4791 0.318107 CTGCACTTCCAACCTTTGCG 60.318 55.000 0.00 0.00 35.90 4.85
694 4792 1.034838 TGCACTTCCAACCTTTGCGT 61.035 50.000 0.00 0.00 35.90 5.24
700 4801 1.890041 CCAACCTTTGCGTCGGTCA 60.890 57.895 0.00 0.00 31.87 4.02
702 4803 2.251642 AACCTTTGCGTCGGTCAGC 61.252 57.895 0.00 0.00 31.87 4.26
705 4806 2.203084 TTTGCGTCGGTCAGCCAA 60.203 55.556 0.00 0.00 34.09 4.52
735 4836 2.973694 ACTGCATTTTCATGGATGGC 57.026 45.000 0.00 0.00 28.97 4.40
736 4837 2.463752 ACTGCATTTTCATGGATGGCT 58.536 42.857 0.00 0.00 28.97 4.75
737 4838 2.167693 ACTGCATTTTCATGGATGGCTG 59.832 45.455 0.00 0.00 28.97 4.85
738 4839 2.167693 CTGCATTTTCATGGATGGCTGT 59.832 45.455 0.00 0.00 28.97 4.40
739 4840 3.363627 TGCATTTTCATGGATGGCTGTA 58.636 40.909 0.00 0.00 0.00 2.74
741 4842 4.222366 TGCATTTTCATGGATGGCTGTAAA 59.778 37.500 0.00 0.00 0.00 2.01
742 4843 4.567959 GCATTTTCATGGATGGCTGTAAAC 59.432 41.667 0.00 0.00 0.00 2.01
744 4845 4.782019 TTTCATGGATGGCTGTAAACAC 57.218 40.909 0.00 0.00 0.00 3.32
745 4846 3.719268 TCATGGATGGCTGTAAACACT 57.281 42.857 0.00 0.00 0.00 3.55
747 4848 2.489938 TGGATGGCTGTAAACACTCC 57.510 50.000 0.00 0.00 0.00 3.85
748 4849 1.004277 TGGATGGCTGTAAACACTCCC 59.996 52.381 0.00 0.00 0.00 4.30
749 4850 1.682087 GGATGGCTGTAAACACTCCCC 60.682 57.143 0.00 0.00 0.00 4.81
750 4851 1.282157 GATGGCTGTAAACACTCCCCT 59.718 52.381 0.00 0.00 0.00 4.79
751 4852 0.690762 TGGCTGTAAACACTCCCCTC 59.309 55.000 0.00 0.00 0.00 4.30
752 4853 0.391263 GGCTGTAAACACTCCCCTCG 60.391 60.000 0.00 0.00 0.00 4.63
753 4854 0.320697 GCTGTAAACACTCCCCTCGT 59.679 55.000 0.00 0.00 0.00 4.18
754 4855 1.270678 GCTGTAAACACTCCCCTCGTT 60.271 52.381 0.00 0.00 0.00 3.85
755 4856 2.685100 CTGTAAACACTCCCCTCGTTC 58.315 52.381 0.00 0.00 0.00 3.95
756 4857 2.299297 CTGTAAACACTCCCCTCGTTCT 59.701 50.000 0.00 0.00 0.00 3.01
757 4858 2.298163 TGTAAACACTCCCCTCGTTCTC 59.702 50.000 0.00 0.00 0.00 2.87
758 4859 0.685660 AAACACTCCCCTCGTTCTCC 59.314 55.000 0.00 0.00 0.00 3.71
759 4860 0.178929 AACACTCCCCTCGTTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
760 4861 0.612453 ACACTCCCCTCGTTCTCCTC 60.612 60.000 0.00 0.00 0.00 3.71
761 4862 0.323908 CACTCCCCTCGTTCTCCTCT 60.324 60.000 0.00 0.00 0.00 3.69
762 4863 0.033894 ACTCCCCTCGTTCTCCTCTC 60.034 60.000 0.00 0.00 0.00 3.20
763 4864 0.257616 CTCCCCTCGTTCTCCTCTCT 59.742 60.000 0.00 0.00 0.00 3.10
764 4865 0.033991 TCCCCTCGTTCTCCTCTCTG 60.034 60.000 0.00 0.00 0.00 3.35
765 4866 1.671901 CCCCTCGTTCTCCTCTCTGC 61.672 65.000 0.00 0.00 0.00 4.26
766 4867 0.682855 CCCTCGTTCTCCTCTCTGCT 60.683 60.000 0.00 0.00 0.00 4.24
767 4868 0.455410 CCTCGTTCTCCTCTCTGCTG 59.545 60.000 0.00 0.00 0.00 4.41
768 4869 0.179140 CTCGTTCTCCTCTCTGCTGC 60.179 60.000 0.00 0.00 0.00 5.25
769 4870 1.153667 CGTTCTCCTCTCTGCTGCC 60.154 63.158 0.00 0.00 0.00 4.85
