Multiple sequence alignment - TraesCS2D01G081900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G081900 chr2D 100.000 2732 0 0 414 3145 35242791 35240060 0.000000e+00 5046.0
1 TraesCS2D01G081900 chr2D 90.695 1569 92 32 850 2388 35314915 35316459 0.000000e+00 2039.0
2 TraesCS2D01G081900 chr2D 81.481 378 37 14 461 837 35314461 35314806 2.390000e-71 279.0
3 TraesCS2D01G081900 chr2D 100.000 93 0 0 1 93 35243204 35243112 4.170000e-39 172.0
4 TraesCS2D01G081900 chr2D 97.403 77 2 0 17 93 35314197 35314273 7.080000e-27 132.0
5 TraesCS2D01G081900 chr2B 89.569 1879 102 43 414 2276 58092453 58090653 0.000000e+00 2298.0
6 TraesCS2D01G081900 chr2B 89.414 1757 104 38 461 2208 58312263 58310580 0.000000e+00 2139.0
7 TraesCS2D01G081900 chr2B 88.933 1780 112 41 424 2157 58344007 58345747 0.000000e+00 2117.0
8 TraesCS2D01G081900 chr2B 89.421 1503 80 31 731 2223 58536368 58537801 0.000000e+00 1821.0
9 TraesCS2D01G081900 chr2B 95.000 1000 42 4 1249 2248 58237226 58236235 0.000000e+00 1563.0
10 TraesCS2D01G081900 chr2B 80.414 531 56 26 731 1232 58238806 58238295 8.290000e-96 361.0
11 TraesCS2D01G081900 chr2B 84.733 262 21 9 1211 1467 57787767 57788014 8.710000e-61 244.0
12 TraesCS2D01G081900 chr2B 77.865 384 27 29 2098 2432 58537899 58538273 5.360000e-43 185.0
13 TraesCS2D01G081900 chr2B 93.750 96 5 1 417 512 58239047 58238953 3.270000e-30 143.0
14 TraesCS2D01G081900 chr2B 87.000 100 6 3 1 93 58312582 58312483 4.290000e-19 106.0
15 TraesCS2D01G081900 chr2B 96.667 60 2 0 3086 3145 707169199 707169140 2.000000e-17 100.0
16 TraesCS2D01G081900 chr2B 87.654 81 5 1 2598 2673 58088403 58088323 4.320000e-14 89.8
17 TraesCS2D01G081900 chr2B 88.158 76 8 1 18 92 58096668 58096593 4.320000e-14 89.8
18 TraesCS2D01G081900 chr2B 95.349 43 2 0 2498 2540 58235965 58235923 5.630000e-08 69.4
19 TraesCS2D01G081900 chr2A 89.827 1445 80 29 905 2309 38569859 38571276 0.000000e+00 1792.0
20 TraesCS2D01G081900 chr2A 89.806 1442 80 29 908 2309 38516535 38515121 0.000000e+00 1786.0
21 TraesCS2D01G081900 chr2A 95.011 461 21 1 414 874 38569396 38569854 0.000000e+00 723.0
22 TraesCS2D01G081900 chr2A 83.585 463 52 10 414 874 38516983 38516543 2.260000e-111 412.0
23 TraesCS2D01G081900 chr2A 79.855 551 53 32 1904 2431 38398170 38397655 1.790000e-92 350.0
24 TraesCS2D01G081900 chr2A 86.335 161 12 2 2597 2747 38394366 38394206 1.940000e-37 167.0
25 TraesCS2D01G081900 chr2A 96.774 93 3 0 1 93 38569105 38569197 4.200000e-34 156.0
26 TraesCS2D01G081900 chr2A 85.926 135 17 2 2329 2463 38511028 38510896 3.270000e-30 143.0
27 TraesCS2D01G081900 chr2A 93.478 92 6 0 1 92 38517282 38517191 1.520000e-28 137.0
28 TraesCS2D01G081900 chr2A 96.154 52 2 0 39 90 38529479 38529428 5.590000e-13 86.1
29 TraesCS2D01G081900 chr4B 89.147 129 13 1 3018 3145 181195066 181195194 3.250000e-35 159.0
30 TraesCS2D01G081900 chr4D 91.667 48 2 2 1489 1535 300858221 300858175 7.280000e-07 65.8
31 TraesCS2D01G081900 chr3B 100.000 28 0 0 3079 3106 771331218 771331191 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G081900 chr2D 35240060 35243204 3144 True 2609.000000 5046 100.000000 1 3145 2 chr2D.!!$R1 3144
1 TraesCS2D01G081900 chr2D 35314197 35316459 2262 False 816.666667 2039 89.859667 17 2388 3 chr2D.!!$F1 2371
2 TraesCS2D01G081900 chr2B 58344007 58345747 1740 False 2117.000000 2117 88.933000 424 2157 1 chr2B.!!$F2 1733
3 TraesCS2D01G081900 chr2B 58088323 58092453 4130 True 1193.900000 2298 88.611500 414 2673 2 chr2B.!!$R3 2259
4 TraesCS2D01G081900 chr2B 58310580 58312582 2002 True 1122.500000 2139 88.207000 1 2208 2 chr2B.!!$R5 2207
5 TraesCS2D01G081900 chr2B 58536368 58538273 1905 False 1003.000000 1821 83.643000 731 2432 2 chr2B.!!$F3 1701
6 TraesCS2D01G081900 chr2B 58235923 58239047 3124 True 534.100000 1563 91.128250 417 2540 4 chr2B.!!$R4 2123
7 TraesCS2D01G081900 chr2A 38569105 38571276 2171 False 890.333333 1792 93.870667 1 2309 3 chr2A.!!$F1 2308
8 TraesCS2D01G081900 chr2A 38515121 38517282 2161 True 778.333333 1786 88.956333 1 2309 3 chr2A.!!$R4 2308
9 TraesCS2D01G081900 chr2A 38394206 38398170 3964 True 258.500000 350 83.095000 1904 2747 2 chr2A.!!$R3 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 689 0.824759 AGGTATGGAACTGACCGCTC 59.175 55.0 0.0 0.0 38.52 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 6002 0.6112 TGCCATACTAACGTGCCACT 59.389 50.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
504 512 7.013369 GTGAATTGAGGTCTAAGAAACCAAGTT 59.987 37.037 0.00 0.00 39.39 2.66
537 545 1.591158 CATGCATTCATTTCAAGCGCC 59.409 47.619 2.29 0.00 0.00 6.53
559 567 4.440525 CCTTCATTGAACCACATATGCACC 60.441 45.833 1.58 0.00 0.00 5.01
576 584 2.666619 GCACCGCAAATCTCTTTGACTG 60.667 50.000 2.41 0.00 43.71 3.51
577 585 2.807967 CACCGCAAATCTCTTTGACTGA 59.192 45.455 2.41 0.00 43.71 3.41
669 689 0.824759 AGGTATGGAACTGACCGCTC 59.175 55.000 0.00 0.00 38.52 5.03
706 729 2.040412 CTGTCAAGTAAGGCCCCTCTTT 59.960 50.000 0.00 0.00 0.00 2.52
854 982 7.016296 TCATGGATATAGAACACTGGACCATA 58.984 38.462 0.00 0.00 34.49 2.74
876 1004 9.228454 CCATATCCAATGGTGTCACTTTCAGTG 62.228 44.444 2.35 2.37 39.60 3.66
893 1021 1.583054 GTGAACCACCACTCACTGAC 58.417 55.000 0.00 0.00 39.11 3.51
900 1028 2.343758 CACTCACTGACCCCCACG 59.656 66.667 0.00 0.00 0.00 4.94
901 1029 2.923035 ACTCACTGACCCCCACGG 60.923 66.667 0.00 0.00 37.81 4.94
924 1071 2.356667 CTTCCCTCCCACTTGGCC 59.643 66.667 0.00 0.00 0.00 5.36
964 1111 4.081254 CAGATGAGATGAGAGTGGGTTGAA 60.081 45.833 0.00 0.00 0.00 2.69
977 1146 3.694566 GTGGGTTGAACACCTTGGATATC 59.305 47.826 0.00 0.00 46.38 1.63
1045 1221 1.376942 GTGGCATCTGCACTGCTCT 60.377 57.895 14.37 0.00 44.36 4.09
1062 1238 1.534595 CTCTTCTTGTGCTGCTTCACC 59.465 52.381 0.00 0.00 36.17 4.02
1083 1259 1.082117 CCCGTAAGCTACCAACTGCG 61.082 60.000 0.00 0.00 0.00 5.18
1086 1262 2.063266 CGTAAGCTACCAACTGCGAAA 58.937 47.619 0.00 0.00 0.00 3.46
1095 1271 1.885887 CCAACTGCGAAATTCCTTCCA 59.114 47.619 0.00 0.00 0.00 3.53
1098 1274 2.369394 ACTGCGAAATTCCTTCCATCC 58.631 47.619 0.00 0.00 0.00 3.51
1099 1275 2.290896 ACTGCGAAATTCCTTCCATCCA 60.291 45.455 0.00 0.00 0.00 3.41
1112 1288 4.889995 CCTTCCATCCATTCCCTCTAAAAC 59.110 45.833 0.00 0.00 0.00 2.43
1166 1342 6.870965 TCTCGAGTAGTAGAACTTTAAGACGT 59.129 38.462 13.13 0.00 0.00 4.34
2148 3409 4.264849 GGTTCGTCAACGCTAAGTAAGATC 59.735 45.833 0.00 0.00 39.60 2.75
2188 3675 1.354337 CCTCGTGGCAAGACGTGATG 61.354 60.000 0.00 0.00 40.34 3.07
2236 3744 4.273480 CGTGGGGCACTAAATAATTCAGAG 59.727 45.833 0.00 0.00 31.34 3.35
2265 3773 1.475034 GGGACCATGTATCATGTGCGT 60.475 52.381 8.57 0.72 0.00 5.24
