Multiple sequence alignment - TraesCS2D01G081500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G081500 chr2D 100.000 5070 0 0 1 5070 35026731 35021662 0.000000e+00 9363.0
1 TraesCS2D01G081500 chr2D 83.776 2712 270 76 1661 4284 35002606 34999977 0.000000e+00 2414.0
2 TraesCS2D01G081500 chr2D 85.803 641 49 18 902 1504 35003376 35002740 4.280000e-180 641.0
3 TraesCS2D01G081500 chr2D 97.222 36 1 0 1279 1314 398670319 398670284 1.520000e-05 62.1
4 TraesCS2D01G081500 chr2A 93.086 2690 150 17 2405 5069 38331390 38328712 0.000000e+00 3904.0
5 TraesCS2D01G081500 chr2A 84.386 2754 289 63 1616 4280 38324144 38321443 0.000000e+00 2573.0
6 TraesCS2D01G081500 chr2A 88.457 1750 123 37 614 2336 38333111 38331414 0.000000e+00 2039.0
7 TraesCS2D01G081500 chr2A 85.196 662 65 17 909 1547 38324936 38324285 0.000000e+00 649.0
8 TraesCS2D01G081500 chr2A 90.712 323 11 10 239 542 38333434 38333112 3.650000e-111 412.0
9 TraesCS2D01G081500 chr2A 93.519 108 7 0 22 129 38333606 38333499 1.460000e-35 161.0
10 TraesCS2D01G081500 chr2A 97.674 86 2 0 154 239 568412706 568412791 1.140000e-31 148.0
11 TraesCS2D01G081500 chr2B 92.543 2588 153 17 2378 4936 57780283 57777707 0.000000e+00 3674.0
12 TraesCS2D01G081500 chr2B 84.109 2706 280 71 1661 4284 57682003 57679366 0.000000e+00 2477.0
13 TraesCS2D01G081500 chr2B 88.997 1645 125 28 718 2341 57781898 57780289 0.000000e+00 1984.0
14 TraesCS2D01G081500 chr2B 86.169 629 51 16 904 1504 57682757 57682137 0.000000e+00 647.0
15 TraesCS2D01G081500 chr2B 88.186 474 25 15 237 692 57782357 57781897 2.080000e-148 536.0
16 TraesCS2D01G081500 chr2B 96.454 141 5 0 17 157 57782494 57782354 3.050000e-57 233.0
17 TraesCS2D01G081500 chr2B 93.162 117 8 0 4930 5046 57692176 57692060 6.750000e-39 172.0
18 TraesCS2D01G081500 chr2B 97.802 91 0 2 153 241 354073695 354073605 6.800000e-34 156.0
19 TraesCS2D01G081500 chr2B 93.750 48 3 0 580 627 510797331 510797378 7.040000e-09 73.1
20 TraesCS2D01G081500 chr2B 97.222 36 1 0 1279 1314 471320431 471320466 1.520000e-05 62.1
21 TraesCS2D01G081500 chr7D 75.957 1123 179 63 1625 2709 8294013 8292944 1.270000e-135 494.0
22 TraesCS2D01G081500 chr7D 79.045 649 86 32 3055 3664 8292658 8292021 2.840000e-107 399.0
23 TraesCS2D01G081500 chr7D 81.132 530 64 21 993 1504 8333658 8333147 4.760000e-105 392.0
24 TraesCS2D01G081500 chr7A 75.225 1001 165 57 1730 2710 8751531 8750594 1.020000e-106 398.0
25 TraesCS2D01G081500 chr7A 81.059 491 74 14 3055 3530 8750305 8749819 1.720000e-99 374.0
26 TraesCS2D01G081500 chr7A 88.976 127 12 2 4441 4567 350706928 350707052 6.800000e-34 156.0
27 TraesCS2D01G081500 chr7A 92.000 75 6 0 1661 1735 8756946 8756872 6.940000e-19 106.0
28 TraesCS2D01G081500 chr4A 78.060 670 109 27 1666 2322 731420103 731420747 6.160000e-104 388.0
29 TraesCS2D01G081500 chr4A 80.579 484 77 12 3055 3527 731421430 731421907 1.740000e-94 357.0
30 TraesCS2D01G081500 chr4A 98.851 87 1 0 153 239 614251429 614251515 6.800000e-34 156.0
31 TraesCS2D01G081500 chr4A 84.298 121 16 2 4441 4559 422730306 422730425 1.150000e-21 115.0
32 TraesCS2D01G081500 chr6A 88.793 232 25 1 3071 3302 543207136 543206906 2.990000e-72 283.0
33 TraesCS2D01G081500 chr6A 86.765 136 15 2 997 1129 543210790 543210655 1.140000e-31 148.0
34 TraesCS2D01G081500 chr6A 73.469 490 84 27 2432 2909 543207792 543207337 5.290000e-30 143.0
35 TraesCS2D01G081500 chr6A 88.710 62 6 1 568 628 422376091 422376152 1.960000e-09 75.0
36 TraesCS2D01G081500 chr6B 78.729 409 61 15 997 1391 593358833 593358437 3.030000e-62 250.0
37 TraesCS2D01G081500 chr6B 95.745 94 4 0 147 240 468624569 468624662 8.790000e-33 152.0
38 TraesCS2D01G081500 chr6B 95.745 94 4 0 147 240 468652662 468652755 8.790000e-33 152.0
39 TraesCS2D01G081500 chr6B 89.216 102 9 2 527 627 566341280 566341380 5.330000e-25 126.0
40 TraesCS2D01G081500 chr6B 92.453 53 3 1 577 628 573353083 573353031 1.960000e-09 75.0
41 TraesCS2D01G081500 chr3B 92.568 148 10 1 4901 5048 58853815 58853961 1.430000e-50 211.0
42 TraesCS2D01G081500 chr3B 94.340 53 3 0 574 626 487879985 487879933 1.170000e-11 82.4
43 TraesCS2D01G081500 chrUn 87.356 174 17 3 4901 5070 131209272 131209100 1.440000e-45 195.0
44 TraesCS2D01G081500 chrUn 97.826 92 2 0 147 238 403380518 403380609 5.250000e-35 159.0
45 TraesCS2D01G081500 chrUn 100.000 32 0 0 4901 4932 131209424 131209393 5.480000e-05 60.2
46 TraesCS2D01G081500 chr7B 98.876 89 1 0 153 241 440325689 440325601 5.250000e-35 159.0
47 TraesCS2D01G081500 chr7B 94.545 55 3 0 574 628 188928303 188928357 9.040000e-13 86.1
48 TraesCS2D01G081500 chr1D 98.864 88 1 0 153 240 402722638 402722725 1.890000e-34 158.0
49 TraesCS2D01G081500 chr1D 83.810 105 16 1 4442 4546 26289377 26289274 1.160000e-16 99.0
50 TraesCS2D01G081500 chr1D 90.909 55 4 1 573 627 331602904 331602957 7.040000e-09 73.1
51 TraesCS2D01G081500 chr6D 73.931 491 81 27 2432 2909 396841234 396840778 2.440000e-33 154.0
52 TraesCS2D01G081500 chr6D 86.765 136 15 2 997 1129 396845853 396845718 1.140000e-31 148.0
53 TraesCS2D01G081500 chr1B 97.753 89 2 0 153 241 253016261 253016349 2.440000e-33 154.0
54 TraesCS2D01G081500 chr1B 89.815 108 11 0 4455 4562 173420983 173420876 6.840000e-29 139.0
55 TraesCS2D01G081500 chr1B 92.727 55 3 1 572 626 496471298 496471351 1.510000e-10 78.7
56 TraesCS2D01G081500 chr4B 86.555 119 14 2 4444 4561 500744967 500745084 4.120000e-26 130.0
57 TraesCS2D01G081500 chr3D 94.366 71 4 0 4892 4962 613435637 613435707 5.370000e-20 110.0
58 TraesCS2D01G081500 chr1A 80.672 119 21 2 4443 4561 27355749 27355633 1.940000e-14 91.6
59 TraesCS2D01G081500 chr1A 100.000 39 0 0 4441 4479 513566261 513566299 7.040000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G081500 chr2D 35021662 35026731 5069 True 9363.00 9363 100.0000 1 5070 1 chr2D.!!$R1 5069
1 TraesCS2D01G081500 chr2D 34999977 35003376 3399 True 1527.50 2414 84.7895 902 4284 2 chr2D.!!$R3 3382
2 TraesCS2D01G081500 chr2A 38321443 38333606 12163 True 1623.00 3904 89.2260 22 5069 6 chr2A.!!$R1 5047
3 TraesCS2D01G081500 chr2B 57777707 57782494 4787 True 1606.75 3674 91.5450 17 4936 4 chr2B.!!$R4 4919
4 TraesCS2D01G081500 chr2B 57679366 57682757 3391 True 1562.00 2477 85.1390 904 4284 2 chr2B.!!$R3 3380
5 TraesCS2D01G081500 chr7D 8292021 8294013 1992 True 446.50 494 77.5010 1625 3664 2 chr7D.!!$R2 2039