770 4871 1.153667 GTTCTCCTCTCTGCTGCCG 60.154 63.158 0.00 0.00 0.00 5.69
771 4872 1.304464 TTCTCCTCTCTGCTGCCGA 60.304 57.895 0.00 0.00 0.00 5.54
772 4873 0.685785 TTCTCCTCTCTGCTGCCGAT 60.686 55.000 0.00 0.00 0.00 4.18
773 4874 1.106351 TCTCCTCTCTGCTGCCGATC 61.106 60.000 0.00 0.00 0.00 3.69
774 4875 1.076412 TCCTCTCTGCTGCCGATCT 60.076 57.895 0.00 0.00 0.00 2.75
775 4876 1.067749 CCTCTCTGCTGCCGATCTG 59.932 63.158 0.00 0.00 0.00 2.90
776 4877 1.067749 CTCTCTGCTGCCGATCTGG 59.932 63.158 0.00 0.00 42.50 3.86
777 4878 1.674764 CTCTCTGCTGCCGATCTGGT 61.675 60.000 0.00 0.00 41.21 4.00
778 4879 1.521010 CTCTGCTGCCGATCTGGTG 60.521 63.158 0.00 1.63 41.21 4.17
779 4880 2.513204 CTGCTGCCGATCTGGTGG 60.513 66.667 0.00 0.00 41.21 4.61
780 4881 3.320879 CTGCTGCCGATCTGGTGGT 62.321 63.158 0.00 0.00 41.21 4.16
781 4882 2.045926 GCTGCCGATCTGGTGGTT 60.046 61.111 5.66 0.00 41.21 3.67
782 4883 2.401766 GCTGCCGATCTGGTGGTTG 61.402 63.158 5.66 0.00 41.21 3.77
783 4884 1.003355 CTGCCGATCTGGTGGTTGT 60.003 57.895 5.66 0.00 41.21 3.32
784 4885 0.249120 CTGCCGATCTGGTGGTTGTA 59.751 55.000 5.66 0.00 41.21 2.41
785 4886 0.036765 TGCCGATCTGGTGGTTGTAC 60.037 55.000 5.66 0.00 41.21 2.90
786 4887 0.249398 GCCGATCTGGTGGTTGTACT 59.751 55.000 0.00 0.00 41.21 2.73
787 4888 1.338769 GCCGATCTGGTGGTTGTACTT 60.339 52.381 0.00 0.00 41.21 2.24
788 4889 2.874457 GCCGATCTGGTGGTTGTACTTT 60.874 50.000 0.00 0.00 41.21 2.66
789 4890 2.742053 CCGATCTGGTGGTTGTACTTTG 59.258 50.000 0.00 0.00 0.00 2.77
790 4891 3.399330 CGATCTGGTGGTTGTACTTTGT 58.601 45.455 0.00 0.00 0.00 2.83
791 4892 3.813166 CGATCTGGTGGTTGTACTTTGTT 59.187 43.478 0.00 0.00 0.00 2.83
792 4893 4.992319 CGATCTGGTGGTTGTACTTTGTTA 59.008 41.667 0.00 0.00 0.00 2.41
793 4894 5.107220 CGATCTGGTGGTTGTACTTTGTTAC 60.107 44.000 0.00 0.00 0.00 2.50
794 4895 4.121317 TCTGGTGGTTGTACTTTGTTACG 58.879 43.478 0.00 0.00 0.00 3.18
795 4896 3.204526 TGGTGGTTGTACTTTGTTACGG 58.795 45.455 0.00 0.00 0.00 4.02
796 4897 2.031769 GGTGGTTGTACTTTGTTACGGC 60.032 50.000 0.00 0.00 0.00 5.68
797 4898 2.031769 GTGGTTGTACTTTGTTACGGCC 60.032 50.000 0.00 0.00 0.00 6.13
798 4899 1.195222 GGTTGTACTTTGTTACGGCCG 59.805 52.381 26.86 26.86 0.00 6.13
799 4900 1.195222 GTTGTACTTTGTTACGGCCGG 59.805 52.381 31.76 12.27 0.00 6.13
800 4901 0.950071 TGTACTTTGTTACGGCCGGC 60.950 55.000 31.76 21.18 0.00 6.13
801 4902 0.671472 GTACTTTGTTACGGCCGGCT 60.671 55.000 31.76 12.49 0.00 5.52
802 4903 0.035176 TACTTTGTTACGGCCGGCTT 59.965 50.000 31.76 16.52 0.00 4.35
803 4904 1.209127 CTTTGTTACGGCCGGCTTG 59.791 57.895 31.76 21.56 0.00 4.01
804 4905 2.796245 CTTTGTTACGGCCGGCTTGC 62.796 60.000 31.76 14.77 0.00 4.01
813 4914 3.291383 CCGGCTTGCCGGTTTGAA 61.291 61.111 36.52 0.00 46.95 2.69