2310 5893 3.467226 GCTGCCTGCCCGTACCTA 61.467 66.667 0.00 0.00 35.15 3.08
2311 5894 2.499685 CTGCCTGCCCGTACCTAC 59.500 66.667 0.00 0.00 0.00 3.18
2312 5895 3.078836 TGCCTGCCCGTACCTACC 61.079 66.667 0.00 0.00 0.00 3.18
2313 5896 2.762875 GCCTGCCCGTACCTACCT 60.763 66.667 0.00 0.00 0.00 3.08
2324 5907 4.341487 CCGTACCTACCTGATGGATATGA 58.659 47.826 0.00 0.00 37.04 2.15
2327 5910 6.178324 CGTACCTACCTGATGGATATGAGTA 58.822 44.000 0.00 0.00 37.04 2.59
2328 5911 6.829298 CGTACCTACCTGATGGATATGAGTAT 59.171 42.308 0.00 0.00 37.04 2.12
2329 5912 7.991460 CGTACCTACCTGATGGATATGAGTATA 59.009 40.741 0.00 0.00 37.04 1.47
2330 5913 9.344772 GTACCTACCTGATGGATATGAGTATAG 57.655 40.741 0.00 0.00 37.04 1.31
2331 5914 7.945278 ACCTACCTGATGGATATGAGTATAGT 58.055 38.462 0.00 0.00 37.04 2.12
2332 5915 8.402683 ACCTACCTGATGGATATGAGTATAGTT 58.597 37.037 0.00 0.00 37.04 2.24
2392 5998 2.028748 TGCCGACCTACCTAGAAACAAC 60.029 50.000 0.00 0.00 0.00 3.32
2393 5999 2.872370 CCGACCTACCTAGAAACAACG 58.128 52.381 0.00 0.00 0.00 4.10
2395 6001 3.129988 CCGACCTACCTAGAAACAACGAT 59.870 47.826 0.00 0.00 0.00 3.73
2396 6002 4.336433 CCGACCTACCTAGAAACAACGATA 59.664 45.833 0.00 0.00 0.00 2.92
2417 6023 0.899019 TGGCACGTTAGTATGGCAGA 59.101 50.000 0.00 0.00 45.49 4.26
2428 6064 6.037062 CGTTAGTATGGCAGACATTGATGAAA 59.963 38.462 15.46 0.00 41.03 2.69
2435 6071 7.230849 TGGCAGACATTGATGAAATAAACTT 57.769 32.000 0.00 0.00 0.00 2.66
2468 6104 3.119136 GCGTTGCGTGCTATATACTGTAC 59.881 47.826 0.00 0.00 0.00 2.90
2471 6107 5.457799 CGTTGCGTGCTATATACTGTACTTT 59.542 40.000 0.00 0.00 0.00 2.66
2472 6108 6.559703 CGTTGCGTGCTATATACTGTACTTTG 60.560 42.308 0.00 0.00 0.00 2.77
2476 6112 6.474427 GCGTGCTATATACTGTACTTTGTTCA 59.526 38.462 0.00 0.00 0.00 3.18
2526 6211 7.127252 GGGTACACCGTGTCATCTGTAAGAT 62.127 48.000 7.63 0.00 46.75 2.40
2546 7656 2.543777 TCTCGGGGCATTATTAGCAC 57.456 50.000 0.00 0.00 33.73 4.40
2555 9297 2.605818 GCATTATTAGCACACCGACGAA 59.394 45.455 0.00 0.00 0.00 3.85
2556 9298 3.302480 GCATTATTAGCACACCGACGAAG 60.302 47.826 0.00 0.00 0.00 3.79
2566 9308 0.932399 ACCGACGAAGAAAACCAACG 59.068 50.000 0.00 0.00 0.00 4.10
2567 9309 0.932399 CCGACGAAGAAAACCAACGT 59.068 50.000 0.00 0.00 39.82 3.99
2568 9310 2.126467 CCGACGAAGAAAACCAACGTA 58.874 47.619 0.00 0.00 37.32 3.57
2569 9311 2.539274 CCGACGAAGAAAACCAACGTAA 59.461 45.455 0.00 0.00 37.32 3.18
2588 9330 7.367159 ACGTAAACGACAAATGGATTCATAA 57.633 32.000 9.86 0.00 43.02 1.90
2590 9332 7.118680 ACGTAAACGACAAATGGATTCATAAGT 59.881 33.333 9.86 0.00 43.02 2.24
2593 9335 6.106877 ACGACAAATGGATTCATAAGTTCG 57.893 37.500 0.00 5.93 32.44 3.95
2595 9337 6.183360 ACGACAAATGGATTCATAAGTTCGAC 60.183 38.462 11.96 0.00 32.44 4.20
2608 9376 1.202770 AGTTCGACCCCAAGTTTCAGG 60.203 52.381 0.00 0.00 0.00 3.86
2662 9440 1.514678 GGCACGGCATCACTTTGTGA 61.515 55.000 2.77 2.77 46.90 3.58
2692 9470 2.841215 TCCGTGTCCCAAACTTAGTTG 58.159 47.619 0.00 0.00 0.00 3.16
2693 9471 1.877443 CCGTGTCCCAAACTTAGTTGG 59.123 52.381 0.00 2.71 46.57 3.77
2708 9486 7.907214 ACTTAGTTGGATGTCATCACTTTAC 57.093 36.000 14.72 4.93 0.00 2.01
2713 9491 6.772716 AGTTGGATGTCATCACTTTACAGTTT 59.227 34.615 14.72 0.00 0.00 2.66
2724 9502 6.827727 TCACTTTACAGTTTCTAAAGGAGCT 58.172 36.000 0.00 0.00 36.08 4.09
2747 9525 2.093973 AGCGGTCAATTAGGTCACTGAG 60.094 50.000 0.00 0.00 0.00 3.35
2748 9526 2.353803 GCGGTCAATTAGGTCACTGAGT 60.354 50.000 0.00 0.00 0.00 3.41
2749 9527 3.119245 GCGGTCAATTAGGTCACTGAGTA 60.119 47.826 0.00 0.00 0.00 2.59
2750 9528 4.441634 GCGGTCAATTAGGTCACTGAGTAT 60.442 45.833 0.00 0.00 0.00 2.12
2751 9529 5.661458 CGGTCAATTAGGTCACTGAGTATT 58.339 41.667 0.00 0.00 0.00 1.89
2752 9530 5.520288 CGGTCAATTAGGTCACTGAGTATTG 59.480 44.000 0.00 0.00 0.00 1.90
2753 9531 5.817816 GGTCAATTAGGTCACTGAGTATTGG 59.182 44.000 4.30 0.00 0.00 3.16
2754 9532 6.351881 GGTCAATTAGGTCACTGAGTATTGGA 60.352 42.308 4.30 0.00 0.00 3.53
2755 9533 7.103641 GTCAATTAGGTCACTGAGTATTGGAA 58.896 38.462 4.30 0.00 0.00 3.53
2756 9534 7.606456 GTCAATTAGGTCACTGAGTATTGGAAA 59.394 37.037 4.30 0.00 0.00 3.13
2757 9535 7.824289 TCAATTAGGTCACTGAGTATTGGAAAG 59.176 37.037 4.30 0.00 0.00 2.62
2758 9536 3.944087 AGGTCACTGAGTATTGGAAAGC 58.056 45.455 0.00 0.00 0.00 3.51
2759 9537 3.584848 AGGTCACTGAGTATTGGAAAGCT 59.415 43.478 0.00 0.00 0.00 3.74
2760 9538 4.042187 AGGTCACTGAGTATTGGAAAGCTT 59.958 41.667 0.00 0.00 0.00 3.74
2761 9539 4.154918 GGTCACTGAGTATTGGAAAGCTTG 59.845 45.833 0.00 0.00 0.00 4.01
2762 9540 4.997395 GTCACTGAGTATTGGAAAGCTTGA 59.003 41.667 0.00 0.00 0.00 3.02
2763 9541 4.997395 TCACTGAGTATTGGAAAGCTTGAC 59.003 41.667 0.00 0.00 0.00 3.18
2764 9542 4.756642 CACTGAGTATTGGAAAGCTTGACA 59.243 41.667 0.00 0.00 0.00 3.58
2765 9543 5.413833 CACTGAGTATTGGAAAGCTTGACAT 59.586 40.000 0.00 0.00 0.00 3.06
2766 9544 5.645497 ACTGAGTATTGGAAAGCTTGACATC 59.355 40.000 0.00 0.00 0.00 3.06
2767 9545 5.559770 TGAGTATTGGAAAGCTTGACATCA 58.440 37.500 0.00 0.36 0.00 3.07
2768 9546 6.003326 TGAGTATTGGAAAGCTTGACATCAA 58.997 36.000 0.00 1.32 0.00 2.57
2781 9559 2.703416 GACATCAAGAGCATGTCACCA 58.297 47.619 8.75 0.00 46.48 4.17
2782 9560 3.276857 GACATCAAGAGCATGTCACCAT 58.723 45.455 8.75 0.00 46.48 3.55
2783 9561 3.064958 GACATCAAGAGCATGTCACCATG 59.935 47.826 8.75 0.00 46.48 3.66
2784 9562 5.982676 GACATCAAGAGCATGTCACCATGG 61.983 50.000 11.19 11.19 46.48 3.66
2814 9592 4.639824 CATGCTTTGCTTGTGCGT 57.360 50.000 0.00 0.00 43.34 5.24
2815 9593 2.889578 CATGCTTTGCTTGTGCGTT 58.110 47.368 0.00 0.00 43.34 4.84
2816 9594 0.505231 CATGCTTTGCTTGTGCGTTG 59.495 50.000 0.00 0.00 43.34 4.10
2817 9595 0.385029 ATGCTTTGCTTGTGCGTTGA 59.615 45.000 0.00 0.00 43.34 3.18
2818 9596 0.172127 TGCTTTGCTTGTGCGTTGAA 59.828 45.000 0.00 0.00 43.34 2.69
2819 9597 1.276415 GCTTTGCTTGTGCGTTGAAA 58.724 45.000 0.00 0.00 43.34 2.69
2820 9598 1.860326 GCTTTGCTTGTGCGTTGAAAT 59.140 42.857 0.00 0.00 43.34 2.17
2821 9599 2.347846 GCTTTGCTTGTGCGTTGAAATG 60.348 45.455 0.00 0.00 43.34 2.32
2822 9600 1.850377 TTGCTTGTGCGTTGAAATGG 58.150 45.000 0.00 0.00 43.34 3.16
2823 9601 0.597118 TGCTTGTGCGTTGAAATGGC 60.597 50.000 0.00 0.00 43.34 4.40
2824 9602 0.597118 GCTTGTGCGTTGAAATGGCA 60.597 50.000 0.00 0.00 0.00 4.92
2825 9603 1.411394 CTTGTGCGTTGAAATGGCAG 58.589 50.000 0.00 0.00 37.36 4.85
2826 9604 1.001487 CTTGTGCGTTGAAATGGCAGA 60.001 47.619 0.00 0.00 37.36 4.26
2827 9605 0.592637 TGTGCGTTGAAATGGCAGAG 59.407 50.000 0.00 0.00 37.36 3.35
2828 9606 0.593128 GTGCGTTGAAATGGCAGAGT 59.407 50.000 0.00 0.00 37.36 3.24
2829 9607 1.001378 GTGCGTTGAAATGGCAGAGTT 60.001 47.619 0.00 0.00 37.36 3.01