6 TraesCS2D01G081500 chr7D 8333147 8333658 511 True 392.00 392 81.1320 993 1504 1 chr7D.!!$R1 511
7 TraesCS2D01G081500 chr7A 8749819 8751531 1712 True 386.00 398 78.1420 1730 3530 2 chr7A.!!$R2 1800
8 TraesCS2D01G081500 chr4A 731420103 731421907 1804 False 372.50 388 79.3195 1666 3527 2 chr4A.!!$F3 1861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 198 0.033306 AAGACCTCCGACCTACTCCC 60.033 60.000 0.00 0.0 0.00 4.30 F
161 200 0.466007 GACCTCCGACCTACTCCCTC 60.466 65.000 0.00 0.0 0.00 4.30 F
1526 1660 0.036858 TGAATTGGCATCGGACGTGA 60.037 50.000 0.00 0.0 0.00 4.35 F
1681 1836 0.680618 TGCAGGGCAAAGTTCCATTG 59.319 50.000 0.00 0.0 34.76 2.82 F
1932 2127 1.409381 GGGAGGCCAAGATCCAAGAAG 60.409 57.143 5.01 0.0 37.33 2.85 F
3467 11836 0.249120 CCTTGCAGGTGACATACGGA 59.751 55.000 0.00 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1627 0.801872 CACGTCCGATGCCAATTCAA 59.198 50.000 0.00 0.00 0.00 2.69 R
1611 1757 1.144093 AGGTGGAACGGGTCAAATCAA 59.856 47.619 0.00 0.00 38.12 2.57 R
2788 3076 1.726853 ATTGTCTAGCGAGCACAACC 58.273 50.000 11.73 0.00 32.96 3.77 R
3043 3347 3.878778 AGTTAATGTCATGACCCTGCTC 58.121 45.455 22.85 9.18 0.00 4.26 R
3922 12323 1.332195 GAGCCTTTTCAGCCCAGTTT 58.668 50.000 0.00 0.00 0.00 2.66 R
5019 13442 0.107643 TGGCGTGTCAGAAACATGGA 59.892 50.000 0.00 0.00 43.85 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.479884 CCCCCAGAAAATCTAGATATTCCAG 58.520 44.000 5.46 0.00 0.00 3.86
106 107 3.211045 CCCGGTCAACAAAAGAAGAAGA 58.789 45.455 0.00 0.00 0.00 2.87
153 192 0.251253 ACTTCGAAGACCTCCGACCT 60.251 55.000 31.08 1.77 34.32 3.85
154 193 1.004044 ACTTCGAAGACCTCCGACCTA 59.996 52.381 31.08 0.00 34.32 3.08
155 194 1.401199 CTTCGAAGACCTCCGACCTAC 59.599 57.143 20.74 0.00 34.32 3.18
156 195 0.617413 TCGAAGACCTCCGACCTACT 59.383 55.000 0.00 0.00 0.00 2.57
157 196 1.015868 CGAAGACCTCCGACCTACTC 58.984 60.000 0.00 0.00 0.00 2.59
158 197 1.391577 GAAGACCTCCGACCTACTCC 58.608 60.000 0.00 0.00 0.00 3.85
159 198 0.033306 AAGACCTCCGACCTACTCCC 60.033 60.000 0.00 0.00 0.00 4.30
160 199 0.920271 AGACCTCCGACCTACTCCCT 60.920 60.000 0.00 0.00 0.00 4.20
161 200 0.466007 GACCTCCGACCTACTCCCTC 60.466 65.000 0.00 0.00 0.00 4.30
162 201 1.152715 CCTCCGACCTACTCCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
163 202 1.526455 CTCCGACCTACTCCCTCCG 60.526 68.421 0.00 0.00 0.00 4.63
164 203 2.268167 CTCCGACCTACTCCCTCCGT 62.268 65.000 0.00 0.00 0.00 4.69
165 204 1.823041 CCGACCTACTCCCTCCGTC 60.823 68.421 0.00 0.00 0.00 4.79
166 205 1.823041 CGACCTACTCCCTCCGTCC 60.823 68.421 0.00 0.00 0.00 4.79
167 206 1.455402 GACCTACTCCCTCCGTCCC 60.455 68.421 0.00 0.00 0.00 4.46
168 207 2.220786 GACCTACTCCCTCCGTCCCA 62.221 65.000 0.00 0.00 0.00 4.37
169 208 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
170 209 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
171 210 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
172 211 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
173 212 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
174 213 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
175 214 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
176 215 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
177 216 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
178 217 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
179 218 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
180 219 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
181 220 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
182 221 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
183 222 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
184 223 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
185 224 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
230 269 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
231 270 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
232 271 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
233 272 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
234 273 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
235 274 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
266 305 0.605589 CGAAAGTGAGAGGGAGCACT 59.394 55.000 0.00 0.00 46.59 4.40
269 308 3.464878 AGTGAGAGGGAGCACTTGA 57.535 52.632 0.00 0.00 42.33 3.02
285 324 4.636249 CACTTGAGCTAGGTCTTGAGTTT 58.364 43.478 21.80 1.81 0.00 2.66
329 368 8.496751 AGAAAGAAAAACTAGAATTACGACTGC 58.503 33.333 0.00 0.00 0.00 4.40
371 410 8.652290 GGATATATGACCTCTTCCTTGTTTAGT 58.348 37.037 0.00 0.00 0.00 2.24
393 434 1.666888 GCAACGGAAAGGCTCATTGTG 60.667 52.381 0.00 0.00 0.00 3.33
475 532 8.257306 ACCAACAACAAAGACTATCAAATTTGT 58.743 29.630 17.47 8.05 45.21 2.83
551 608 2.549329 CCGTTTTGTACCGCTAAACCTT 59.451 45.455 0.00 0.00 38.82 3.50
568 625 2.625973 CTTGTTGCACTTTGGCGGCA 62.626 55.000 7.97 7.97 36.28 5.69
606 663 1.002624 CTCAGTTTAAGGCCGGGCA 60.003 57.895 31.59 7.51 0.00 5.36
607 664 0.608035 CTCAGTTTAAGGCCGGGCAA 60.608 55.000 31.59 14.22 0.00 4.52
608 665 0.608035 TCAGTTTAAGGCCGGGCAAG 60.608 55.000 31.59 11.02 0.00 4.01
609 666 1.977009 AGTTTAAGGCCGGGCAAGC 60.977 57.895 31.59 18.12 0.00 4.01
610 667 3.059386 TTTAAGGCCGGGCAAGCG 61.059 61.111 31.59 0.00 0.00 4.68
652 709 6.655003 ACATCATACAAAACAACCCAGACTAG 59.345 38.462 0.00 0.00 0.00 2.57
713 770 6.713450 AGTGTGGTAGACCGAAAATTGTAATT 59.287 34.615 0.00 0.00 39.43 1.40
793 850 5.428457 TGGGACATGTCAGTGGAATAATAGT 59.572 40.000 26.47 0.00 0.00 2.12
795 852 7.155328 GGGACATGTCAGTGGAATAATAGTAG 58.845 42.308 26.47 0.00 0.00 2.57
844 902 1.024271 TGTTTTCTGGTGTGCAGCTC 58.976 50.000 0.00 0.00 0.00 4.09
856 914 4.058124 GTGTGCAGCTCGGAATATGATTA 58.942 43.478 0.00 0.00 0.00 1.75
857 915 4.692625 GTGTGCAGCTCGGAATATGATTAT 59.307 41.667 0.00 0.00 0.00 1.28
900 958 9.669353 CAAATATGACCATGTAAGTAAATCTGC 57.331 33.333 0.00 0.00 0.00 4.26
991 1058 4.821805 TGACCTTGATTCTTGACCAAGTTC 59.178 41.667 9.31 8.45 39.38 3.01
1032 1099 3.752339 GGGAAAGCCAAGCCGCTG 61.752 66.667 0.00 0.00 39.64 5.18
1053 1120 0.821517 AGTTCACGCCGACATGGATA 59.178 50.000 0.00 0.00 42.00 2.59
1089 1156 3.505680 GCTCCGTCATAGTCATCATCTCT 59.494 47.826 0.00 0.00 0.00 3.10
1490 1611 1.486211 CCTCCTCCGACCAATACTGT 58.514 55.000 0.00 0.00 0.00 3.55
1493 1614 2.099921 CTCCTCCGACCAATACTGTCTG 59.900 54.545 0.00 0.00 0.00 3.51