814 4915 2.725008 CGGCTTGCCGGTTTGAAA 59.275 55.556 24.53 0.00 0.00 2.69
815 4916 1.288752 CGGCTTGCCGGTTTGAAAT 59.711 52.632 24.53 0.00 0.00 2.17
816 4917 1.008361 CGGCTTGCCGGTTTGAAATG 61.008 55.000 24.53 0.00 0.00 2.32
817 4918 1.291184 GGCTTGCCGGTTTGAAATGC 61.291 55.000 1.90 0.00 0.00 3.56
818 4919 0.599728 GCTTGCCGGTTTGAAATGCA 60.600 50.000 1.90 0.00 0.00 3.96
819 4920 1.940752 GCTTGCCGGTTTGAAATGCAT 60.941 47.619 1.90 0.00 0.00 3.96
820 4921 2.673610 GCTTGCCGGTTTGAAATGCATA 60.674 45.455 1.90 0.00 0.00 3.14
821 4922 3.784338 CTTGCCGGTTTGAAATGCATAT 58.216 40.909 1.90 0.00 0.00 1.78
822 4923 3.883830 TGCCGGTTTGAAATGCATATT 57.116 38.095 1.90 0.00 0.00 1.28
823 4924 3.779759 TGCCGGTTTGAAATGCATATTC 58.220 40.909 1.90 7.11 0.00 1.75
824 4925 3.194329 TGCCGGTTTGAAATGCATATTCA 59.806 39.130 15.74 15.74 35.11 2.57
825 4926 3.798337 GCCGGTTTGAAATGCATATTCAG 59.202 43.478 17.70 11.03 38.01 3.02
826 4927 4.362279 CCGGTTTGAAATGCATATTCAGG 58.638 43.478 17.70 13.87 38.01 3.86
827 4928 4.142182 CCGGTTTGAAATGCATATTCAGGT 60.142 41.667 17.70 0.00 38.01 4.00
828 4929 4.799949 CGGTTTGAAATGCATATTCAGGTG 59.200 41.667 17.70 10.10 38.01 4.00
829 4930 5.111293 GGTTTGAAATGCATATTCAGGTGG 58.889 41.667 17.70 0.00 38.01 4.61
830 4931 5.111293 GTTTGAAATGCATATTCAGGTGGG 58.889 41.667 17.70 0.00 38.01 4.61
831 4932 3.298619 TGAAATGCATATTCAGGTGGGG 58.701 45.455 15.74 0.00 33.15 4.96
832 4933 2.386829 AATGCATATTCAGGTGGGGG 57.613 50.000 0.00 0.00 0.00 5.40
833 4934 1.533187 ATGCATATTCAGGTGGGGGA 58.467 50.000 0.00 0.00 0.00 4.81
834 4935 0.846015 TGCATATTCAGGTGGGGGAG 59.154 55.000 0.00 0.00 0.00 4.30
835 4936 0.846693 GCATATTCAGGTGGGGGAGT 59.153 55.000 0.00 0.00 0.00 3.85
836 4937 1.215423 GCATATTCAGGTGGGGGAGTT 59.785 52.381 0.00 0.00 0.00 3.01
837 4938 2.749800 GCATATTCAGGTGGGGGAGTTC 60.750 54.545 0.00 0.00 0.00 3.01
838 4939 2.661176 TATTCAGGTGGGGGAGTTCT 57.339 50.000 0.00 0.00 0.00 3.01
839 4940 1.290134 ATTCAGGTGGGGGAGTTCTC 58.710 55.000 0.00 0.00 0.00 2.87
840 4941 0.193574 TTCAGGTGGGGGAGTTCTCT 59.806 55.000 0.00 0.00 0.00 3.10
880 4991 5.234543 GTCACTTTCAGTTAACCACTCACTC 59.765 44.000 0.88 0.00 30.92 3.51
882 4993 5.584649 CACTTTCAGTTAACCACTCACTCAA 59.415 40.000 0.88 0.00 30.92 3.02
889 5000 0.694444 ACCACTCACTCAACCCCACT 60.694 55.000 0.00 0.00 0.00 4.00
890 5001 0.474184 CCACTCACTCAACCCCACTT 59.526 55.000 0.00 0.00 0.00 3.16
895 5009 0.036875 CACTCAACCCCACTTCCCTC 59.963 60.000 0.00 0.00 0.00 4.30
958 5098 2.047179 GTGGGTCGAGCACCTTCC 60.047 66.667 17.59 0.00 45.95 3.46
989 5133 6.095440 CCTTGGATATTTGTAAAGGTCAGTGG 59.905 42.308 0.00 0.00 34.04 4.00
1005 5149 1.280421 AGTGGACTGAAGAAGATGGGC 59.720 52.381 0.00 0.00 0.00 5.36
1081 5226 7.528996 TTCACTGCCTGTAAGTTACTAACTA 57.471 36.000 14.00 0.00 41.91 2.24