2830 9608 1.001487 TGCGTTGAAATGGCAGAGTTG 60.001 47.619 0.00 0.00 32.07 3.16
2840 9618 3.876300 CAGAGTTGCACGGTAGGC 58.124 61.111 0.00 0.00 0.00 3.93
2841 9619 1.005037 CAGAGTTGCACGGTAGGCA 60.005 57.895 0.00 0.00 40.00 4.75
2842 9620 0.391661 CAGAGTTGCACGGTAGGCAT 60.392 55.000 0.00 0.00 41.58 4.40
2843 9621 0.324943 AGAGTTGCACGGTAGGCATT 59.675 50.000 0.00 0.00 41.58 3.56
2844 9622 0.727398 GAGTTGCACGGTAGGCATTC 59.273 55.000 0.00 0.00 41.58 2.67
2845 9623 0.036164 AGTTGCACGGTAGGCATTCA 59.964 50.000 0.00 0.00 41.58 2.57
2846 9624 0.878416 GTTGCACGGTAGGCATTCAA 59.122 50.000 0.00 0.00 41.58 2.69
2847 9625 1.268352 GTTGCACGGTAGGCATTCAAA 59.732 47.619 0.00 0.00 41.58 2.69
2848 9626 1.164411 TGCACGGTAGGCATTCAAAG 58.836 50.000 0.00 0.00 36.11 2.77
2849 9627 0.451783 GCACGGTAGGCATTCAAAGG 59.548 55.000 0.00 0.00 0.00 3.11
2850 9628 1.094785 CACGGTAGGCATTCAAAGGG 58.905 55.000 0.00 0.00 0.00 3.95
2851 9629 0.034477 ACGGTAGGCATTCAAAGGGG 60.034 55.000 0.00 0.00 0.00 4.79
2852 9630 0.254747 CGGTAGGCATTCAAAGGGGA 59.745 55.000 0.00 0.00 0.00 4.81
2853 9631 1.340600 CGGTAGGCATTCAAAGGGGAA 60.341 52.381 0.00 0.00 0.00 3.97
2854 9632 2.686715 CGGTAGGCATTCAAAGGGGAAT 60.687 50.000 0.00 0.00 37.99 3.01
2855 9633 3.374764 GGTAGGCATTCAAAGGGGAATT 58.625 45.455 0.00 0.00 35.37 2.17
2856 9634 3.774766 GGTAGGCATTCAAAGGGGAATTT 59.225 43.478 0.00 0.00 35.37 1.82
2857 9635 3.986996 AGGCATTCAAAGGGGAATTTG 57.013 42.857 0.00 0.00 40.75 2.32
2858 9636 2.026915 AGGCATTCAAAGGGGAATTTGC 60.027 45.455 0.00 0.00 39.51 3.68
2859 9637 2.290197 GGCATTCAAAGGGGAATTTGCA 60.290 45.455 0.00 0.00 39.51 4.08
2860 9638 3.004862 GCATTCAAAGGGGAATTTGCAG 58.995 45.455 0.00 0.00 39.51 4.41
2861 9639 3.602483 CATTCAAAGGGGAATTTGCAGG 58.398 45.455 0.00 0.00 39.51 4.85
2862 9640 2.397044 TCAAAGGGGAATTTGCAGGT 57.603 45.000 0.00 0.00 39.51 4.00
2863 9641 2.247358 TCAAAGGGGAATTTGCAGGTC 58.753 47.619 0.00 0.00 39.51 3.85
2864 9642 2.158325 TCAAAGGGGAATTTGCAGGTCT 60.158 45.455 0.00 0.00 39.51 3.85
2865 9643 1.928868 AAGGGGAATTTGCAGGTCTG 58.071 50.000 0.00 0.00 0.00 3.51
2866 9644 1.075601 AGGGGAATTTGCAGGTCTGA 58.924 50.000 1.65 0.00 0.00 3.27
2867 9645 1.177401 GGGGAATTTGCAGGTCTGAC 58.823 55.000 0.00 0.00 0.00 3.51
2868 9646 1.272147 GGGGAATTTGCAGGTCTGACT 60.272 52.381 7.85 0.00 0.00 3.41
2869 9647 2.087646 GGGAATTTGCAGGTCTGACTC 58.912 52.381 7.85 0.00 0.00 3.36
2870 9648 2.290577 GGGAATTTGCAGGTCTGACTCT 60.291 50.000 7.85 0.47 0.00 3.24
2871 9649 3.006247 GGAATTTGCAGGTCTGACTCTC 58.994 50.000 7.85 0.00 0.00 3.20
2872 9650 3.557898 GGAATTTGCAGGTCTGACTCTCA 60.558 47.826 7.85 0.54 0.00 3.27
2873 9651 2.827800 TTTGCAGGTCTGACTCTCAG 57.172 50.000 7.85 0.00 45.59 3.35
2884 9662 2.608623 TGACTCTCAGAACACCATGGA 58.391 47.619 21.47 0.00 0.00 3.41
2885 9663 2.300152 TGACTCTCAGAACACCATGGAC 59.700 50.000 21.47 6.81 0.00 4.02
2886 9664 2.300152 GACTCTCAGAACACCATGGACA 59.700 50.000 21.47 0.00 0.00 4.02
2887 9665 2.301296 ACTCTCAGAACACCATGGACAG 59.699 50.000 21.47 10.40 0.00 3.51
2888 9666 1.002430 TCTCAGAACACCATGGACAGC 59.998 52.381 21.47 5.00 0.00 4.40
2889 9667 1.002888 CTCAGAACACCATGGACAGCT 59.997 52.381 21.47 7.44 0.00 4.24
2890 9668 1.162698 CAGAACACCATGGACAGCTG 58.837 55.000 21.47 13.48 0.00 4.24
2891 9669 0.037303 AGAACACCATGGACAGCTGG 59.963 55.000 21.47 1.64 38.55 4.85
2892 9670 0.250901 GAACACCATGGACAGCTGGT 60.251 55.000 21.47 3.62 46.68 4.00
2893 9671 0.250901 AACACCATGGACAGCTGGTC 60.251 55.000 21.47 12.72 43.91 4.02
2902 9680 1.641577 GACAGCTGGTCAACGTATCC 58.358 55.000 19.93 0.00 46.19 2.59
2903 9681 0.973632 ACAGCTGGTCAACGTATCCA 59.026 50.000 19.93 0.00 0.00 3.41
2904 9682 1.337823 ACAGCTGGTCAACGTATCCAC 60.338 52.381 19.93 0.00 0.00 4.02
2905 9683 0.249398 AGCTGGTCAACGTATCCACC 59.751 55.000 0.00 0.00 0.00 4.61
2906 9684 0.036765 GCTGGTCAACGTATCCACCA 60.037 55.000 7.40 7.40 37.37 4.17
2908 9686 0.036765 TGGTCAACGTATCCACCAGC 60.037 55.000 4.22 0.00 33.83 4.85
2909 9687 0.036765 GGTCAACGTATCCACCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
2910 9688 1.359848 GTCAACGTATCCACCAGCAG 58.640 55.000 0.00 0.00 0.00 4.24
2911 9689 0.391130 TCAACGTATCCACCAGCAGC 60.391 55.000 0.00 0.00 0.00 5.25
2912 9690 1.447838 AACGTATCCACCAGCAGCG 60.448 57.895 0.00 0.00 0.00 5.18
2913 9691 3.264897 CGTATCCACCAGCAGCGC 61.265 66.667 0.00 0.00 0.00 5.92
2914 9692 2.187946 GTATCCACCAGCAGCGCT 59.812 61.111 2.64 2.64 40.77 5.92
2915 9693 1.884926 GTATCCACCAGCAGCGCTC 60.885 63.158 7.13 2.24 36.40 5.03
2916 9694 3.094062 TATCCACCAGCAGCGCTCC 62.094 63.158 7.13 0.00 36.40 4.70
2929 9707 4.767255 GCTCCCTGCCTCGTGGTG 62.767 72.222 5.26 0.00 35.15 4.17
2930 9708 2.997315 CTCCCTGCCTCGTGGTGA 60.997 66.667 5.26 0.00 35.27 4.02
2931 9709 2.525629 TCCCTGCCTCGTGGTGAA 60.526 61.111 5.26 0.00 35.27 3.18
2932 9710 2.111999 CTCCCTGCCTCGTGGTGAAA 62.112 60.000 5.26 0.00 35.27 2.69
2933 9711 1.228124 CCCTGCCTCGTGGTGAAAA 60.228 57.895 5.26 0.00 35.27 2.29
2934 9712 0.609131 CCCTGCCTCGTGGTGAAAAT 60.609 55.000 5.26 0.00 35.27 1.82
2935 9713 0.804989 CCTGCCTCGTGGTGAAAATC 59.195 55.000 5.26 0.00 35.27 2.17
2936 9714 0.443869 CTGCCTCGTGGTGAAAATCG 59.556 55.000 5.26 0.00 35.27 3.34
2937 9715 0.034198 TGCCTCGTGGTGAAAATCGA 59.966 50.000 5.26 0.00 35.27 3.59
2938 9716 0.721718 GCCTCGTGGTGAAAATCGAG 59.278 55.000 5.26 6.47 45.89 4.04
2942 9720 1.999735 TCGTGGTGAAAATCGAGATGC 59.000 47.619 0.00 0.00 0.00 3.91
2943 9721 1.062587 CGTGGTGAAAATCGAGATGCC 59.937 52.381 0.00 0.00 0.00 4.40
2944 9722 1.401905 GTGGTGAAAATCGAGATGCCC 59.598 52.381 0.00 0.00 0.00 5.36
2945 9723 1.004161 TGGTGAAAATCGAGATGCCCA 59.996 47.619 0.00 0.00 0.00 5.36
2946 9724 1.672881 GGTGAAAATCGAGATGCCCAG 59.327 52.381 0.00 0.00 0.00 4.45
2947 9725 2.632377 GTGAAAATCGAGATGCCCAGA 58.368 47.619 0.00 0.00 0.00 3.86
2948 9726 3.009723 GTGAAAATCGAGATGCCCAGAA 58.990 45.455 0.00 0.00 0.00 3.02
2949 9727 3.629398 GTGAAAATCGAGATGCCCAGAAT 59.371 43.478 0.00 0.00 0.00 2.40
2950 9728 3.628942 TGAAAATCGAGATGCCCAGAATG 59.371 43.478 0.00 0.00 0.00 2.67
2965 9743 4.889832 CAGAATGGATTAGTGTTCAGGC 57.110 45.455 0.00 0.00 0.00 4.85
2966 9744 4.264253 CAGAATGGATTAGTGTTCAGGCA 58.736 43.478 0.00 0.00 0.00 4.75
2967 9745 4.701651 CAGAATGGATTAGTGTTCAGGCAA 59.298 41.667 0.00 0.00 0.00 4.52
2968 9746 4.702131 AGAATGGATTAGTGTTCAGGCAAC 59.298 41.667 0.00 0.00 35.28 4.17
2969 9747 3.500448 TGGATTAGTGTTCAGGCAACA 57.500 42.857 0.00 0.00 43.12 3.33
2982 9760 3.594568 CAACACATGCTGGCCGAT 58.405 55.556 0.00 0.00 0.00 4.18
2983 9761 1.885157 CAACACATGCTGGCCGATT 59.115 52.632 0.00 0.00 0.00 3.34
