Multiple sequence alignment - TraesCS2D01G080300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G080300 chr2D 100.000 4251 0 0 1 4251 34276601 34272351 0.000000e+00 7851.0
1 TraesCS2D01G080300 chr2D 85.075 67 8 2 3603 3669 382702778 382702714 2.740000e-07 67.6
2 TraesCS2D01G080300 chr2B 92.555 2861 162 29 763 3603 56778886 56776057 0.000000e+00 4056.0
3 TraesCS2D01G080300 chr2B 85.452 763 85 15 3 757 56782765 56782021 0.000000e+00 771.0
4 TraesCS2D01G080300 chr2B 93.204 515 26 5 3746 4251 56776061 56775547 0.000000e+00 749.0
5 TraesCS2D01G080300 chr2B 89.174 351 38 0 1582 1932 292616388 292616038 5.050000e-119 438.0
6 TraesCS2D01G080300 chr2B 87.931 348 42 0 1585 1932 292623263 292622916 1.100000e-110 411.0
7 TraesCS2D01G080300 chr2B 92.488 213 16 0 910 1122 203466647 203466859 5.340000e-79 305.0
8 TraesCS2D01G080300 chr2B 91.525 59 4 1 3602 3659 690017063 690017005 3.520000e-11 80.5
9 TraesCS2D01G080300 chr2A 90.625 1568 97 19 916 2439 37218420 37216859 0.000000e+00 2036.0
10 TraesCS2D01G080300 chr2A 96.168 1122 39 1 2482 3603 37216847 37215730 0.000000e+00 1831.0
11 TraesCS2D01G080300 chr2A 95.433 416 17 2 3837 4251 37215675 37215261 0.000000e+00 662.0
12 TraesCS2D01G080300 chr2A 84.615 117 13 5 3606 3719 496918116 496918002 1.250000e-20 111.0
13 TraesCS2D01G080300 chr5B 85.408 699 78 16 910 1607 316762163 316762838 0.000000e+00 704.0
14 TraesCS2D01G080300 chr5B 78.000 300 57 8 127 422 530653415 530653709 3.380000e-41 180.0
15 TraesCS2D01G080300 chr6B 92.958 213 15 0 910 1122 160729123 160729335 1.150000e-80 311.0
16 TraesCS2D01G080300 chr6B 93.627 204 13 0 910 1113 116214648 116214851 5.340000e-79 305.0
17 TraesCS2D01G080300 chr6B 92.019 213 17 0 910 1122 719484523 719484311 2.480000e-77 300.0
18 TraesCS2D01G080300 chr6B 74.395 496 93 15 134 601 671727485 671726996 9.390000e-42 182.0
19 TraesCS2D01G080300 chr7B 92.647 204 15 0 910 1113 66447494 66447291 1.160000e-75 294.0
20 TraesCS2D01G080300 chr7B 75.052 481 99 16 127 595 664550953 664551424 2.000000e-48 204.0
21 TraesCS2D01G080300 chr3B 91.549 213 18 0 910 1122 504523121 504522909 1.160000e-75 294.0
22 TraesCS2D01G080300 chr3B 75.726 482 84 26 127 598 809449938 809450396 1.200000e-50 211.0
23 TraesCS2D01G080300 chr3B 85.047 107 16 0 3602 3708 762336975 762337081 4.490000e-20 110.0
24 TraesCS2D01G080300 chrUn 75.638 431 79 18 181 586 92406838 92407267 1.560000e-44 191.0
25 TraesCS2D01G080300 chrUn 75.467 428 79 17 184 586 380756729 380756303 7.260000e-43 185.0
26 TraesCS2D01G080300 chrUn 85.321 109 14 2 3603 3710 214872746 214872853 1.250000e-20 111.0
27 TraesCS2D01G080300 chr7D 75.058 433 80 17 181 586 207314156 207314587 4.370000e-40 176.0
28 TraesCS2D01G080300 chr1D 77.517 298 61 5 127 422 439108935 439108642 1.570000e-39 174.0
29 TraesCS2D01G080300 chr7A 84.173 139 22 0 3603 3741 701239955 701239817 7.410000e-28 135.0
30 TraesCS2D01G080300 chr3D 82.946 129 22 0 3603 3731 573127251 573127123 2.690000e-22 117.0
31 TraesCS2D01G080300 chr4B 91.379 58 4 1 3603 3659 32894676 32894733 1.270000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G080300 chr2D 34272351 34276601 4250 True 7851.000000 7851 100.000000 1 4251 1 chr2D.!!$R1 4250
1 TraesCS2D01G080300 chr2B 56775547 56782765 7218 True 1858.666667 4056 90.403667 3 4251 3 chr2B.!!$R4 4248
2 TraesCS2D01G080300 chr2A 37215261 37218420 3159 True 1509.666667 2036 94.075333 916 4251 3 chr2A.!!$R2 3335
3 TraesCS2D01G080300 chr5B 316762163 316762838 675 False 704.000000 704 85.408000 910 1607 1 chr5B.!!$F1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 433 0.034863 AACATATTTGGGCCGGTCGT 60.035 50.0 1.90 0.00 0.00 4.34 F
760 769 0.336737 AGGAGAAGGTGATCGTCCCT 59.663 55.0 3.56 0.00 0.00 4.20 F
1327 4487 0.316937 CACTGAAACACGCGCATGTT 60.317 50.0 17.23 17.23 44.76 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 4428 0.186873 GGCCATGAATCCCCATCAGT 59.813 55.0 0.0 0.0 0.00 3.41 R
1599 4789 0.251634 TGCATATTCCACGACCTGCA 59.748 50.0 0.0 0.0 37.29 4.41 R
3319 6522 0.601558 GTTCTCTGACACGGTAGCCA 59.398 55.0 0.0 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.745975 TGTTGACGAAATGGACTGATGTC 59.254 43.478 0.00 0.00 42.22 3.06
29 30 4.690748 TGACGAAATGGACTGATGTCTTTC 59.309 41.667 0.00 0.00 42.54 2.62
39 40 4.950050 ACTGATGTCTTTCGTTCTCTTGT 58.050 39.130 0.00 0.00 0.00 3.16
66 67 1.134226 GGTCAACGTTACGTCACAGG 58.866 55.000 11.79 0.00 39.99 4.00
85 86 0.247419 GTCATCAATGTGACAGCGCG 60.247 55.000 0.00 0.00 46.04 6.86
97 98 3.812019 AGCGCGACACCGGAGTAG 61.812 66.667 12.10 8.42 36.06 2.57
152 159 8.547967 ACTCACAACTATTACAAATACACTGG 57.452 34.615 0.00 0.00 0.00 4.00
157 164 8.573035 ACAACTATTACAAATACACTGGTTTGG 58.427 33.333 11.55 0.59 39.12 3.28
159 166 8.331730 ACTATTACAAATACACTGGTTTGGAC 57.668 34.615 11.55 0.00 39.12 4.02
161 168 7.833285 ATTACAAATACACTGGTTTGGACTT 57.167 32.000 11.55 0.00 39.12 3.01
162 169 8.927675 ATTACAAATACACTGGTTTGGACTTA 57.072 30.769 11.55 0.00 39.12 2.24
164 171 7.833285 ACAAATACACTGGTTTGGACTTAAT 57.167 32.000 11.55 0.00 39.12 1.40
166 173 9.528489 ACAAATACACTGGTTTGGACTTAATAT 57.472 29.630 11.55 0.00 39.12 1.28
168 175 8.519799 AATACACTGGTTTGGACTTAATATGG 57.480 34.615 0.00 0.00 0.00 2.74
171 178 7.007723 ACACTGGTTTGGACTTAATATGGAAA 58.992 34.615 0.00 0.00 0.00 3.13
172 179 7.507616 ACACTGGTTTGGACTTAATATGGAAAA 59.492 33.333 0.00 0.00 0.00 2.29
173 180 8.028938 CACTGGTTTGGACTTAATATGGAAAAG 58.971 37.037 0.00 0.00 0.00 2.27
174 181 7.728532 ACTGGTTTGGACTTAATATGGAAAAGT 59.271 33.333 0.00 0.00 36.20 2.66