1084 5229 6.807230 CACTGCCTGTAAGTTACTAACTACAG 59.193 42.308 14.00 19.38 41.91 2.74
1163 5318 6.346096 AGTAGAACTTCAACACAGTTTGCTA 58.654 36.000 0.00 0.00 34.49 3.49
1260 6494 4.426313 TCCGAGAGCTGCCCGAGA 62.426 66.667 0.00 2.40 0.00 4.04
2143 7377 2.333926 TCGTCAACGCCAAGTAAGATG 58.666 47.619 0.00 0.00 39.60 2.90
2162 7396 0.826715 GGAGCTAGTGATCAGTGGCA 59.173 55.000 32.58 6.50 40.23 4.92
2180 7414 0.892755 CACCCTAGTGGCAAGACGTA 59.107 55.000 0.00 0.00 40.55 3.57
2182 7416 1.549170 ACCCTAGTGGCAAGACGTAAG 59.451 52.381 0.00 0.00 40.65 2.34
2255 7506 5.606329 TGATGAAGGGACCATGTATCATGTA 59.394 40.000 8.57 0.00 0.00 2.29
2257 7508 6.114187 TGAAGGGACCATGTATCATGTATC 57.886 41.667 8.57 6.04 0.00 2.24
2260 7511 6.058553 AGGGACCATGTATCATGTATCATG 57.941 41.667 14.68 14.68 37.83 3.07
2261 7512 5.549228 AGGGACCATGTATCATGTATCATGT 59.451 40.000 17.75 10.68 36.81 3.21
2262 7513 5.645067 GGGACCATGTATCATGTATCATGTG 59.355 44.000 17.75 13.78 36.81 3.21
2263 7514 6.233434 GGACCATGTATCATGTATCATGTGT 58.767 40.000 17.75 15.63 36.81 3.72
2264 7515 6.148315 GGACCATGTATCATGTATCATGTGTG 59.852 42.308 17.75 10.25 36.81 3.82
2265 7516 5.471116 ACCATGTATCATGTATCATGTGTGC 59.529 40.000 17.75 4.97 36.81 4.57
2266 7517 5.390145 CCATGTATCATGTATCATGTGTGCG 60.390 44.000 17.75 0.00 36.81 5.34
2267 7518 4.942852 TGTATCATGTATCATGTGTGCGA 58.057 39.130 9.13 0.00 0.00 5.10
2379 7647 2.918712 ATGGAATTCTGCCGACCTAG 57.081 50.000 5.23 0.00 0.00 3.02
2479 7747 8.414003 GGTATGCATCTCATATCGATACCTAAA 58.586 37.037 7.41 0.00 39.63 1.85
2496 7764 3.743911 CCTAAACATGTGAGCACGTACAA 59.256 43.478 0.00 0.00 0.00 2.41
2591 7859 1.926489 ATACCCTCCGGTTGGCCAA 60.926 57.895 16.05 16.05 40.58 4.52
2592 7860 1.502527 ATACCCTCCGGTTGGCCAAA 61.503 55.000 22.47 3.06 40.58 3.28
2690 7958 0.824109 CGATGCAGGGGAAGTAGTGA 59.176 55.000 0.00 0.00 0.00 3.41
2734 8002 3.838271 GGATCGGGAGCAGTCGCA 61.838 66.667 0.00 0.00 42.27 5.10
2741 8009 1.299014 GGAGCAGTCGCATCGAGAG 60.299 63.158 0.00 0.00 42.27 3.20
2749 8017 4.292178 GCATCGAGAGGCTCCCCG 62.292 72.222 11.71 15.18 34.92 5.73
2797 8065 1.067071 GGATCTCGAACGACAGGGTTT 60.067 52.381 0.00 0.00 0.00 3.27
2819 8087 4.154347 GGCACCTGCTCTCCCGAG 62.154 72.222 0.00 0.00 41.70 4.63
2868 8136 2.727544 GCCGGAAGCAGCACAAAA 59.272 55.556 5.05 0.00 42.97 2.44
2871 8139 0.385390 CCGGAAGCAGCACAAAAAGT 59.615 50.000 0.00 0.00 0.00 2.66
2919 8187 1.248486 CGAGAGGGAGTGAGTGAACA 58.752 55.000 0.00 0.00 0.00 3.18
2945 8213 1.172812 GGGTTCACTTCACTGGCCAC 61.173 60.000 0.00 0.00 0.00 5.01
2980 8248 3.628989 CGTCAGGTAGATGGGCCA 58.371 61.111 9.61 9.61 0.00 5.36
2998 8359 2.172900 AGGGCCAACCATTCCTGAA 58.827 52.632 6.18 0.00 43.89 3.02
3133 8513 4.051478 TCCTATTCCCAAGCTCCCAATAA 58.949 43.478 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 2306 6.591062 CCATAAAACAAAGTGGAATGATGGTG 59.409 38.462 0.00 0.00 33.53 4.17