2984 9762 0.244450 CAACACATGCTGGCCGATTT 59.756 50.000 0.00 0.00 0.00 2.17
2985 9763 0.968405 AACACATGCTGGCCGATTTT 59.032 45.000 0.00 0.00 0.00 1.82
2986 9764 0.527565 ACACATGCTGGCCGATTTTC 59.472 50.000 0.00 0.00 0.00 2.29
2987 9765 0.523968 CACATGCTGGCCGATTTTCG 60.524 55.000 0.00 0.00 40.07 3.46
2988 9766 0.960364 ACATGCTGGCCGATTTTCGT 60.960 50.000 0.00 0.00 38.40 3.85
2989 9767 0.523968 CATGCTGGCCGATTTTCGTG 60.524 55.000 0.00 0.00 38.40 4.35
2990 9768 0.676466 ATGCTGGCCGATTTTCGTGA 60.676 50.000 0.00 0.00 38.40 4.35
2991 9769 0.676466 TGCTGGCCGATTTTCGTGAT 60.676 50.000 0.00 0.00 38.40 3.06
2992 9770 0.451783 GCTGGCCGATTTTCGTGATT 59.548 50.000 0.00 0.00 38.40 2.57
2993 9771 1.135402 GCTGGCCGATTTTCGTGATTT 60.135 47.619 0.00 0.00 38.40 2.17
2994 9772 2.518949 CTGGCCGATTTTCGTGATTTG 58.481 47.619 0.00 0.00 38.40 2.32
2995 9773 2.155279 TGGCCGATTTTCGTGATTTGA 58.845 42.857 0.00 0.00 38.40 2.69
2996 9774 2.095466 TGGCCGATTTTCGTGATTTGAC 60.095 45.455 0.00 0.00 38.40 3.18
2997 9775 2.515912 GCCGATTTTCGTGATTTGACC 58.484 47.619 0.00 0.00 38.40 4.02
2998 9776 2.731027 GCCGATTTTCGTGATTTGACCC 60.731 50.000 0.00 0.00 38.40 4.46
2999 9777 2.747446 CCGATTTTCGTGATTTGACCCT 59.253 45.455 0.00 0.00 38.40 4.34
3000 9778 3.190535 CCGATTTTCGTGATTTGACCCTT 59.809 43.478 0.00 0.00 38.40 3.95
3001 9779 4.320935 CCGATTTTCGTGATTTGACCCTTT 60.321 41.667 0.00 0.00 38.40 3.11
3002 9780 5.219633 CGATTTTCGTGATTTGACCCTTTT 58.780 37.500 0.00 0.00 34.72 2.27
3003 9781 6.375377 CGATTTTCGTGATTTGACCCTTTTA 58.625 36.000 0.00 0.00 34.72 1.52
3004 9782 6.523201 CGATTTTCGTGATTTGACCCTTTTAG 59.477 38.462 0.00 0.00 34.72 1.85
3005 9783 4.759516 TTCGTGATTTGACCCTTTTAGC 57.240 40.909 0.00 0.00 0.00 3.09
3006 9784 3.745799 TCGTGATTTGACCCTTTTAGCA 58.254 40.909 0.00 0.00 0.00 3.49
3007 9785 3.500680 TCGTGATTTGACCCTTTTAGCAC 59.499 43.478 0.00 0.00 0.00 4.40
3008 9786 3.252215 CGTGATTTGACCCTTTTAGCACA 59.748 43.478 0.00 0.00 0.00 4.57
3009 9787 4.613622 CGTGATTTGACCCTTTTAGCACAG 60.614 45.833 0.00 0.00 0.00 3.66
3010 9788 4.278419 GTGATTTGACCCTTTTAGCACAGT 59.722 41.667 0.00 0.00 0.00 3.55
3011 9789 4.892934 TGATTTGACCCTTTTAGCACAGTT 59.107 37.500 0.00 0.00 0.00 3.16
3012 9790 5.362430 TGATTTGACCCTTTTAGCACAGTTT 59.638 36.000 0.00 0.00 0.00 2.66
3013 9791 6.547880 TGATTTGACCCTTTTAGCACAGTTTA 59.452 34.615 0.00 0.00 0.00 2.01
3014 9792 6.777213 TTTGACCCTTTTAGCACAGTTTAA 57.223 33.333 0.00 0.00 0.00 1.52
3015 9793 5.761165 TGACCCTTTTAGCACAGTTTAAC 57.239 39.130 0.00 0.00 0.00 2.01
3016 9794 4.273969 TGACCCTTTTAGCACAGTTTAACG 59.726 41.667 0.00 0.00 0.00 3.18
3017 9795 4.453751 ACCCTTTTAGCACAGTTTAACGA 58.546 39.130 0.00 0.00 0.00 3.85
3018 9796 4.514066 ACCCTTTTAGCACAGTTTAACGAG 59.486 41.667 0.00 0.00 0.00 4.18
3019 9797 4.753107 CCCTTTTAGCACAGTTTAACGAGA 59.247 41.667 0.00 0.00 0.00 4.04
3020 9798 5.411669 CCCTTTTAGCACAGTTTAACGAGAT 59.588 40.000 0.00 0.00 0.00 2.75
3021 9799 6.402226 CCCTTTTAGCACAGTTTAACGAGATC 60.402 42.308 0.00 0.00 0.00 2.75
3022 9800 6.402226 CCTTTTAGCACAGTTTAACGAGATCC 60.402 42.308 0.00 0.00 0.00 3.36
3023 9801 2.607187 AGCACAGTTTAACGAGATCCG 58.393 47.619 0.00 2.55 45.44 4.18
3024 9802 2.230508 AGCACAGTTTAACGAGATCCGA 59.769 45.455 10.05 0.00 41.76 4.55
3025 9803 2.344741 GCACAGTTTAACGAGATCCGAC 59.655 50.000 10.05 0.00 41.76 4.79
3026 9804 2.921754 CACAGTTTAACGAGATCCGACC 59.078 50.000 10.05 0.00 41.76 4.79
3027 9805 2.094338 ACAGTTTAACGAGATCCGACCC 60.094 50.000 10.05 0.00 41.76 4.46
3028 9806 1.479730 AGTTTAACGAGATCCGACCCC 59.520 52.381 10.05 0.00 41.76 4.95
3029 9807 0.457035 TTTAACGAGATCCGACCCCG 59.543 55.000 10.05 0.00 41.76 5.73
3030 9808 0.680921 TTAACGAGATCCGACCCCGT 60.681 55.000 10.05 0.00 41.76 5.28
3031 9809 0.680921 TAACGAGATCCGACCCCGTT 60.681 55.000 10.05 0.00 44.22 4.44
3032 9810 1.538687 AACGAGATCCGACCCCGTTT 61.539 55.000 10.05 0.00 39.98 3.60
3033 9811 1.226888 CGAGATCCGACCCCGTTTC 60.227 63.158 0.00 0.00 41.76 2.78
3034 9812 1.895238 GAGATCCGACCCCGTTTCA 59.105 57.895 0.00 0.00 0.00 2.69
3035 9813 0.248289 GAGATCCGACCCCGTTTCAA 59.752 55.000 0.00 0.00 0.00 2.69
3036 9814 0.688487 AGATCCGACCCCGTTTCAAA 59.312 50.000 0.00 0.00 0.00 2.69
3037 9815 1.280998 AGATCCGACCCCGTTTCAAAT 59.719 47.619 0.00 0.00 0.00 2.32
3038 9816 2.502538 AGATCCGACCCCGTTTCAAATA 59.497 45.455 0.00 0.00 0.00 1.40
3039 9817 3.135895 AGATCCGACCCCGTTTCAAATAT 59.864 43.478 0.00 0.00 0.00 1.28
3040 9818 3.353370 TCCGACCCCGTTTCAAATATT 57.647 42.857 0.00 0.00 0.00 1.28
3041 9819 3.688235 TCCGACCCCGTTTCAAATATTT 58.312 40.909 0.00 0.00 0.00 1.40
3042 9820 4.080687 TCCGACCCCGTTTCAAATATTTT 58.919 39.130 0.00 0.00 0.00 1.82
3043 9821 4.523558 TCCGACCCCGTTTCAAATATTTTT 59.476 37.500 0.00 0.00 0.00 1.94
3044 9822 4.623595 CCGACCCCGTTTCAAATATTTTTG 59.376 41.667 0.00 2.51 42.98 2.44
3064 9842 9.772973 ATTTTTGACATTTAACCCTTTTCCTAC 57.227 29.630 0.00 0.00 0.00 3.18
3065 9843 6.904463 TTGACATTTAACCCTTTTCCTACC 57.096 37.500 0.00 0.00 0.00 3.18
3066 9844 5.005094 TGACATTTAACCCTTTTCCTACCG 58.995 41.667 0.00 0.00 0.00 4.02
3067 9845 4.989277 ACATTTAACCCTTTTCCTACCGT 58.011 39.130 0.00 0.00 0.00 4.83
3068 9846 5.005740 ACATTTAACCCTTTTCCTACCGTC 58.994 41.667 0.00 0.00 0.00 4.79
3069 9847 4.980339 TTTAACCCTTTTCCTACCGTCT 57.020 40.909 0.00 0.00 0.00 4.18
3070 9848 4.980339 TTAACCCTTTTCCTACCGTCTT 57.020 40.909 0.00 0.00 0.00 3.01
3071 9849 2.853235 ACCCTTTTCCTACCGTCTTG 57.147 50.000 0.00 0.00 0.00 3.02
3072 9850 1.350019 ACCCTTTTCCTACCGTCTTGG 59.650 52.381 0.00 0.00 46.41 3.61
3073 9851 1.339727 CCCTTTTCCTACCGTCTTGGG 60.340 57.143 0.00 0.00 44.64 4.12
3074 9852 1.350019 CCTTTTCCTACCGTCTTGGGT 59.650 52.381 0.00 0.00 44.64 4.51
3075 9853 2.614734 CCTTTTCCTACCGTCTTGGGTC 60.615 54.545 0.00 0.00 44.64 4.46
3076 9854 0.978907 TTTCCTACCGTCTTGGGTCC 59.021 55.000 0.00 0.00 44.64 4.46
3077 9855 0.906282 TTCCTACCGTCTTGGGTCCC 60.906 60.000 0.00 0.00 44.64 4.46
3078 9856 2.718073 CCTACCGTCTTGGGTCCCG 61.718 68.421 2.65 0.00 44.64 5.14
3079 9857 2.681064 TACCGTCTTGGGTCCCGG 60.681 66.667 2.65 2.45 44.64 5.73
3083 9861 3.782443 GTCTTGGGTCCCGGCGAT 61.782 66.667 9.30 0.00 0.00 4.58
3084 9862 2.042741 TCTTGGGTCCCGGCGATA 60.043 61.111 9.30 0.00 0.00 2.92
3085 9863 2.131709 TCTTGGGTCCCGGCGATAG 61.132 63.158 9.30 0.00 0.00 2.08
3086 9864 3.158648 TTGGGTCCCGGCGATAGG 61.159 66.667 9.30 0.09 0.00 2.57
3092 9870 4.169696 CCCGGCGATAGGGTTGCA 62.170 66.667 9.30 0.00 43.89 4.08
3093 9871 2.111043 CCGGCGATAGGGTTGCAT 59.889 61.111 9.30 0.00 39.13 3.96
3094 9872 1.369692 CCGGCGATAGGGTTGCATA 59.630 57.895 9.30 0.00 39.13 3.14