1505 1626 5.869888 CCAATACTGTCTGAAGAAGGTACAC 59.130 44.000 0.00 0.00 0.00 2.90
1506 1627 6.295349 CCAATACTGTCTGAAGAAGGTACACT 60.295 42.308 0.00 0.00 0.00 3.55
1518 1652 4.702131 AGAAGGTACACTTGAATTGGCATC 59.298 41.667 0.00 0.00 40.21 3.91
1526 1660 0.036858 TGAATTGGCATCGGACGTGA 60.037 50.000 0.00 0.00 0.00 4.35
1535 1669 3.427503 GGCATCGGACGTGATTGATTTTT 60.428 43.478 0.00 0.00 0.00 1.94
1578 1724 5.048013 ACTTTTCCAAAAATCTGGTCGATCC 60.048 40.000 0.00 0.00 37.74 3.36
1583 1729 5.480073 TCCAAAAATCTGGTCGATCCAAAAT 59.520 36.000 7.90 3.18 46.59 1.82
1585 1731 6.650390 CCAAAAATCTGGTCGATCCAAAATTT 59.350 34.615 14.44 14.44 46.59 1.82
1635 1781 4.225492 TGATTTGACCCGTTCCACCTTATA 59.775 41.667 0.00 0.00 0.00 0.98
1681 1836 0.680618 TGCAGGGCAAAGTTCCATTG 59.319 50.000 0.00 0.00 34.76 2.82
1732 1887 5.065988 ACACATATTTATCTTCGTGTTGGCC 59.934 40.000 0.00 0.00 34.06 5.36
1787 1942 5.755409 TCTTCTAGGAATTGCACAGGTAA 57.245 39.130 0.00 0.00 0.00 2.85
1801 1959 8.961294 TTGCACAGGTAAGTACTAACTAAAAA 57.039 30.769 0.00 0.00 33.75 1.94
1820 1978 9.740710 ACTAAAAATCCAACTAGCTAGATGTTT 57.259 29.630 27.45 20.57 32.35 2.83
1823 1981 8.409358 AAAATCCAACTAGCTAGATGTTTGTT 57.591 30.769 27.45 12.56 0.00 2.83
1824 1982 6.992063 ATCCAACTAGCTAGATGTTTGTTG 57.008 37.500 27.45 17.95 40.24 3.33
1825 1983 5.865085 TCCAACTAGCTAGATGTTTGTTGT 58.135 37.500 27.45 0.00 39.47 3.32
1826 1984 6.296026 TCCAACTAGCTAGATGTTTGTTGTT 58.704 36.000 27.45 4.86 39.47 2.83
1827 1985 7.446769 TCCAACTAGCTAGATGTTTGTTGTTA 58.553 34.615 27.45 7.62 39.47 2.41
1828 1986 7.934665 TCCAACTAGCTAGATGTTTGTTGTTAA 59.065 33.333 27.45 5.48 39.47 2.01
1829 1987 8.730680 CCAACTAGCTAGATGTTTGTTGTTAAT 58.269 33.333 27.45 0.00 39.47 1.40
1832 1990 9.284968 ACTAGCTAGATGTTTGTTGTTAATTGT 57.715 29.630 27.45 0.00 0.00 2.71
1834 1992 8.801715 AGCTAGATGTTTGTTGTTAATTGTTG 57.198 30.769 0.00 0.00 0.00 3.33
1835 1993 8.413229 AGCTAGATGTTTGTTGTTAATTGTTGT 58.587 29.630 0.00 0.00 0.00 3.32
1836 1994 8.690840 GCTAGATGTTTGTTGTTAATTGTTGTC 58.309 33.333 0.00 0.00 0.00 3.18
1837 1995 9.180678 CTAGATGTTTGTTGTTAATTGTTGTCC 57.819 33.333 0.00 0.00 0.00 4.02
1838 1996 7.551585 AGATGTTTGTTGTTAATTGTTGTCCA 58.448 30.769 0.00 0.00 0.00 4.02
1857 2048 7.876936 TGTCCAGACGAGTAATTAGTCTATT 57.123 36.000 16.43 2.96 42.65 1.73
1858 2049 7.704271 TGTCCAGACGAGTAATTAGTCTATTG 58.296 38.462 16.43 11.31 42.65 1.90
1862 2053 7.858382 CCAGACGAGTAATTAGTCTATTGTGAG 59.142 40.741 16.43 3.23 42.65 3.51
1932 2127 1.409381 GGGAGGCCAAGATCCAAGAAG 60.409 57.143 5.01 0.00 37.33 2.85
1957 2152 3.098774 TGGTGGTGGTATGATGCAAAT 57.901 42.857 0.00 0.00 0.00 2.32
1973 2175 9.905713 ATGATGCAAATACTTTCCTAGTTTAGA 57.094 29.630 0.00 0.00 38.33 2.10
1996 2198 8.827177 AGATAACGATGACTTCACAAGTTTTA 57.173 30.769 0.00 0.00 43.03 1.52
2035 2244 7.302524 TGTGTTATTTTTCCTGCTTACGAATC 58.697 34.615 0.00 0.00 0.00 2.52
2040 2250 3.695830 TTCCTGCTTACGAATCTTGGT 57.304 42.857 0.00 0.00 0.00 3.67
2077 2291 5.393352 GCACCTCAAATGATCAAGCATGTTA 60.393 40.000 0.00 0.00 0.00 2.41
2078 2292 6.263344 CACCTCAAATGATCAAGCATGTTAG 58.737 40.000 0.00 0.00 0.00 2.34
2206 2429 5.467035 TTGCATTTCTTCTTTACCTTGGG 57.533 39.130 0.00 0.00 0.00 4.12
2234 2457 6.042093 TGGGGTATAAGACAACTCATCATCTC 59.958 42.308 0.00 0.00 0.00 2.75
2235 2458 6.268847 GGGGTATAAGACAACTCATCATCTCT 59.731 42.308 0.00 0.00 0.00 3.10
2236 2459 7.375053 GGGTATAAGACAACTCATCATCTCTC 58.625 42.308 0.00 0.00 0.00 3.20
2274 2497 6.884295 TCTTCAAACAATTCTATGGATCGGTT 59.116 34.615 0.00 0.00 0.00 4.44
2323 2546 7.770433 TGAGACTTGGTTTCATCATGGTAATAG 59.230 37.037 0.00 0.00 0.00 1.73
2326 2549 7.633789 ACTTGGTTTCATCATGGTAATAGACT 58.366 34.615 0.00 0.00 0.00 3.24
2359 2582 9.899226 TTCATCGATATATAGAAGTCACTTGTG 57.101 33.333 0.00 0.00 0.00 3.33
2478 2711 8.318412 GGGGACACCAAAATTCAACTTTTATAT 58.682 33.333 0.00 0.00 39.85 0.86
2594 2829 6.913170 TCTTTCTAAATCATTTGCAGTGTCC 58.087 36.000 0.00 0.00 0.00 4.02
2798 3088 6.582437 AAAACTTTATTTTGGTTGTGCTCG 57.418 33.333 0.00 0.00 0.00 5.03
2817 3114 6.575201 GTGCTCGCTAGACAATATTTTTATGC 59.425 38.462 0.00 0.00 0.00 3.14
3159 3465 0.392998 AGGTTGCCCAGAAGCATACG 60.393 55.000 0.00 0.00 43.64 3.06
3214 11567 5.721480 TCAGATGACTTCTTCTGGTTCCATA 59.279 40.000 17.57 0.01 43.95 2.74
3252 11605 2.094026 TCTGTTGATCCACATCGTCCTG 60.094 50.000 0.00 0.00 0.00 3.86
3261 11614 3.314080 TCCACATCGTCCTGTTTCAAAAC 59.686 43.478 0.00 0.00 39.33 2.43
3467 11836 0.249120 CCTTGCAGGTGACATACGGA 59.751 55.000 0.00 0.00 0.00 4.69
3488 11857 5.279106 CGGATTTAAATCATGCATCATGGGT 60.279 40.000 25.55 0.00 41.66 4.51
3675 12067 7.550551 TCTCTCATGTGAGTCCAATTCATAAAC 59.449 37.037 20.99 0.00 42.60 2.01
3782 12178 9.683069 CAAAGCTTGTTTTCACAAATAGATACT 57.317 29.630 0.00 0.00 42.53 2.12
3793 12189 9.787435 TTCACAAATAGATACTGTTGTAAAGGT 57.213 29.630 0.00 0.00 33.04 3.50
3922 12323 3.181445 ACAATGTGACTGAAGGCCTTGTA 60.181 43.478 26.25 10.97 0.00 2.41
3964 12365 2.479275 GAGACGTACAAGAAGCCCAAAC 59.521 50.000 0.00 0.00 0.00 2.93
4003 12416 0.179004 TTGACGAGGCAAATGGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
4026 12439 6.208644 GTGCAGTTCAAATGACAAATACACT 58.791 36.000 0.00 0.00 0.00 3.55
4298 12712 8.617809 CAAATACACGCCCTATTAACTAATGTT 58.382 33.333 0.00 0.00 39.98 2.71
4306 12720 7.601130 CGCCCTATTAACTAATGTTGCATAGTA 59.399 37.037 0.00 0.00 37.59 1.82
4360 12781 6.282167 TGAATGATGCACTTGAACAAACAAT 58.718 32.000 0.00 0.00 0.00 2.71
4491 12912 5.104982 TGGCTTTCTATATTTTGGCCTTTGG 60.105 40.000 3.32 0.00 38.93 3.28
4500 12921 1.650242 TTGGCCTTTGGTCTCCCACA 61.650 55.000 3.32 0.00 41.67 4.17
4521 12942 8.321353 CCCACATGTACTTGTATATATGATGGT 58.679 37.037 13.51 0.00 31.08 3.55
4592 13014 4.591072 GTGCTATGGTTAGATCTTCCTCCT 59.409 45.833 0.00 0.00 0.00 3.69
4594 13016 4.020662 GCTATGGTTAGATCTTCCTCCTGG 60.021 50.000 0.00 0.00 0.00 4.45
4606 13028 1.734477 CTCCTGGCGACACAACTCG 60.734 63.158 0.00 0.00 35.60 4.18
4615 13037 3.179830 GCGACACAACTCGTCTTATGAT 58.820 45.455 0.00 0.00 35.99 2.45
4649 13071 4.940654 GGTCTGATTTTCCTCTTTCTCCTG 59.059 45.833 0.00 0.00 0.00 3.86
4654 13076 2.847327 TTCCTCTTTCTCCTGCTGTG 57.153 50.000 0.00 0.00 0.00 3.66
4672 13094 5.645067 TGCTGTGTTCATCTTATTTCTCCAG 59.355 40.000 0.00 0.00 0.00 3.86
4709 13131 4.503643 CCAAATTGGTTTTGCTGTCCAGAT 60.504 41.667 3.34 0.00 42.85 2.90