175 182 9.238368 CTGGTTTGGACTTAATATGGAAAAGTA 57.762 33.333 0.00 0.00 33.72 2.24
176 183 9.589461 TGGTTTGGACTTAATATGGAAAAGTAA 57.411 29.630 0.00 0.00 33.72 2.24
258 265 4.022416 CCATGGTGTCTATCTCAGCTAGAC 60.022 50.000 8.52 8.52 43.49 2.59
285 292 7.611213 AATACTCCCACGACTTTGATAAAAG 57.389 36.000 0.52 0.52 35.93 2.27
286 293 5.223449 ACTCCCACGACTTTGATAAAAGA 57.777 39.130 9.70 0.00 34.06 2.52
287 294 4.995487 ACTCCCACGACTTTGATAAAAGAC 59.005 41.667 9.70 2.25 34.06 3.01
291 299 4.386230 CACGACTTTGATAAAAGACTGCG 58.614 43.478 9.70 9.24 34.06 5.18
296 304 7.113658 CGACTTTGATAAAAGACTGCGATTAG 58.886 38.462 9.70 0.00 34.06 1.73
298 306 8.723942 ACTTTGATAAAAGACTGCGATTAGAT 57.276 30.769 9.70 0.00 34.06 1.98
299 307 9.167311 ACTTTGATAAAAGACTGCGATTAGATT 57.833 29.630 9.70 0.00 34.06 2.40
300 308 9.430838 CTTTGATAAAAGACTGCGATTAGATTG 57.569 33.333 0.00 0.00 31.58 2.67
307 315 2.939103 ACTGCGATTAGATTGGAGCAAC 59.061 45.455 0.00 0.00 35.70 4.17
328 336 3.632145 ACAATGTTGTCACTCTTTCACCC 59.368 43.478 0.00 0.00 36.50 4.61
341 349 4.699637 TCTTTCACCCGCACGAATAATAT 58.300 39.130 0.00 0.00 0.00 1.28
354 362 9.103048 CGCACGAATAATATGAATAAAGGTTTC 57.897 33.333 0.00 0.00 0.00 2.78
376 384 2.689471 TGAAAGCCCATCAAATCATCCG 59.311 45.455 0.00 0.00 0.00 4.18
393 401 2.790433 TCCGTCCAAAAAGATGGGAAG 58.210 47.619 0.16 0.00 42.36 3.46
401 409 4.321527 CCAAAAAGATGGGAAGACTTGAGC 60.322 45.833 0.00 0.00 36.79 4.26
409 417 2.612972 GGGAAGACTTGAGCGATGAACA 60.613 50.000 0.00 0.00 0.00 3.18
415 423 6.355397 AGACTTGAGCGATGAACATATTTG 57.645 37.500 0.00 0.00 0.00 2.32
420 428 1.334960 GCGATGAACATATTTGGGCCG 60.335 52.381 0.00 0.00 0.00 6.13
425 433 0.034863 AACATATTTGGGCCGGTCGT 60.035 50.000 1.90 0.00 0.00 4.34
433 441 2.884207 GGCCGGTCGTCGAATCAC 60.884 66.667 1.90 0.00 42.43 3.06
435 443 2.158959 GCCGGTCGTCGAATCACAG 61.159 63.158 1.90 0.00 42.43 3.66
436 444 1.516386 CCGGTCGTCGAATCACAGG 60.516 63.158 0.00 0.00 42.43 4.00
438 446 0.797249 CGGTCGTCGAATCACAGGAC 60.797 60.000 0.00 0.00 42.43 3.85
447 455 2.427506 GAATCACAGGACCTTCACCAC 58.572 52.381 0.00 0.00 0.00 4.16
452 460 0.886490 CAGGACCTTCACCACTGTGC 60.886 60.000 1.29 0.00 42.46 4.57
461 469 0.518636 CACCACTGTGCCGATGAAAG 59.481 55.000 1.29 0.00 35.31 2.62
465 473 2.096496 CCACTGTGCCGATGAAAGATTC 59.904 50.000 1.29 0.00 0.00 2.52
467 475 2.290260 ACTGTGCCGATGAAAGATTCCA 60.290 45.455 0.00 0.00 0.00 3.53
472 480 2.565841 CCGATGAAAGATTCCACCTCC 58.434 52.381 0.00 0.00 0.00 4.30
474 482 2.939103 CGATGAAAGATTCCACCTCCAC 59.061 50.000 0.00 0.00 0.00 4.02
519 527 6.787085 AGCTTCACACACTAACATAAACTC 57.213 37.500 0.00 0.00 0.00 3.01
520 528 6.288294 AGCTTCACACACTAACATAAACTCA 58.712 36.000 0.00 0.00 0.00 3.41
524 532 5.989168 TCACACACTAACATAAACTCACCAG 59.011 40.000 0.00 0.00 0.00 4.00
543 551 2.728318 CAGACTCGAATATGCCGATGTG 59.272 50.000 1.63 0.00 35.35 3.21
549 557 0.392706 AATATGCCGATGTGCGAGGA 59.607 50.000 0.00 0.00 44.57 3.71
559 567 2.702847 GTGCGAGGACACAAAACCT 58.297 52.632 0.00 0.00 40.40 3.50
563 571 2.103432 TGCGAGGACACAAAACCTTCTA 59.897 45.455 0.00 0.00 36.57 2.10
573 581 8.074370 GGACACAAAACCTTCTAACTTTATGAC 58.926 37.037 0.00 0.00 0.00 3.06
576 584 7.860872 CACAAAACCTTCTAACTTTATGACACC 59.139 37.037 0.00 0.00 0.00 4.16
630 638 1.705256 TGCGAAACTACGATCACCAC 58.295 50.000 0.00 0.00 35.09 4.16
633 641 3.129813 TGCGAAACTACGATCACCACTAT 59.870 43.478 0.00 0.00 35.09 2.12
635 643 5.163632 TGCGAAACTACGATCACCACTATAA 60.164 40.000 0.00 0.00 35.09 0.98
636 644 5.919141 GCGAAACTACGATCACCACTATAAT 59.081 40.000 0.00 0.00 35.09 1.28
648 657 8.862325 ATCACCACTATAATTGACAAAGAACA 57.138 30.769 0.00 0.00 0.00 3.18
649 658 8.862325 TCACCACTATAATTGACAAAGAACAT 57.138 30.769 0.00 0.00 0.00 2.71
650 659 9.952030 TCACCACTATAATTGACAAAGAACATA 57.048 29.630 0.00 0.00 0.00 2.29
673 682 8.788806 CATAGAATAGAACTACTGAAGATCCGT 58.211 37.037 0.00 0.00 0.00 4.69
677 686 5.508200 AGAACTACTGAAGATCCGTGATC 57.492 43.478 5.94 5.94 39.17 2.92
690 699 2.690497 TCCGTGATCTTCCATCTCTCAC 59.310 50.000 0.00 0.00 34.33 3.51
697 706 6.756074 GTGATCTTCCATCTCTCACTGTTAAG 59.244 42.308 0.00 0.00 34.73 1.85
702 711 7.344093 TCTTCCATCTCTCACTGTTAAGATGAT 59.656 37.037 18.38 9.14 45.09 2.45
725 734 0.391130 CGGAGGCGATGAGACCAAAA 60.391 55.000 0.00 0.00 0.00 2.44
733 742 4.437930 GGCGATGAGACCAAAATTTCTCTG 60.438 45.833 6.47 0.00 39.30 3.35
739 748 0.456653 CCAAAATTTCTCTGGCGGCG 60.457 55.000 0.51 0.51 0.00 6.46
741 750 0.608035 AAAATTTCTCTGGCGGCGGA 60.608 50.000 20.51 20.51 0.00 5.54
757 766 0.382515 CGGAGGAGAAGGTGATCGTC 59.617 60.000 0.00 0.00 0.00 4.20
759 768 0.747852 GAGGAGAAGGTGATCGTCCC 59.252 60.000 3.56 0.00 0.00 4.46
760 769 0.336737 AGGAGAAGGTGATCGTCCCT 59.663 55.000 3.56 0.00 0.00 4.20
761 770 0.461961 GGAGAAGGTGATCGTCCCTG 59.538 60.000 3.56 0.00 0.00 4.45
768 3906 2.509336 GATCGTCCCTGCCACGTG 60.509 66.667 9.08 9.08 38.45 4.49
812 3952 1.299089 GCAACGTTGTGACAAGGCC 60.299 57.895 27.78 0.00 0.00 5.19
815 3955 3.276091 CGTTGTGACAAGGCCGCA 61.276 61.111 5.01 0.00 0.00 5.69
968 4115 4.838486 CGCAGCCTCGTCGTCTCC 62.838 72.222 0.00 0.00 0.00 3.71
1110 4263 1.405256 CCAACTCACTAGCCTGCTCAG 60.405 57.143 0.00 0.00 0.00 3.35
1268 4428 2.351418 GCTTGCTTGCGTATGTGATGTA 59.649 45.455 0.00 0.00 0.00 2.29
1285 4445 3.862877 TGTACTGATGGGGATTCATGG 57.137 47.619 0.00 0.00 0.00 3.66
1327 4487 0.316937 CACTGAAACACGCGCATGTT 60.317 50.000 17.23 17.23 44.76 2.71
1332 4492 3.863681 AACACGCGCATGTTTTCAT 57.136 42.105 17.23 0.00 39.86 2.57
1334 4494 2.132740 ACACGCGCATGTTTTCATTT 57.867 40.000 1.82 0.00 38.64 2.32