3095 9873 0.670546 CCGGCGATAGGGTTGCATAG 60.671 60.000 9.30 0.00 39.13 2.23
3096 9874 0.670546 CGGCGATAGGGTTGCATAGG 60.671 60.000 0.00 0.00 39.13 2.57
3097 9875 0.955919 GGCGATAGGGTTGCATAGGC 60.956 60.000 0.00 0.00 39.13 3.93
3098 9876 0.035458 GCGATAGGGTTGCATAGGCT 59.965 55.000 0.00 0.00 41.91 4.58
3099 9877 1.275291 GCGATAGGGTTGCATAGGCTA 59.725 52.381 0.00 0.00 41.91 3.93
3100 9878 2.931320 GCGATAGGGTTGCATAGGCTAC 60.931 54.545 5.37 5.37 43.69 3.58
3113 9891 3.497879 GCTACCGCCATGACCAAC 58.502 61.111 0.00 0.00 0.00 3.77
3114 9892 2.461110 GCTACCGCCATGACCAACG 61.461 63.158 0.00 0.00 0.00 4.10
3120 9898 2.266372 CCATGACCAACGGCGGTA 59.734 61.111 13.24 0.00 40.22 4.02
3121 9899 1.813753 CCATGACCAACGGCGGTAG 60.814 63.158 13.24 0.00 40.22 3.18
3122 9900 1.813753 CATGACCAACGGCGGTAGG 60.814 63.158 13.24 11.95 40.22 3.18
3123 9901 3.026431 ATGACCAACGGCGGTAGGG 62.026 63.158 13.24 5.65 40.22 3.53
3124 9902 3.698820 GACCAACGGCGGTAGGGT 61.699 66.667 13.24 17.17 40.22 4.34
3125 9903 2.283821 ACCAACGGCGGTAGGGTA 60.284 61.111 13.24 0.00 37.57 3.69
3126 9904 1.887344 GACCAACGGCGGTAGGGTAA 61.887 60.000 13.24 0.00 40.22 2.85
3127 9905 1.448365 CCAACGGCGGTAGGGTAAC 60.448 63.158 13.24 0.00 0.00 2.50
3128 9906 1.806758 CAACGGCGGTAGGGTAACG 60.807 63.158 13.24 0.00 42.93 3.18
3129 9907 3.005540 AACGGCGGTAGGGTAACGG 62.006 63.158 13.24 0.00 39.77 4.44
3132 9910 2.202837 GCGGTAGGGTAACGGCAG 60.203 66.667 2.18 0.00 43.13 4.85
3133 9911 2.497770 CGGTAGGGTAACGGCAGG 59.502 66.667 0.00 0.00 34.68 4.85
3134 9912 2.188731 GGTAGGGTAACGGCAGGC 59.811 66.667 0.00 0.00 37.60 4.85
3135 9913 2.202837 GTAGGGTAACGGCAGGCG 60.203 66.667 16.06 16.06 37.60 5.52
3136 9914 4.151582 TAGGGTAACGGCAGGCGC 62.152 66.667 17.72 0.00 37.60 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
504 512 4.779696 TGAATGCATGCATCAGTTACCTA 58.220 39.130 32.25 9.13 35.31 3.08
537 545 4.675510 GGTGCATATGTGGTTCAATGAAG 58.324 43.478 4.29 0.00 0.00 3.02
559 567 4.997905 TTCTCAGTCAAAGAGATTTGCG 57.002 40.909 0.00 0.00 41.42 4.85
576 584 3.009143 ACCACCACCTTACTCCATTTCTC 59.991 47.826 0.00 0.00 0.00 2.87
577 585 2.986728 ACCACCACCTTACTCCATTTCT 59.013 45.455 0.00 0.00 0.00 2.52
635 652 0.976073 TACCTTCCCAGCTTCCGGAG 60.976 60.000 3.34 0.00 0.00 4.63
669 689 5.065731 ACTTGACAGTTGCTGAAAGAAGAAG 59.934 40.000 16.72 0.00 34.95 2.85
876 1004 0.250338 GGGTCAGTGAGTGGTGGTTC 60.250 60.000 0.00 0.00 0.00 3.62
883 1011 2.343758 CGTGGGGGTCAGTGAGTG 59.656 66.667 0.00 0.00 0.00 3.51
884 1012 2.923035 CCGTGGGGGTCAGTGAGT 60.923 66.667 0.00 0.00 0.00 3.41
885 1013 4.394712 GCCGTGGGGGTCAGTGAG 62.395 72.222 0.00 0.00 38.44 3.51
901 1029 4.048470 GTGGGAGGGAAGTGGGGC 62.048 72.222 0.00 0.00 0.00 5.80
924 1071 5.087323 TCATCTGGTTCTTATAGCCTAGGG 58.913 45.833 11.72 0.00 0.00 3.53
941 1088 3.450096 TCAACCCACTCTCATCTCATCTG 59.550 47.826 0.00 0.00 0.00 2.90
964 1111 3.780294 TGCCTTACAGATATCCAAGGTGT 59.220 43.478 20.96 12.54 39.82 4.16
1045 1221 1.785041 GCGGTGAAGCAGCACAAGAA 61.785 55.000 10.52 0.00 40.52 2.52
1062 1238 1.082117 CAGTTGGTAGCTTACGGGCG 61.082 60.000 0.00 0.00 37.29 6.13
1083 1259 4.550669 AGGGAATGGATGGAAGGAATTTC 58.449 43.478 0.00 0.00 34.93 2.17
1086 1262 3.411115 AGAGGGAATGGATGGAAGGAAT 58.589 45.455 0.00 0.00 0.00 3.01
1095 1271 3.644966 TGCGTTTTAGAGGGAATGGAT 57.355 42.857 0.00 0.00 0.00 3.41
1098 1274 3.194861 TCGATGCGTTTTAGAGGGAATG 58.805 45.455 0.00 0.00 0.00 2.67
1099 1275 3.536956 TCGATGCGTTTTAGAGGGAAT 57.463 42.857 0.00 0.00 0.00 3.01
1112 1288 4.925068 TGTAGATATCCATGATCGATGCG 58.075 43.478 0.54 0.00 0.00 4.73
1166 1342 3.368635 CCATGGCAGCAGATTAAGCAAAA 60.369 43.478 0.00 0.00 0.00 2.44
1621 2881 3.755628 GCTCCACCTCGCCGTACA 61.756 66.667 0.00 0.00 0.00 2.90
2148 3409 0.743688 AGCCACTGATCACTAGCTCG 59.256 55.000 0.00 0.00 0.00 5.03
2188 3675 1.531149 GAGCACATACACACACACACC 59.469 52.381 0.00 0.00 0.00 4.16
2236 3744 3.136443 TGATACATGGTCCCTTCATCACC 59.864 47.826 0.00 0.00 0.00 4.02
2265 3773 4.009002 TGCTCATACAGTAAGCATGCAAA 58.991 39.130 21.98 3.86 40.91 3.68
2310 5893 9.159254 TGAAAACTATACTCATATCCATCAGGT 57.841 33.333 0.00 0.00 35.89 4.00
2313 5896 9.476202 CGTTGAAAACTATACTCATATCCATCA 57.524 33.333 0.00 0.00 46.99 3.07
2324 5907 6.423001 GTGTTCCAGACGTTGAAAACTATACT 59.577 38.462 8.61 0.00 46.99 2.12
2327 5910 5.236478 CAGTGTTCCAGACGTTGAAAACTAT 59.764 40.000 14.92 0.00 46.99 2.12
2328 5911 4.569162 CAGTGTTCCAGACGTTGAAAACTA 59.431 41.667 14.92 0.00 46.99 2.24
2329 5912 3.374058 CAGTGTTCCAGACGTTGAAAACT 59.626 43.478 11.37 11.37 46.99 2.66
2330 5913 3.372822 TCAGTGTTCCAGACGTTGAAAAC 59.627 43.478 8.06 8.06 45.31 2.43
2331 5914 3.601435 TCAGTGTTCCAGACGTTGAAAA 58.399 40.909 0.00 0.00 0.00 2.29
2332 5915 3.254470 TCAGTGTTCCAGACGTTGAAA 57.746 42.857 0.00 0.00 0.00 2.69
2392 5998 3.305964 CCATACTAACGTGCCACTATCG 58.694 50.000 0.00 0.00 0.00 2.92
2393 5999 3.057734 GCCATACTAACGTGCCACTATC 58.942 50.000 0.00 0.00 0.00 2.08
2395 6001 1.826096 TGCCATACTAACGTGCCACTA 59.174 47.619 0.00 0.00 0.00 2.74
2396 6002 0.611200 TGCCATACTAACGTGCCACT 59.389 50.000 0.00 0.00 0.00 4.00
2399 6005 1.287425 GTCTGCCATACTAACGTGCC 58.713 55.000 0.00 0.00 0.00 5.01
2405 6011 9.625747 TTATTTCATCAATGTCTGCCATACTAA 57.374 29.630 0.00 0.00 31.97 2.24
2417 6023 9.683069 GAACAGACAAGTTTATTTCATCAATGT 57.317 29.630 0.00 0.00 0.00 2.71
2476 6112 7.915293 TGTGAAATATTGAACCGTTCTACAT 57.085 32.000 12.43 0.00 0.00 2.29
2485 6152 6.405397 GGTGTACCCATGTGAAATATTGAACC 60.405 42.308 0.00 0.00 0.00 3.62
2494 6161 1.141254 ACACGGTGTACCCATGTGAAA 59.859 47.619 12.96 0.00 35.20 2.69
2526 6211 2.171659 TGTGCTAATAATGCCCCGAGAA 59.828 45.455 0.00 0.00 0.00 2.87
2546 7656 1.332552 CGTTGGTTTTCTTCGTCGGTG 60.333 52.381 0.00 0.00 0.00 4.94
2555 9297 4.943142 TTGTCGTTTACGTTGGTTTTCT 57.057 36.364 0.00 0.00 40.80 2.52
2556 9298 5.052238 CCATTTGTCGTTTACGTTGGTTTTC 60.052 40.000 0.00 0.00 40.80 2.29
2566 9308 9.274065 GAACTTATGAATCCATTTGTCGTTTAC 57.726 33.333 0.00 0.00 34.31 2.01
2567 9309 8.172484 CGAACTTATGAATCCATTTGTCGTTTA 58.828 33.333 0.00 0.00 34.31 2.01
2568 9310 7.021196 CGAACTTATGAATCCATTTGTCGTTT 58.979 34.615 0.00 0.00 34.31 3.60
2569 9311 6.370442 TCGAACTTATGAATCCATTTGTCGTT 59.630 34.615 0.00 0.00 34.31 3.85
2588 9330 1.202770 CCTGAAACTTGGGGTCGAACT 60.203 52.381 0.00 0.00 0.00 3.01
2590 9332 1.133363 TCCTGAAACTTGGGGTCGAA 58.867 50.000 0.00 0.00 0.00 3.71
2593 9335 3.767711 AGATTTCCTGAAACTTGGGGTC 58.232 45.455 0.00 0.00 32.51 4.46
2595 9337 4.151883 TGAAGATTTCCTGAAACTTGGGG 58.848 43.478 10.22 0.00 32.51 4.96