4712 13134 1.202758 TGGTTTTGCTGTCCAGATCGT 60.203 47.619 0.00 0.00 0.00 3.73
4713 13135 1.464997 GGTTTTGCTGTCCAGATCGTC 59.535 52.381 0.00 0.00 0.00 4.20
4718 13140 3.057969 TGCTGTCCAGATCGTCAAATT 57.942 42.857 0.00 0.00 0.00 1.82
4722 13144 2.028476 TGTCCAGATCGTCAAATTCCGT 60.028 45.455 0.00 0.00 0.00 4.69
4725 13147 2.476185 CCAGATCGTCAAATTCCGTTGC 60.476 50.000 0.00 0.00 0.00 4.17
4729 13151 1.579429 GTCAAATTCCGTTGCCGCT 59.421 52.632 0.00 0.00 0.00 5.52
4753 13176 1.448922 TTTTCCTGCCGAAACCACCG 61.449 55.000 0.00 0.00 40.23 4.94
4754 13177 2.326773 TTTCCTGCCGAAACCACCGA 62.327 55.000 0.00 0.00 35.49 4.69
4768 13191 0.031585 CACCGACTCGTTGTTCCTGA 59.968 55.000 0.00 0.00 0.00 3.86
4770 13193 0.666577 CCGACTCGTTGTTCCTGACC 60.667 60.000 0.00 0.00 0.00 4.02
4771 13194 1.002250 CGACTCGTTGTTCCTGACCG 61.002 60.000 0.00 0.00 0.00 4.79
4776 13199 1.227853 GTTGTTCCTGACCGCCTGT 60.228 57.895 0.00 0.00 0.00 4.00
4789 13212 2.888111 CCTGTAGCTGCTCTGCGA 59.112 61.111 4.91 0.00 38.13 5.10
4791 13214 1.518133 CTGTAGCTGCTCTGCGACC 60.518 63.158 4.91 0.00 37.69 4.79
4805 13228 2.432628 GACCGTTGCTCCCTCACG 60.433 66.667 0.00 0.00 0.00 4.35
4828 13251 2.358737 CCGTCACCACCTCCAAGC 60.359 66.667 0.00 0.00 0.00 4.01
4836 13259 1.987855 CACCTCCAAGCCCGGTAGA 60.988 63.158 0.00 0.00 0.00 2.59
4838 13261 2.494918 CTCCAAGCCCGGTAGACG 59.505 66.667 0.00 0.00 43.80 4.18
4841 13264 4.077184 CAAGCCCGGTAGACGCCA 62.077 66.667 0.00 0.00 42.52 5.69
4843 13266 3.600898 AAGCCCGGTAGACGCCAAC 62.601 63.158 0.00 0.00 42.52 3.77
4858 13281 1.272147 GCCAACATCTCCAGGTTTCCT 60.272 52.381 0.00 0.00 0.00 3.36
4861 13284 0.905357 ACATCTCCAGGTTTCCTCCG 59.095 55.000 0.00 0.00 0.00 4.63
4863 13286 1.627297 ATCTCCAGGTTTCCTCCGGC 61.627 60.000 0.00 0.00 0.00 6.13
4933 13356 6.380274 AGCTTTTGTCATTCTCATCATCCAAT 59.620 34.615 0.00 0.00 0.00 3.16
4936 13359 6.459670 TTGTCATTCTCATCATCCAATTGG 57.540 37.500 19.08 19.08 0.00 3.16
4937 13360 5.512298 TGTCATTCTCATCATCCAATTGGT 58.488 37.500 23.76 8.93 36.34 3.67
4938 13361 5.591472 TGTCATTCTCATCATCCAATTGGTC 59.409 40.000 23.76 0.00 36.34 4.02
4939 13362 5.009410 GTCATTCTCATCATCCAATTGGTCC 59.991 44.000 23.76 0.00 36.34 4.46
4940 13363 4.868172 TTCTCATCATCCAATTGGTCCT 57.132 40.909 23.76 7.67 36.34 3.85
4941 13364 4.428294 TCTCATCATCCAATTGGTCCTC 57.572 45.455 23.76 0.00 36.34 3.71
4942 13365 3.137176 TCTCATCATCCAATTGGTCCTCC 59.863 47.826 23.76 0.00 36.34 4.30
4943 13366 2.175499 TCATCATCCAATTGGTCCTCCC 59.825 50.000 23.76 0.00 36.34 4.30
4944 13367 0.926293 TCATCCAATTGGTCCTCCCC 59.074 55.000 23.76 0.00 36.34 4.81
4945 13368 0.630673 CATCCAATTGGTCCTCCCCA 59.369 55.000 23.76 2.38 36.34 4.96
4946 13369 1.218704 CATCCAATTGGTCCTCCCCAT 59.781 52.381 23.76 4.83 33.60 4.00
4947 13370 1.392407 TCCAATTGGTCCTCCCCATT 58.608 50.000 23.76 0.00 33.60 3.16
4948 13371 1.287739 TCCAATTGGTCCTCCCCATTC 59.712 52.381 23.76 0.00 33.60 2.67
4949 13372 1.288932 CCAATTGGTCCTCCCCATTCT 59.711 52.381 16.90 0.00 33.60 2.40
4950 13373 2.659428 CAATTGGTCCTCCCCATTCTC 58.341 52.381 0.00 0.00 33.60 2.87
4951 13374 1.985622 ATTGGTCCTCCCCATTCTCA 58.014 50.000 0.00 0.00 33.60 3.27
4952 13375 1.289160 TTGGTCCTCCCCATTCTCAG 58.711 55.000 0.00 0.00 33.60 3.35
4953 13376 0.119155 TGGTCCTCCCCATTCTCAGT 59.881 55.000 0.00 0.00 0.00 3.41
4954 13377 1.290134 GGTCCTCCCCATTCTCAGTT 58.710 55.000 0.00 0.00 0.00 3.16
4955 13378 1.065126 GGTCCTCCCCATTCTCAGTTG 60.065 57.143 0.00 0.00 0.00 3.16
4956 13379 0.620556 TCCTCCCCATTCTCAGTTGC 59.379 55.000 0.00 0.00 0.00 4.17
4957 13380 0.622665 CCTCCCCATTCTCAGTTGCT 59.377 55.000 0.00 0.00 0.00 3.91
4958 13381 1.407989 CCTCCCCATTCTCAGTTGCTC 60.408 57.143 0.00 0.00 0.00 4.26
4959 13382 0.250234 TCCCCATTCTCAGTTGCTCG 59.750 55.000 0.00 0.00 0.00 5.03
4960 13383 0.250234 CCCCATTCTCAGTTGCTCGA 59.750 55.000 0.00 0.00 0.00 4.04
4961 13384 1.363744 CCCATTCTCAGTTGCTCGAC 58.636 55.000 0.00 0.00 0.00 4.20
4962 13385 1.066573 CCCATTCTCAGTTGCTCGACT 60.067 52.381 0.00 0.00 0.00 4.18
4963 13386 2.613977 CCCATTCTCAGTTGCTCGACTT 60.614 50.000 0.00 0.00 0.00 3.01
4964 13387 2.670414 CCATTCTCAGTTGCTCGACTTC 59.330 50.000 0.00 0.00 0.00 3.01
4965 13388 3.583806 CATTCTCAGTTGCTCGACTTCT 58.416 45.455 0.00 0.00 0.00 2.85
4966 13389 4.380973 CCATTCTCAGTTGCTCGACTTCTA 60.381 45.833 0.00 0.00 0.00 2.10
4967 13390 3.833545 TCTCAGTTGCTCGACTTCTAC 57.166 47.619 0.00 0.00 0.00 2.59
4968 13391 3.146847 TCTCAGTTGCTCGACTTCTACA 58.853 45.455 0.00 0.00 0.00 2.74
4969 13392 3.058155 TCTCAGTTGCTCGACTTCTACAC 60.058 47.826 0.00 0.00 0.00 2.90
4970 13393 2.030185 TCAGTTGCTCGACTTCTACACC 60.030 50.000 0.00 0.00 0.00 4.16
4971 13394 1.272769 AGTTGCTCGACTTCTACACCC 59.727 52.381 0.00 0.00 0.00 4.61
4972 13395 1.272769 GTTGCTCGACTTCTACACCCT 59.727 52.381 0.00 0.00 0.00 4.34
4973 13396 2.490903 GTTGCTCGACTTCTACACCCTA 59.509 50.000 0.00 0.00 0.00 3.53
4974 13397 2.089980 TGCTCGACTTCTACACCCTAC 58.910 52.381 0.00 0.00 0.00 3.18
4975 13398 1.404748 GCTCGACTTCTACACCCTACC 59.595 57.143 0.00 0.00 0.00 3.18
4976 13399 2.944991 GCTCGACTTCTACACCCTACCT 60.945 54.545 0.00 0.00 0.00 3.08
4977 13400 2.944349 CTCGACTTCTACACCCTACCTC 59.056 54.545 0.00 0.00 0.00 3.85
4978 13401 2.575279 TCGACTTCTACACCCTACCTCT 59.425 50.000 0.00 0.00 0.00 3.69
4979 13402 3.009916 TCGACTTCTACACCCTACCTCTT 59.990 47.826 0.00 0.00 0.00 2.85
4980 13403 4.225942 TCGACTTCTACACCCTACCTCTTA 59.774 45.833 0.00 0.00 0.00 2.10
4981 13404 4.946157 CGACTTCTACACCCTACCTCTTAA 59.054 45.833 0.00 0.00 0.00 1.85
4982 13405 5.593502 CGACTTCTACACCCTACCTCTTAAT 59.406 44.000 0.00 0.00 0.00 1.40
4983 13406 6.096564 CGACTTCTACACCCTACCTCTTAATT 59.903 42.308 0.00 0.00 0.00 1.40
4984 13407 7.284034 CGACTTCTACACCCTACCTCTTAATTA 59.716 40.741 0.00 0.00 0.00 1.40
4985 13408 8.536340 ACTTCTACACCCTACCTCTTAATTAG 57.464 38.462 0.00 0.00 0.00 1.73
4986 13409 6.973460 TCTACACCCTACCTCTTAATTAGC 57.027 41.667 0.00 0.00 0.00 3.09
4987 13410 6.680540 TCTACACCCTACCTCTTAATTAGCT 58.319 40.000 0.00 0.00 0.00 3.32
4988 13411 7.130775 TCTACACCCTACCTCTTAATTAGCTT 58.869 38.462 0.00 0.00 0.00 3.74
4989 13412 6.236558 ACACCCTACCTCTTAATTAGCTTC 57.763 41.667 0.00 0.00 0.00 3.86
4990 13413 5.724854 ACACCCTACCTCTTAATTAGCTTCA 59.275 40.000 0.00 0.00 0.00 3.02
4991 13414 6.387220 ACACCCTACCTCTTAATTAGCTTCAT 59.613 38.462 0.00 0.00 0.00 2.57