1371 4531 0.530744 GGAATCGCCCCTTTTGTTCC 59.469 55.000 0.00 0.00 0.00 3.62
1372 4532 1.545841 GAATCGCCCCTTTTGTTCCT 58.454 50.000 0.00 0.00 0.00 3.36
1395 4558 5.633655 TTACTTGTGGAAGGTTAGGTTCA 57.366 39.130 0.00 0.00 32.95 3.18
1453 4616 7.308830 CCAAGGTTAGGTTCAGAAAATTCAGAG 60.309 40.741 0.00 0.00 0.00 3.35
1482 4645 2.807967 TGCTGAATGAAGGTTCTGAACG 59.192 45.455 13.89 0.00 31.11 3.95
1484 4647 3.070018 CTGAATGAAGGTTCTGAACGCT 58.930 45.455 13.89 9.52 31.11 5.07
1485 4648 4.245660 CTGAATGAAGGTTCTGAACGCTA 58.754 43.478 13.89 1.85 31.11 4.26
1486 4649 3.994392 TGAATGAAGGTTCTGAACGCTAC 59.006 43.478 13.89 6.58 0.00 3.58
1492 4682 0.790814 GTTCTGAACGCTACCAGCAC 59.209 55.000 4.57 0.00 42.58 4.40
1514 4704 6.299604 CACTTTTAGATCGTGCTACAAACAG 58.700 40.000 0.00 0.00 0.00 3.16
1594 4784 2.736670 AAAAGTCTCTGCTGGGTGTT 57.263 45.000 0.00 0.00 0.00 3.32
1597 4787 1.717032 AGTCTCTGCTGGGTGTTGTA 58.283 50.000 0.00 0.00 0.00 2.41
1599 4789 2.639839 AGTCTCTGCTGGGTGTTGTATT 59.360 45.455 0.00 0.00 0.00 1.89
1772 4962 1.999735 TCACAAGTCGCGAATGATTCC 59.000 47.619 24.81 6.36 0.00 3.01
1773 4963 1.731709 CACAAGTCGCGAATGATTCCA 59.268 47.619 24.81 0.00 0.00 3.53
1796 4986 4.681744 TGGTGTCTTTGCAAAAACTGATC 58.318 39.130 16.20 0.00 0.00 2.92
1797 4987 4.159321 TGGTGTCTTTGCAAAAACTGATCA 59.841 37.500 16.20 1.33 0.00 2.92
1800 4990 4.805192 TGTCTTTGCAAAAACTGATCAAGC 59.195 37.500 16.20 0.00 0.00 4.01
1810 5000 5.886960 AAACTGATCAAGCAGGTGTATTC 57.113 39.130 0.00 0.00 40.20 1.75
1816 5006 2.846206 TCAAGCAGGTGTATTCCAGGAT 59.154 45.455 0.00 0.00 0.00 3.24
1994 5184 1.327303 TGGTGGCTTCAATGTTGGAC 58.673 50.000 0.00 0.00 0.00 4.02
2040 5231 6.158598 GCATTGAAGAGGCAGTTCAAAAATA 58.841 36.000 15.51 0.00 44.81 1.40
2169 5360 8.730680 GTTAGTTGGATCATTGTTACTCATGTT 58.269 33.333 0.00 0.00 0.00 2.71
2208 5399 3.657038 ATGGAGCTTGGCTGCCCTG 62.657 63.158 17.53 9.91 46.33 4.45
2231 5422 2.851263 TTGTGCCTGTTAACGATCCT 57.149 45.000 0.26 0.00 0.00 3.24
2318 5509 8.503458 AATTTGACTCATGATCAAGTTCCTAG 57.497 34.615 15.94 0.00 37.38 3.02
2428 5622 6.421485 ACTTTCACATGCTTCCAGATCTATT 58.579 36.000 0.00 0.00 0.00 1.73
2439 5633 5.144692 TCCAGATCTATTGCTGCACTATC 57.855 43.478 0.00 3.33 0.00 2.08
2456 5650 9.352784 CTGCACTATCTGTAGCTCTATATTTTC 57.647 37.037 0.00 0.00 0.00 2.29
2457 5651 9.083422 TGCACTATCTGTAGCTCTATATTTTCT 57.917 33.333 0.00 0.00 0.00 2.52
2483 5685 5.703978 TTGCAAATGCTGTAGCTCTAAAA 57.296 34.783 6.97 0.00 42.66 1.52
2777 5979 6.966435 CCGTTGGCAATCATTTTTCTAAAT 57.034 33.333 1.92 0.00 34.29 1.40
2804 6006 4.495422 GTTGATGACAGTTCACCGTAGAT 58.505 43.478 0.00 0.00 33.38 1.98
2810 6012 4.763279 TGACAGTTCACCGTAGATAAGTGA 59.237 41.667 0.00 0.00 0.00 3.41
2816 6018 7.492669 CAGTTCACCGTAGATAAGTGATCAAAT 59.507 37.037 0.00 0.00 36.98 2.32
2818 6020 6.873997 TCACCGTAGATAAGTGATCAAATGT 58.126 36.000 0.00 0.00 36.98 2.71
3000 6202 5.862924 AATCTATTGGTGAACAGTGAACG 57.137 39.130 0.00 0.00 0.00 3.95
3194 6396 1.055040 CTCCAGGGATAAGGCAGAGG 58.945 60.000 0.00 0.00 0.00 3.69
3200 6402 3.056080 AGGGATAAGGCAGAGGCAATTA 58.944 45.455 0.00 0.00 43.71 1.40
3317 6520 8.094798 TCGCTTTCTTTACTTTTGATGTATGT 57.905 30.769 0.00 0.00 0.00 2.29
3318 6521 9.210329 TCGCTTTCTTTACTTTTGATGTATGTA 57.790 29.630 0.00 0.00 0.00 2.29
3319 6522 9.988350 CGCTTTCTTTACTTTTGATGTATGTAT 57.012 29.630 0.00 0.00 0.00 2.29
3366 6569 6.331369 TGCCTACTTTTTCTTCCATTCTTG 57.669 37.500 0.00 0.00 0.00 3.02
3603 6806 3.953712 TCTTGCATCTAAGTCGTTGGA 57.046 42.857 0.00 0.00 0.00 3.53
3604 6807 3.849911 TCTTGCATCTAAGTCGTTGGAG 58.150 45.455 0.00 0.00 0.00 3.86
3606 6809 4.461431 TCTTGCATCTAAGTCGTTGGAGTA 59.539 41.667 0.00 0.00 0.00 2.59
3608 6811 5.142061 TGCATCTAAGTCGTTGGAGTAAA 57.858 39.130 0.00 0.00 0.00 2.01
3609 6812 5.730550 TGCATCTAAGTCGTTGGAGTAAAT 58.269 37.500 0.00 0.00 0.00 1.40
3612 6815 6.074249 GCATCTAAGTCGTTGGAGTAAATAGC 60.074 42.308 0.00 0.00 0.00 2.97
3614 6817 7.108841 TCTAAGTCGTTGGAGTAAATAGCAT 57.891 36.000 0.00 0.00 0.00 3.79
3615 6818 8.229253 TCTAAGTCGTTGGAGTAAATAGCATA 57.771 34.615 0.00 0.00 0.00 3.14
3616 6819 8.689061 TCTAAGTCGTTGGAGTAAATAGCATAA 58.311 33.333 0.00 0.00 0.00 1.90
3617 6820 9.309516 CTAAGTCGTTGGAGTAAATAGCATAAA 57.690 33.333 0.00 0.00 0.00 1.40
3618 6821 8.556213 AAGTCGTTGGAGTAAATAGCATAAAA 57.444 30.769 0.00 0.00 0.00 1.52
3619 6822 7.971455 AGTCGTTGGAGTAAATAGCATAAAAC 58.029 34.615 0.00 0.00 0.00 2.43
3620 6823 7.822822 AGTCGTTGGAGTAAATAGCATAAAACT 59.177 33.333 0.00 0.00 0.00 2.66
3621 6824 9.090692 GTCGTTGGAGTAAATAGCATAAAACTA 57.909 33.333 0.00 0.00 0.00 2.24
3622 6825 9.090692 TCGTTGGAGTAAATAGCATAAAACTAC 57.909 33.333 0.00 0.00 0.00 2.73
3623 6826 8.333186 CGTTGGAGTAAATAGCATAAAACTACC 58.667 37.037 0.00 0.00 0.00 3.18
3624 6827 9.169592 GTTGGAGTAAATAGCATAAAACTACCA 57.830 33.333 0.00 0.00 0.00 3.25
3625 6828 8.726870 TGGAGTAAATAGCATAAAACTACCAC 57.273 34.615 0.00 0.00 0.00 4.16
3626 6829 8.322828 TGGAGTAAATAGCATAAAACTACCACA 58.677 33.333 0.00 0.00 0.00 4.17
3627 6830 9.338622 GGAGTAAATAGCATAAAACTACCACAT 57.661 33.333 0.00 0.00 0.00 3.21
3639 6842 4.684623 CCACATTTGGGGCTAGGG 57.315 61.111 0.00 0.00 39.57 3.53
3640 6843 1.697297 CCACATTTGGGGCTAGGGT 59.303 57.895 0.00 0.00 39.57 4.34
3641 6844 0.041090 CCACATTTGGGGCTAGGGTT 59.959 55.000 0.00 0.00 39.57 4.11
3642 6845 1.286553 CCACATTTGGGGCTAGGGTTA 59.713 52.381 0.00 0.00 39.57 2.85
3643 6846 2.375146 CACATTTGGGGCTAGGGTTAC 58.625 52.381 0.00 0.00 0.00 2.50
3644 6847 1.064979 ACATTTGGGGCTAGGGTTACG 60.065 52.381 0.00 0.00 0.00 3.18