75 2307 6.269769 ACCATAAAACAAAGTGGAATGATGGT 59.730 34.615 0.00 0.00 38.75 3.55
242 2512 4.396478 GTCTCAATCAGGCTTAAGTTTCCC 59.604 45.833 4.02 0.00 0.00 3.97
281 2561 9.424319 GTGACTATCTTAAACATCTGAAACTCA 57.576 33.333 0.00 0.00 0.00 3.41
341 4335 1.076777 CAAGGTGGTATGGGGGCAG 60.077 63.158 0.00 0.00 0.00 4.85
343 4337 2.442087 GCAAGGTGGTATGGGGGC 60.442 66.667 0.00 0.00 0.00 5.80
368 4365 6.710597 TCGACTGAATATAGCACTAAACCT 57.289 37.500 0.00 0.00 0.00 3.50
372 4369 6.475727 GCAACTTCGACTGAATATAGCACTAA 59.524 38.462 0.00 0.00 32.61 2.24
373 4370 5.977725 GCAACTTCGACTGAATATAGCACTA 59.022 40.000 0.00 0.00 32.61 2.74
374 4371 4.806247 GCAACTTCGACTGAATATAGCACT 59.194 41.667 0.00 0.00 32.61 4.40
375 4372 4.566759 TGCAACTTCGACTGAATATAGCAC 59.433 41.667 0.00 0.00 32.61 4.40
376 4373 4.754322 TGCAACTTCGACTGAATATAGCA 58.246 39.130 0.00 0.00 32.61 3.49
378 4375 5.046529 AGCTGCAACTTCGACTGAATATAG 58.953 41.667 1.02 0.00 32.61 1.31
380 4377 3.866651 AGCTGCAACTTCGACTGAATAT 58.133 40.909 1.02 0.00 32.61 1.28
400 4457 6.040391 TGGTTTCTTCCACCTCAATTTACAAG 59.960 38.462 0.00 0.00 35.07 3.16
401 4458 5.894393 TGGTTTCTTCCACCTCAATTTACAA 59.106 36.000 0.00 0.00 35.07 2.41
481 4539 2.419324 CTCCAGTCAAAAGATCTGCAGC 59.581 50.000 9.47 0.00 0.00 5.25
500 4562 1.002087 CACCACCACCTTACTCCACTC 59.998 57.143 0.00 0.00 0.00 3.51
502 4564 0.605589 GCACCACCACCTTACTCCAC 60.606 60.000 0.00 0.00 0.00 4.02
535 4597 0.171007 CCATCGGAAGCGTGCATTTT 59.829 50.000 0.00 0.00 0.00 1.82
546 4608 0.258484 TACCGTCCCTACCATCGGAA 59.742 55.000 9.37 0.00 44.86 4.30
551 4623 4.150359 CAGTTCTATACCGTCCCTACCAT 58.850 47.826 0.00 0.00 0.00 3.55
661 4759 3.558418 GGAAGTGCAGTCGTAACAGAAAA 59.442 43.478 0.00 0.00 0.00 2.29
694 4792 2.111999 CTTCCTGGTTGGCTGACCGA 62.112 60.000 6.22 0.00 42.83 4.69
700 4801 1.545651 GCAGTTACTTCCTGGTTGGCT 60.546 52.381 0.00 0.00 35.26 4.75
702 4803 2.270352 TGCAGTTACTTCCTGGTTGG 57.730 50.000 0.00 0.00 37.10 3.77
705 4806 4.469657 TGAAAATGCAGTTACTTCCTGGT 58.530 39.130 0.00 0.00 0.00 4.00
735 4836 2.299297 AGAACGAGGGGAGTGTTTACAG 59.701 50.000 0.00 0.00 0.00 2.74
736 4837 2.298163 GAGAACGAGGGGAGTGTTTACA 59.702 50.000 0.00 0.00 0.00 2.41
737 4838 2.353505 GGAGAACGAGGGGAGTGTTTAC 60.354 54.545 0.00 0.00 0.00 2.01
738 4839 1.897802 GGAGAACGAGGGGAGTGTTTA 59.102 52.381 0.00 0.00 0.00 2.01
739 4840 0.685660 GGAGAACGAGGGGAGTGTTT 59.314 55.000 0.00 0.00 0.00 2.83
741 4842 0.612453 GAGGAGAACGAGGGGAGTGT 60.612 60.000 0.00 0.00 0.00 3.55
742 4843 0.323908 AGAGGAGAACGAGGGGAGTG 60.324 60.000 0.00 0.00 0.00 3.51
744 4845 0.257616 AGAGAGGAGAACGAGGGGAG 59.742 60.000 0.00 0.00 0.00 4.30
745 4846 0.033991 CAGAGAGGAGAACGAGGGGA 60.034 60.000 0.00 0.00 0.00 4.81