4992 13415 6.931840 CACCCTACCTCTTAATTAGCTTCATC 59.068 42.308 0.00 0.00 0.00 2.92
4993 13416 6.043358 ACCCTACCTCTTAATTAGCTTCATCC 59.957 42.308 0.00 0.00 0.00 3.51
4994 13417 6.271159 CCCTACCTCTTAATTAGCTTCATCCT 59.729 42.308 0.00 0.00 0.00 3.24
4995 13418 7.382898 CCTACCTCTTAATTAGCTTCATCCTC 58.617 42.308 0.00 0.00 0.00 3.71
4996 13419 6.181206 ACCTCTTAATTAGCTTCATCCTCC 57.819 41.667 0.00 0.00 0.00 4.30
4997 13420 5.667626 ACCTCTTAATTAGCTTCATCCTCCA 59.332 40.000 0.00 0.00 0.00 3.86
4998 13421 6.158695 ACCTCTTAATTAGCTTCATCCTCCAA 59.841 38.462 0.00 0.00 0.00 3.53
4999 13422 6.709846 CCTCTTAATTAGCTTCATCCTCCAAG 59.290 42.308 0.00 0.00 0.00 3.61
5000 13423 6.058183 TCTTAATTAGCTTCATCCTCCAAGC 58.942 40.000 0.00 0.00 44.63 4.01
5001 13424 2.717639 TTAGCTTCATCCTCCAAGCC 57.282 50.000 0.00 0.00 45.28 4.35
5002 13425 0.465705 TAGCTTCATCCTCCAAGCCG 59.534 55.000 0.00 0.00 45.28 5.52
5003 13426 1.821332 GCTTCATCCTCCAAGCCGG 60.821 63.158 0.00 0.00 39.36 6.13
5004 13427 1.821332 CTTCATCCTCCAAGCCGGC 60.821 63.158 21.89 21.89 33.14 6.13
5005 13428 3.344137 TTCATCCTCCAAGCCGGCC 62.344 63.158 26.15 5.07 33.14 6.13
5006 13429 4.113815 CATCCTCCAAGCCGGCCA 62.114 66.667 26.15 3.44 33.14 5.36
5007 13430 4.115199 ATCCTCCAAGCCGGCCAC 62.115 66.667 26.15 0.00 33.14 5.01
5017 13440 4.047125 CCGGCCACCCCACTGAAT 62.047 66.667 2.24 0.00 0.00 2.57
5018 13441 2.438434 CGGCCACCCCACTGAATC 60.438 66.667 2.24 0.00 0.00 2.52
5019 13442 2.971598 CGGCCACCCCACTGAATCT 61.972 63.158 2.24 0.00 0.00 2.40
5020 13443 1.077429 GGCCACCCCACTGAATCTC 60.077 63.158 0.00 0.00 0.00 2.75
5021 13444 1.077429 GCCACCCCACTGAATCTCC 60.077 63.158 0.00 0.00 0.00 3.71
5022 13445 1.852157 GCCACCCCACTGAATCTCCA 61.852 60.000 0.00 0.00 0.00 3.86
5023 13446 0.921896 CCACCCCACTGAATCTCCAT 59.078 55.000 0.00 0.00 0.00 3.41
5024 13447 1.409241 CCACCCCACTGAATCTCCATG 60.409 57.143 0.00 0.00 0.00 3.66
5025 13448 1.283029 CACCCCACTGAATCTCCATGT 59.717 52.381 0.00 0.00 0.00 3.21
5026 13449 1.995542 ACCCCACTGAATCTCCATGTT 59.004 47.619 0.00 0.00 0.00 2.71
5027 13450 2.379907 ACCCCACTGAATCTCCATGTTT 59.620 45.455 0.00 0.00 0.00 2.83
5028 13451 3.019564 CCCCACTGAATCTCCATGTTTC 58.980 50.000 0.00 0.00 0.00 2.78
5029 13452 3.308688 CCCCACTGAATCTCCATGTTTCT 60.309 47.826 0.00 0.00 0.00 2.52
5030 13453 3.693085 CCCACTGAATCTCCATGTTTCTG 59.307 47.826 0.00 0.00 32.84 3.02
5031 13454 4.566278 CCCACTGAATCTCCATGTTTCTGA 60.566 45.833 0.00 0.00 31.78 3.27
5032 13455 4.394300 CCACTGAATCTCCATGTTTCTGAC 59.606 45.833 0.00 0.00 31.78 3.51
5033 13456 4.999311 CACTGAATCTCCATGTTTCTGACA 59.001 41.667 0.00 0.00 43.71 3.58
5034 13457 4.999950 ACTGAATCTCCATGTTTCTGACAC 59.000 41.667 0.00 0.00 42.04 3.67
5035 13458 3.996363 TGAATCTCCATGTTTCTGACACG 59.004 43.478 0.00 0.00 42.04 4.49
5036 13459 1.795768 TCTCCATGTTTCTGACACGC 58.204 50.000 0.00 0.00 42.04 5.34
5037 13460 0.798776 CTCCATGTTTCTGACACGCC 59.201 55.000 0.00 0.00 42.04 5.68
5038 13461 0.107643 TCCATGTTTCTGACACGCCA 59.892 50.000 0.00 0.00 42.04 5.69
5039 13462 0.238289 CCATGTTTCTGACACGCCAC 59.762 55.000 0.00 0.00 42.04 5.01
5040 13463 0.943673 CATGTTTCTGACACGCCACA 59.056 50.000 0.00 0.00 42.04 4.17
5041 13464 1.536766 CATGTTTCTGACACGCCACAT 59.463 47.619 0.00 0.00 42.04 3.21
5042 13465 1.225855 TGTTTCTGACACGCCACATC 58.774 50.000 0.00 0.00 32.00 3.06
5043 13466 1.225855 GTTTCTGACACGCCACATCA 58.774 50.000 0.00 0.00 0.00 3.07
5044 13467 1.806542 GTTTCTGACACGCCACATCAT 59.193 47.619 0.00 0.00 0.00 2.45
5045 13468 1.441738 TTCTGACACGCCACATCATG 58.558 50.000 0.00 0.00 0.00 3.07
5046 13469 0.321346 TCTGACACGCCACATCATGT 59.679 50.000 0.00 0.00 0.00 3.21
5047 13470 0.723414 CTGACACGCCACATCATGTC 59.277 55.000 0.00 0.00 41.51 3.06
5048 13471 0.034616 TGACACGCCACATCATGTCA 59.965 50.000 1.91 1.91 46.92 3.58
5049 13472 1.155889 GACACGCCACATCATGTCAA 58.844 50.000 0.00 0.00 40.95 3.18
5050 13473 1.739466 GACACGCCACATCATGTCAAT 59.261 47.619 0.00 0.00 40.95 2.57
5051 13474 1.739466 ACACGCCACATCATGTCAATC 59.261 47.619 0.00 0.00 0.00 2.67
5052 13475 1.738908 CACGCCACATCATGTCAATCA 59.261 47.619 0.00 0.00 0.00 2.57
5053 13476 2.356695 CACGCCACATCATGTCAATCAT 59.643 45.455 0.00 0.00 37.22 2.45
5067 13490 7.828508 ATGTCAATCATGGTTACTTATGCAT 57.171 32.000 3.79 3.79 35.19 3.96
5068 13491 7.030075 TGTCAATCATGGTTACTTATGCATG 57.970 36.000 10.16 0.00 0.00 4.06
5069 13492 6.602803 TGTCAATCATGGTTACTTATGCATGT 59.397 34.615 10.16 1.67 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.044871 ACTGGAATATCTAGATTTTCTGGGGG 59.955 42.308 25.57 16.72 31.99 5.40
26 27 3.928754 AGGCACCACTGGAATATCTAGA 58.071 45.455 0.71 0.00 0.00 2.43
39 40 3.211045 TGTCTGAAAGTAAAGGCACCAC 58.789 45.455 0.00 0.00 33.76 4.16
153 192 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
154 193 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
155 194 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
156 195 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
157 196 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
158 197 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
159 198 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
160 199 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
161 200 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
205 244 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
206 245 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
207 246 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
208 247 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
209 248 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
211 250 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
212 251 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
213 252 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
214 253 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
215 254 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
216 255 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
217 256 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
218 257 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
219 258 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
220 259 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
221 260 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
222 261 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