3645 6848 0.549469 ATTTGGGGCTAGGGTTACGG 59.451 55.000 0.00 0.00 0.00 4.02
3646 6849 0.547229 TTTGGGGCTAGGGTTACGGA 60.547 55.000 0.00 0.00 0.00 4.69
3647 6850 0.547229 TTGGGGCTAGGGTTACGGAA 60.547 55.000 0.00 0.00 0.00 4.30
3648 6851 0.547229 TGGGGCTAGGGTTACGGAAA 60.547 55.000 0.00 0.00 0.00 3.13
3649 6852 0.620030 GGGGCTAGGGTTACGGAAAA 59.380 55.000 0.00 0.00 0.00 2.29
3650 6853 1.213678 GGGGCTAGGGTTACGGAAAAT 59.786 52.381 0.00 0.00 0.00 1.82
3651 6854 2.357465 GGGGCTAGGGTTACGGAAAATT 60.357 50.000 0.00 0.00 0.00 1.82
3652 6855 3.117926 GGGGCTAGGGTTACGGAAAATTA 60.118 47.826 0.00 0.00 0.00 1.40
3653 6856 3.879295 GGGCTAGGGTTACGGAAAATTAC 59.121 47.826 0.00 0.00 0.00 1.89
3654 6857 3.879295 GGCTAGGGTTACGGAAAATTACC 59.121 47.826 0.00 0.00 0.00 2.85
3655 6858 4.516323 GCTAGGGTTACGGAAAATTACCA 58.484 43.478 0.00 0.00 0.00 3.25
3656 6859 4.333649 GCTAGGGTTACGGAAAATTACCAC 59.666 45.833 0.00 0.00 0.00 4.16
3657 6860 4.645863 AGGGTTACGGAAAATTACCACT 57.354 40.909 0.00 0.00 0.00 4.00
3658 6861 4.989277 AGGGTTACGGAAAATTACCACTT 58.011 39.130 0.00 0.00 0.00 3.16
3659 6862 5.005740 AGGGTTACGGAAAATTACCACTTC 58.994 41.667 0.00 0.00 0.00 3.01
3660 6863 5.005740 GGGTTACGGAAAATTACCACTTCT 58.994 41.667 0.00 0.00 0.00 2.85
3661 6864 5.122869 GGGTTACGGAAAATTACCACTTCTC 59.877 44.000 0.00 0.00 0.00 2.87
3662 6865 5.936372 GGTTACGGAAAATTACCACTTCTCT 59.064 40.000 0.00 0.00 0.00 3.10
3663 6866 6.429078 GGTTACGGAAAATTACCACTTCTCTT 59.571 38.462 0.00 0.00 0.00 2.85
3664 6867 7.040892 GGTTACGGAAAATTACCACTTCTCTTT 60.041 37.037 0.00 0.00 0.00 2.52
3665 6868 6.555812 ACGGAAAATTACCACTTCTCTTTC 57.444 37.500 0.00 0.00 0.00 2.62
3666 6869 6.296803 ACGGAAAATTACCACTTCTCTTTCT 58.703 36.000 0.00 0.00 0.00 2.52
3667 6870 6.771267 ACGGAAAATTACCACTTCTCTTTCTT 59.229 34.615 0.00 0.00 0.00 2.52
3668 6871 7.284716 ACGGAAAATTACCACTTCTCTTTCTTT 59.715 33.333 0.00 0.00 0.00 2.52
3669 6872 7.803659 CGGAAAATTACCACTTCTCTTTCTTTC 59.196 37.037 3.17 0.00 0.00 2.62
3670 6873 8.082852 GGAAAATTACCACTTCTCTTTCTTTCC 58.917 37.037 0.00 0.00 32.65 3.13
3671 6874 7.526142 AAATTACCACTTCTCTTTCTTTCCC 57.474 36.000 0.00 0.00 0.00 3.97
3672 6875 5.640158 TTACCACTTCTCTTTCTTTCCCA 57.360 39.130 0.00 0.00 0.00 4.37
3673 6876 4.519906 ACCACTTCTCTTTCTTTCCCAA 57.480 40.909 0.00 0.00 0.00 4.12
3674 6877 4.867086 ACCACTTCTCTTTCTTTCCCAAA 58.133 39.130 0.00 0.00 0.00 3.28
3675 6878 5.269189 ACCACTTCTCTTTCTTTCCCAAAA 58.731 37.500 0.00 0.00 0.00 2.44
3676 6879 5.899547 ACCACTTCTCTTTCTTTCCCAAAAT 59.100 36.000 0.00 0.00 0.00 1.82
3677 6880 6.183360 ACCACTTCTCTTTCTTTCCCAAAATG 60.183 38.462 0.00 0.00 0.00 2.32
3678 6881 5.693555 CACTTCTCTTTCTTTCCCAAAATGC 59.306 40.000 0.00 0.00 0.00 3.56
3679 6882 5.600069 ACTTCTCTTTCTTTCCCAAAATGCT 59.400 36.000 0.00 0.00 0.00 3.79
3680 6883 6.777580 ACTTCTCTTTCTTTCCCAAAATGCTA 59.222 34.615 0.00 0.00 0.00 3.49
3681 6884 6.575162 TCTCTTTCTTTCCCAAAATGCTAC 57.425 37.500 0.00 0.00 0.00 3.58
3682 6885 5.476945 TCTCTTTCTTTCCCAAAATGCTACC 59.523 40.000 0.00 0.00 0.00 3.18
3683 6886 5.144100 TCTTTCTTTCCCAAAATGCTACCA 58.856 37.500 0.00 0.00 0.00 3.25
3684 6887 4.864704 TTCTTTCCCAAAATGCTACCAC 57.135 40.909 0.00 0.00 0.00 4.16
3685 6888 3.838565 TCTTTCCCAAAATGCTACCACA 58.161 40.909 0.00 0.00 0.00 4.17
3686 6889 4.219115 TCTTTCCCAAAATGCTACCACAA 58.781 39.130 0.00 0.00 0.00 3.33
3687 6890 4.651503 TCTTTCCCAAAATGCTACCACAAA 59.348 37.500 0.00 0.00 0.00 2.83
3688 6891 5.306678 TCTTTCCCAAAATGCTACCACAAAT 59.693 36.000 0.00 0.00 0.00 2.32
3689 6892 5.559148 TTCCCAAAATGCTACCACAAATT 57.441 34.783 0.00 0.00 0.00 1.82
3690 6893 5.559148 TCCCAAAATGCTACCACAAATTT 57.441 34.783 0.00 0.00 0.00 1.82
3691 6894 5.303971 TCCCAAAATGCTACCACAAATTTG 58.696 37.500 16.67 16.67 33.57 2.32
3692 6895 4.455190 CCCAAAATGCTACCACAAATTTGG 59.545 41.667 21.74 8.84 43.38 3.28
3708 6911 7.864307 CAAATTTGGTTTGCTGTTTCAAAAA 57.136 28.000 10.49 0.00 40.62 1.94
3709 6912 7.718608 CAAATTTGGTTTGCTGTTTCAAAAAC 58.281 30.769 10.49 0.00 40.62 2.43
3712 6915 3.339141 GGTTTGCTGTTTCAAAAACCCA 58.661 40.909 5.09 0.00 43.74 4.51
3713 6916 3.753797 GGTTTGCTGTTTCAAAAACCCAA 59.246 39.130 5.09 2.09 43.74 4.12
3714 6917 4.216472 GGTTTGCTGTTTCAAAAACCCAAA 59.784 37.500 5.09 11.27 43.74 3.28
3715 6918 5.105957 GGTTTGCTGTTTCAAAAACCCAAAT 60.106 36.000 15.28 0.00 43.74 2.32
3716 6919 5.557891 TTGCTGTTTCAAAAACCCAAATG 57.442 34.783 0.48 0.00 0.00 2.32
3717 6920 4.836825 TGCTGTTTCAAAAACCCAAATGA 58.163 34.783 0.48 0.00 0.00 2.57
3718 6921 4.633565 TGCTGTTTCAAAAACCCAAATGAC 59.366 37.500 0.48 0.00 0.00 3.06
3719 6922 4.035091 GCTGTTTCAAAAACCCAAATGACC 59.965 41.667 0.48 0.00 0.00 4.02
3720 6923 5.165961 TGTTTCAAAAACCCAAATGACCA 57.834 34.783 0.48 0.00 0.00 4.02
3721 6924 4.938226 TGTTTCAAAAACCCAAATGACCAC 59.062 37.500 0.48 0.00 0.00 4.16
3722 6925 3.828875 TCAAAAACCCAAATGACCACC 57.171 42.857 0.00 0.00 0.00 4.61
3723 6926 3.379452 TCAAAAACCCAAATGACCACCT 58.621 40.909 0.00 0.00 0.00 4.00
3724 6927 3.133721 TCAAAAACCCAAATGACCACCTG 59.866 43.478 0.00 0.00 0.00 4.00
3725 6928 1.715785 AAACCCAAATGACCACCTGG 58.284 50.000 0.00 0.00 42.17 4.45
3740 6943 4.743493 CCACCTGGTTTAAAATTGATCCG 58.257 43.478 0.00 0.00 0.00 4.18
3741 6944 4.219725 CCACCTGGTTTAAAATTGATCCGT 59.780 41.667 0.00 0.00 0.00 4.69
3742 6945 5.279256 CCACCTGGTTTAAAATTGATCCGTT 60.279 40.000 0.00 0.00 0.00 4.44
3743 6946 6.071840 CCACCTGGTTTAAAATTGATCCGTTA 60.072 38.462 0.00 0.00 0.00 3.18
3744 6947 7.027161 CACCTGGTTTAAAATTGATCCGTTAG 58.973 38.462 0.00 0.00 0.00 2.34