2608 9376 5.692204 TCACTCTGACGAAACTGAAGATTTC 59.308 40.000 0.00 0.00 33.52 2.17
2662 9440 1.115467 GGGACACGGATCAGATCAGT 58.885 55.000 12.66 11.39 38.23 3.41
2692 9470 8.547967 TTAGAAACTGTAAAGTGATGACATCC 57.452 34.615 12.90 4.61 0.00 3.51
2698 9476 7.389053 AGCTCCTTTAGAAACTGTAAAGTGATG 59.611 37.037 0.00 0.00 36.24 3.07
2708 9486 2.670414 CGCTCAGCTCCTTTAGAAACTG 59.330 50.000 0.00 0.00 32.42 3.16
2713 9491 0.818296 GACCGCTCAGCTCCTTTAGA 59.182 55.000 0.00 0.00 0.00 2.10
2719 9497 1.576356 CTAATTGACCGCTCAGCTCC 58.424 55.000 0.00 0.00 0.00 4.70
2724 9502 1.899814 AGTGACCTAATTGACCGCTCA 59.100 47.619 0.00 0.00 0.00 4.26
2761 9539 2.703416 TGGTGACATGCTCTTGATGTC 58.297 47.619 7.07 7.07 46.72 3.06
2762 9540 2.865119 TGGTGACATGCTCTTGATGT 57.135 45.000 0.00 0.00 36.73 3.06
2775 9553 1.550524 TGCTACTGTCTCCATGGTGAC 59.449 52.381 31.24 31.24 38.61 3.67
2776 9554 1.827344 CTGCTACTGTCTCCATGGTGA 59.173 52.381 12.58 12.54 0.00 4.02
2777 9555 1.741732 GCTGCTACTGTCTCCATGGTG 60.742 57.143 12.58 9.91 0.00 4.17
2778 9556 0.539051 GCTGCTACTGTCTCCATGGT 59.461 55.000 12.58 0.00 0.00 3.55
2779 9557 0.538584 TGCTGCTACTGTCTCCATGG 59.461 55.000 4.97 4.97 0.00 3.66
2780 9558 2.210961 CATGCTGCTACTGTCTCCATG 58.789 52.381 0.00 0.00 0.00 3.66
2781 9559 1.474677 GCATGCTGCTACTGTCTCCAT 60.475 52.381 11.37 0.00 40.96 3.41
2782 9560 0.107993 GCATGCTGCTACTGTCTCCA 60.108 55.000 11.37 0.00 40.96 3.86
2783 9561 2.687842 GCATGCTGCTACTGTCTCC 58.312 57.895 11.37 0.00 40.96 3.71
2797 9575 0.505231 CAACGCACAAGCAAAGCATG 59.495 50.000 0.00 0.00 42.27 4.06
2798 9576 0.385029 TCAACGCACAAGCAAAGCAT 59.615 45.000 0.00 0.00 42.27 3.79
2799 9577 0.172127 TTCAACGCACAAGCAAAGCA 59.828 45.000 0.00 0.00 42.27 3.91
2800 9578 1.276415 TTTCAACGCACAAGCAAAGC 58.724 45.000 0.00 0.00 42.27 3.51
2801 9579 2.219216 CCATTTCAACGCACAAGCAAAG 59.781 45.455 0.00 0.00 42.27 2.77
2802 9580 2.200067 CCATTTCAACGCACAAGCAAA 58.800 42.857 0.00 0.00 42.27 3.68
2803 9581 1.850377 CCATTTCAACGCACAAGCAA 58.150 45.000 0.00 0.00 42.27 3.91
2804 9582 0.597118 GCCATTTCAACGCACAAGCA 60.597 50.000 0.00 0.00 42.27 3.91
2805 9583 0.597118 TGCCATTTCAACGCACAAGC 60.597 50.000 0.00 0.00 37.42 4.01
2806 9584 1.001487 TCTGCCATTTCAACGCACAAG 60.001 47.619 0.00 0.00 0.00 3.16
2807 9585 1.001487 CTCTGCCATTTCAACGCACAA 60.001 47.619 0.00 0.00 0.00 3.33
2808 9586 0.592637 CTCTGCCATTTCAACGCACA 59.407 50.000 0.00 0.00 0.00 4.57
2809 9587 0.593128 ACTCTGCCATTTCAACGCAC 59.407 50.000 0.00 0.00 0.00 5.34
2810 9588 1.001487 CAACTCTGCCATTTCAACGCA 60.001 47.619 0.00 0.00 0.00 5.24
2811 9589 1.689959 CAACTCTGCCATTTCAACGC 58.310 50.000 0.00 0.00 0.00 4.84
2812 9590 1.689959 GCAACTCTGCCATTTCAACG 58.310 50.000 0.00 0.00 43.26 4.10
2823 9601 0.391661 ATGCCTACCGTGCAACTCTG 60.392 55.000 0.00 0.00 42.92 3.35
2824 9602 0.324943 AATGCCTACCGTGCAACTCT 59.675 50.000 0.00 0.00 42.92 3.24
2825 9603 0.727398 GAATGCCTACCGTGCAACTC 59.273 55.000 0.00 0.00 42.92 3.01
2826 9604 0.036164 TGAATGCCTACCGTGCAACT 59.964 50.000 0.00 0.00 42.92 3.16
2827 9605 0.878416 TTGAATGCCTACCGTGCAAC 59.122 50.000 0.00 0.00 42.92 4.17
2828 9606 1.539388 CTTTGAATGCCTACCGTGCAA 59.461 47.619 0.00 0.00 42.92 4.08
2829 9607 1.164411 CTTTGAATGCCTACCGTGCA 58.836 50.000 0.00 0.00 43.97 4.57
2830 9608 0.451783 CCTTTGAATGCCTACCGTGC 59.548 55.000 0.00 0.00 0.00 5.34
2831 9609 1.094785 CCCTTTGAATGCCTACCGTG 58.905 55.000 0.00 0.00 0.00 4.94
2832 9610 0.034477 CCCCTTTGAATGCCTACCGT 60.034 55.000 0.00 0.00 0.00 4.83
2833 9611 0.254747 TCCCCTTTGAATGCCTACCG 59.745 55.000 0.00 0.00 0.00 4.02
2834 9612 2.525105 TTCCCCTTTGAATGCCTACC 57.475 50.000 0.00 0.00 0.00 3.18
2835 9613 4.758688 CAAATTCCCCTTTGAATGCCTAC 58.241 43.478 0.00 0.00 38.17 3.18
2836 9614 3.197549 GCAAATTCCCCTTTGAATGCCTA 59.802 43.478 0.97 0.00 38.17 3.93
2837 9615 2.026915 GCAAATTCCCCTTTGAATGCCT 60.027 45.455 0.97 0.00 38.17 4.75
2838 9616 2.290197 TGCAAATTCCCCTTTGAATGCC 60.290 45.455 0.97 0.00 38.17 4.40
2839 9617 3.004862 CTGCAAATTCCCCTTTGAATGC 58.995 45.455 0.97 0.00 38.17 3.56
2840 9618 3.008266 ACCTGCAAATTCCCCTTTGAATG 59.992 43.478 0.97 0.00 38.17 2.67
2841 9619 3.250617 ACCTGCAAATTCCCCTTTGAAT 58.749 40.909 0.97 0.00 38.17 2.57
2842 9620 2.632512 GACCTGCAAATTCCCCTTTGAA 59.367 45.455 0.97 0.00 38.17 2.69
2843 9621 2.158325 AGACCTGCAAATTCCCCTTTGA 60.158 45.455 0.97 0.00 38.17 2.69
2844 9622 2.028748 CAGACCTGCAAATTCCCCTTTG 60.029 50.000 0.00 0.00 38.79 2.77
2845 9623 2.158325 TCAGACCTGCAAATTCCCCTTT 60.158 45.455 0.00 0.00 0.00 3.11
2846 9624 1.428912 TCAGACCTGCAAATTCCCCTT 59.571 47.619 0.00 0.00 0.00 3.95
2847 9625 1.075601 TCAGACCTGCAAATTCCCCT 58.924 50.000 0.00 0.00 0.00 4.79
2848 9626 1.177401 GTCAGACCTGCAAATTCCCC 58.823 55.000 0.00 0.00 0.00 4.81
2849 9627 2.087646 GAGTCAGACCTGCAAATTCCC 58.912 52.381 0.00 0.00 0.00 3.97
2850 9628 3.006247 GAGAGTCAGACCTGCAAATTCC 58.994 50.000 0.00 0.00 0.00 3.01
2851 9629 3.668447 TGAGAGTCAGACCTGCAAATTC 58.332 45.455 0.00 0.00 0.00 2.17
2852 9630 3.777106 TGAGAGTCAGACCTGCAAATT 57.223 42.857 0.00 0.00 0.00 1.82
2863 9641 2.564504 TCCATGGTGTTCTGAGAGTCAG 59.435 50.000 12.58 0.00 45.59 3.51
2864 9642 2.300152 GTCCATGGTGTTCTGAGAGTCA 59.700 50.000 12.58 0.00 0.00 3.41
2865 9643 2.300152 TGTCCATGGTGTTCTGAGAGTC 59.700 50.000 12.58 0.00 0.00 3.36
2866 9644 2.301296 CTGTCCATGGTGTTCTGAGAGT 59.699 50.000 12.58 0.00 0.00 3.24
2867 9645 2.934364 GCTGTCCATGGTGTTCTGAGAG 60.934 54.545 12.58 0.00 0.00 3.20
2868 9646 1.002430 GCTGTCCATGGTGTTCTGAGA 59.998 52.381 12.58 0.00 0.00 3.27
2869 9647 1.002888 AGCTGTCCATGGTGTTCTGAG 59.997 52.381 12.58 0.00 0.00 3.35
2870 9648 1.059098 AGCTGTCCATGGTGTTCTGA 58.941 50.000 12.58 0.00 0.00 3.27
2871 9649 1.162698 CAGCTGTCCATGGTGTTCTG 58.837 55.000 12.58 11.34 0.00 3.02
2872 9650 0.037303 CCAGCTGTCCATGGTGTTCT 59.963 55.000 13.81 2.65 0.00 3.01
2873 9651 2.559785 CCAGCTGTCCATGGTGTTC 58.440 57.895 13.81 2.06 0.00 3.18
2874 9652 4.828409 CCAGCTGTCCATGGTGTT 57.172 55.556 13.81 0.00 0.00 3.32
2878 9656 1.300971 CGTTGACCAGCTGTCCATGG 61.301 60.000 13.81 4.97 43.78 3.66
2879 9657 0.603707 ACGTTGACCAGCTGTCCATG 60.604 55.000 13.81 9.85 43.78 3.66
2880 9658 0.973632 TACGTTGACCAGCTGTCCAT 59.026 50.000 13.81 0.00 43.78 3.41
2881 9659 0.973632 ATACGTTGACCAGCTGTCCA 59.026 50.000 13.81 7.08 43.78 4.02
2882 9660 1.641577 GATACGTTGACCAGCTGTCC 58.358 55.000 13.81 4.25 43.78 4.02
2883 9661 1.067142 TGGATACGTTGACCAGCTGTC 60.067 52.381 13.81 10.82 42.16 3.51
2884 9662 0.973632 TGGATACGTTGACCAGCTGT 59.026 50.000 13.81 0.11 42.51 4.40
2885 9663 1.359848 GTGGATACGTTGACCAGCTG 58.640 55.000 6.78 6.78 42.51 4.24