223 262 0.614134 ACAAGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
224 263 0.531200 CACAAGTACTCCCTCCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
225 264 1.067776 CACACAAGTACTCCCTCCGTC 60.068 57.143 0.00 0.00 0.00 4.79
226 265 0.966920 CACACAAGTACTCCCTCCGT 59.033 55.000 0.00 0.00 0.00 4.69
227 266 1.067776 GTCACACAAGTACTCCCTCCG 60.068 57.143 0.00 0.00 0.00 4.63
228 267 1.067776 CGTCACACAAGTACTCCCTCC 60.068 57.143 0.00 0.00 0.00 4.30
229 268 1.884579 TCGTCACACAAGTACTCCCTC 59.115 52.381 0.00 0.00 0.00 4.30
230 269 1.991121 TCGTCACACAAGTACTCCCT 58.009 50.000 0.00 0.00 0.00 4.20
231 270 2.806608 TTCGTCACACAAGTACTCCC 57.193 50.000 0.00 0.00 0.00 4.30
232 271 3.489785 CACTTTCGTCACACAAGTACTCC 59.510 47.826 0.00 0.00 0.00 3.85
233 272 4.357142 TCACTTTCGTCACACAAGTACTC 58.643 43.478 0.00 0.00 0.00 2.59
234 273 4.097437 TCTCACTTTCGTCACACAAGTACT 59.903 41.667 0.00 0.00 0.00 2.73
235 274 4.357142 TCTCACTTTCGTCACACAAGTAC 58.643 43.478 0.00 0.00 0.00 2.73
266 305 5.552870 AAGAAACTCAAGACCTAGCTCAA 57.447 39.130 0.00 0.00 0.00 3.02
269 308 7.993758 AGTTTTAAAGAAACTCAAGACCTAGCT 59.006 33.333 0.00 0.00 35.76 3.32
371 410 0.539438 AATGAGCCTTTCCGTTGCCA 60.539 50.000 0.00 0.00 0.00 4.92
393 434 3.381045 GCTTTTGGTAACTTTGCTGTCC 58.619 45.455 0.00 0.00 37.61 4.02
475 532 5.872617 CGTATGATGTTCCCAACTGTCTAAA 59.127 40.000 0.00 0.00 0.00 1.85
551 608 3.136345 CTGCCGCCAAAGTGCAACA 62.136 57.895 0.00 0.00 41.43 3.33
568 625 2.110011 AGGCCCTTACAAATCCAACACT 59.890 45.455 0.00 0.00 0.00 3.55
652 709 7.474398 ACTGGAAACTCGTTAAAAACTAGTC 57.526 36.000 0.00 0.00 36.53 2.59
683 740 5.376854 TTTTCGGTCTACCACACTACTAC 57.623 43.478 0.00 0.00 35.14 2.73
793 850 8.316214 CAACCTGTTACCTTCCAAATACTACTA 58.684 37.037 0.00 0.00 0.00 1.82
795 852 6.938596 ACAACCTGTTACCTTCCAAATACTAC 59.061 38.462 0.00 0.00 0.00 2.73
803 860 4.513406 AGAAACAACCTGTTACCTTCCA 57.487 40.909 0.00 0.00 40.14 3.53
844 902 6.237942 GGCACGATCAGAATAATCATATTCCG 60.238 42.308 5.25 4.85 45.71 4.30
856 914 2.768253 TGACTTGGCACGATCAGAAT 57.232 45.000 0.00 0.00 0.00 2.40
857 915 2.542020 TTGACTTGGCACGATCAGAA 57.458 45.000 0.00 0.00 0.00 3.02
1008 1075 2.078452 CTTGGCTTTCCCTCCTCCA 58.922 57.895 0.00 0.00 0.00 3.86
1032 1099 2.100631 CCATGTCGGCGTGAACTCC 61.101 63.158 11.66 0.00 33.58 3.85
1053 1120 4.057428 GAGCAGACCGACGCCACT 62.057 66.667 0.00 0.00 0.00 4.00
1482 1603 6.692486 AGTGTACCTTCTTCAGACAGTATTG 58.308 40.000 0.00 0.00 0.00 1.90
1490 1611 5.997746 CCAATTCAAGTGTACCTTCTTCAGA 59.002 40.000 0.00 0.00 0.00 3.27
1493 1614 4.518970 TGCCAATTCAAGTGTACCTTCTTC 59.481 41.667 0.00 0.00 0.00 2.87
1505 1626 1.086696 ACGTCCGATGCCAATTCAAG 58.913 50.000 0.00 0.00 0.00 3.02
1506 1627 0.801872 CACGTCCGATGCCAATTCAA 59.198 50.000 0.00 0.00 0.00 2.69
1596 1742 9.631452 GGGTCAAATCAAAGAAGAAGAAAATAG 57.369 33.333 0.00 0.00 0.00 1.73
1599 1745 6.096282 ACGGGTCAAATCAAAGAAGAAGAAAA 59.904 34.615 0.00 0.00 0.00 2.29
1601 1747 5.130350 ACGGGTCAAATCAAAGAAGAAGAA 58.870 37.500 0.00 0.00 0.00 2.52
1602 1748 4.714632 ACGGGTCAAATCAAAGAAGAAGA 58.285 39.130 0.00 0.00 0.00 2.87
1603 1749 5.438761 AACGGGTCAAATCAAAGAAGAAG 57.561 39.130 0.00 0.00 0.00 2.85
1604 1750 4.277423 GGAACGGGTCAAATCAAAGAAGAA 59.723 41.667 0.00 0.00 0.00 2.52
1606 1752 3.568007 TGGAACGGGTCAAATCAAAGAAG 59.432 43.478 0.00 0.00 0.00 2.85
1610 1756 1.957877 GGTGGAACGGGTCAAATCAAA 59.042 47.619 0.00 0.00 38.12 2.69
1611 1757 1.144093 AGGTGGAACGGGTCAAATCAA 59.856 47.619 0.00 0.00 38.12 2.57
1613 1759 1.905637 AAGGTGGAACGGGTCAAATC 58.094 50.000 0.00 0.00 38.12 2.17
1635 1781 6.480320 GGCGTCAAATGAATCACTAGATAAGT 59.520 38.462 0.00 0.00 39.81 2.24
1681 1836 6.260493 ACTGATGAATAGCTTCAGATGAAAGC 59.740 38.462 17.24 0.00 46.38 3.51
1732 1887 3.677121 CACTGAGAAGGAAATGAGTGACG 59.323 47.826 0.00 0.00 34.06 4.35
1801 1959 6.476378 ACAACAAACATCTAGCTAGTTGGAT 58.524 36.000 27.51 17.17 39.18 3.41
1811 1969 9.180678 GGACAACAATTAACAACAAACATCTAG 57.819 33.333 0.00 0.00 0.00 2.43
1813 1971 7.551585 TGGACAACAATTAACAACAAACATCT 58.448 30.769 0.00 0.00 0.00 2.90
1814 1972 7.704472 TCTGGACAACAATTAACAACAAACATC 59.296 33.333 0.00 0.00 0.00 3.06
1820 1978 4.876679 TCGTCTGGACAACAATTAACAACA 59.123 37.500 1.63 0.00 0.00 3.33
1823 1981 4.699637 ACTCGTCTGGACAACAATTAACA 58.300 39.130 1.63 0.00 0.00 2.41
1824 1982 6.774354 TTACTCGTCTGGACAACAATTAAC 57.226 37.500 1.63 0.00 0.00 2.01
1825 1983 7.972832 AATTACTCGTCTGGACAACAATTAA 57.027 32.000 1.63 0.00 0.00 1.40
1826 1984 8.308931 ACTAATTACTCGTCTGGACAACAATTA 58.691 33.333 1.63 4.83 0.00 1.40
1827 1985 7.159372 ACTAATTACTCGTCTGGACAACAATT 58.841 34.615 1.63 4.08 0.00 2.32
1828 1986 6.698380 ACTAATTACTCGTCTGGACAACAAT 58.302 36.000 1.63 0.00 0.00 2.71
1829 1987 6.015688 AGACTAATTACTCGTCTGGACAACAA 60.016 38.462 5.34 0.00 36.70 2.83
1830 1988 5.475909 AGACTAATTACTCGTCTGGACAACA 59.524 40.000 5.34 0.00 36.70 3.33
1831 1989 5.952033 AGACTAATTACTCGTCTGGACAAC 58.048 41.667 5.34 0.00 36.70 3.32
1832 1990 7.876936 ATAGACTAATTACTCGTCTGGACAA 57.123 36.000 13.44 0.00 38.39 3.18
1833 1991 7.338703 ACAATAGACTAATTACTCGTCTGGACA 59.661 37.037 13.44 0.00 38.39 4.02
1834 1992 7.644551 CACAATAGACTAATTACTCGTCTGGAC 59.355 40.741 13.44 0.00 38.39 4.02
1835 1993 7.555195 TCACAATAGACTAATTACTCGTCTGGA 59.445 37.037 13.44 0.00 38.39 3.86
1836 1994 7.704271 TCACAATAGACTAATTACTCGTCTGG 58.296 38.462 13.44 7.54 38.39 3.86
1837 1995 8.399425 ACTCACAATAGACTAATTACTCGTCTG 58.601 37.037 13.44 3.94 38.39 3.51
1838 1996 8.508883 ACTCACAATAGACTAATTACTCGTCT 57.491 34.615 9.90 9.90 40.74 4.18
1932 2127 2.816087 GCATCATACCACCACCATCATC 59.184 50.000 0.00 0.00 0.00 2.92
2018 2227 4.394729 ACCAAGATTCGTAAGCAGGAAAA 58.605 39.130 0.00 0.00 32.64 2.29
2022 2231 2.678336 GGAACCAAGATTCGTAAGCAGG 59.322 50.000 0.00 0.00 37.18 4.85
2035 2244 2.030805 GTGCTGCAAGTTAGGAACCAAG 60.031 50.000 2.77 0.00 35.30 3.61
2040 2250 1.419762 TGAGGTGCTGCAAGTTAGGAA 59.580 47.619 2.77 0.00 35.30 3.36
2162 2376 6.211515 CAATATGCTTTGATCCTTAAGGCAC 58.788 40.000 17.32 12.84 41.84 5.01
2165 2379 6.395426 TGCAATATGCTTTGATCCTTAAGG 57.605 37.500 15.98 15.98 45.31 2.69
2192 2415 3.245622 ACCCCAATCCCAAGGTAAAGAAG 60.246 47.826 0.00 0.00 0.00 2.85
2201 2424 4.788925 TGTCTTATACCCCAATCCCAAG 57.211 45.455 0.00 0.00 0.00 3.61
2206 2429 6.591935 TGATGAGTTGTCTTATACCCCAATC 58.408 40.000 0.00 0.00 0.00 2.67