747 4848 0.682855 AGCAGAGAGGAGAACGAGGG 60.683 60.000 0.00 0.00 0.00 4.30
748 4849 0.455410 CAGCAGAGAGGAGAACGAGG 59.545 60.000 0.00 0.00 0.00 4.63
749 4850 0.179140 GCAGCAGAGAGGAGAACGAG 60.179 60.000 0.00 0.00 0.00 4.18
750 4851 1.599606 GGCAGCAGAGAGGAGAACGA 61.600 60.000 0.00 0.00 0.00 3.85
751 4852 1.153667 GGCAGCAGAGAGGAGAACG 60.154 63.158 0.00 0.00 0.00 3.95
752 4853 1.153667 CGGCAGCAGAGAGGAGAAC 60.154 63.158 0.00 0.00 0.00 3.01
753 4854 0.685785 ATCGGCAGCAGAGAGGAGAA 60.686 55.000 0.65 0.00 0.00 2.87
754 4855 1.076412 ATCGGCAGCAGAGAGGAGA 60.076 57.895 0.65 0.00 0.00 3.71
755 4856 1.108727 AGATCGGCAGCAGAGAGGAG 61.109 60.000 0.65 0.00 0.00 3.69
756 4857 1.076412 AGATCGGCAGCAGAGAGGA 60.076 57.895 0.65 0.00 0.00 3.71
757 4858 1.067749 CAGATCGGCAGCAGAGAGG 59.932 63.158 0.65 0.00 0.00 3.69
758 4859 1.067749 CCAGATCGGCAGCAGAGAG 59.932 63.158 0.65 0.00 0.00 3.20
759 4860 1.683707 ACCAGATCGGCAGCAGAGA 60.684 57.895 0.65 0.00 39.03 3.10
760 4861 1.521010 CACCAGATCGGCAGCAGAG 60.521 63.158 0.65 0.00 39.03 3.35
761 4862 2.580815 CACCAGATCGGCAGCAGA 59.419 61.111 0.00 0.00 39.03 4.26
762 4863 2.513204 CCACCAGATCGGCAGCAG 60.513 66.667 0.00 0.00 39.03 4.24
763 4864 2.894257 AACCACCAGATCGGCAGCA 61.894 57.895 0.00 0.00 39.03 4.41
764 4865 2.045926 AACCACCAGATCGGCAGC 60.046 61.111 3.85 0.00 39.03 5.25
765 4866 0.249120 TACAACCACCAGATCGGCAG 59.751 55.000 3.85 0.00 39.03 4.85
766 4867 0.036765 GTACAACCACCAGATCGGCA 60.037 55.000 3.85 0.00 39.03 5.69
767 4868 0.249398 AGTACAACCACCAGATCGGC 59.751 55.000 0.00 0.00 39.03 5.54
768 4869 2.742053 CAAAGTACAACCACCAGATCGG 59.258 50.000 0.00 2.55 42.50 4.18
769 4870 3.399330 ACAAAGTACAACCACCAGATCG 58.601 45.455 0.00 0.00 0.00 3.69
770 4871 5.107220 CGTAACAAAGTACAACCACCAGATC 60.107 44.000 0.00 0.00 0.00 2.75
771 4872 4.753107 CGTAACAAAGTACAACCACCAGAT 59.247 41.667 0.00 0.00 0.00 2.90
772 4873 4.121317 CGTAACAAAGTACAACCACCAGA 58.879 43.478 0.00 0.00 0.00 3.86
773 4874 3.249080 CCGTAACAAAGTACAACCACCAG 59.751 47.826 0.00 0.00 0.00 4.00
774 4875 3.204526 CCGTAACAAAGTACAACCACCA 58.795 45.455 0.00 0.00 0.00 4.17
775 4876 2.031769 GCCGTAACAAAGTACAACCACC 60.032 50.000 0.00 0.00 0.00 4.61
776 4877 2.031769 GGCCGTAACAAAGTACAACCAC 60.032 50.000 0.00 0.00 0.00 4.16
777 4878 2.220313 GGCCGTAACAAAGTACAACCA 58.780 47.619 0.00 0.00 0.00 3.67
778 4879 1.195222 CGGCCGTAACAAAGTACAACC 59.805 52.381 19.50 0.00 0.00 3.77
779 4880 1.195222 CCGGCCGTAACAAAGTACAAC 59.805 52.381 26.12 0.00 0.00 3.32
780 4881 1.510776 CCGGCCGTAACAAAGTACAA 58.489 50.000 26.12 0.00 0.00 2.41
781 4882 0.950071 GCCGGCCGTAACAAAGTACA 60.950 55.000 26.12 0.00 0.00 2.90
782 4883 0.671472 AGCCGGCCGTAACAAAGTAC 60.671 55.000 26.15 0.00 0.00 2.73
783 4884 0.035176 AAGCCGGCCGTAACAAAGTA 59.965 50.000 26.15 0.00 0.00 2.24