2886 9664 0.249398 GGTGGATACGTTGACCAGCT 59.751 55.000 21.42 0.00 45.15 4.24
2887 9665 2.007049 CTGGTGGATACGTTGACCAGC 61.007 57.143 21.71 21.71 46.72 4.85
2889 9667 0.036765 GCTGGTGGATACGTTGACCA 60.037 55.000 0.00 0.00 42.51 4.02
2890 9668 0.036765 TGCTGGTGGATACGTTGACC 60.037 55.000 0.00 0.00 42.51 4.02
2891 9669 1.359848 CTGCTGGTGGATACGTTGAC 58.640 55.000 0.00 0.00 42.51 3.18
2892 9670 0.391130 GCTGCTGGTGGATACGTTGA 60.391 55.000 0.00 0.00 42.51 3.18
2893 9671 1.695893 CGCTGCTGGTGGATACGTTG 61.696 60.000 0.00 0.00 42.51 4.10
2894 9672 1.447838 CGCTGCTGGTGGATACGTT 60.448 57.895 0.00 0.00 42.51 3.99
2895 9673 2.184322 CGCTGCTGGTGGATACGT 59.816 61.111 0.00 0.00 42.51 3.57
2896 9674 3.264897 GCGCTGCTGGTGGATACG 61.265 66.667 0.00 0.00 42.51 3.06
2897 9675 1.884926 GAGCGCTGCTGGTGGATAC 60.885 63.158 18.48 0.00 39.88 2.24
2898 9676 2.501128 GAGCGCTGCTGGTGGATA 59.499 61.111 18.48 0.00 39.88 2.59
2899 9677 4.479993 GGAGCGCTGCTGGTGGAT 62.480 66.667 22.85 0.00 39.88 3.41
2912 9690 4.767255 CACCACGAGGCAGGGAGC 62.767 72.222 0.00 0.00 44.65 4.70
2913 9691 2.111999 TTTCACCACGAGGCAGGGAG 62.112 60.000 0.00 0.00 39.06 4.30
2914 9692 1.701031 TTTTCACCACGAGGCAGGGA 61.701 55.000 0.00 0.00 39.06 4.20
2915 9693 0.609131 ATTTTCACCACGAGGCAGGG 60.609 55.000 0.00 0.00 39.06 4.45
2916 9694 0.804989 GATTTTCACCACGAGGCAGG 59.195 55.000 0.00 0.00 39.06 4.85
2917 9695 0.443869 CGATTTTCACCACGAGGCAG 59.556 55.000 0.00 0.00 39.06 4.85
2918 9696 0.034198 TCGATTTTCACCACGAGGCA 59.966 50.000 0.00 0.00 39.06 4.75
2919 9697 0.721718 CTCGATTTTCACCACGAGGC 59.278 55.000 0.00 0.00 45.22 4.70
2922 9700 1.999735 GCATCTCGATTTTCACCACGA 59.000 47.619 0.00 0.00 0.00 4.35
2923 9701 1.062587 GGCATCTCGATTTTCACCACG 59.937 52.381 0.00 0.00 0.00 4.94
2924 9702 1.401905 GGGCATCTCGATTTTCACCAC 59.598 52.381 0.00 0.00 0.00 4.16
2925 9703 1.004161 TGGGCATCTCGATTTTCACCA 59.996 47.619 0.00 0.00 0.00 4.17
2926 9704 1.672881 CTGGGCATCTCGATTTTCACC 59.327 52.381 0.00 0.00 0.00 4.02
2927 9705 2.632377 TCTGGGCATCTCGATTTTCAC 58.368 47.619 0.00 0.00 0.00 3.18
2928 9706 3.348647 TTCTGGGCATCTCGATTTTCA 57.651 42.857 0.00 0.00 0.00 2.69
2929 9707 3.004106 CCATTCTGGGCATCTCGATTTTC 59.996 47.826 0.00 0.00 32.67 2.29
2930 9708 2.954318 CCATTCTGGGCATCTCGATTTT 59.046 45.455 0.00 0.00 32.67 1.82
2931 9709 2.173356 TCCATTCTGGGCATCTCGATTT 59.827 45.455 0.00 0.00 38.32 2.17
2932 9710 1.770658 TCCATTCTGGGCATCTCGATT 59.229 47.619 0.00 0.00 38.32 3.34
2933 9711 1.427809 TCCATTCTGGGCATCTCGAT 58.572 50.000 0.00 0.00 38.32 3.59
2934 9712 1.427809 ATCCATTCTGGGCATCTCGA 58.572 50.000 0.00 0.00 38.32 4.04
2935 9713 2.267174 AATCCATTCTGGGCATCTCG 57.733 50.000 0.00 0.00 38.32 4.04
2936 9714 4.070716 CACTAATCCATTCTGGGCATCTC 58.929 47.826 0.00 0.00 38.32 2.75
2937 9715 3.461085 ACACTAATCCATTCTGGGCATCT 59.539 43.478 0.00 0.00 38.32 2.90
2938 9716 3.825328 ACACTAATCCATTCTGGGCATC 58.175 45.455 0.00 0.00 38.32 3.91
2939 9717 3.959495 ACACTAATCCATTCTGGGCAT 57.041 42.857 0.00 0.00 38.32 4.40
2940 9718 3.010027 TGAACACTAATCCATTCTGGGCA 59.990 43.478 0.00 0.00 38.32 5.36
2941 9719 3.620488 TGAACACTAATCCATTCTGGGC 58.380 45.455 0.00 0.00 38.32 5.36
2942 9720 4.202441 CCTGAACACTAATCCATTCTGGG 58.798 47.826 0.00 0.00 38.32 4.45
2943 9721 3.629398 GCCTGAACACTAATCCATTCTGG 59.371 47.826 0.00 0.00 40.96 3.86
2944 9722 4.264253 TGCCTGAACACTAATCCATTCTG 58.736 43.478 0.00 0.00 0.00 3.02
2945 9723 4.574674 TGCCTGAACACTAATCCATTCT 57.425 40.909 0.00 0.00 0.00 2.40
2946 9724 4.458989 TGTTGCCTGAACACTAATCCATTC 59.541 41.667 0.00 0.00 39.78 2.67
2947 9725 4.406456 TGTTGCCTGAACACTAATCCATT 58.594 39.130 0.00 0.00 39.78 3.16
2948 9726 4.032960 TGTTGCCTGAACACTAATCCAT 57.967 40.909 0.00 0.00 39.78 3.41
2949 9727 3.500448 TGTTGCCTGAACACTAATCCA 57.500 42.857 0.00 0.00 39.78 3.41
2965 9743 0.244450 AAATCGGCCAGCATGTGTTG 59.756 50.000 2.24 0.00 0.00 3.33
2966 9744 0.968405 AAAATCGGCCAGCATGTGTT 59.032 45.000 2.24 0.00 0.00 3.32
2967 9745 0.527565 GAAAATCGGCCAGCATGTGT 59.472 50.000 2.24 0.00 0.00 3.72
2968 9746 0.523968 CGAAAATCGGCCAGCATGTG 60.524 55.000 2.24 0.00 36.00 3.21
2969 9747 0.960364 ACGAAAATCGGCCAGCATGT 60.960 50.000 2.24 0.00 45.59 3.21
2970 9748 0.523968 CACGAAAATCGGCCAGCATG 60.524 55.000 2.24 0.00 45.59 4.06
2971 9749 0.676466 TCACGAAAATCGGCCAGCAT 60.676 50.000 2.24 0.00 45.59 3.79
2972 9750 0.676466 ATCACGAAAATCGGCCAGCA 60.676 50.000 2.24 0.00 45.59 4.41
2973 9751 0.451783 AATCACGAAAATCGGCCAGC 59.548 50.000 2.24 0.00 45.59 4.85
2974 9752 2.161410 TCAAATCACGAAAATCGGCCAG 59.839 45.455 2.24 0.00 45.59 4.85
2975 9753 2.095466 GTCAAATCACGAAAATCGGCCA 60.095 45.455 2.24 0.00 45.59 5.36
2976 9754 2.515912 GTCAAATCACGAAAATCGGCC 58.484 47.619 4.66 0.00 45.59 6.13
2977 9755 2.515912 GGTCAAATCACGAAAATCGGC 58.484 47.619 4.66 0.00 45.59 5.54
2978 9756 2.747446 AGGGTCAAATCACGAAAATCGG 59.253 45.455 4.66 0.00 45.59 4.18
2979 9757 4.419522 AAGGGTCAAATCACGAAAATCG 57.580 40.909 0.00 0.00 46.93 3.34
2980 9758 6.308041 GCTAAAAGGGTCAAATCACGAAAATC 59.692 38.462 0.00 0.00 0.00 2.17
2981 9759 6.156519 GCTAAAAGGGTCAAATCACGAAAAT 58.843 36.000 0.00 0.00 0.00 1.82
2982 9760 5.067936 TGCTAAAAGGGTCAAATCACGAAAA 59.932 36.000 0.00 0.00 0.00 2.29
2983 9761 4.580995 TGCTAAAAGGGTCAAATCACGAAA 59.419 37.500 0.00 0.00 0.00 3.46
2984 9762 4.023536 GTGCTAAAAGGGTCAAATCACGAA 60.024 41.667 0.00 0.00 0.00 3.85
2985 9763 3.500680 GTGCTAAAAGGGTCAAATCACGA 59.499 43.478 0.00 0.00 0.00 4.35
2986 9764 3.252215 TGTGCTAAAAGGGTCAAATCACG 59.748 43.478 0.00 0.00 0.00 4.35
2987 9765 4.278419 ACTGTGCTAAAAGGGTCAAATCAC 59.722 41.667 0.00 0.00 0.00 3.06
2988 9766 4.469657 ACTGTGCTAAAAGGGTCAAATCA 58.530 39.130 0.00 0.00 0.00 2.57
2989 9767 5.453567 AACTGTGCTAAAAGGGTCAAATC 57.546 39.130 0.00 0.00 0.00 2.17
2990 9768 5.869649 AAACTGTGCTAAAAGGGTCAAAT 57.130 34.783 0.00 0.00 0.00 2.32
2991 9769 6.566141 GTTAAACTGTGCTAAAAGGGTCAAA 58.434 36.000 0.00 0.00 0.00 2.69
2992 9770 5.220892 CGTTAAACTGTGCTAAAAGGGTCAA 60.221 40.000 0.00 0.00 0.00 3.18
2993 9771 4.273969 CGTTAAACTGTGCTAAAAGGGTCA 59.726 41.667 0.00 0.00 0.00 4.02
2994 9772 4.512571 TCGTTAAACTGTGCTAAAAGGGTC 59.487 41.667 0.00 0.00 0.00 4.46
2995 9773 4.453751 TCGTTAAACTGTGCTAAAAGGGT 58.546 39.130 0.00 0.00 0.00 4.34
2996 9774 4.753107 TCTCGTTAAACTGTGCTAAAAGGG 59.247 41.667 0.00 0.00 0.00 3.95
2997 9775 5.917541 TCTCGTTAAACTGTGCTAAAAGG 57.082 39.130 0.00 0.00 0.00 3.11
2998 9776 6.534934 GGATCTCGTTAAACTGTGCTAAAAG 58.465 40.000 0.00 0.00 0.00 2.27
2999 9777 5.119588 CGGATCTCGTTAAACTGTGCTAAAA 59.880 40.000 0.00 0.00 0.00 1.52