3745 6948 6.152154 ACCTGGTTTAAAATTGATCCGTTAGG 59.848 38.462 0.00 0.00 39.46 2.69
3746 6949 6.152154 CCTGGTTTAAAATTGATCCGTTAGGT 59.848 38.462 0.00 0.00 39.05 3.08
3747 6950 7.309560 CCTGGTTTAAAATTGATCCGTTAGGTT 60.310 37.037 0.00 0.00 39.05 3.50
3748 6951 7.371936 TGGTTTAAAATTGATCCGTTAGGTTG 58.628 34.615 0.00 0.00 39.05 3.77
3749 6952 6.809689 GGTTTAAAATTGATCCGTTAGGTTGG 59.190 38.462 0.00 0.00 39.05 3.77
3750 6953 6.518208 TTAAAATTGATCCGTTAGGTTGGG 57.482 37.500 0.00 0.00 39.05 4.12
3751 6954 3.732048 AATTGATCCGTTAGGTTGGGT 57.268 42.857 0.00 0.00 39.05 4.51
3752 6955 3.732048 ATTGATCCGTTAGGTTGGGTT 57.268 42.857 0.00 0.00 39.05 4.11
3753 6956 2.773993 TGATCCGTTAGGTTGGGTTC 57.226 50.000 0.00 0.00 39.05 3.62
3754 6957 1.979308 TGATCCGTTAGGTTGGGTTCA 59.021 47.619 0.00 0.00 39.05 3.18
3755 6958 2.027561 TGATCCGTTAGGTTGGGTTCAG 60.028 50.000 0.00 0.00 39.05 3.02
3756 6959 1.719529 TCCGTTAGGTTGGGTTCAGA 58.280 50.000 0.00 0.00 39.05 3.27
3763 6966 3.771577 AGGTTGGGTTCAGAAGTAGTG 57.228 47.619 0.00 0.00 0.00 2.74
3770 6973 6.097915 TGGGTTCAGAAGTAGTGAAGTTAG 57.902 41.667 0.00 0.00 34.59 2.34
3778 6981 6.754209 CAGAAGTAGTGAAGTTAGGCTACATG 59.246 42.308 0.00 0.00 37.02 3.21
3799 7005 3.327757 TGTTCTGGAAGCAAGATACCTGT 59.672 43.478 0.00 0.00 0.00 4.00
3812 7018 5.407407 AGATACCTGTCACGATGAAAACT 57.593 39.130 0.00 0.00 0.00 2.66
3859 7065 2.623416 AGCCTGATGCATTCACATGATG 59.377 45.455 0.00 0.00 44.83 3.07
3901 7107 3.438360 GCAAATTAAGGTCGATTGGCTG 58.562 45.455 0.00 0.00 31.05 4.85
3911 7117 1.207811 TCGATTGGCTGCTGAATCTGA 59.792 47.619 17.07 13.99 0.00 3.27
3926 7132 4.286808 TGAATCTGAACTGGGATGAACTCA 59.713 41.667 0.00 0.00 0.00 3.41
3952 7158 2.046314 CCGAAGCCATTGGTCCGT 60.046 61.111 4.26 0.00 0.00 4.69
3956 7162 0.321653 GAAGCCATTGGTCCGTGTCT 60.322 55.000 4.26 0.00 0.00 3.41
4038 7244 2.157668 GTGTTTGTGAGGATGTAGTGCG 59.842 50.000 0.00 0.00 0.00 5.34
4040 7246 0.973632 TTGTGAGGATGTAGTGCGGT 59.026 50.000 0.00 0.00 0.00 5.68
4160 7367 1.130561 GCTGGAATACTTGAACGGCAC 59.869 52.381 0.00 0.00 33.77 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.066646 TCAGTCCATTTCGTCAACAAGA 57.933 40.909 0.00 0.00 0.00 3.02
5 6 4.271696 AGACATCAGTCCATTTCGTCAA 57.728 40.909 0.00 0.00 46.15 3.18
25 26 5.207768 CCATGTTGAACAAGAGAACGAAAG 58.792 41.667 0.62 0.00 0.00 2.62
29 30 3.559655 TGACCATGTTGAACAAGAGAACG 59.440 43.478 0.62 0.00 0.00 3.95
39 40 3.196463 ACGTAACGTTGACCATGTTGAA 58.804 40.909 11.99 0.00 36.35 2.69
80 81 3.812019 CTACTCCGGTGTCGCGCT 61.812 66.667 13.38 0.00 34.56 5.92
85 86 5.485620 AGAAAATAAACCTACTCCGGTGTC 58.514 41.667 13.38 0.00 37.36 3.67
141 148 9.787532 CATATTAAGTCCAAACCAGTGTATTTG 57.212 33.333 9.21 9.21 35.89 2.32
143 150 8.333235 TCCATATTAAGTCCAAACCAGTGTATT 58.667 33.333 0.00 0.00 0.00 1.89
149 156 8.122472 ACTTTTCCATATTAAGTCCAAACCAG 57.878 34.615 0.00 0.00 0.00 4.00
258 265 3.581755 TCAAAGTCGTGGGAGTATTTCG 58.418 45.455 0.00 0.00 0.00 3.46
285 292 2.826428 TGCTCCAATCTAATCGCAGTC 58.174 47.619 0.00 0.00 0.00 3.51
286 293 2.939103 GTTGCTCCAATCTAATCGCAGT 59.061 45.455 0.00 0.00 0.00 4.40
287 294 2.938451 TGTTGCTCCAATCTAATCGCAG 59.062 45.455 0.00 0.00 0.00 5.18
291 299 6.624423 ACAACATTGTTGCTCCAATCTAATC 58.376 36.000 25.60 0.00 38.47 1.75
296 304 3.983344 GTGACAACATTGTTGCTCCAATC 59.017 43.478 25.60 16.12 42.43 2.67
298 306 3.023119 AGTGACAACATTGTTGCTCCAA 58.977 40.909 25.60 7.56 42.43 3.53
299 307 2.618241 GAGTGACAACATTGTTGCTCCA 59.382 45.455 25.60 18.47 42.43 3.86
300 308 2.880890 AGAGTGACAACATTGTTGCTCC 59.119 45.455 25.60 16.50 42.43 4.70
307 315 3.303990 CGGGTGAAAGAGTGACAACATTG 60.304 47.826 0.00 0.00 0.00 2.82
328 336 9.103048 GAAACCTTTATTCATATTATTCGTGCG 57.897 33.333 0.00 0.00 0.00 5.34
341 349 5.144100 TGGGCTTTCAGAAACCTTTATTCA 58.856 37.500 11.86 1.97 0.00 2.57
354 362 3.243301 CGGATGATTTGATGGGCTTTCAG 60.243 47.826 0.00 0.00 0.00 3.02
376 384 4.827284 TCAAGTCTTCCCATCTTTTTGGAC 59.173 41.667 0.00 0.00 39.25 4.02
393 401 5.504665 CCCAAATATGTTCATCGCTCAAGTC 60.505 44.000 0.00 0.00 0.00 3.01
401 409 1.266718 CCGGCCCAAATATGTTCATCG 59.733 52.381 0.00 0.00 0.00 3.84
409 417 1.227438 CGACGACCGGCCCAAATAT 60.227 57.895 0.00 0.00 33.91 1.28
415 423 4.137872 TGATTCGACGACCGGCCC 62.138 66.667 0.00 0.00 39.14 5.80
420 428 0.458025 GGTCCTGTGATTCGACGACC 60.458 60.000 0.00 0.00 0.00 4.79
425 433 1.275291 GGTGAAGGTCCTGTGATTCGA 59.725 52.381 0.00 0.00 0.00 3.71
447 455 2.096496 GTGGAATCTTTCATCGGCACAG 59.904 50.000 0.00 0.00 0.00 3.66
452 460 2.092968 TGGAGGTGGAATCTTTCATCGG 60.093 50.000 0.00 0.00 0.00 4.18
461 469 4.335416 TGATTCTTTGTGGAGGTGGAATC 58.665 43.478 0.00 0.00 39.31 2.52
465 473 3.891366 AGTTTGATTCTTTGTGGAGGTGG 59.109 43.478 0.00 0.00 0.00 4.61
467 475 4.792068 TCAGTTTGATTCTTTGTGGAGGT 58.208 39.130 0.00 0.00 0.00 3.85
502 510 5.989777 GTCTGGTGAGTTTATGTTAGTGTGT 59.010 40.000 0.00 0.00 0.00 3.72
504 512 6.420913 AGTCTGGTGAGTTTATGTTAGTGT 57.579 37.500 0.00 0.00 0.00 3.55
507 515 5.950883 TCGAGTCTGGTGAGTTTATGTTAG 58.049 41.667 0.00 0.00 0.00 2.34
519 527 1.067060 TCGGCATATTCGAGTCTGGTG 59.933 52.381 0.00 0.00 32.51 4.17
520 528 1.399714 TCGGCATATTCGAGTCTGGT 58.600 50.000 0.00 0.00 32.51 4.00
524 532 1.457303 GCACATCGGCATATTCGAGTC 59.543 52.381 4.56 0.00 40.09 3.36
543 551 1.594331 AGAAGGTTTTGTGTCCTCGC 58.406 50.000 0.00 0.00 33.09 5.03
549 557 8.403236 GTGTCATAAAGTTAGAAGGTTTTGTGT 58.597 33.333 0.00 0.00 0.00 3.72
558 566 4.250464 TGGCGGTGTCATAAAGTTAGAAG 58.750 43.478 0.00 0.00 0.00 2.85
559 567 4.274602 TGGCGGTGTCATAAAGTTAGAA 57.725 40.909 0.00 0.00 0.00 2.10