784 4885 1.228033 AAGCCGGCCGTAACAAAGT 60.228 52.632 26.15 0.00 0.00 2.66
785 4886 1.209127 CAAGCCGGCCGTAACAAAG 59.791 57.895 26.15 7.77 0.00 2.77
786 4887 2.910345 GCAAGCCGGCCGTAACAAA 61.910 57.895 26.15 0.00 0.00 2.83
787 4888 3.358707 GCAAGCCGGCCGTAACAA 61.359 61.111 26.15 0.00 0.00 2.83
798 4899 1.291184 GCATTTCAAACCGGCAAGCC 61.291 55.000 0.00 0.00 0.00 4.35
799 4900 0.599728 TGCATTTCAAACCGGCAAGC 60.600 50.000 0.00 0.00 0.00 4.01
800 4901 2.083167 ATGCATTTCAAACCGGCAAG 57.917 45.000 0.00 0.00 38.08 4.01
801 4902 3.883830 ATATGCATTTCAAACCGGCAA 57.116 38.095 3.54 0.00 38.08 4.52
802 4903 3.194329 TGAATATGCATTTCAAACCGGCA 59.806 39.130 3.54 0.00 39.03 5.69
803 4904 3.779759 TGAATATGCATTTCAAACCGGC 58.220 40.909 3.54 0.00 30.44 6.13
804 4905 4.142182 ACCTGAATATGCATTTCAAACCGG 60.142 41.667 18.51 17.61 32.98 5.28
805 4906 4.799949 CACCTGAATATGCATTTCAAACCG 59.200 41.667 18.51 10.90 32.98 4.44
806 4907 5.111293 CCACCTGAATATGCATTTCAAACC 58.889 41.667 18.51 0.98 32.98 3.27
807 4908 5.111293 CCCACCTGAATATGCATTTCAAAC 58.889 41.667 18.51 3.62 32.98 2.93
808 4909 4.161942 CCCCACCTGAATATGCATTTCAAA 59.838 41.667 18.51 0.00 32.98 2.69
809 4910 3.705579 CCCCACCTGAATATGCATTTCAA 59.294 43.478 18.51 0.00 32.98 2.69
810 4911 3.298619 CCCCACCTGAATATGCATTTCA 58.701 45.455 3.54 13.37 0.00 2.69
811 4912 2.629617 CCCCCACCTGAATATGCATTTC 59.370 50.000 3.54 9.38 0.00 2.17
812 4913 2.247111 TCCCCCACCTGAATATGCATTT 59.753 45.455 3.54 0.00 0.00 2.32
813 4914 1.858910 TCCCCCACCTGAATATGCATT 59.141 47.619 3.54 0.00 0.00 3.56
814 4915 1.426598 CTCCCCCACCTGAATATGCAT 59.573 52.381 3.79 3.79 0.00 3.96
815 4916 0.846015 CTCCCCCACCTGAATATGCA 59.154 55.000 0.00 0.00 0.00 3.96
816 4917 0.846693 ACTCCCCCACCTGAATATGC 59.153 55.000 0.00 0.00 0.00 3.14
817 4918 2.780010 AGAACTCCCCCACCTGAATATG 59.220 50.000 0.00 0.00 0.00 1.78
818 4919 3.049344 GAGAACTCCCCCACCTGAATAT 58.951 50.000 0.00 0.00 0.00 1.28
819 4920 2.045885 AGAGAACTCCCCCACCTGAATA 59.954 50.000 0.00 0.00 0.00 1.75
820 4921 1.203492 AGAGAACTCCCCCACCTGAAT 60.203 52.381 0.00 0.00 0.00 2.57
821 4922 0.193574 AGAGAACTCCCCCACCTGAA 59.806 55.000 0.00 0.00 0.00 3.02
822 4923 1.089978 TAGAGAACTCCCCCACCTGA 58.910 55.000 0.00 0.00 0.00 3.86
823 4924 1.196012 GTAGAGAACTCCCCCACCTG 58.804 60.000 0.00 0.00 0.00 4.00
824 4925 0.042881 GGTAGAGAACTCCCCCACCT 59.957 60.000 0.00 0.00 0.00 4.00
825 4926 0.252558 TGGTAGAGAACTCCCCCACC 60.253 60.000 6.13 6.02 0.00 4.61
826 4927 1.763545 GATGGTAGAGAACTCCCCCAC 59.236 57.143 10.71 4.38 34.17 4.61
827 4928 1.651770 AGATGGTAGAGAACTCCCCCA 59.348 52.381 10.84 10.84 35.30 4.96
828 4929 2.321719 GAGATGGTAGAGAACTCCCCC 58.678 57.143 0.00 0.14 0.00 5.40
829 4930 2.321719 GGAGATGGTAGAGAACTCCCC 58.678 57.143 0.00 0.47 40.58 4.81
830 4931 3.033659 TGGAGATGGTAGAGAACTCCC 57.966 52.381 0.00 0.00 44.29 4.30