2234 2457 3.238108 TGAAGAAGGAGCGCTAAAGAG 57.762 47.619 11.50 0.00 0.00 2.85
2235 2458 3.678056 TTGAAGAAGGAGCGCTAAAGA 57.322 42.857 11.50 0.00 0.00 2.52
2236 2459 3.498397 TGTTTGAAGAAGGAGCGCTAAAG 59.502 43.478 11.50 0.00 0.00 1.85
2274 2497 4.508551 TGTTGTATAGTCCTCCTCGGTA 57.491 45.455 0.00 0.00 0.00 4.02
2368 2591 8.484575 TGTATACGGGAAAACATACATTCCTAA 58.515 33.333 4.70 0.00 43.75 2.69
2369 2592 7.927629 GTGTATACGGGAAAACATACATTCCTA 59.072 37.037 4.70 0.00 43.75 2.94
2370 2593 6.764560 GTGTATACGGGAAAACATACATTCCT 59.235 38.462 4.70 0.00 43.75 3.36
2371 2594 6.764560 AGTGTATACGGGAAAACATACATTCC 59.235 38.462 0.00 0.00 43.58 3.01
2372 2595 7.279313 ACAGTGTATACGGGAAAACATACATTC 59.721 37.037 0.00 0.00 36.54 2.67
2373 2596 7.107542 ACAGTGTATACGGGAAAACATACATT 58.892 34.615 0.00 0.00 36.54 2.71
2387 2610 7.088905 AGTTTCTTCCACTAACAGTGTATACG 58.911 38.462 0.00 0.00 44.50 3.06
2478 2711 5.809001 ACTCCAAAGCTCTGATCATGTAAA 58.191 37.500 0.00 0.00 0.00 2.01
2562 2795 7.064609 TGCAAATGATTTAGAAAGAGTAGGTCG 59.935 37.037 0.00 0.00 0.00 4.79
2618 2889 8.137437 AGCATAACATGGACATTAATTTGCTAC 58.863 33.333 0.00 0.00 34.10 3.58
2788 3076 1.726853 ATTGTCTAGCGAGCACAACC 58.273 50.000 11.73 0.00 32.96 3.77
2789 3077 5.470845 AAATATTGTCTAGCGAGCACAAC 57.529 39.130 11.73 0.00 32.96 3.32
2790 3078 6.494893 AAAAATATTGTCTAGCGAGCACAA 57.505 33.333 11.83 11.83 34.61 3.33
2792 3080 6.575201 GCATAAAAATATTGTCTAGCGAGCAC 59.425 38.462 0.00 0.00 0.00 4.40
2793 3081 6.563939 CGCATAAAAATATTGTCTAGCGAGCA 60.564 38.462 15.44 0.00 43.59 4.26
2794 3082 5.785599 CGCATAAAAATATTGTCTAGCGAGC 59.214 40.000 15.44 0.00 43.59 5.03
3043 3347 3.878778 AGTTAATGTCATGACCCTGCTC 58.121 45.455 22.85 9.18 0.00 4.26
3044 3348 4.307032 AAGTTAATGTCATGACCCTGCT 57.693 40.909 22.85 11.43 0.00 4.24
3159 3465 6.578163 ACTACTAAATCTCCTCGAATAGCC 57.422 41.667 0.00 0.00 0.00 3.93
3467 11836 7.933033 GGTTTACCCATGATGCATGATTTAAAT 59.067 33.333 2.46 0.00 43.81 1.40
3488 11857 9.772973 ATTCGAGTAATAACATATGCTGGTTTA 57.227 29.630 1.58 0.00 0.00 2.01
3675 12067 9.757227 TCCCAACAAAACTACAATTTTATCAAG 57.243 29.630 0.00 0.00 30.57 3.02
3730 12123 5.932619 TGCTCAAGAGTGGCTACTTATAA 57.067 39.130 3.47 0.00 37.25 0.98
3743 12139 5.368256 ACAAGCTTTGTATTGCTCAAGAG 57.632 39.130 0.00 0.00 43.27 2.85
3782 12178 8.478877 ACCATGTCAATAAAAACCTTTACAACA 58.521 29.630 0.00 0.00 29.82 3.33
3922 12323 1.332195 GAGCCTTTTCAGCCCAGTTT 58.668 50.000 0.00 0.00 0.00 2.66
3949 12350 7.354751 AGTAATTTTGTTTGGGCTTCTTGTA 57.645 32.000 0.00 0.00 0.00 2.41
3964 12365 8.286800 TCGTCAATTGGTTCTGTAGTAATTTTG 58.713 33.333 5.42 0.00 0.00 2.44
4003 12416 6.207928 CAGTGTATTTGTCATTTGAACTGCA 58.792 36.000 0.00 0.00 0.00 4.41
4026 12439 0.325933 CTCCACTGATGAGTTGGCCA 59.674 55.000 0.00 0.00 0.00 5.36
4085 12498 8.439964 TGTTACTATAGGACCCTTTGTAAAGT 57.560 34.615 4.43 0.00 34.20 2.66
4135 12549 9.705290 TCAAAAGATATTTTTGGCCTCTAAAAC 57.295 29.630 3.32 0.00 39.25 2.43
4418 12839 5.996513 ACATTTATGATTTTGTGCTTGGCAA 59.003 32.000 0.00 0.00 41.47 4.52
4419 12840 5.549347 ACATTTATGATTTTGTGCTTGGCA 58.451 33.333 0.00 0.00 35.60 4.92
4462 12883 5.817296 GGCCAAAATATAGAAAGCCAAAAGG 59.183 40.000 0.00 0.00 38.79 3.11
4491 12912 8.803235 TCATATATACAAGTACATGTGGGAGAC 58.197 37.037 13.80 0.00 34.75 3.36
4521 12942 9.692749 CGACTTAGTATTATCAGGATGCTAAAA 57.307 33.333 0.00 0.00 33.37 1.52
4537 12958 9.371136 CCATGTTATGAATATGCGACTTAGTAT 57.629 33.333 0.00 0.00 0.00 2.12
4543 12964 7.386059 TGATACCATGTTATGAATATGCGACT 58.614 34.615 0.00 0.00 0.00 4.18
4546 12967 7.458677 CACTGATACCATGTTATGAATATGCG 58.541 38.462 0.00 0.00 0.00 4.73
4592 13014 0.669619 TAAGACGAGTTGTGTCGCCA 59.330 50.000 0.00 0.00 44.06 5.69
4594 13016 2.592194 TCATAAGACGAGTTGTGTCGC 58.408 47.619 0.00 0.00 44.06 5.19
4625 13047 4.599241 AGGAGAAAGAGGAAAATCAGACCA 59.401 41.667 0.00 0.00 0.00 4.02
4630 13052 4.202503 ACAGCAGGAGAAAGAGGAAAATCA 60.203 41.667 0.00 0.00 0.00 2.57
4635 13057 2.050144 ACACAGCAGGAGAAAGAGGAA 58.950 47.619 0.00 0.00 0.00 3.36
4649 13071 5.877012 TCTGGAGAAATAAGATGAACACAGC 59.123 40.000 0.00 0.00 0.00 4.40
4654 13076 6.516718 TCGGATCTGGAGAAATAAGATGAAC 58.483 40.000 0.62 0.00 30.83 3.18
4672 13094 2.802816 CAATTTGGGACTCGATCGGATC 59.197 50.000 16.41 12.71 0.00 3.36
4742 13165 1.300388 AACGAGTCGGTGGTTTCGG 60.300 57.895 18.30 0.00 37.38 4.30
4751 13174 0.666577 GGTCAGGAACAACGAGTCGG 60.667 60.000 18.30 2.03 0.00 4.79
4753 13176 1.282930 GCGGTCAGGAACAACGAGTC 61.283 60.000 0.00 0.00 0.00 3.36
4754 13177 1.300697 GCGGTCAGGAACAACGAGT 60.301 57.895 0.00 0.00 0.00 4.18
4771 13194 2.889503 CGCAGAGCAGCTACAGGC 60.890 66.667 0.00 0.00 42.19 4.85
4813 13236 2.034221 GGGCTTGGAGGTGGTGAC 59.966 66.667 0.00 0.00 0.00 3.67
4819 13242 1.988406 GTCTACCGGGCTTGGAGGT 60.988 63.158 6.32 0.00 41.73 3.85
4828 13251 1.520787 GATGTTGGCGTCTACCGGG 60.521 63.158 6.32 0.00 36.94 5.73
4833 13256 0.824109 CCTGGAGATGTTGGCGTCTA 59.176 55.000 0.00 0.00 40.79 2.59
4836 13259 0.110486 AAACCTGGAGATGTTGGCGT 59.890 50.000 0.00 0.00 0.00 5.68
4838 13261 1.177401 GGAAACCTGGAGATGTTGGC 58.823 55.000 0.00 0.00 0.00 4.52
4841 13264 1.279271 CGGAGGAAACCTGGAGATGTT 59.721 52.381 0.00 0.00 31.76 2.71
4843 13266 3.768633 CGGAGGAAACCTGGAGATG 57.231 57.895 0.00 0.00 31.76 2.90
4889 13312 1.959226 GAAGAAACACAGCCGGCGA 60.959 57.895 23.20 0.00 0.00 5.54
4898 13321 6.268566 AGAATGACAAAAGCTGAAGAAACAC 58.731 36.000 0.00 0.00 0.00 3.32
4933 13356 1.289160 CTGAGAATGGGGAGGACCAA 58.711 55.000 0.00 0.00 45.13 3.67
4936 13359 1.680249 GCAACTGAGAATGGGGAGGAC 60.680 57.143 0.00 0.00 0.00 3.85
4937 13360 0.620556 GCAACTGAGAATGGGGAGGA 59.379 55.000 0.00 0.00 0.00 3.71
4938 13361 0.622665 AGCAACTGAGAATGGGGAGG 59.377 55.000 0.00 0.00 0.00 4.30
4939 13362 1.741732 CGAGCAACTGAGAATGGGGAG 60.742 57.143 0.00 0.00 0.00 4.30
4940 13363 0.250234 CGAGCAACTGAGAATGGGGA 59.750 55.000 0.00 0.00 0.00 4.81
4941 13364 0.250234 TCGAGCAACTGAGAATGGGG 59.750 55.000 0.00 0.00 0.00 4.96
4942 13365 1.066573 AGTCGAGCAACTGAGAATGGG 60.067 52.381 0.00 0.00 0.00 4.00
4943 13366 2.376808 AGTCGAGCAACTGAGAATGG 57.623 50.000 0.00 0.00 0.00 3.16
4944 13367 3.583806 AGAAGTCGAGCAACTGAGAATG 58.416 45.455 0.00 0.00 0.00 2.67
4945 13368 3.951775 AGAAGTCGAGCAACTGAGAAT 57.048 42.857 0.00 0.00 0.00 2.40
4946 13369 3.568430 TGTAGAAGTCGAGCAACTGAGAA 59.432 43.478 0.00 0.00 0.00 2.87