563 571 4.657436 TTTTTGGCGGTGTCATAAAGTT 57.343 36.364 0.00 0.00 0.00 2.66
609 617 2.477375 GTGGTGATCGTAGTTTCGCAAA 59.523 45.455 0.00 0.00 0.00 3.68
611 619 1.271379 AGTGGTGATCGTAGTTTCGCA 59.729 47.619 0.00 0.00 0.00 5.10
612 620 1.992170 AGTGGTGATCGTAGTTTCGC 58.008 50.000 0.00 0.00 0.00 4.70
614 622 8.753175 GTCAATTATAGTGGTGATCGTAGTTTC 58.247 37.037 0.00 0.00 0.00 2.78
622 630 8.946085 TGTTCTTTGTCAATTATAGTGGTGATC 58.054 33.333 0.00 0.00 0.00 2.92
648 657 8.788806 CACGGATCTTCAGTAGTTCTATTCTAT 58.211 37.037 0.00 0.00 0.00 1.98
649 658 7.991460 TCACGGATCTTCAGTAGTTCTATTCTA 59.009 37.037 0.00 0.00 0.00 2.10
650 659 6.829298 TCACGGATCTTCAGTAGTTCTATTCT 59.171 38.462 0.00 0.00 0.00 2.40
651 660 7.028926 TCACGGATCTTCAGTAGTTCTATTC 57.971 40.000 0.00 0.00 0.00 1.75
652 661 7.504238 AGATCACGGATCTTCAGTAGTTCTATT 59.496 37.037 9.74 0.00 45.86 1.73
673 682 6.665248 TCTTAACAGTGAGAGATGGAAGATCA 59.335 38.462 0.00 0.00 0.00 2.92
677 686 6.871844 TCATCTTAACAGTGAGAGATGGAAG 58.128 40.000 22.58 8.40 43.47 3.46
679 688 7.255766 GCTATCATCTTAACAGTGAGAGATGGA 60.256 40.741 22.58 15.34 43.47 3.41
690 699 3.862642 GCCTCCGGCTATCATCTTAACAG 60.863 52.174 0.00 0.00 46.69 3.16
715 724 2.813754 CGCCAGAGAAATTTTGGTCTCA 59.186 45.455 8.76 0.00 42.34 3.27
717 726 2.162681 CCGCCAGAGAAATTTTGGTCT 58.837 47.619 8.76 2.02 34.43 3.85
725 734 2.187946 CTCCGCCGCCAGAGAAAT 59.812 61.111 0.00 0.00 31.43 2.17
739 748 0.747852 GGACGATCACCTTCTCCTCC 59.252 60.000 0.00 0.00 0.00 4.30
741 750 0.336737 AGGGACGATCACCTTCTCCT 59.663 55.000 0.00 0.00 31.68 3.69
744 753 1.617947 GGCAGGGACGATCACCTTCT 61.618 60.000 0.00 0.00 34.05 2.85
750 759 2.994995 ACGTGGCAGGGACGATCA 60.995 61.111 12.33 0.00 39.21 2.92
757 766 1.243902 ATGTTAAACACGTGGCAGGG 58.756 50.000 21.57 3.34 0.00 4.45
759 768 2.664424 CGGAATGTTAAACACGTGGCAG 60.664 50.000 21.57 0.00 0.00 4.85
760 769 1.264557 CGGAATGTTAAACACGTGGCA 59.735 47.619 21.57 10.57 0.00 4.92
761 770 1.532007 TCGGAATGTTAAACACGTGGC 59.468 47.619 21.57 5.04 0.00 5.01
869 4009 1.623811 CGAAGAAGGGTGAGGAAGGAA 59.376 52.381 0.00 0.00 0.00 3.36
870 4010 1.267121 CGAAGAAGGGTGAGGAAGGA 58.733 55.000 0.00 0.00 0.00 3.36
1218 4375 2.328099 GGCCAAGTCGAGCAACTGG 61.328 63.158 0.00 0.00 0.00 4.00
1268 4428 0.186873 GGCCATGAATCCCCATCAGT 59.813 55.000 0.00 0.00 0.00 3.41
1285 4445 3.766051 AGGATTCTCCACTCAAAATTGGC 59.234 43.478 0.00 0.00 39.61 4.52
1315 4475 1.786004 CAAATGAAAACATGCGCGTGT 59.214 42.857 29.03 29.03 0.00 4.49
1318 4478 3.548802 GCAAATGAAAACATGCGCG 57.451 47.368 0.00 0.00 0.00 6.86
1327 4487 1.135141 GCCATGGCTACGCAAATGAAA 60.135 47.619 29.98 0.00 38.26 2.69
1332 4492 3.130819 CGGCCATGGCTACGCAAA 61.131 61.111 34.70 0.00 41.60 3.68
1371 4531 6.059484 TGAACCTAACCTTCCACAAGTAAAG 58.941 40.000 0.00 0.00 0.00 1.85
1372 4532 6.003859 TGAACCTAACCTTCCACAAGTAAA 57.996 37.500 0.00 0.00 0.00 2.01
1395 4558 8.392612 CACAGCAAAACAATTTCTGAATTTTCT 58.607 29.630 0.00 0.00 33.25 2.52
1453 4616 6.145048 CAGAACCTTCATTCAGCAAAACAATC 59.855 38.462 0.00 0.00 0.00 2.67
1482 4645 3.307242 CACGATCTAAAAGTGCTGGTAGC 59.693 47.826 0.00 0.00 42.82 3.58
1492 4682 5.316770 GCTGTTTGTAGCACGATCTAAAAG 58.683 41.667 0.00 0.00 43.17 2.27
1505 4695 4.213482 GGTTAACTGTGAGGCTGTTTGTAG 59.787 45.833 5.42 0.00 39.46 2.74
1514 4704 1.740025 GCAGATGGTTAACTGTGAGGC 59.260 52.381 5.42 0.00 36.62 4.70
1546 4736 9.828039 GATCTAATTCAGCATATGGATATGTCA 57.172 33.333 4.56 0.00 41.63 3.58
1577 4767 0.839946 ACAACACCCAGCAGAGACTT 59.160 50.000 0.00 0.00 0.00 3.01
1578 4768 1.717032 TACAACACCCAGCAGAGACT 58.283 50.000 0.00 0.00 0.00 3.24
1580 4770 2.875672 GCAATACAACACCCAGCAGAGA 60.876 50.000 0.00 0.00 0.00 3.10
1584 4774 1.246649 CTGCAATACAACACCCAGCA 58.753 50.000 0.00 0.00 0.00 4.41
1594 4784 2.779755 ATTCCACGACCTGCAATACA 57.220 45.000 0.00 0.00 0.00 2.29
1597 4787 1.949525 GCATATTCCACGACCTGCAAT 59.050 47.619 0.00 0.00 0.00 3.56
1599 4789 0.251634 TGCATATTCCACGACCTGCA 59.748 50.000 0.00 0.00 37.29 4.41
1772 4962 4.431809 TCAGTTTTTGCAAAGACACCATG 58.568 39.130 28.39 19.59 0.00 3.66
1773 4963 4.734398 TCAGTTTTTGCAAAGACACCAT 57.266 36.364 28.39 10.30 0.00 3.55
1796 4986 2.787473 TCCTGGAATACACCTGCTTG 57.213 50.000 0.00 0.00 0.00 4.01
1797 4987 4.263905 TGAAATCCTGGAATACACCTGCTT 60.264 41.667 0.00 0.00 0.00 3.91
2012 5203 3.575256 TGAACTGCCTCTTCAATGCATTT 59.425 39.130 9.83 0.00 33.97 2.32
2040 5231 2.941453 ACAGCGACAACGACATAGAT 57.059 45.000 0.00 0.00 42.66 1.98
2231 5422 4.104261 AGCATCATCTCAAATCCCATCTCA 59.896 41.667 0.00 0.00 0.00 3.27
2312 5503 0.914644 AGATGCTTGCAGCCTAGGAA 59.085 50.000 14.75 0.00 41.51 3.36
2318 5509 1.239296 TGTGTCAGATGCTTGCAGCC 61.239 55.000 7.26 0.00 41.51 4.85
2428 5622 2.382882 AGAGCTACAGATAGTGCAGCA 58.617 47.619 0.00 0.00 46.84 4.41
2483 5685 5.525378 CAGGCGAGAAATCACTTAGCTTAAT 59.475 40.000 0.00 0.00 0.00 1.40
2649 5851 5.482175 ACTGAAATTGACTAGTCAGTAGCCT 59.518 40.000 23.97 5.17 46.76 4.58
2777 5979 3.411446 GGTGAACTGTCATCAACCATGA 58.589 45.455 0.00 0.00 39.39 3.07
2816 6018 7.178274 AGGAGGCACAATAATTATGTTTGAACA 59.822 33.333 0.00 0.00 44.06 3.18
2818 6020 7.615365 AGAGGAGGCACAATAATTATGTTTGAA 59.385 33.333 0.00 0.00 0.00 2.69
2975 6177 6.578545 CGTTCACTGTTCACCAATAGATTTTG 59.421 38.462 0.00 0.00 0.00 2.44
3194 6396 4.526970 TCCCTGAAGAACCTGATAATTGC 58.473 43.478 0.00 0.00 0.00 3.56
3200 6402 1.765314 CGGATCCCTGAAGAACCTGAT 59.235 52.381 6.06 0.00 0.00 2.90
3317 6520 2.426024 GTTCTCTGACACGGTAGCCATA 59.574 50.000 0.00 0.00 0.00 2.74
3318 6521 1.204941 GTTCTCTGACACGGTAGCCAT 59.795 52.381 0.00 0.00 0.00 4.40