831 4932 4.202305 CCATTGGAGATGGTAGAGAACTCC 60.202 50.000 0.00 0.00 44.90 3.85
832 4933 4.954875 CCATTGGAGATGGTAGAGAACTC 58.045 47.826 0.00 0.00 34.56 3.01
880 4991 2.763902 GGGAGGGAAGTGGGGTTG 59.236 66.667 0.00 0.00 0.00 3.77
882 4993 3.552911 AGGGGAGGGAAGTGGGGT 61.553 66.667 0.00 0.00 0.00 4.95
889 5000 1.541368 CAAGTGGGAGGGGAGGGAA 60.541 63.158 0.00 0.00 0.00 3.97
890 5001 2.124996 CAAGTGGGAGGGGAGGGA 59.875 66.667 0.00 0.00 0.00 4.20
989 5133 1.556911 TCAGGCCCATCTTCTTCAGTC 59.443 52.381 0.00 0.00 0.00 3.51
1005 5149 0.461693 GCACTAGGCTTGAGCTCAGG 60.462 60.000 20.86 20.86 41.70 3.86
1081 5226 4.207955 GGAAACTGAGGAAGGAAAACTGT 58.792 43.478 0.00 0.00 0.00 3.55
1084 5229 3.211865 ACGGAAACTGAGGAAGGAAAAC 58.788 45.455 0.00 0.00 0.00 2.43
1163 5318 0.464036 CATGGCATGGCAGCAGATTT 59.536 50.000 27.02 5.75 35.83 2.17
1212 5379 4.742201 CTCAGACCACCGCCACCG 62.742 72.222 0.00 0.00 0.00 4.94
1260 6494 1.388065 CCTTCACGATCTCCTCCGCT 61.388 60.000 0.00 0.00 0.00 5.52
2143 7377 0.826715 TGCCACTGATCACTAGCTCC 59.173 55.000 0.00 0.00 0.00 4.70
2162 7396 1.549170 CTTACGTCTTGCCACTAGGGT 59.451 52.381 0.00 0.00 39.65 4.34
2180 7414 2.415168 GCACATACATACACACACGCTT 59.585 45.455 0.00 0.00 0.00 4.68
2182 7416 1.999735 AGCACATACATACACACACGC 59.000 47.619 0.00 0.00 0.00 5.34
2209 7454 5.132648 TCACTCTGAATTATTAGTGCCCCAT 59.867 40.000 8.11 0.00 39.33 4.00
2255 7506 0.746923 AGCATGCTCGCACACATGAT 60.747 50.000 16.30 4.69 45.23 2.45
2257 7508 0.796870 CAAGCATGCTCGCACACATG 60.797 55.000 22.93 9.12 45.19 3.21
2379 7647 7.281100 AGTGCTAATATTTCCAACAGTTCTAGC 59.719 37.037 0.00 0.00 0.00 3.42
2496 7764 9.477484 GTTCATAGATGTTTCGGTTCTATGTAT 57.523 33.333 15.15 0.00 44.88 2.29
2690 7958 0.323178 TCTCCGTCCGCCTCTACTTT 60.323 55.000 0.00 0.00 0.00 2.66
2734 8002 0.976073 TTTTCGGGGAGCCTCTCGAT 60.976 55.000 10.39 0.00 0.00 3.59
2741 8009 1.749063 CAATAAGGTTTTCGGGGAGCC 59.251 52.381 0.00 0.00 0.00 4.70
2749 8017 3.119602 GGGAGAACGGCAATAAGGTTTTC 60.120 47.826 0.00 0.00 0.00 2.29
2797 8065 3.071206 GAGAGCAGGTGCCTCCGA 61.071 66.667 0.00 0.00 43.38 4.55
2868 8136 4.553330 ACCGTCATCTATTGTTCCACTT 57.447 40.909 0.00 0.00 0.00 3.16
2871 8139 4.141801 CCCTAACCGTCATCTATTGTTCCA 60.142 45.833 0.00 0.00 0.00 3.53
2878 8146 4.037208 CGTACAACCCTAACCGTCATCTAT 59.963 45.833 0.00 0.00 0.00 1.98
2919 8187 3.325135 CCAGTGAAGTGAACCCTAACTCT 59.675 47.826 0.00 0.00 0.00 3.24
2945 8213 0.673644 CGGCCCATATAAGAAGGCGG 60.674 60.000 0.00 0.00 46.75 6.13
2959 8227 2.808206 CCCATCTACCTGACGGCCC 61.808 68.421 0.00 0.00 0.00 5.80
2980 8248 0.251787 GTTCAGGAATGGTTGGCCCT 60.252 55.000 0.00 0.00 0.00 5.19
2998 8359 1.402325 GCCGAAGCTTATTTTTGCCGT 60.402 47.619 0.00 0.00 35.50 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.