4947 13370 3.058155 GTGTAGAAGTCGAGCAACTGAGA 60.058 47.826 0.00 0.00 0.00 3.27
4948 13371 3.238441 GTGTAGAAGTCGAGCAACTGAG 58.762 50.000 0.00 0.00 0.00 3.35
4949 13372 2.030185 GGTGTAGAAGTCGAGCAACTGA 60.030 50.000 0.00 0.00 0.00 3.41
4950 13373 2.329379 GGTGTAGAAGTCGAGCAACTG 58.671 52.381 0.00 0.00 0.00 3.16
4951 13374 1.272769 GGGTGTAGAAGTCGAGCAACT 59.727 52.381 0.00 0.00 0.00 3.16
4952 13375 1.272769 AGGGTGTAGAAGTCGAGCAAC 59.727 52.381 0.00 0.00 0.00 4.17
4953 13376 1.629043 AGGGTGTAGAAGTCGAGCAA 58.371 50.000 0.00 0.00 0.00 3.91
4954 13377 2.089980 GTAGGGTGTAGAAGTCGAGCA 58.910 52.381 0.00 0.00 0.00 4.26
4955 13378 1.404748 GGTAGGGTGTAGAAGTCGAGC 59.595 57.143 0.00 0.00 0.00 5.03
4956 13379 2.944349 GAGGTAGGGTGTAGAAGTCGAG 59.056 54.545 0.00 0.00 0.00 4.04
4957 13380 2.575279 AGAGGTAGGGTGTAGAAGTCGA 59.425 50.000 0.00 0.00 0.00 4.20
4958 13381 3.002038 AGAGGTAGGGTGTAGAAGTCG 57.998 52.381 0.00 0.00 0.00 4.18
4959 13382 7.421087 AATTAAGAGGTAGGGTGTAGAAGTC 57.579 40.000 0.00 0.00 0.00 3.01
4960 13383 7.069702 GCTAATTAAGAGGTAGGGTGTAGAAGT 59.930 40.741 0.00 0.00 0.00 3.01
4961 13384 7.288158 AGCTAATTAAGAGGTAGGGTGTAGAAG 59.712 40.741 0.00 0.00 0.00 2.85
4962 13385 7.130775 AGCTAATTAAGAGGTAGGGTGTAGAA 58.869 38.462 0.00 0.00 0.00 2.10
4963 13386 6.680540 AGCTAATTAAGAGGTAGGGTGTAGA 58.319 40.000 0.00 0.00 0.00 2.59
4964 13387 6.980416 AGCTAATTAAGAGGTAGGGTGTAG 57.020 41.667 0.00 0.00 0.00 2.74
4965 13388 6.899075 TGAAGCTAATTAAGAGGTAGGGTGTA 59.101 38.462 0.00 0.00 0.00 2.90
4966 13389 5.724854 TGAAGCTAATTAAGAGGTAGGGTGT 59.275 40.000 0.00 0.00 0.00 4.16
4967 13390 6.235231 TGAAGCTAATTAAGAGGTAGGGTG 57.765 41.667 0.00 0.00 0.00 4.61
4968 13391 6.043358 GGATGAAGCTAATTAAGAGGTAGGGT 59.957 42.308 0.00 0.00 0.00 4.34
4969 13392 6.271159 AGGATGAAGCTAATTAAGAGGTAGGG 59.729 42.308 0.00 0.00 0.00 3.53
4970 13393 7.309770 AGGATGAAGCTAATTAAGAGGTAGG 57.690 40.000 0.00 0.00 0.00 3.18
4971 13394 7.015682 TGGAGGATGAAGCTAATTAAGAGGTAG 59.984 40.741 0.00 0.00 0.00 3.18
4972 13395 6.844388 TGGAGGATGAAGCTAATTAAGAGGTA 59.156 38.462 0.00 0.00 0.00 3.08
4973 13396 5.667626 TGGAGGATGAAGCTAATTAAGAGGT 59.332 40.000 0.00 0.00 0.00 3.85
4974 13397 6.179906 TGGAGGATGAAGCTAATTAAGAGG 57.820 41.667 0.00 0.00 0.00 3.69
4975 13398 6.204495 GCTTGGAGGATGAAGCTAATTAAGAG 59.796 42.308 0.00 0.00 41.21 2.85
4976 13399 6.058183 GCTTGGAGGATGAAGCTAATTAAGA 58.942 40.000 0.00 0.00 41.21 2.10
4977 13400 5.240403 GGCTTGGAGGATGAAGCTAATTAAG 59.760 44.000 0.00 0.00 43.47 1.85
4978 13401 5.133221 GGCTTGGAGGATGAAGCTAATTAA 58.867 41.667 0.00 0.00 43.47 1.40
4979 13402 4.718961 GGCTTGGAGGATGAAGCTAATTA 58.281 43.478 0.00 0.00 43.47 1.40
4980 13403 3.560105 GGCTTGGAGGATGAAGCTAATT 58.440 45.455 0.00 0.00 43.47 1.40
4981 13404 2.486191 CGGCTTGGAGGATGAAGCTAAT 60.486 50.000 0.00 0.00 43.47 1.73
4982 13405 1.134401 CGGCTTGGAGGATGAAGCTAA 60.134 52.381 0.00 0.00 43.47 3.09
4983 13406 0.465705 CGGCTTGGAGGATGAAGCTA 59.534 55.000 0.00 0.00 43.47 3.32
4984 13407 1.222936 CGGCTTGGAGGATGAAGCT 59.777 57.895 0.00 0.00 43.47 3.74
4985 13408 1.821332 CCGGCTTGGAGGATGAAGC 60.821 63.158 0.00 0.00 43.27 3.86
4986 13409 1.821332 GCCGGCTTGGAGGATGAAG 60.821 63.158 22.15 0.00 42.00 3.02
4987 13410 2.272146 GCCGGCTTGGAGGATGAA 59.728 61.111 22.15 0.00 42.00 2.57
4988 13411 3.797353 GGCCGGCTTGGAGGATGA 61.797 66.667 28.56 0.00 42.00 2.92
4989 13412 4.113815 TGGCCGGCTTGGAGGATG 62.114 66.667 28.56 0.00 42.00 3.51
4990 13413 4.115199 GTGGCCGGCTTGGAGGAT 62.115 66.667 28.56 0.00 42.00 3.24
5000 13423 3.995506 GATTCAGTGGGGTGGCCGG 62.996 68.421 0.00 0.00 0.00 6.13
5001 13424 2.438434 GATTCAGTGGGGTGGCCG 60.438 66.667 0.00 0.00 0.00 6.13
5002 13425 1.077429 GAGATTCAGTGGGGTGGCC 60.077 63.158 0.00 0.00 0.00 5.36
5003 13426 1.077429 GGAGATTCAGTGGGGTGGC 60.077 63.158 0.00 0.00 0.00 5.01
5004 13427 0.921896 ATGGAGATTCAGTGGGGTGG 59.078 55.000 0.00 0.00 0.00 4.61
5005 13428 1.283029 ACATGGAGATTCAGTGGGGTG 59.717 52.381 0.00 0.00 0.00 4.61
5006 13429 1.673767 ACATGGAGATTCAGTGGGGT 58.326 50.000 0.00 0.00 0.00 4.95
5007 13430 2.814805 AACATGGAGATTCAGTGGGG 57.185 50.000 0.00 0.00 0.00 4.96
5008 13431 3.693085 CAGAAACATGGAGATTCAGTGGG 59.307 47.826 0.00 0.00 31.92 4.61
5009 13432 4.394300 GTCAGAAACATGGAGATTCAGTGG 59.606 45.833 0.00 0.00 31.92 4.00
5010 13433 4.999311 TGTCAGAAACATGGAGATTCAGTG 59.001 41.667 0.00 0.00 31.92 3.66
5011 13434 4.999950 GTGTCAGAAACATGGAGATTCAGT 59.000 41.667 0.00 0.00 40.80 3.41
5012 13435 4.092529 CGTGTCAGAAACATGGAGATTCAG 59.907 45.833 0.00 0.00 40.60 3.02
5013 13436 3.996363 CGTGTCAGAAACATGGAGATTCA 59.004 43.478 0.00 0.00 40.60 2.57
5014 13437 3.181516 GCGTGTCAGAAACATGGAGATTC 60.182 47.826 0.00 0.00 43.85 2.52
5015 13438 2.744202 GCGTGTCAGAAACATGGAGATT 59.256 45.455 0.00 0.00 43.85 2.40
5016 13439 2.350522 GCGTGTCAGAAACATGGAGAT 58.649 47.619 0.00 0.00 43.85 2.75
5017 13440 1.608025 GGCGTGTCAGAAACATGGAGA 60.608 52.381 0.00 0.00 43.85 3.71
5018 13441 0.798776 GGCGTGTCAGAAACATGGAG 59.201 55.000 0.00 0.00 43.85 3.86
5019 13442 0.107643 TGGCGTGTCAGAAACATGGA 59.892 50.000 0.00 0.00 43.85 3.41
5020 13443 0.238289 GTGGCGTGTCAGAAACATGG 59.762 55.000 0.00 0.00 43.85 3.66
5021 13444 0.943673 TGTGGCGTGTCAGAAACATG 59.056 50.000 0.00 0.00 46.01 3.21
5022 13445 1.806542 GATGTGGCGTGTCAGAAACAT 59.193 47.619 0.00 0.00 40.80 2.71
5023 13446 1.225855 GATGTGGCGTGTCAGAAACA 58.774 50.000 0.00 0.00 34.78 2.83
5024 13447 1.225855 TGATGTGGCGTGTCAGAAAC 58.774 50.000 0.00 0.00 0.00 2.78
5025 13448 1.805943 CATGATGTGGCGTGTCAGAAA 59.194 47.619 0.00 0.00 0.00 2.52
5026 13449 1.270785 ACATGATGTGGCGTGTCAGAA 60.271 47.619 0.00 0.00 32.82 3.02
5027 13450 0.321346 ACATGATGTGGCGTGTCAGA 59.679 50.000 0.00 0.00 32.82 3.27
5028 13451 2.845019 ACATGATGTGGCGTGTCAG 58.155 52.632 0.00 0.00 32.82 3.51
5031 13454 1.739466 GATTGACATGATGTGGCGTGT 59.261 47.619 1.23 0.00 39.40 4.49
5032 13455 1.738908 TGATTGACATGATGTGGCGTG 59.261 47.619 1.23 0.00 39.40 5.34
5033 13456 2.112380 TGATTGACATGATGTGGCGT 57.888 45.000 1.23 0.00 39.40 5.68
5043 13466 7.286087 ACATGCATAAGTAACCATGATTGACAT 59.714 33.333 0.00 0.00 38.65 3.06
5044 13467 6.602803 ACATGCATAAGTAACCATGATTGACA 59.397 34.615 0.00 0.00 38.65 3.58
5045 13468 7.031226 ACATGCATAAGTAACCATGATTGAC 57.969 36.000 0.00 0.00 38.65 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.