3319 6522 0.601558 GTTCTCTGACACGGTAGCCA 59.398 55.000 0.00 0.00 0.00 4.75
3320 6523 0.889306 AGTTCTCTGACACGGTAGCC 59.111 55.000 0.00 0.00 0.00 3.93
3535 6738 5.390387 AGCTATTGGAAACCCAGTTAAACA 58.610 37.500 0.00 0.00 34.71 2.83
3595 6798 7.971455 AGTTTTATGCTATTTACTCCAACGAC 58.029 34.615 0.00 0.00 0.00 4.34
3606 6809 8.257306 CCCAAATGTGGTAGTTTTATGCTATTT 58.743 33.333 0.00 0.00 44.30 1.40
3608 6811 6.323739 CCCCAAATGTGGTAGTTTTATGCTAT 59.676 38.462 0.00 0.00 44.30 2.97
3609 6812 5.654650 CCCCAAATGTGGTAGTTTTATGCTA 59.345 40.000 0.00 0.00 44.30 3.49
3612 6815 4.466015 AGCCCCAAATGTGGTAGTTTTATG 59.534 41.667 0.00 0.00 44.30 1.90
3614 6817 4.120946 AGCCCCAAATGTGGTAGTTTTA 57.879 40.909 0.00 0.00 44.30 1.52
3615 6818 2.970987 AGCCCCAAATGTGGTAGTTTT 58.029 42.857 0.00 0.00 44.30 2.43
3616 6819 2.694616 AGCCCCAAATGTGGTAGTTT 57.305 45.000 0.00 0.00 44.30 2.66
3617 6820 2.025321 CCTAGCCCCAAATGTGGTAGTT 60.025 50.000 0.00 0.00 44.30 2.24
3618 6821 1.564348 CCTAGCCCCAAATGTGGTAGT 59.436 52.381 0.00 0.00 44.30 2.73
3619 6822 1.133792 CCCTAGCCCCAAATGTGGTAG 60.134 57.143 0.00 0.00 44.30 3.18
3620 6823 0.923358 CCCTAGCCCCAAATGTGGTA 59.077 55.000 0.00 0.00 44.30 3.25
3621 6824 1.146544 ACCCTAGCCCCAAATGTGGT 61.147 55.000 0.00 0.00 44.30 4.16
3622 6825 0.041090 AACCCTAGCCCCAAATGTGG 59.959 55.000 0.00 0.00 45.53 4.17
3623 6826 2.375146 GTAACCCTAGCCCCAAATGTG 58.625 52.381 0.00 0.00 0.00 3.21
3624 6827 1.064979 CGTAACCCTAGCCCCAAATGT 60.065 52.381 0.00 0.00 0.00 2.71
3625 6828 1.675552 CGTAACCCTAGCCCCAAATG 58.324 55.000 0.00 0.00 0.00 2.32
3626 6829 0.549469 CCGTAACCCTAGCCCCAAAT 59.451 55.000 0.00 0.00 0.00 2.32
3627 6830 0.547229 TCCGTAACCCTAGCCCCAAA 60.547 55.000 0.00 0.00 0.00 3.28
3628 6831 0.547229 TTCCGTAACCCTAGCCCCAA 60.547 55.000 0.00 0.00 0.00 4.12
3629 6832 0.547229 TTTCCGTAACCCTAGCCCCA 60.547 55.000 0.00 0.00 0.00 4.96
3630 6833 0.620030 TTTTCCGTAACCCTAGCCCC 59.380 55.000 0.00 0.00 0.00 5.80
3631 6834 2.723322 ATTTTCCGTAACCCTAGCCC 57.277 50.000 0.00 0.00 0.00 5.19
3632 6835 3.879295 GGTAATTTTCCGTAACCCTAGCC 59.121 47.826 0.00 0.00 0.00 3.93
3633 6836 4.333649 GTGGTAATTTTCCGTAACCCTAGC 59.666 45.833 0.00 0.00 0.00 3.42
3634 6837 5.737860 AGTGGTAATTTTCCGTAACCCTAG 58.262 41.667 0.00 0.00 0.00 3.02
3635 6838 5.760484 AGTGGTAATTTTCCGTAACCCTA 57.240 39.130 0.00 0.00 0.00 3.53
3636 6839 4.645863 AGTGGTAATTTTCCGTAACCCT 57.354 40.909 0.00 0.00 0.00 4.34
3637 6840 5.005740 AGAAGTGGTAATTTTCCGTAACCC 58.994 41.667 0.00 0.00 0.00 4.11
3638 6841 5.936372 AGAGAAGTGGTAATTTTCCGTAACC 59.064 40.000 0.00 0.00 0.00 2.85
3639 6842 7.430992 AAGAGAAGTGGTAATTTTCCGTAAC 57.569 36.000 0.00 0.00 0.00 2.50
3640 6843 7.935210 AGAAAGAGAAGTGGTAATTTTCCGTAA 59.065 33.333 0.00 0.00 0.00 3.18
3641 6844 7.447594 AGAAAGAGAAGTGGTAATTTTCCGTA 58.552 34.615 0.00 0.00 0.00 4.02
3642 6845 6.296803 AGAAAGAGAAGTGGTAATTTTCCGT 58.703 36.000 0.00 0.00 0.00 4.69
3643 6846 6.803154 AGAAAGAGAAGTGGTAATTTTCCG 57.197 37.500 0.00 0.00 0.00 4.30
3644 6847 8.082852 GGAAAGAAAGAGAAGTGGTAATTTTCC 58.917 37.037 0.00 0.00 34.07 3.13
3645 6848 8.082852 GGGAAAGAAAGAGAAGTGGTAATTTTC 58.917 37.037 0.00 0.00 0.00 2.29
3646 6849 7.563556 TGGGAAAGAAAGAGAAGTGGTAATTTT 59.436 33.333 0.00 0.00 0.00 1.82
3647 6850 7.066781 TGGGAAAGAAAGAGAAGTGGTAATTT 58.933 34.615 0.00 0.00 0.00 1.82
3648 6851 6.610830 TGGGAAAGAAAGAGAAGTGGTAATT 58.389 36.000 0.00 0.00 0.00 1.40
3649 6852 6.200878 TGGGAAAGAAAGAGAAGTGGTAAT 57.799 37.500 0.00 0.00 0.00 1.89
3650 6853 5.640158 TGGGAAAGAAAGAGAAGTGGTAA 57.360 39.130 0.00 0.00 0.00 2.85
3651 6854 5.640158 TTGGGAAAGAAAGAGAAGTGGTA 57.360 39.130 0.00 0.00 0.00 3.25
3652 6855 4.519906 TTGGGAAAGAAAGAGAAGTGGT 57.480 40.909 0.00 0.00 0.00 4.16
3653 6856 5.852282 TTTTGGGAAAGAAAGAGAAGTGG 57.148 39.130 0.00 0.00 0.00 4.00
3654 6857 5.693555 GCATTTTGGGAAAGAAAGAGAAGTG 59.306 40.000 0.00 0.00 0.00 3.16
3655 6858 5.600069 AGCATTTTGGGAAAGAAAGAGAAGT 59.400 36.000 0.00 0.00 0.00 3.01
3656 6859 6.094193 AGCATTTTGGGAAAGAAAGAGAAG 57.906 37.500 0.00 0.00 0.00 2.85
3657 6860 6.015434 GGTAGCATTTTGGGAAAGAAAGAGAA 60.015 38.462 0.00 0.00 0.00 2.87
3658 6861 5.476945 GGTAGCATTTTGGGAAAGAAAGAGA 59.523 40.000 0.00 0.00 0.00 3.10
3659 6862 5.243730 TGGTAGCATTTTGGGAAAGAAAGAG 59.756 40.000 0.00 0.00 0.00 2.85
3660 6863 5.010617 GTGGTAGCATTTTGGGAAAGAAAGA 59.989 40.000 0.00 0.00 0.00 2.52
3661 6864 5.221422 TGTGGTAGCATTTTGGGAAAGAAAG 60.221 40.000 0.00 0.00 0.00 2.62
3662 6865 4.651503 TGTGGTAGCATTTTGGGAAAGAAA 59.348 37.500 0.00 0.00 0.00 2.52
3663 6866 4.219115 TGTGGTAGCATTTTGGGAAAGAA 58.781 39.130 0.00 0.00 0.00 2.52
3664 6867 3.838565 TGTGGTAGCATTTTGGGAAAGA 58.161 40.909 0.00 0.00 0.00 2.52
3665 6868 4.599047 TTGTGGTAGCATTTTGGGAAAG 57.401 40.909 0.00 0.00 0.00 2.62
3666 6869 5.559148 ATTTGTGGTAGCATTTTGGGAAA 57.441 34.783 0.00 0.00 0.00 3.13
3667 6870 5.559148 AATTTGTGGTAGCATTTTGGGAA 57.441 34.783 0.00 0.00 0.00 3.97
3668 6871 5.303971 CAAATTTGTGGTAGCATTTTGGGA 58.696 37.500 10.15 0.00 0.00 4.37
3669 6872 4.455190 CCAAATTTGTGGTAGCATTTTGGG 59.545 41.667 21.54 9.39 37.80 4.12
3670 6873 5.610235 CCAAATTTGTGGTAGCATTTTGG 57.390 39.130 16.73 18.59 36.54 3.28
3685 6888 6.865726 GGTTTTTGAAACAGCAAACCAAATTT 59.134 30.769 16.07 0.00 45.16 1.82
3686 6889 6.385843 GGTTTTTGAAACAGCAAACCAAATT 58.614 32.000 16.07 0.00 45.16 1.82
3687 6890 5.105957 GGGTTTTTGAAACAGCAAACCAAAT 60.106 36.000 19.58 0.00 46.87 2.32
3688 6891 4.216472 GGGTTTTTGAAACAGCAAACCAAA 59.784 37.500 19.58 1.54 46.87 3.28
3689 6892 3.753797 GGGTTTTTGAAACAGCAAACCAA 59.246 39.130 19.58 0.00 46.87 3.67