3000 9778 4.624024 CGGATCTCGTTAAACTGTGCTAAA 59.376 41.667 0.00 0.00 0.00 1.85
3001 9779 4.082625 TCGGATCTCGTTAAACTGTGCTAA 60.083 41.667 0.00 0.00 40.32 3.09
3002 9780 3.441222 TCGGATCTCGTTAAACTGTGCTA 59.559 43.478 0.00 0.00 40.32 3.49
3003 9781 2.230508 TCGGATCTCGTTAAACTGTGCT 59.769 45.455 0.00 0.00 40.32 4.40
3004 9782 2.344741 GTCGGATCTCGTTAAACTGTGC 59.655 50.000 0.00 0.00 40.32 4.57
3005 9783 2.921754 GGTCGGATCTCGTTAAACTGTG 59.078 50.000 0.00 0.00 40.32 3.66
3006 9784 2.094338 GGGTCGGATCTCGTTAAACTGT 60.094 50.000 0.00 0.00 40.32 3.55
3007 9785 2.537401 GGGTCGGATCTCGTTAAACTG 58.463 52.381 0.00 0.00 40.32 3.16
3008 9786 1.479730 GGGGTCGGATCTCGTTAAACT 59.520 52.381 0.00 0.00 40.32 2.66
3009 9787 1.800286 CGGGGTCGGATCTCGTTAAAC 60.800 57.143 1.47 0.00 40.32 2.01
3010 9788 0.457035 CGGGGTCGGATCTCGTTAAA 59.543 55.000 1.47 0.00 40.32 1.52
3011 9789 0.680921 ACGGGGTCGGATCTCGTTAA 60.681 55.000 11.02 0.00 41.39 2.01
3012 9790 0.680921 AACGGGGTCGGATCTCGTTA 60.681 55.000 26.15 0.00 41.35 3.18
3013 9791 1.538687 AAACGGGGTCGGATCTCGTT 61.539 55.000 22.41 22.41 44.34 3.85
3014 9792 1.941999 GAAACGGGGTCGGATCTCGT 61.942 60.000 11.02 11.02 41.39 4.18
3015 9793 1.226888 GAAACGGGGTCGGATCTCG 60.227 63.158 9.38 9.38 41.39 4.04
3016 9794 0.248289 TTGAAACGGGGTCGGATCTC 59.752 55.000 0.00 0.00 41.39 2.75
3017 9795 0.688487 TTTGAAACGGGGTCGGATCT 59.312 50.000 0.00 0.00 41.39 2.75
3018 9796 1.746470 ATTTGAAACGGGGTCGGATC 58.254 50.000 0.00 0.00 41.39 3.36
3019 9797 3.570912 ATATTTGAAACGGGGTCGGAT 57.429 42.857 0.00 0.00 41.39 4.18
3020 9798 3.353370 AATATTTGAAACGGGGTCGGA 57.647 42.857 0.00 0.00 41.39 4.55
3021 9799 4.443913 AAAATATTTGAAACGGGGTCGG 57.556 40.909 0.39 0.00 41.39 4.79
3038 9816 9.772973 GTAGGAAAAGGGTTAAATGTCAAAAAT 57.227 29.630 0.00 0.00 0.00 1.82
3039 9817 8.205512 GGTAGGAAAAGGGTTAAATGTCAAAAA 58.794 33.333 0.00 0.00 0.00 1.94
3040 9818 7.470286 CGGTAGGAAAAGGGTTAAATGTCAAAA 60.470 37.037 0.00 0.00 0.00 2.44
3041 9819 6.016108 CGGTAGGAAAAGGGTTAAATGTCAAA 60.016 38.462 0.00 0.00 0.00 2.69
3042 9820 5.474189 CGGTAGGAAAAGGGTTAAATGTCAA 59.526 40.000 0.00 0.00 0.00 3.18
3043 9821 5.005094 CGGTAGGAAAAGGGTTAAATGTCA 58.995 41.667 0.00 0.00 0.00 3.58
3044 9822 5.005740 ACGGTAGGAAAAGGGTTAAATGTC 58.994 41.667 0.00 0.00 0.00 3.06
3045 9823 4.989277 ACGGTAGGAAAAGGGTTAAATGT 58.011 39.130 0.00 0.00 0.00 2.71
3046 9824 5.250982 AGACGGTAGGAAAAGGGTTAAATG 58.749 41.667 0.00 0.00 0.00 2.32
3047 9825 5.509832 AGACGGTAGGAAAAGGGTTAAAT 57.490 39.130 0.00 0.00 0.00 1.40
3048 9826 4.980339 AGACGGTAGGAAAAGGGTTAAA 57.020 40.909 0.00 0.00 0.00 1.52
3049 9827 4.505390 CCAAGACGGTAGGAAAAGGGTTAA 60.505 45.833 0.00 0.00 0.00 2.01
3050 9828 3.008266 CCAAGACGGTAGGAAAAGGGTTA 59.992 47.826 0.00 0.00 0.00 2.85
3051 9829 2.224695 CCAAGACGGTAGGAAAAGGGTT 60.225 50.000 0.00 0.00 0.00 4.11
3052 9830 1.350019 CCAAGACGGTAGGAAAAGGGT 59.650 52.381 0.00 0.00 0.00 4.34
3053 9831 1.339727 CCCAAGACGGTAGGAAAAGGG 60.340 57.143 0.00 0.00 0.00 3.95
3054 9832 1.350019 ACCCAAGACGGTAGGAAAAGG 59.650 52.381 0.00 0.00 33.04 3.11
3055 9833 2.614734 GGACCCAAGACGGTAGGAAAAG 60.615 54.545 0.00 0.00 35.79 2.27
3056 9834 1.348696 GGACCCAAGACGGTAGGAAAA 59.651 52.381 0.00 0.00 35.79 2.29
3057 9835 0.978907 GGACCCAAGACGGTAGGAAA 59.021 55.000 0.00 0.00 35.79 3.13
3058 9836 0.906282 GGGACCCAAGACGGTAGGAA 60.906 60.000 5.33 0.00 35.79 3.36
3059 9837 1.305549 GGGACCCAAGACGGTAGGA 60.306 63.158 5.33 0.00 35.79 2.94
3060 9838 2.718073 CGGGACCCAAGACGGTAGG 61.718 68.421 12.15 0.00 35.79 3.18
3061 9839 2.718073 CCGGGACCCAAGACGGTAG 61.718 68.421 12.15 0.00 41.34 3.18
3062 9840 2.681064 CCGGGACCCAAGACGGTA 60.681 66.667 12.15 0.00 41.34 4.02
3066 9844 2.365095 CTATCGCCGGGACCCAAGAC 62.365 65.000 12.15 0.00 0.00 3.01
3067 9845 2.042741 TATCGCCGGGACCCAAGA 60.043 61.111 12.15 6.69 0.00 3.02
3068 9846 2.421739 CTATCGCCGGGACCCAAG 59.578 66.667 12.15 1.74 0.00 3.61
3069 9847 3.158648 CCTATCGCCGGGACCCAA 61.159 66.667 12.15 0.00 0.00 4.12
3072 9850 3.159347 AACCCTATCGCCGGGACC 61.159 66.667 2.18 0.00 44.90 4.46
3073 9851 2.108362 CAACCCTATCGCCGGGAC 59.892 66.667 2.18 0.00 44.90 4.46
3074 9852 3.857038 GCAACCCTATCGCCGGGA 61.857 66.667 2.18 0.00 44.90 5.14
3076 9854 0.670546 CTATGCAACCCTATCGCCGG 60.671 60.000 0.00 0.00 0.00 6.13
3077 9855 0.670546 CCTATGCAACCCTATCGCCG 60.671 60.000 0.00 0.00 0.00 6.46
3078 9856 0.955919 GCCTATGCAACCCTATCGCC 60.956 60.000 0.00 0.00 37.47 5.54
3079 9857 0.035458 AGCCTATGCAACCCTATCGC 59.965 55.000 0.00 0.00 41.13 4.58
3080 9858 2.353803 GGTAGCCTATGCAACCCTATCG 60.354 54.545 0.00 0.00 41.13 2.92
3081 9859 2.353803 CGGTAGCCTATGCAACCCTATC 60.354 54.545 0.00 0.00 41.13 2.08
3082 9860 1.623811 CGGTAGCCTATGCAACCCTAT 59.376 52.381 0.00 0.00 41.13 2.57
3083 9861 1.045407 CGGTAGCCTATGCAACCCTA 58.955 55.000 0.00 0.00 41.13 3.53
3084 9862 1.830145 CGGTAGCCTATGCAACCCT 59.170 57.895 0.00 0.00 41.13 4.34
3085 9863 1.892391 GCGGTAGCCTATGCAACCC 60.892 63.158 0.00 0.00 41.13 4.11
3086 9864 3.732470 GCGGTAGCCTATGCAACC 58.268 61.111 0.00 0.00 41.13 3.77
3096 9874 2.461110 CGTTGGTCATGGCGGTAGC 61.461 63.158 0.00 0.00 44.18 3.58
3097 9875 1.813753 CCGTTGGTCATGGCGGTAG 60.814 63.158 0.00 0.00 39.41 3.18
3098 9876 2.266372 CCGTTGGTCATGGCGGTA 59.734 61.111 0.00 0.00 39.41 4.02
3103 9881 1.813753 CTACCGCCGTTGGTCATGG 60.814 63.158 0.00 0.00 42.62 3.66
3104 9882 1.813753 CCTACCGCCGTTGGTCATG 60.814 63.158 0.00 0.00 42.62 3.07
3105 9883 2.582436 CCTACCGCCGTTGGTCAT 59.418 61.111 0.00 0.00 42.62 3.06
3106 9884 3.697747 CCCTACCGCCGTTGGTCA 61.698 66.667 0.00 0.00 42.62 4.02
3107 9885 1.887344 TTACCCTACCGCCGTTGGTC 61.887 60.000 0.00 0.00 42.62 4.02
3108 9886 1.912763 TTACCCTACCGCCGTTGGT 60.913 57.895 5.15 1.17 46.26 3.67
3109 9887 1.448365 GTTACCCTACCGCCGTTGG 60.448 63.158 0.00 0.00 34.93 3.77
3110 9888 1.806758 CGTTACCCTACCGCCGTTG 60.807 63.158 0.00 0.00 0.00 4.10
3111 9889 2.573340 CGTTACCCTACCGCCGTT 59.427 61.111 0.00 0.00 0.00 4.44
3112 9890 3.451894 CCGTTACCCTACCGCCGT 61.452 66.667 0.00 0.00 0.00 5.68
3113 9891 4.878682 GCCGTTACCCTACCGCCG 62.879 72.222 0.00 0.00 0.00 6.46
3114 9892 3.728279 CTGCCGTTACCCTACCGCC 62.728 68.421 0.00 0.00 0.00 6.13
3115 9893 2.202837 CTGCCGTTACCCTACCGC 60.203 66.667 0.00 0.00 0.00 5.68
3116 9894 2.497770 CCTGCCGTTACCCTACCG 59.502 66.667 0.00 0.00 0.00 4.02
3117 9895 2.188731 GCCTGCCGTTACCCTACC 59.811 66.667 0.00 0.00 0.00 3.18
3118 9896 2.202837 CGCCTGCCGTTACCCTAC 60.203 66.667 0.00 0.00 0.00 3.18
3119 9897 4.151582 GCGCCTGCCGTTACCCTA 62.152 66.667 0.00 0.00 39.71 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.