3690 6893 3.244561 TGGGTTTTTGAAACAGCAAACCA 60.245 39.130 19.58 2.45 46.87 3.67
3691 6894 3.339141 TGGGTTTTTGAAACAGCAAACC 58.661 40.909 14.13 14.13 45.11 3.27
3692 6895 5.363979 TTTGGGTTTTTGAAACAGCAAAC 57.636 34.783 5.97 0.00 37.48 2.93
3693 6896 5.707298 TCATTTGGGTTTTTGAAACAGCAAA 59.293 32.000 5.97 0.00 36.08 3.68
3694 6897 5.123027 GTCATTTGGGTTTTTGAAACAGCAA 59.877 36.000 5.97 0.00 0.00 3.91
3695 6898 4.633565 GTCATTTGGGTTTTTGAAACAGCA 59.366 37.500 5.97 0.00 0.00 4.41
3696 6899 4.035091 GGTCATTTGGGTTTTTGAAACAGC 59.965 41.667 5.97 0.00 0.00 4.40
3697 6900 5.064579 GTGGTCATTTGGGTTTTTGAAACAG 59.935 40.000 5.97 0.00 0.00 3.16
3698 6901 4.938226 GTGGTCATTTGGGTTTTTGAAACA 59.062 37.500 5.97 0.00 0.00 2.83
3699 6902 4.334203 GGTGGTCATTTGGGTTTTTGAAAC 59.666 41.667 0.00 0.00 0.00 2.78
3700 6903 4.226168 AGGTGGTCATTTGGGTTTTTGAAA 59.774 37.500 0.00 0.00 0.00 2.69
3701 6904 3.777522 AGGTGGTCATTTGGGTTTTTGAA 59.222 39.130 0.00 0.00 0.00 2.69
3702 6905 3.133721 CAGGTGGTCATTTGGGTTTTTGA 59.866 43.478 0.00 0.00 0.00 2.69
3703 6906 3.465871 CAGGTGGTCATTTGGGTTTTTG 58.534 45.455 0.00 0.00 0.00 2.44
3704 6907 2.437651 CCAGGTGGTCATTTGGGTTTTT 59.562 45.455 0.00 0.00 0.00 1.94
3705 6908 2.046292 CCAGGTGGTCATTTGGGTTTT 58.954 47.619 0.00 0.00 0.00 2.43
3706 6909 1.715785 CCAGGTGGTCATTTGGGTTT 58.284 50.000 0.00 0.00 0.00 3.27
3707 6910 3.455737 CCAGGTGGTCATTTGGGTT 57.544 52.632 0.00 0.00 0.00 4.11
3718 6921 4.219725 ACGGATCAATTTTAAACCAGGTGG 59.780 41.667 0.00 0.00 42.17 4.61
3719 6922 5.385509 ACGGATCAATTTTAAACCAGGTG 57.614 39.130 0.00 0.00 0.00 4.00
3720 6923 6.152154 CCTAACGGATCAATTTTAAACCAGGT 59.848 38.462 0.00 0.00 0.00 4.00
3721 6924 6.152154 ACCTAACGGATCAATTTTAAACCAGG 59.848 38.462 0.00 0.00 0.00 4.45
3722 6925 7.153217 ACCTAACGGATCAATTTTAAACCAG 57.847 36.000 0.00 0.00 0.00 4.00
3723 6926 7.371936 CAACCTAACGGATCAATTTTAAACCA 58.628 34.615 0.00 0.00 0.00 3.67
3724 6927 6.809689 CCAACCTAACGGATCAATTTTAAACC 59.190 38.462 0.00 0.00 0.00 3.27
3725 6928 6.809689 CCCAACCTAACGGATCAATTTTAAAC 59.190 38.462 0.00 0.00 0.00 2.01
3726 6929 6.494146 ACCCAACCTAACGGATCAATTTTAAA 59.506 34.615 0.00 0.00 0.00 1.52
3727 6930 6.011481 ACCCAACCTAACGGATCAATTTTAA 58.989 36.000 0.00 0.00 0.00 1.52
3728 6931 5.572252 ACCCAACCTAACGGATCAATTTTA 58.428 37.500 0.00 0.00 0.00 1.52
3729 6932 4.412843 ACCCAACCTAACGGATCAATTTT 58.587 39.130 0.00 0.00 0.00 1.82
3730 6933 4.042271 ACCCAACCTAACGGATCAATTT 57.958 40.909 0.00 0.00 0.00 1.82
3731 6934 3.732048 ACCCAACCTAACGGATCAATT 57.268 42.857 0.00 0.00 0.00 2.32
3732 6935 3.009695 TGAACCCAACCTAACGGATCAAT 59.990 43.478 0.00 0.00 0.00 2.57
3733 6936 2.372504 TGAACCCAACCTAACGGATCAA 59.627 45.455 0.00 0.00 0.00 2.57
3734 6937 1.979308 TGAACCCAACCTAACGGATCA 59.021 47.619 0.00 0.00 0.00 2.92
3735 6938 2.235402 TCTGAACCCAACCTAACGGATC 59.765 50.000 0.00 0.00 0.00 3.36
3736 6939 2.262637 TCTGAACCCAACCTAACGGAT 58.737 47.619 0.00 0.00 0.00 4.18
3737 6940 1.719529 TCTGAACCCAACCTAACGGA 58.280 50.000 0.00 0.00 0.00 4.69
3738 6941 2.224450 ACTTCTGAACCCAACCTAACGG 60.224 50.000 0.00 0.00 0.00 4.44
3739 6942 3.121738 ACTTCTGAACCCAACCTAACG 57.878 47.619 0.00 0.00 0.00 3.18
3740 6943 4.995487 CACTACTTCTGAACCCAACCTAAC 59.005 45.833 0.00 0.00 0.00 2.34
3741 6944 4.903049 TCACTACTTCTGAACCCAACCTAA 59.097 41.667 0.00 0.00 0.00 2.69
3742 6945 4.485875 TCACTACTTCTGAACCCAACCTA 58.514 43.478 0.00 0.00 0.00 3.08
3743 6946 3.314693 TCACTACTTCTGAACCCAACCT 58.685 45.455 0.00 0.00 0.00 3.50
3744 6947 3.764237 TCACTACTTCTGAACCCAACC 57.236 47.619 0.00 0.00 0.00 3.77
3745 6948 4.704965 ACTTCACTACTTCTGAACCCAAC 58.295 43.478 0.00 0.00 0.00 3.77
3746 6949 5.367945 AACTTCACTACTTCTGAACCCAA 57.632 39.130 0.00 0.00 0.00 4.12
3747 6950 5.011738 CCTAACTTCACTACTTCTGAACCCA 59.988 44.000 0.00 0.00 0.00 4.51
3748 6951 5.480205 CCTAACTTCACTACTTCTGAACCC 58.520 45.833 0.00 0.00 0.00 4.11
3749 6952 4.930405 GCCTAACTTCACTACTTCTGAACC 59.070 45.833 0.00 0.00 0.00 3.62
3750 6953 5.785243 AGCCTAACTTCACTACTTCTGAAC 58.215 41.667 0.00 0.00 0.00 3.18
3751 6954 6.492429 TGTAGCCTAACTTCACTACTTCTGAA 59.508 38.462 0.00 0.00 36.72 3.02
3752 6955 6.008331 TGTAGCCTAACTTCACTACTTCTGA 58.992 40.000 0.00 0.00 36.72 3.27
3753 6956 6.268825 TGTAGCCTAACTTCACTACTTCTG 57.731 41.667 0.00 0.00 36.72 3.02
3754 6957 6.437793 ACATGTAGCCTAACTTCACTACTTCT 59.562 38.462 0.00 0.00 36.72 2.85
3755 6958 6.631962 ACATGTAGCCTAACTTCACTACTTC 58.368 40.000 0.00 0.00 36.72 3.01
3756 6959 6.607004 ACATGTAGCCTAACTTCACTACTT 57.393 37.500 0.00 0.00 36.72 2.24
3763 6966 5.086104 TCCAGAACATGTAGCCTAACTTC 57.914 43.478 0.00 0.00 0.00 3.01
3770 6973 2.113860 TGCTTCCAGAACATGTAGCC 57.886 50.000 12.32 0.00 35.09 3.93
3778 6981 3.935828 GACAGGTATCTTGCTTCCAGAAC 59.064 47.826 0.00 0.00 0.00 3.01
3859 7065 1.526464 CTGCCAAACAACAAAATCGGC 59.474 47.619 0.00 0.00 38.56 5.54
3901 7107 3.272574 TCATCCCAGTTCAGATTCAGC 57.727 47.619 0.00 0.00 0.00 4.26
3911 7117 1.697432 TCGGTTGAGTTCATCCCAGTT 59.303 47.619 4.14 0.00 33.26 3.16
3926 7132 2.748058 AATGGCTTCGGCAGTCGGTT 62.748 55.000 0.00 0.00 42.43 4.44
3952 7158 0.542938 AGGGCAGTCAGTAGCAGACA 60.543 55.000 0.00 0.00 38.46 3.41
3956 7162 0.252057 TACCAGGGCAGTCAGTAGCA 60.252 55.000 0.00 0.00 0.00 3.49
4038 7244 2.240493 AGCAGTATGGCATCGTTACC 57.760 50.000 1.65 0.00 35.86 2.85
4040 7246 3.181501 GCAAAAGCAGTATGGCATCGTTA 60.182 43.478 1.65 0.00 35.86 3.18
4160 7367 0.393537 CTTTGCAGAGTAGGCTGGGG 60.394 60.000 0.00 0.00 36.41 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.